CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	0 crisprs	NA	0	0
NC_014625	Ketogulonicigenium vulgare Y25, complete sequence	2 crisprs	WYL,csa3,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	5	5
NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014625_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014625_1

1868502-1869129

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	PILER-CR
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CRISPRCasFinder
GTCGCTCCCCCCACGGGAGCGTGGATAGAAACN	CRT

9 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_014625_1

>merge|NC_014625|1|1868502-1869129|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAACCCCGATCCAACCGCGAAGTGGGCCAGCCGCGATGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACACTGTCACTCCGACTTGGAGAGCATCTACAATGACGTCGCTCCCCCCACGGGAGCGTGGATAGAACCAGTTGGCGTGCGGGCGTCCACATCTGAATGATGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTGCTTCCGGTAAAACTCCACCGCAGCGTGGAACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACGATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCTCCCCCACGGGAGCGTGGATAGAAACAGCGACCAATGGCGCGTAGCGACACCCTATCAGGACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTACGCTATGACCCAGATCCTCCGGGGGCGCGCAACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACCCCAGCAGGCGCGGCGCAGACGACAGGCGGGACGGTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

>NC_014625|1|1|1868502-1869129|PILER-CR
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAACC	AGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCT
CCCCCACGGGAGCGTGGATAGAAACAGCGACC	AATGGCGCGTAGCGACACCCTATCAGGACGTCGCTC
CCCCCACGGGAGCGTGGATAGAAACTACGCTA	TGACCCAGATCCTCCGGGGGCGCGCAACGTCGCTC
CCCCCACGGGAGCGTGGATAGAAACCCCAGCA	GGCGCGGCGCAGACGACAGGCGGGACGGTCGCTC
CCCCCACGGGAGCGGGGATAGAAAG

>NC_014625|1|1|1868502-1869129|CRISPRCasFinder
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAACC	AGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGC
GGTCGCTCCCCCACGGGAGCGTGGATAGAAAC	AGCGACCAATGGCGCGTAGCGACACCCTATCAGGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG
GTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

>NC_014625|1|1|1868502-1869129|CRT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAACC	AGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCG
GTCGCTCCCCCACGGGAGCGTGGATAGAAACA	GCGACCAATGGCGCGTAGCGACACCCTATCAGGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG
GTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014625.1\|WP_013384678.1\|1862874_1863639_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_014625.1\|WP_013384684.1\|1869255_1870707_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143423
NC_014625.1\|WP_162467613.1\|1877085_1877370_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NC_014625.1\|WP_013384686.1\|1871443_1872172_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NC_014625.1\|WP_193365312.1\|1856423_1857089_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735
NC_014625.1\|WP_013384680.1\|1865401_1866352_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_014625.1\|WP_013384689.1\|1874066_1875290_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380561
NC_014625.1\|WP_013384675.1\|1857160_1858066_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_014625.1\|WP_013384677.1\|1860255_1862493_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_014625.1\|WP_013384687.1\|1872168_1873095_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NC_014625.1\|WP_013384676.1\|1858105_1859845_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199835
NC_014625.1\|WP_013384683.1\|1868034_1868325_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014625.1\|WP_014537828.1\|1877621_1878584_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NC_014625.1\|WP_162467587.1\|1876492_1877155_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841
NC_014625.1\|WP_013384690.1\|1875456_1876335_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131350
NC_014625.1\|WP_013384681.1\|1866354_1866999_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_014625.1\|WP_013384688.1\|1873091_1873967_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NC_014625.1\|WP_013384679.1\|1863635_1865405_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_014625.1\|WP_013384682.1\|1866995_1868030_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_014625.1\|WP_013384685.1\|1870734_1871451_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487

Protein	Function_ID	Function_description	E-value
NC_014625.1\|WP_013384678.1\|1862874_1863639_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.53478e-97
NC_014625.1\|WP_013384684.1\|1869255_1870707_-\|aldehyde-dehydrogenase	gnl\|CDD\|143423	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.	0
NC_014625.1\|WP_162467613.1\|1877085_1877370_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	7.76093e-09
NC_014625.1\|WP_013384686.1\|1871443_1872172_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	2.65794e-100
NC_014625.1\|WP_193365312.1\|1856423_1857089_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	2.11351e-68
NC_014625.1\|WP_013384680.1\|1865401_1866352_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.38636e-150
NC_014625.1\|WP_013384689.1\|1874066_1875290_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380561	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.	2.78488e-101
NC_014625.1\|WP_013384675.1\|1857160_1858066_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.14263e-37
NC_014625.1\|WP_013384677.1\|1860255_1862493_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.32374e-51
NC_014625.1\|WP_013384687.1\|1872168_1873095_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.9332e-49
NC_014625.1\|WP_013384676.1\|1858105_1859845_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199835	cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase). This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.	7.77213e-123
NC_014625.1\|WP_013384683.1\|1868034_1868325_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.2587e-33
NC_014625.1\|WP_014537828.1\|1877621_1878584_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.28262e-90
NC_014625.1\|WP_162467587.1\|1876492_1877155_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.7919e-07
NC_014625.1\|WP_013384690.1\|1875456_1876335_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131350	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.	2.13957e-28
NC_014625.1\|WP_013384681.1\|1866354_1866999_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.6673e-40
NC_014625.1\|WP_013384688.1\|1873091_1873967_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.61552e-58
NC_014625.1\|WP_013384679.1\|1863635_1865405_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_014625.1\|WP_013384682.1\|1866995_1868030_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_014625.1\|WP_013384685.1\|1870734_1871451_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.24368e-106

>NC_014625.1|WP_013384683.1|1868034_1868325_+|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVNTLSDGGKKRLRQVARACEDWGQRVQFSVFEIELDPAQWTKLRARLESIIDAKTDSLRYYFLGTNWERRIEHVGAKPAKDLNGPLII
>NC_014625.1|WP_013384682.1|1866995_1868030_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTVYVTTEGAALKKDGENLVAEIEGSEKARVPLHMVASVVTFGPIFVSPALIGTCAERGITIALMDRIGRFQARIEGPVSGNVLLRRAQYRTADDAVDVVRSIVLGKLANQRAVIRRGLRDYGDEMAAPVRDALERASDRIEMILRRVQVKDDSIDLLRGAEGEAATLYFGVFNHLIRSPDATLHWTGRSRRPPLDPMNALLSFLYTLLTHDCRSACEAVGLDPAVGFLHRDRPGRPSLALDLMEELRAPLADRLALSLVNRRQLRAGDFRQMDNGAVLLTDEARKTVLTAWQERKKEERLHPFLNEKAPFGLVPYLQAQMLARHLRGDIEAYPPWFWS
>NC_014625.1|WP_013384681.1|1866354_1866999_+|CRISPR-associated-protein-Cas4
MGAEEDAIPLSALQHAVYCLRQAALIHLERLWVANRFTAEGDVLHAVADKGGARRARGVRRVMSLPLASARLNLIGTADLVEFIPGPAGEVAFPVEYKRGKPKLHRADEVQLCAQALCLEEMTGQPVPEGALFYAHTKRRVTVPFDTELRALTQNAAQSLADILASRITPAPTAHKSRCRACSLHEACRPETYARPVLAWRDQMLARSLKDISE
>NC_014625.1|WP_013384680.1|1865401_1866352_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTTLSRRHDFVLIFDVTNGNPNGDPDAGNQPRLDPETGHGLVSDVSLKRKIRNYVELAHEGKDGHHIYVQEGAILNEKHRAAYIAKRPGDEKAKTDKKLNPKDDAEAKELRDWMCANFFDVRTFGAVMSTGINCGQVKGPVQMTFATSVERILPAEITITRMAATNEAEKKKAEEGSDGDQRTENRTMGRKHIVPYGLYVAHGFVSAKFAERTGFSEADLDLLLEALKNAFEHDRSAARGEMATRKLIVFKHENALGNAPAHELFDRVRIGRNLAGEFRPIGDSRLDNQPPARKFGDYLIEIDREALPAGVDIIEL
>NC_014625.1|WP_013384679.1|1863635_1865405_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSVLSSLSRAYERLPDAPPYGFSSEKIGFCIVLNADGSVHDVIDKRQDDKKRSPAMLLVPQAVKRTAGIAPNFLWDKTAYVLGVTAGEGKRTADEHAKFREMHVQWLAGTQDEGLLALLRFLDAWTADRFTAPVWPEDMRDQNIVFALASEYRERYIHERSGAKEIWQRLGTEGASDPQICLVSGDPAPIARLHPSIKGVWGAQTAGASLVSFNLDAFTSYGHEQGDNAPVSEVATFQYTTALNRFLEKDSGHRLQIGDASTVFWADASGLISEMAESLFAGMFDTPEAAHDDDSIETKKIAAKLERIRRGERLDEVEPQLTQGVRFHVLSLAPNAARLSVRFYWENDFAQLTRNYQAYLEDTKIEPPPRDGWPPLWRYLVELAVLNKRENIPPNLAGEWTRAILTRTPYPMTLLATALMRIRSDGEVNALRAAVLKSVLVRNFNKEAPVALNPTFSDSKGYLLGRLFAAYEEVQREALGRNVNATIKDKFYGAASASPQKVFATLDSGAQNHFTKLRKINAGRAVNLDQLIMSIMDQMSPDKDPIPAFLNAPEQGLFGLGYYHQRSDFFRKRDTKTDSVTETQPETTA
>NC_014625.1|WP_013384678.1|1862874_1863639_+|type-I-C-CRISPR-associated-protein-Cas5
MTYGIRLHIWGTHGLFTRPELKVERASYDVITPSAARGILEAIHWKPAIRWIVDRIHVLEPIRFQSIRRNEVGHKAPAGKIRAAMNRGDLADLQILVDQDRQQRASNVLVAPAYVIEAHFDLTAKAGPDDTVGKHLDIFNRRAAKGQCFNQPSLGTREFVAHFALVPPDAVIPSPDGHSWGAMLHAGQTNGAPRPSRAPEAETSDLGFGTPRDLGFMLWDIDHMAPGRPSMFFRATLRDGIVEIPAPGSPDIKR
>NC_014625.1|WP_013384677.1|1860255_1862493_+|CRISPR-associated-helicase/endonuclease-Cas3
MSENRIYAHSGKHADRSDWQLLSDHHDAVSALANARGVKIGLPLAASLAGALHDFGKNDPAFDQVLQGRDIRVDHSTAGGWLALKQAAPKDQPTAEAIAYTILGHHAGLPDKLNDQNSCMTARIETFNRTTNPIPQNLIAQEPPDFAPISHELFAKCAGPNPAFNLSLATRMVFSCLVDADFRDTESYYAKIDAYDRPRDWPSLPDLLPDLRERFDNHMNRLPDTGDVNPIRRHILHHVRAQASQRPGLFTLSVPTGGGKTLASMGFALDHAMAHGHRRIIYAIPYSSVTEQTAGTFRDLFGDVVLEHHAAIDANERDAGQREKLQLAMEDWAAPIVVTTNVQLFESLFSARPSRARKLHNIAGAVIILDEAQCLPRHLLLPTLRMIESLCTHYGCTVVLCTATQPAFDSRQLKEGGLALDDRELAPQPELLAQQLRRAHIRQGGEMSDQDLIDALAGTEQGFVIVNSRAHALELFKAAEQADIKGLVHLTTRQYPSDRRALIAEIREKLKSNQPCRLIATSLIEAGVDLDFPVGWRAEAGLDSCVQAAGRVNREGRRPLAGSILTVFSASDRPMPAAIKTLADAMRSTARRFDDLLNPAAMRDWFEHVYWQAGPKLLDAADIIGKLRVGRGGTDFAFRTIAEAYRMIDTTMVPVIIPGDAIAQREIDRLEVEAVSSGTLARALQHYTVQIPEKSREALRTNGKGDFAAQHLRGAQFFVLTDASLYRRDSGLWWEGADYIADSIW
>NC_014625.1|WP_013384676.1|1858105_1859845_-|PQQ-binding-like-beta-propeller-repeat-protein
MNPTTLLRTSAAVLLLTAPAAFAQVTPITDELLANPPAGEWINYGRNQENYRHSPLTQITADNVGQLQLVWARGMEAGAVQVTPMIHDGVMYLANPGDVIQALDAQTGDLIWEHRRQLPAVATLNAQGDRKRGVALYGTSLYFSSWDNHLIALDMETGQVVFDVERGSGEDGLTSNTTGPIVANGVIVAGSTCQYSPYGCFISGHDSATGEELWRNHFIPQPGEEGDETWGNDFEARWMTGVWGQITYDPVTNLVFYGSTGVGPASETQRGTPGGTLYGTNTRFAVRPDTGEIVWRHQTLPRDNWDQECTFEMMVANVDVQPSAEMEGLRAINPNAATGERRVLTGAPCKTGTMWSFDAASGEFLWARDTNYTNMIASIDETGLVTVNEDAVLKELDVEYDVCPTFLGGRDWSSAALNPDTGIYFLPLNNACYDIMAVDQEFSALDVYNTSATAKLAPGFENMGRIDAIDISTGRTLWSAERPAANYSPVLSTAGGVVFNGGTDRYFRALSQETGETLWQARLATVATGQAISYELDGVQYIAIGAGGLTYGTQLNAPLAEAIDSTSVGNAIYVFALPQ
>NC_014625.1|WP_013384675.1|1857160_1858066_+|LysR-family-transcriptional-regulator
MLDIRRLRYFKVIAECGSMAAAARQLNIAQPALSGHIAQIEEHYALQLFQRHARGVTLTPAGEALLRHARRILENLSEAEAELRHLSPVTTRAPVRLGLLPSWGASLAPAIIQATQLALPDIALRIVEMRHDESLDAIRQQNIDLAVVLEDTAPAQTQLLGSEALLYVSHVAVADRMSFRDVAALPLILPSAANLLRHQLDKAAKAAHVVLGPVMEIDGQDTIKSAVKAGVAGSIMSWNSIRNECLDHSLSACLIDDPEITRNVYLRRGEHVPANLAEAFFVVLRQVAEDNSYSRLRHART
>NC_014625.1|WP_193365312.1|1856423_1857089_+|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MAHVRRSFTRPSPEAIDAIRPYSPATVHEAQGKLGALDSRIKPLRHGWQICGSAITAQCHIGDNLMIFEAINLAKPGDVLVLSAGNNPEQGGFGDVLAAACRGKGIAGLIIDAGVRDGRGLRAGDFPVFSLGLCVKGTSKDTLGTVNMPVMVGNQLITPGDIIVADDDGVVVVRQEPFALAKACEAREASEAKLIEMHLSGRMEIEDRYDMMRAKGCVWED
>NC_014625.1|WP_013384684.1|1869255_1870707_-|aldehyde-dehydrogenase
MDLLGLLINNETLPASGGKTFTRKNPISGEVATEAAAATTDDAQRAADAAAAAFPEWSRSSPKTRRTVLLKAADMLEANGPQFVAAMGAEIGATAGWAMFNVTLAADMLREAASLVTQIKGEIIPSNRPGSTAMAVRQPAGVVLAMAPWNAPVILGVRALATPLACGNTVVMKTSELCPRTHHLIVSSLLQAGLPAGVLNAVSNAPEDAAEIVEALIAHPAVRRVNFTGSTRVGRIIAEKAGRYLKPALLELGGKAPFVVLDDADLDEAVAAAAFGAYMNQGQICMSTERIVVMESVADAFVEKLAVKARTLIAGDPREGKTPLGSVVDVSAAQRIEQLIKDATSKGAVLAAGGRIDGTLMDAALLDHVSPAMRIYGEESFGPVVTVVRVGSIDEAVRVANDTEYGLSSAVFGGDVNRALAVARRIESGICHVNGPTVHDEAQMPFGGTKASGYGRFGGNWGIHEFTELRWITVQDGHIHYPI
>NC_014625.1|WP_013384685.1|1870734_1871451_-|ABC-transporter-ATP-binding-protein
MLKIANLSLRYGRHLALQCVNVAVARGETVVILGANGAGKSSALKAVGGIVRPDAGSVVTLDDVPLLGAPAHQIVDRGLALVPEGRGVFADLTVAENLLLGANPKRARAGEGARRDFVYTLFPRLAERRRQTVRTMSGGEQQMVAIGRALMSNPDYLLLDEPSLGLAPIVVAELFAALRRVKETGVAILLVEQNVALSLSLADRGYLMEAGRIVGEGTADTLRNDPAVQNAFLGGSAA
>NC_014625.1|WP_013384686.1|1871443_1872172_-|ABC-transporter-ATP-binding-protein
MTVLLQVDGLKKQFGGLMAVNDLSFTVAEGEILALLGPNGSGKTTVMNLISGALPATAGRIQLDGVQISGLPAHRIARLGVARTFQLVRILPSLTVAENVIAALAFRAQPLWGDDAARAAEALLAEVGLAGRGGEYAADLTYIDQKRMELARALGAAPKLLLLDEWLSGLNPTELRVGIALILSLKARGMTIMLVEHIMEAVRALCPRTVVMNAGRKIADGPTNDVLADPAVVAAYLGGVDA
>NC_014625.1|WP_013384687.1|1872168_1873095_-|branched-chain-amino-acid-ABC-transporter-permease
MSARTLTGLGLAALALVMLAWLPSQLDAYGVGLLLGMTGYVTLATAWALFSGPTRYISLATVAFFGIGAYTVAVLSEAMPYPMVLITAALVGGAVALVVGLATLRLAGVYFVIFSFGLAELVRQLVTWYEVNVTGTLGRYIFLPITAQQIYWQLLALCALTFLIGWLIARSRLGLALRVIGDDEAVAAHTGINIAGAKLALFVISATLITLVGAIQAPRWTYVEPAMVFNPTTSFLTVIMALLGGAHRLWGPILGAIPLFLLFEWLSANFPNHYAIILGLLFITIVFLVPKGVLALVESAFARRRRLQ
>NC_014625.1|WP_013384688.1|1873091_1873967_-|branched-chain-amino-acid-ABC-transporter-permease
MLLTALISGLVLGGTYALVAMGLTLQYGISRIMNLAYGEFVIFAAFCAFVLFTAYGISPLVGMLLVLPAAFVVGYVLYGVMMQPLVKRSGKTGALDVDAILATFGLMFVVQGVMLVTFGANYTSYSYMNFGVNILGASIAANRLLAFVLAVVIGGALYMVLARTRWGTAIRAVAVAPEAAPLVGINVNHMARLAFALGMVLAAAGGIMISMYQTFNASMGVVFAMKALIIVIMGGQGNLLGALVAGLMLGLVETFVATYIDPGLTLAATYAIFLAVLLWRPSGLFGKGGRA
>NC_014625.1|WP_013384689.1|1874066_1875290_-|amino-acid-ABC-transporter-substrate-binding-protein
MIMFSRRLALRSFGATIAVAAAMTGFSASAQQTSIKIGYAVSLTGGNAGGAGITTLPNYRLWVSEVNAAGGLELPDGTRLPIEVVEYDDRSSTEEVVRAIERLATQDQVDFILSPWGTGFNLAVAPLLDRFGYPQLASASVTDRADEFAQRWPRSFWLLGGGADYAGGLADVLATATASGVMNGDVAIISVADGFGIDLINAARPAFAAAGLNIVMDRTYPPGTTDFSPMLNEAKSSSATAFVAFSYPPDTFALTQQAQVADYNPAVFYLGVGAPFPTYLGANGANAEGVMSLGGIDTSNAAMMDYRARHEAFAGQPPDSWASMITYAGLEILQEAIKRAGLDRDAVSAEIASGSFTTILGETQLQNNQLRDLWLTGQWQDGTFVAIEPTDRPGASAAIVPKQPWAN
>NC_014625.1|WP_013384690.1|1875456_1876335_+|helix-turn-helix-domain-containing-protein
MTLRPTHSHLDMLQEVAAQVIATTLDTAAWRMLGRRNRIFVLSAGTGSITYKGESHLLAAPGLVWVPAGAPAQLSLDAGSKGAWLAISDRAILQVDLAGNIAEDMRRFAQRPQFGRKISREMAARLIGLMALMAEELQRSEAGMQEMIRHHLSILAILLWRGSDLRPIAARPAPRVIFSEFLRLVDQHMRAHWRVSDYARYLGVSIDRLTSTVQRDTGQPPLAIIHTRLHAEACQMLETSAMQIAEISASLGFPDPAYFSRFFKRISGYSPRDYRNGLYREVTSGQAWAAWP
>NC_014625.1|WP_162467587.1|1876492_1877155_-|MBL-fold-metallo-hydrolase
MAAPASSQLANPLVPLPIAQEQLIAVDAVIVTHLHEDHWDAAASAALPKDMPLFAQNEEDADKIRNEGFTDVRVLTQQSQFNGIGLCKTGGQHGTDATLDVIPLGEVCGVVFSHPQYATLYIAGDTIWNDHVQTAIDSHQPDAIVLNIGNAVFMGYDPIIMGLEDAVAVHRAAPNAILIASHMEAINHCILSRQTLYDYAKANGFDTRLLIPADGETVSV
>NC_014625.1|WP_162467613.1|1877085_1877370_-|MBL-fold-metallo-hydrolase
MQITQVRNATLVVEYANTKFLIDPLFAAQGAFPGFAGSASSQLANPLVPLPIAQEQLIAVDAVIVTHLHEDHWPPPPVANSPIRLFRFLLRKSS
>NC_014625.1|WP_014537828.1|1877621_1878584_-|GlxA-family-transcriptional-regulator
MSQNEVLEVGLLIYPGVQMASVLGMTDLFEMANHVNGKDAAKTIRISHWKTTEDDGAPARVFDSFPLAESEPAVLVVPPAFGVPITPEVAQVYAPWLRQRHGGGTALGSVCTGSFLLAETGLLDGRRITTHWTVDAYLRARFPKVALDADQVIVEDGDIMTGGGAMSWIDLGLRIVDRLLGPAIMAETARSLLVDPPHREQRYSSTFAPRLNHGDAAILKVQHWLQATSAKEGDVERLANVAGLEGRTFLRRFKKATGLTTTEYFQRIRVGRAQELLQAGSQSIDQIAWDVGYSDPGAFRKVFTRIIGLSPGDYRKRLRT

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Crispr_ID: NC_014625_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014625_2

2034389-2034488

Orphan

Consensus_repeat	Method
GGACGAGGGCAAAGCCGCCTTCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014625_2

>merge|NC_014625|2|2034389-2034488|CRISPRCasFinder
GGACGAGGGCAAAGCCGCCTTCCGTTGGTATACGGAACTGAACACCGCGCAGCATGTGGGCGCGCCCGGCTTTATGGACGAGGGCCAAGCCGCCTTCCGT

>NC_014625|2|2|2034389-2034488|CRISPRCasFinder
GGACGAGGGCAAAGCCGCCTTCCGT	TGGTATACGGAACTGAACACCGCGCAGCATGTGGGCGCGCCCGGCTTTAT
GGACGAGGGCCAAGCCGCCTTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014625.1\|WP_013384838.1\|2036761_2038279_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|176463
NC_014625.1\|WP_013384827.1\|2026684_2027176_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131484
NC_014625.1\|WP_013384841.1\|2040254_2041598_-\|Ktr-system-potassium-transporter-B	unknown	unknown	gnl\|CDD\|273349
NC_014625.1\|WP_013384839.1\|2038278_2039340_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_014625.1\|WP_013384843.1\|2042378_2042726_-\|pore-forming-ESAT-6-family-protein	unknown	unknown	unknown
NC_014625.1\|WP_013384840.1\|2039336_2040242_+\|ribokinase	unknown	unknown	gnl\|CDD\|238571
NC_014625.1\|WP_013384836.1\|2034977_2035913_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_014625.1\|WP_044008068.1\|2025840_2026698_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
NC_014625.1\|WP_013384845.1\|2043977_2044184_-\|hypothetical-protein	unknown	unknown	unknown
NC_014625.1\|WP_162467563.1\|2033448_2033613_+\|hypothetical-protein	unknown	unknown	unknown
NC_014625.1\|WP_013384834.1\|2032253_2033462_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_014625.1\|WP_013384837.1\|2035909_2036758_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_014625.1\|WP_013384842.1\|2041601_2042264_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_014625.1\|WP_013384829.1\|2027498_2028338_+\|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
NC_014625.1\|WP_013384825.1\|2024693_2025839_+\|hypothetical-protein	unknown	unknown	unknown
NC_014625.1\|WP_013384832.1\|2028992_2029880_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_014625.1\|WP_158304741.1\|2027163_2027502_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224332
NC_014625.1\|WP_162467564.1\|2043080_2043503_+\|hypothetical-protein	unknown	unknown	unknown
NC_014625.1\|WP_013384833.1\|2029880_2032235_-\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|376836
NC_014625.1\|WP_013384824.1\|2023777_2024638_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
NC_014625.1\|WP_013384838.1\|2036761_2038279_+\|argininosuccinate-lyase	gnl\|CDD\|176463	cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria.	2.28477e-155
NC_014625.1\|WP_013384827.1\|2026684_2027176_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	1.65633e-34
NC_014625.1\|WP_013384841.1\|2040254_2041598_-\|Ktr-system-potassium-transporter-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.82325e-86
NC_014625.1\|WP_013384839.1\|2038278_2039340_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	4.86062e-177
NC_014625.1\|WP_013384840.1\|2039336_2040242_+\|ribokinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.42854e-44
NC_014625.1\|WP_013384836.1\|2034977_2035913_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.50085e-74
NC_014625.1\|WP_044008068.1\|2025840_2026698_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	2.47905e-108
NC_014625.1\|WP_013384834.1\|2032253_2033462_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.23373e-43
NC_014625.1\|WP_013384837.1\|2035909_2036758_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.79151e-84
NC_014625.1\|WP_013384842.1\|2041601_2042264_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.46251e-42
NC_014625.1\|WP_013384829.1\|2027498_2028338_+\|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	2.41878e-53
NC_014625.1\|WP_013384832.1\|2028992_2029880_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.02628e-13
NC_014625.1\|WP_158304741.1\|2027163_2027502_+\|hypothetical-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.96959e-21
NC_014625.1\|WP_013384833.1\|2029880_2032235_-\|PIG-L-family-deacetylase	gnl\|CDD\|376836	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis.	6.03897e-16
NC_014625.1\|WP_013384824.1\|2023777_2024638_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.88245e-38

>NC_014625.1|WP_162467563.1|2033448_2033613_+|hypothetical-protein
MAETIPVSRKYTCPPMARLTNFISPQGPQAEAAFFLDAGRKVKDHKNNSSELSY
>NC_014625.1|WP_013384834.1|2032253_2033462_-|ROK-family-protein
MVSAMTTAEGATEKRKRAIGANPERNRAHNRSLVLNLLREHGQIGRAAMARHTRLTQQAVGNIIDELLLEGMVIETGRLRVGRGQPARQFALNPCGPVSLGVEIAAGHLAIVFQALTGAIRARSIVPLADTAPAPVIAALVAQIEKLKSEAGAPEIIGMGVVMPGPFEIEGISAVGPATLKGWAGLDPAALIADATGIGTVVYENDATAAAVFESLHGVGRGLRDFCHVYFGVGLGLGLIHDGRPLRGAFGNAGEIGQIAVPPRGGGAAAALEDRASVFALRDFLRETRGAPDDLDLLASLDPAEDPALQDWIARAADQLSPVLAILENIFDPETITLGGLMPRPIIEAMIDCLQPLPVTVSSRSARGLPRLMLAQTGPYTAALGAAAMPFMDQNTTATLRQ
>NC_014625.1|WP_013384833.1|2029880_2032235_-|PIG-L-family-deacetylase
MLTDRNRLFRRIADPRMVRLARALGRLGSTVTMMNTGAHPDDEQTELLAWFSFGRNMRVVIACSTRGEGGQNALGPERGAALGLVRSRELEESARVIDADIAWLGHGPVDPVHDFGFSKDGKDTLERWGRARVIDRLVRAYREYRPDIVLPTFLDVPGQHGHHRAMTEAAEAALALAADPTYEVDGLAPWRVAKYYLPAWSGGGSTYDDELPPPPATVDVRVEGFDPVSGMRYDQIGEASRGYHASQGMGTWRATPRRHWALHGTAPEGDILDGLPATLGALADVAGAPAELALAASEIAKARAAFPDDQAMITALVAAHKAFSAPMGADFDALHGHRIRQKIAEVEAALALAAGVDVAAWLQDPLVPGRSATLAVWVNAGHATLRGIAAAASDGIAQKGGSEERDGLHLLTLAVPADLSPASRYLPGWARLGGNGILAASVTVEVGGITFALPVDLEEEPLLQPAASVTPSADAVLVNLNDPQPVHFAMTGTASAASLGLGSIDGLTVENADGHVTLTASGLAPGKTRLPISVAGAAGWQAKPINYGHIGRLAQVVPAGVDILALDLKIPDGRVGYIGGGADRVGLWLERMGVDVVDLDAEAFDAARANGFAGFDTLVVGIFTFGLRPDLAAATADLRAWVHAGGNLVTLYHRPWDNWKPDETTPAHMVVGSPSLRWRVTRPGAPVTILEPDHDLLAGPNTITHADFDGWDKERGLYFLSSWDQVYQPLLAMSDPDEQPLLGSLVTGRIGKGRHTHTALVLHHQMDRLVPGAFRLMANLIQPA
>NC_014625.1|WP_013384832.1|2028992_2029880_-|DMT-family-transporter
MKPATALDDQTSAAEMRQGMTWVLLDMALVSAMTVMVKKGGVDFPAVQMVFFRSLVGLVAVLPLVLRHWRVIRQTRNVKRNVFRVTCNAVALSCNWGALTILPLATANAIGFLRPLIVMVMAIFLLSERVTGWRWAGAALGLMGVGVMLLPSLTGMGEAQDHLLGYAFAGGAILFGAMATIQTRALKGENTTVMMVFYTVGLTLFTAIPAFFVWQPVALHHLPHLLGIGIIAQVAQYCYLRGYQLAPASKLAPLGYLSLIFATVMGYVFFDEVPTVYTAGGAIVIIIGLIVARRA
>NC_014625.1|WP_013384829.1|2027498_2028338_+|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase
MTTIFTGFDLAADILQGVRADIATLGRAPVCVTLFDDSSAPARAYLNRQITLARGAGIDLRPMGYADAQLAQLAADARVDAIATLYPLPSGLTPMGAAQAIGGGKDIDGQHPNHAGPLLLGDGTLRPAATAQASLICARAILGDLAGAEIVLIGASRLIGRPLAMLLLDAGATVTTCHIQTRDLARHTRAADLVISAAGVPALLTADNIAKGGRILDLAIIPKDGSLVGDADLPSLMGHAALVSAVPDGVGPVTTACLFANIAAAAKSRAMNLPLLQQD
>NC_014625.1|WP_158304741.1|2027163_2027502_+|hypothetical-protein
MGRVIVAFLPDIERSAILSRLSPQAHTPQTETDAARLDAIFADCRRLGYCMADGEYVEGVASLAVPVFDGMRRVTGALSIIFPTHGHDATEIAEKLAPRMQATASALGSALQ
>NC_014625.1|WP_013384827.1|2026684_2027176_+|helix-turn-helix-domain-containing-protein
MPATDENRALFEDDKEISLTLARGLDLIEAFAGDERRLSIPELAARTGMNRTVVRRLVRTLEKKGYASADRGQYELTPHILRLIRGFIEGRSLPQIVHPLLRAAAEDIGESVSFAMLDDTEAVYVAHAFLPARFTLNMVTVGSRAPLLPTAVGRVISRPPWDV
>NC_014625.1|WP_044008068.1|2025840_2026698_+|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase
MMALLLDGDALAAKLRQQMTERVAASGIRPVMATVLVGDNPASESYVARKHKDCREIGIEALRIRLPAGASPEQVLAEVARLNDDPSVDGFFVQFPLPEGHDEQAIAAAIRPDKDIDGLHPENLGRLITGKGGIPPCTPMAVLSLLRGYNVPLAGKHVVIIGRGLLVGRPLAMVLSAPGVDASVTLLHSQTPDIAAFTRNADVVIAAAGHPELIRADMIRAGATVVGVGITYGDDGAMVSDIAADVSAIAGAVTPAHGSVGSLTRAMLLQNLINLALEKHSHARN
>NC_014625.1|WP_013384825.1|2024693_2025839_+|hypothetical-protein
MNRILTALTASVAAFAGTTASAGEFATAHYTTPLADVCPSPFYIQKDWLAQAEHGGLYQMIGAGGTMESGAYRGPLGATGIELAILEGGGGIGLGDGETAYSALFNGNSKAGVIPHLGFQELDNAYIFSNLFPVVGVFVPLDIAPSGLIWDTGTYPDGFHSVDDLKAFGESGAGMIYVSTITRTFGLWLVEQGVSRDAFVEGYRGDLENFVANNGTWLNQGFVTTEVFNLSNGMNWAKPVDAVTVNELGYPTITGMVSVAQPRLEELAPCLELLVPIMQQAAVDYINDPAEVNQLIADFTAGGFSASWWRATPELNAYSAAAQRDRGIVGNGNNATIGDFDLDRAAAMLELVKPMLDDRANPDVTVDDVVTNRFINPEIGL
>NC_014625.1|WP_013384824.1|2023777_2024638_+|ABC-transporter-permease-subunit
MTEIAPKIRTEAYAPTPVAPPRTPAQKFAATFLPPLIMGVLVVLLYWVVRESLPAHRQFLMPSASGMWDKALSQPAVWAELGSRSLTTLTIALTGLAFSIPIGMALGIIMFRFFVMERAVYPFLVALQSIPIMAIIPLIQSALGFGFMPKVLIVILFTFFAIPTTLLLGLKSLDQGVLNLFRLQGASWWTMLRKAGLPSSAPALFAGFRISTSMAVIAAVTSELFFMAGRGGLGQMLVNAKTDFKYEQMYAALIASTTLSISIFVVFTLVGNRIFASWYETAERKS
>NC_014625.1|WP_013384836.1|2034977_2035913_+|sugar-ABC-transporter-permease
MSVTDPNGAAEGRPGLWNRLGIRTKHVLWAWAFLAIPVLFYVVIRFYPTFDAFWLSLTDGNIRRGPSFIGLENYARMYADPVFWKVFGNTFLYLLIGTPVSLVISFTIAYYLDRVRFMHGLIRALYFLPYLTTAAAMGWVWRFLYQPVPIGMINSFLTSIGLEQQPFLRSTDQALMAATIPAIWAGLGFQIIIFMAGLRAIPSSFYEAARIDGLGEWAILRKITLPLLKPTTIFLVVLSSIGFLRIFDQVQSLTANDPGGPLNATKPLVMLIYQTAFSSFRMGYASAQTVILFLVLLLISLLQLWLLRDKK
>NC_014625.1|WP_013384837.1|2035909_2036758_+|carbohydrate-ABC-transporter-permease
MSASTELAANRRNIRPGRVIAWTLLILGGFLMALPILYMFSTSLKPASDTFDLRLIPAAPTLANYIDILQDGRFIRWFYNSMIIAVAVTASNVFFDSLVGYTLAKFDFRGKNIVFIAILSTLMIPTEMLVIPWYMMSAKLGWLDSHWGIMFPGMMTAFGTFLMKQFFEGVPNDFLEAARVDGLNEFTIWWKIAMPMVLPAISALAIFTFLGNWTAFLWPLISTTSPDLYTLPVGLNSFAVGEAVRWERIMTGAALATIPTLLVFLALQRFIVRGVMLAGLKG
>NC_014625.1|WP_013384838.1|2036761_2038279_+|argininosuccinate-lyase
MSNPNDPRLTDGSVFPDPVYKETVLRPLFDGAKTHHVAAFGAIDRAHLVMLAETGILPAADAGKIAVARAALDTEIDPATLTYTGEVEDYFFLIEKELKARVGAELGGRLHTARSRNDIDHTLFKLGLRARLNLLIEQAIALHGAIVAKAEAESATLIVAYTHGQPAQPSTLGHYLSAMAEILARDIQRLFEAYRIVNLSPMGAAAITTSGFPINRERVAELLGFAAPLQNSYSCIASVDYITSTYSAMELMFLHLGRPIQDLQFWTSFEVGQIYVPNALVQISSIMPQKRNPVPIEHLRHLASQTVGRAHSMLTIMHNTPFTDMNDSEGETQETGYQAFEVAGRVLTLLAALVAQIKVDPARVASNIRRSCITITELADSTVRREGLSFREGHEIAAAVARAVVAAEGDLTTDGYAPFVTAFKHATGRDPQIDAAAFAQITSPEYFVAVRDRTGGPAPEALAQAISGYKTQNAGFAAQLATLIATQSAADADLATAFNLLKESA
>NC_014625.1|WP_013384839.1|2038278_2039340_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAKIELEGLVKDYGKVRAVHGIDLQIEDGEFVVFVGPSGCGKSTTLRMIAGLEDISGGALKIGGKVVNQLEPKQRNIAMVFQNYAIYPHMTVGQNIAFGLYTSKLPKAEKDRLVREAGETLGLTPYLDRRPAALSGGQRQRVAIGRAMVRSPSAFLFDEPLSNLDAQLRGQMRIEIKRLHQRLGTTIVYVTHDQVEAMTMADKIVVMRDGRILQVGSPLDLYENPVDVFTARFIGSPSMNVIEGESDGVNLRLGNSTLPGFGANLPAGKVMVGLRPHDLKVGVPGDATLEAVVTAIEPLGAETLVHMEVAGQPLVGSAPGRVLPVVGSTVTASVTRGVLYVFDAQTEKALGRA
>NC_014625.1|WP_013384840.1|2039336_2040242_+|ribokinase
MTSKNNGEGVLSLGRIYADLAFAELDAPPTPGREVYAQSFSLTPGGGAVITAAHLVAAGRPAHLLARLGTDPIAVAIASELTALDLDLTYVERAADAGPQLTVAIVTPEDRAFITRRSPRGMPSQAAAALHGAGLRHLHIAEYATLAENPALIVTAKMAGLTISLDPSWDESLIHGPALLAASSGVDVFFPNMDEATALTGKTAPAAALDILAQHFPVVALKCGSAGAMLAVGSTRFSVTAPKTVVVDTIGAGDSFNAGFLDAWLSGLAPEEVLRRAVQRGSQSVMAAGGTGCLSQMKSAS
>NC_014625.1|WP_013384841.1|2040254_2041598_-|Ktr-system-potassium-transporter-B
MKTAVKGWAARFLSLPPPLVVAGIYIATITMGASLMMLPMAQAMPMRWSDAFFMATSAVTVTGLAVVDVGSHLSLLGQAVLVTLVQLGGLGLMTFAVLILEIVGRPVGLMGEAYLREDLKQNALWRVGRLVRRIAVVVFAIEAVGIAILCLSFIPDLGFWPGLWAAIFHGIGAFNNAGFSIFRTGLMEYVADPIVNLVIPALFITGGIGYFVLHDLIYKRRWRYWSLNTRIMLAGTAVLIPWSVLMFAALEWTNPATLGGLDGIWPRIAASWFQGVTPRTAGFNTLDISGIHDSTAMLFISLMLIGGGATSTAGGIKVTTFVVMILATIAFFRRQTQLHIFGRGIGPDEVLKVMAIVAVSLVLVFCGVFLLSLSHDGHFLDIAFEVASAFSTTGLSRNYTPELNDFGRCVIMVIMFIGRLGPLTLGFFLATQLSPRVRYPQERIHIG
>NC_014625.1|WP_013384842.1|2041601_2042264_-|TrkA-family-potassium-uptake-protein
MARTEQSFVVIGLGAFGAAVASELARFGNRVMGIDLDERRVAQMVSVLPTALILDATDEIALREAGVDRYDVALVAIGQNIEASILATMNLRLLGLETVWVKAASRVHHRILVKIGADRVILPEQEMGRHIAQMLNNPVVQDYVSLGNGFNVVSIELPKALDGATPKSLGLVGREEPRLMAAMRGTQQLDIANPDLRFAPNDKLILLGRRVVLQAFSDGL
>NC_014625.1|WP_013384843.1|2042378_2042726_-|pore-forming-ESAT-6-family-protein
MIATSAFAQAPAMPDMDEAVAAANNQLGVLEYCAAEGHIESTAVEVQERLLQVLPPASDPTAVEAAYAAGKEGTIAVSGTEMSLADAATGQGTDVAALCQQLGSMVEQAGASLPN
>NC_014625.1|WP_162467564.1|2043080_2043503_+|hypothetical-protein
MKKLLGLLALCALAACVDADGRHVLGVSDEQQTFSLTLTGQGTDGARCWAEGHEGTSESLNDVFGRPQVRMKGAIQTGHVRCRMADGTTYMSLINQTVGLGWWSNIAMVRYVEGSMFLRATMDVPHGRRIYQSGMIRLPS
>NC_014625.1|WP_013384845.1|2043977_2044184_-|hypothetical-protein
MNTAPFVRIALRYIAGGLVSYGILTPEGATAFASDPQVIAQASIVLGAATAALTEGFYALAKRWGWRT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	24723-24756	6	0.824
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	37052-37085	7	0.794
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	30385-30418	7	0.794
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	33332-33365	7	0.794
NC_014625_1	1.5\|1868798\|33\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868798-1868830	33	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	45464-45496	7	0.788
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	18758-18791	8	0.765
NC_014625_1	1.9\|1869071\|34\|NC_014625\|PILER-CR	1869071-1869104	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	539756-539789	8	0.765
NC_014625_1	1.13\|1869064\|34\|NC_014625\|CRISPRCasFinder,CRT	1869064-1869097	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	539756-539789	8	0.765
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_CP019707	Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence	62089-62122	9	0.735
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_CP007740	Bacillus methanolicus MGA3 plasmid pBM69, complete sequence	16414-16447	9	0.735
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_LT222315	Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T3	108477-108510	10	0.706
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_LT963398	Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence	75521-75554	10	0.706
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	CP034538	Pseudomonas poae strain CAP-2018 plasmid unnamed	107853-107886	10	0.706
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NC_008738	Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence	62733-62766	10	0.706
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NC_007678	Salinibacter ruber DSM 13855 plasmid pSR35, complete sequence	14814-14847	10	0.706
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_AP022559	Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence	821-854	10	0.706
NC_014625_1	1.15\|1868930\|35\|NC_014625\|CRT	1868930-1868964	35	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	984065-984099	10	0.714
NC_014625_1	1.4\|1868732\|34\|NC_014625\|PILER-CR,CRISPRCasFinder,CRT	1868732-1868765	34	NZ_CP029542	Streptomyces sp. NEAU-S7GS2 plasmid unnamed1, complete sequence	9497-9530	11	0.676

1. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.824

tcccata-aaaaaacccgcctctaagggcgggctg	CRISPR spacer
-gcgacacaaaaaacccgcctctaagggcgggtta	Protospacer
  * *.* ************************.*.

2. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 7, identity: 0.794

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
cgacacaaaaaaacccgcctctaaggacgggtta	Protospacer
.  **.********************.****.*.

3. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 7, identity: 0.794

-tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gcttcat-aaaaaacccgcctctaaaggcgggtta	Protospacer
 ...*** *****************.******.*.

4. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 7, identity: 0.794

-tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gcttcat-aaaaaacccgcctctaaaggcgggtta	Protospacer
 ...*** *****************.******.*.

5. spacer 1.5|1868798|33|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.788

tgcttccg--gtaaaactccaccgcagcgtggaac	CRISPR spacer
--ccgccgacgtgaaacaccaccgcagcgtggaag	Protospacer
  *. ***  **.**** ****************

6. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gggcaacaaaaaacccgcctcgaggggcgggctt	Protospacer
   **  ************** *.*********

7. spacer 1.9|1869071|34|NC_014625|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagcaggcgcggcgcagacgacaggcgggacg	CRISPR spacer
atcgacgggcgcggcgcagacgacaggcaagacc	Protospacer
 .*..*.*********************..***

8. spacer 1.13|1869064|34|NC_014625|CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagcaggcgcggcgcagacgacaggcgggacg	CRISPR spacer
atcgacgggcgcggcgcagacgacaggcaagacc	Protospacer
 .*..*.*********************..***

9. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019707 (Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence) position: , mismatch: 9, identity: 0.735

tcccataa------aaaaacccgcctctaagggcgggctg	CRISPR spacer
------aaaggcttaaaaaaccgcctctaagggcggtctt	Protospacer
      **      ***** **************** **

10. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007740 (Bacillus methanolicus MGA3 plasmid pBM69, complete sequence) position: , mismatch: 9, identity: 0.735

tcccataaaaaaacccgcctctaagg-gcgggctg	CRISPR spacer
aaccataaaaatacccccctctaaggtgtttgtt-	Protospacer
  ********* **** ********* *.  *.*

11. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT222315 (Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T3) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
caaaacgaaaaaacccgcctattagggcgggttt	Protospacer
.   *..************* * ********.*

12. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963398 (Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
caaaacgaaaaaacccgcctattagggcgggttt	Protospacer
.   *..************* * ********.*

13. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to CP034538 (Pseudomonas poae strain CAP-2018 plasmid unnamed) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
acttcacaaaaaacccgcctttaatggcgggttt	Protospacer
 *..   *************.*** ******.*

14. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NC_008738 (Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
agaaaacaaaaaacccgcctcaatgggcgggttt	Protospacer
    *  ************** * *******.*

15. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NC_007678 (Salinibacter ruber DSM 13855 plasmid pSR35, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
agtcagtaaaaaacccgcctttacgggcggggca	Protospacer
  .**  *************.** ******* ..

16. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gaaaaataaaaaacccgcctcaaaaggcggggtc	Protospacer
    *  ************** **.****** *

17. spacer 1.15|1868930|35|NC_014625|CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

gcgaccaatggcgcgtagcgacaccctatcaggac	CRISPR spacer
acgacgaatggcgcgtcgcgacacccatctgcaac	Protospacer
.**** ********** *********  ... .**

18. spacer 1.4|1868732|34|NC_014625|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029542 (Streptomyces sp. NEAU-S7GS2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
cgtaacgaaaaaacccgcctcggagggcgggact	Protospacer
. . *..************** .******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

579083 : 587502

Synechococcus_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193365330.1\|579083_581246_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	3.1e-12	38.0
WP_013383421.1\|581400_581754_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_013383422.1\|582175_582766_+	NYN domain-containing protein	NA	NA	NA	NA
WP_013383423.1\|583818_584283_+	ribonuclease HI	J9Q745	Salmonella_phage	1.6e-35	52.1
WP_013383424.1\|584343_585228_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	9.0e-11	37.3
WP_013383425.1\|585224_585596_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_013383426.1\|585592_586489_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	2.1e-07	31.0
WP_013383427.1\|586488_586980_-	peptide deformylase	K4JRM9	Caulobacter_phage	1.1e-13	36.4
WP_013383428.1\|586980_587502_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.4e-26	47.9

DBSCAN-SWA_2

1049908 : 1113326

Acinetobacter_phage(16.67%)

portal,protease,head,tRNA,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013383886.1\|1049908_1050814_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_013383887.1\|1050893_1051622_+	UMP kinase	NA	NA	NA	NA
WP_013383888.1\|1051706_1052468_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.3e-42	41.3
WP_013383889.1\|1052478_1052718_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013383890.1\|1052729_1053398_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013383893.1\|1055259_1056612_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013383894.1\|1057081_1059907_+	ribonuclease E/G	NA	NA	NA	NA
WP_013383895.1\|1060053_1060719_-	transcriptional repressor LexA	NA	NA	NA	NA
WP_013383896.1\|1060790_1061954_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_013383897.1\|1061950_1062421_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_013383898.1\|1062420_1063230_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.6e-60	51.0
WP_013383899.1\|1063226_1063892_-	uracil-DNA glycosylase	J9QYL4	Leporid_alphaherpesvirus	3.1e-40	47.5
WP_013383900.1\|1063888_1064905_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.4e-52	37.3
WP_044008142.1\|1064901_1065495_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.0e-58	57.0
WP_013383902.1\|1065651_1066380_+	divergent polysaccharide deacetylase family	NA	NA	NA	NA
WP_162467579.1\|1066297_1066594_+	hypothetical protein	NA	NA	NA	NA
WP_013383904.1\|1066590_1068099_-	anthranilate synthase component I	NA	NA	NA	NA
WP_013383905.1\|1068111_1069950_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_013383906.1\|1070025_1071195_-	aminotransferase	NA	NA	NA	NA
WP_013383907.1\|1071198_1071717_-	xanthine phosphoribosyltransferase	M4T1R9	Cellulophaga_phage	1.5e-05	29.2
WP_013383908.1\|1071742_1072561_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_013383909.1\|1072736_1073342_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_013383910.1\|1073458_1073989_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_013383911.1\|1073994_1074435_+	DUF192 domain-containing protein	NA	NA	NA	NA
WP_014537602.1\|1074673_1075738_+	GDP-mannose 4,6-dehydratase	A0A1D8KUT0	Synechococcus_phage	8.3e-104	56.4
WP_013383915.1\|1076946_1077261_+	H-NS histone family protein	NA	NA	NA	NA
WP_013383916.1\|1077470_1077782_-	ETC complex I subunit	NA	NA	NA	NA
WP_193365335.1\|1077954_1080108_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_013383918.1\|1080143_1080821_+	hypothetical protein	NA	NA	NA	NA
WP_014537604.1\|1080959_1081409_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013383920.1\|1081405_1082008_-	peptidase M50	NA	NA	NA	NA
WP_013383921.1\|1082004_1082817_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013383922.1\|1082819_1083632_-	ABC transporter permease	NA	NA	NA	NA
WP_013383923.1\|1083628_1084555_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.7e-18	28.0
WP_013383926.1\|1087050_1087887_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013383927.1\|1088048_1088276_+	hypothetical protein	NA	NA	NA	NA
WP_013383928.1\|1088311_1088896_-	hypothetical protein	NA	NA	NA	NA
WP_013383929.1\|1088958_1089138_+	DUF3553 domain-containing protein	NA	NA	NA	NA
WP_013383930.1\|1089409_1090741_+	trigger factor	NA	NA	NA	NA
WP_013383931.1\|1090832_1092794_-	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
WP_013383932.1\|1092988_1093564_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_013383934.1\|1093860_1094247_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_013383935.1\|1094387_1094705_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_044008015.1\|1094852_1095800_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_013383937.1\|1095812_1096550_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
WP_013383938.1\|1096773_1097007_+	acyl carrier protein	A0A2I7RIC8	Vibrio_phage	9.6e-05	40.3
WP_013383939.1\|1097127_1097343_+	DUF4287 domain-containing protein	NA	NA	NA	NA
WP_013383942.1\|1098678_1099821_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_013383943.1\|1099991_1100330_+	hypothetical protein	NA	NA	NA	NA
WP_049776461.1\|1100277_1101618_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	4.6e-67	36.5
WP_013383945.1\|1101709_1102873_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.6e-58	38.8
WP_013383946.1\|1102859_1103081_+	hypothetical protein	NA	NA	NA	NA
WP_013383947.1\|1103081_1103609_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.3e-29	53.7
WP_013383948.1\|1103617_1104748_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	8.1e-65	38.8
WP_013383951.1\|1105349_1105682_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013383952.1\|1105776_1106067_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013383953.1\|1106078_1106495_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_013383954.1\|1106491_1106809_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013383955.1\|1106813_1107014_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013383956.1\|1107006_1107618_+\|tail	phage tail tape measure protein	E7EKW4	Edwardsiella_phage	4.9e-08	55.9
WP_013383957.1\|1107630_1108263_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.6e-52	47.1
WP_013383958.1\|1108259_1109105_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.7e-46	38.8
WP_013383959.1\|1109101_1109515_+	peptidase P60	F4YXU4	Roseobacter_phage	3.3e-16	34.1
WP_013383960.1\|1109516_1113326_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LL82	Rhodobacter_phage	4.1e-201	38.0

DBSCAN-SWA_3

1158489 : 1186196

Paracoccus_phage(25.0%)

portal,protease,integrase,terminase,capsid,tail

attL 1152282:1152298|attR 1180856:1180872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1152282:1152298	attL	NA	NA	NA	NA
WP_013384001.1\|1158489_1159575_-\|integrase	tyrosine-type recombinase/integrase	H6WBN7	Rhodobacter_phage	3.2e-87	51.4
WP_013384002.1\|1159754_1160003_-	hypothetical protein	NA	NA	NA	NA
WP_013384003.1\|1160643_1161036_-	hypothetical protein	NA	NA	NA	NA
WP_013384004.1\|1161032_1161626_-	hypothetical protein	NA	NA	NA	NA
WP_013384005.1\|1161668_1162343_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013384006.1\|1162355_1162568_-	hypothetical protein	NA	NA	NA	NA
WP_013384007.1\|1162839_1163454_+	hypothetical protein	NA	NA	NA	NA
WP_014537628.1\|1163594_1164230_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013384009.1\|1164604_1164895_+	hypothetical protein	A0A1X9HW32	Ruegeria_phage	2.5e-26	62.4
WP_014537630.1\|1164891_1165038_+	hypothetical protein	NA	NA	NA	NA
WP_044008019.1\|1165079_1165676_+	hypothetical protein	NA	NA	NA	NA
WP_013384010.1\|1165672_1165960_+	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	6.4e-19	50.5
WP_013384014.1\|1166903_1167440_+	hypothetical protein	NA	NA	NA	NA
WP_013384015.1\|1167436_1168084_+	hypothetical protein	NA	NA	NA	NA
WP_013384016.1\|1168535_1168733_-	CsbD family protein	NA	NA	NA	NA
WP_013384017.1\|1168884_1169646_+	hypothetical protein	NA	NA	NA	NA
WP_044008020.1\|1169763_1170456_+	DUF1441 family protein	A0A0K1Y6X7	Rhodobacter_phage	5.7e-21	35.0
WP_014537634.1\|1170452_1170632_-	hypothetical protein	NA	NA	NA	NA
WP_013384020.1\|1170776_1172930_+\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	6.6e-116	35.3
WP_013384021.1\|1172926_1173121_+	hypothetical protein	NA	NA	NA	NA
WP_013384022.1\|1173122_1174634_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	8.9e-67	34.7
WP_013384023.1\|1174626_1176756_+\|protease	Clp protease ClpP	A0A0A8IKZ4	Aurantimonas_phage	6.5e-31	40.0
WP_013384024.1\|1176834_1177179_+	DUF2190 family protein	NA	NA	NA	NA
WP_013384025.1\|1177182_1177545_+	hypothetical protein	NA	NA	NA	NA
WP_013384026.1\|1177537_1177978_+	hypothetical protein	NA	NA	NA	NA
WP_013384027.1\|1177990_1178419_+\|capsid	phage capsid protein	A0A0U2BX03	Paracoccus_phage	3.4e-24	46.2
WP_044008021.1\|1178418_1178814_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013384028.1\|1178909_1179176_+	hypothetical protein	NA	NA	NA	NA
WP_013384029.1\|1179150_1180665_+	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	3.8e-09	44.6
WP_013384030.1\|1180667_1181324_+	hypothetical protein	G8DH55	Emiliania_huxleyi_virus	6.0e-20	32.1
1180856:1180872	attR	NA	NA	NA	NA
WP_013384031.1\|1181376_1181988_+	hypothetical protein	NA	NA	NA	NA
WP_013384032.1\|1181969_1182377_+	hypothetical protein	NA	NA	NA	NA
WP_013384033.1\|1182373_1185865_+	hypothetical protein	A0A0U2C146	Paracoccus_phage	7.2e-120	39.6
WP_013384034.1\|1185878_1186196_+\|tail	phage tail assembly chaperone	M4QRN4	Micromonas_pusilla_virus	4.3e-08	47.4

DBSCAN-SWA_4

1304075 : 1311298

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044008153.1\|1304075_1304744_+	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	7.5e-18	33.3
WP_013384143.1\|1304790_1305825_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	4.7e-27	31.1
WP_013384144.1\|1305927_1306527_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.9e-33	40.4
WP_013384145.1\|1306797_1307493_+	EamA family transporter RarD	NA	NA	NA	NA
WP_044008154.1\|1307477_1308032_-	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	1.3e-12	30.8
WP_014537688.1\|1308181_1309408_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RVP5	Clostridium_phage	8.4e-07	44.2
WP_193365337.1\|1309492_1311298_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	3.5e-38	27.6

DBSCAN-SWA_5

1907754 : 1980370

Paracoccus_phage(18.75%)

portal,protease,head,terminase,capsid,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148225652.1\|1907754_1908511_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_162467614.1\|1908988_1909168_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_013384719.1\|1909185_1909869_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_013384721.1\|1910474_1911230_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_013384722.1\|1911226_1912180_+	TIGR03885 family FMN-dependent LLM class oxidoreductase	NA	NA	NA	NA
WP_014537839.1\|1913163_1914957_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_013384724.1\|1915182_1917216_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_013384725.1\|1917331_1918813_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_013384726.1\|1918913_1919783_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_013384727.1\|1919783_1921841_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_013384728.1\|1921848_1923045_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_013384729.1\|1923200_1924988_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_013384730.1\|1925136_1926030_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	2.7e-63	46.6
WP_044008057.1\|1926299_1927256_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_049776473.1\|1927556_1928018_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013384734.1\|1929476_1930232_+	MFS transporter	NA	NA	NA	NA
WP_049776474.1\|1930167_1930743_+	MFS transporter	NA	NA	NA	NA
WP_013384736.1\|1930770_1931682_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_013384737.1\|1931820_1932882_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-12	26.0
WP_013384738.1\|1932892_1933975_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.1e-18	31.8
WP_013384739.1\|1934008_1935499_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013384740.1\|1935570_1936515_+	ABC transporter permease	NA	NA	NA	NA
WP_013384741.1\|1936514_1937393_+	ABC transporter permease	NA	NA	NA	NA
WP_013384742.1\|1937421_1938846_+	amidohydrolase family protein	NA	NA	NA	NA
WP_162467589.1\|1939218_1941060_-	DUF927 domain-containing protein	NA	NA	NA	NA
WP_013384745.1\|1941578_1942157_-	hypothetical protein	NA	NA	NA	NA
WP_013384746.1\|1942214_1943666_-	hypothetical protein	NA	NA	NA	NA
WP_013384747.1\|1943770_1943992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013384748.1\|1944937_1945474_+	hypothetical protein	NA	NA	NA	NA
WP_013384749.1\|1945628_1946795_+	hypothetical protein	NA	NA	NA	NA
WP_013384750.1\|1946954_1949393_+	AAA family ATPase	A0A2K9R7H3	Dishui_lake_phycodnavirus	3.8e-27	29.8
WP_156771219.1\|1950303_1950441_+	hypothetical protein	NA	NA	NA	NA
WP_013384751.1\|1950473_1952162_+	recombinase family protein	R9TP69	Rhizobium_phage	1.8e-84	36.4
WP_014537875.1\|1959509_1959824_-	H-NS histone family protein	NA	NA	NA	NA
WP_013384754.1\|1959976_1960246_-	hypothetical protein	NA	NA	NA	NA
WP_013384755.1\|1960247_1961399_-	hypothetical protein	NA	NA	NA	NA
WP_013384756.1\|1961395_1961800_-	hypothetical protein	NA	NA	NA	NA
WP_013384757.1\|1962014_1962596_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_013384758.1\|1962604_1963030_-\|tail	phage tail assembly chaperone	M1PRG4	Prochlorococcus_phage	1.3e-07	46.7
WP_013384759.1\|1963032_1966539_-	hypothetical protein	A0A0U2C146	Paracoccus_phage	3.6e-87	34.1
WP_013384760.1\|1966540_1966969_-	hypothetical protein	A0A0U2C0Z1	Paracoccus_phage	2.1e-18	39.6
WP_013384761.1\|1966947_1967568_-	hypothetical protein	NA	NA	NA	NA
WP_013384762.1\|1967662_1967992_+	hypothetical protein	NA	NA	NA	NA
WP_013384763.1\|1967992_1968643_-	hypothetical protein	NA	NA	NA	NA
WP_013384764.1\|1968639_1971681_-\|tail	phage tail tape measure protein	A0A2D0W9N5	Bordetella_phage	9.5e-44	39.2
WP_013384765.1\|1971677_1971824_-	hypothetical protein	NA	NA	NA	NA
WP_013384766.1\|1971856_1972240_-	gene transfer agent family protein	A0A141GEX0	Brucella_phage	9.9e-07	33.3
WP_013384767.1\|1972239_1972698_-	hypothetical protein	NA	NA	NA	NA
WP_013384768.1\|1972928_1973339_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013384769.1\|1973338_1973734_-	hypothetical protein	NA	NA	NA	NA
WP_013384770.1\|1973747_1974095_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013384771.1\|1974091_1974619_-\|head,tail	phage gp6-like head-tail connector protein	A0A141GEW4	Brucella_phage	5.0e-09	26.5
WP_013384772.1\|1974669_1975848_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	5.7e-53	35.7
WP_013384773.1\|1975870_1976524_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.3e-34	42.7
WP_014537879.1\|1976533_1977694_-\|portal	phage portal protein	B4UTP1	Rhizobium_phage	3.4e-10	24.5
WP_013384775.1\|1977690_1979472_-\|terminase	phage terminase large subunit	B0VK29	Azospirillum_phage	1.0e-138	44.3
WP_044008062.1\|1979561_1979846_-	hypothetical protein	NA	NA	NA	NA
WP_060486270.1\|1979980_1980370_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	4.5e-07	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014625

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection