CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014622	Paenibacillus polymyxa SC2, complete sequence	1 crisprs	csa3,WYL,DEDDh,cas3,DinG	0	0	6	0
NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	0 crisprs	cas14j,cas14k,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014622_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014622_1

5292865-5292963

Unclear

Consensus_repeat	Method
GCCGAGCGGCCTTGACCTCCGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014622_1

>merge|NC_014622|1|5292865-5292963|CRISPRCasFinder
GCCGAGCGGCCTTGACCTCCGCGTTCAGAACCACTGCTGCCGCGATCATATCCGCCGCGTCCGCTGCTTTGCCCCGCCGAGCGGCCTTGACCTCCGCGT

>NC_014622|1|1|5292865-5292963|CRISPRCasFinder
GCCGAGCGGCCTTGACCTCCGCGT	TCAGAACCACTGCTGCCGCGATCATATCCGCCGCGTCCGCTGCTTTGCCCC
GCCGAGCGGCCTTGACCTCCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014622.2\|WP_013373487.1\|5290446_5291460_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_014622.2\|WP_013373488.1\|5291573_5292518_-\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_014622.2\|WP_013373483.1\|5286279_5286756_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NC_014622.2\|WP_013373491.1\|5295280_5295925_+\|immunity-50-family-protein	unknown	unknown	gnl\|CDD\|379735
NC_014622.2\|WP_013373486.1\|5289150_5290296_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_014622.2\|WP_013373496.1\|5298132_5298567_+\|immunity-26/phosphotriesterase-HocA-family-protein	unknown	unknown	gnl\|CDD\|379725
NC_014622.2\|WP_016324832.1\|5280804_5282937_-\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239167
NC_014622.2\|WP_013373481.1\|5283293_5284139_-\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NC_014622.2\|WP_013373490.1\|5294623_5295241_+\|hypothetical-protein	unknown	unknown	unknown
NC_014622.2\|WP_013373498.1\|5299543_5300203_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224119
NC_014622.2\|WP_013373484.1\|5286872_5287766_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_014622.2\|WP_016324835.1\|5287992_5289012_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NC_014622.2\|WP_013373482.1\|5284525_5285887_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NC_014622.2\|WP_013373497.1\|5298635_5299175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379650
NC_014622.2\|WP_013373492.1\|5295917_5296325_+\|hypothetical-protein	unknown	unknown	unknown
NC_014622.2\|WP_013373495.1\|5297569_5298130_+\|hypothetical-protein	unknown	unknown	unknown
NC_014622.2\|WP_016324831.1\|5279528_5280758_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NC_014622.2\|WP_013373499.1\|5300368_5302003_-\|hypothetical-protein	unknown	unknown	unknown
NC_014622.2\|WP_013373493.1\|5296374_5296881_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NC_014622.2\|WP_013373494.1\|5296910_5297540_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014622.2\|WP_013373487.1\|5290446_5291460_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.1076e-69
NC_014622.2\|WP_013373488.1\|5291573_5292518_-\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.00751e-83
NC_014622.2\|WP_013373483.1\|5286279_5286756_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	3.71693e-87
NC_014622.2\|WP_013373491.1\|5295280_5295925_+\|immunity-50-family-protein	gnl\|CDD\|379735	pfam15594, Imm50, Immunity protein 50. A predicted immunity protein with an all-beta fold. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-HHH or Ntox24 families.	3.51285e-31
NC_014622.2\|WP_013373486.1\|5289150_5290296_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.3578e-62
NC_014622.2\|WP_016324832.1\|5280804_5282937_-\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239167	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_014622.2\|WP_013373481.1\|5283293_5284139_-\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	1.46499e-90
NC_014622.2\|WP_013373496.1\|5298132_5298567_+\|immunity-26/phosphotriesterase-HocA-family-protein	gnl\|CDD\|379725	pfam15428, Imm26, Immunity protein 26. A predicted immunity protein with mostly all-beta fold and several conserved hydrophobic residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-URI1 or Tox-HNH family. The protein is also found heterogeneous poly-immunity loci.	1.16443e-23
NC_014622.2\|WP_013373498.1\|5299543_5300203_+\|hypothetical-protein	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0.00222798
NC_014622.2\|WP_013373484.1\|5286872_5287766_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.81961e-131
NC_014622.2\|WP_016324835.1\|5287992_5289012_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	2.64851e-167
NC_014622.2\|WP_013373482.1\|5284525_5285887_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	9.69092e-133
NC_014622.2\|WP_013373497.1\|5298635_5299175_-\|hypothetical-protein	gnl\|CDD\|379650	pfam14568, SUKH_6, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	0.00118957
NC_014622.2\|WP_016324831.1\|5279528_5280758_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.61328e-43
NC_014622.2\|WP_013373493.1\|5296374_5296881_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	0.000159841

>NC_014622.2|WP_013373488.1|5291573_5292518_-|cation-transporter
MQEQDMGKRAMVSAWISLISNILLTGIKIIAGLMFNSKVLVADGVHNAGDVIASATALGAMRISSQPPDEDHPYGHGKAEVIGASVVAVILFGAGIFIGYHSIAALFEPMPQEHILALVAAIISLLWKQWLYLYTIRIGRAANSQGLIATAKDHLADVYASGAAVLGIGLGLIGEHWDIPILSYGDPIAGFVVALLVLKLAWEMGRESIDVLMEKAIATEEIESYAAAALSVAEVQRIDRIRAREHGHYIIVDIRASVDASLTIQQGHDIIRLIKRAVMKREPRVYEVLVHLNPWYADDLHAVKSTEKEPEDKV
>NC_014622.2|WP_013373487.1|5290446_5291460_-|LCP-family-protein
MRKFLKWLGISVTATVLLVGGYYAYSIYHFTNQISVASGQDSKFKPQTQTSTNVQPVEVSLPPEWDGTERVNILLLGGDSRGEDSGRSDSVMVASVDPVTKKATLMSILRDTYVKIPGHGQSRLNAAFSYGGPDLTRQTVSDLLGIPIQYYVYTDFNGFIALVDSVGGIDLDVEKDMHYTSKADKHQFDIDLKKGMQHMDGKTALQYVRFRHDATSDFTRTERQRKFITELGSKIQSTSSLIKLPSILNSISPYIETNLSTTEMLQLASLGFNIDAKTVAKQQIPPNELVRGETIKGAQVLGVDERKLKRFIQNLFEQENKPVTTTVEAATTTNDTP
>NC_014622.2|WP_013373486.1|5289150_5290296_-|AI-2E-family-transporter
MEITPAWKDRFKKFFLNNKFVLFLLVLLLIGLNILVLTKISYIFTPVIVLLKTIILPVILSGVLYYLLNPLVDVLERNKVKRVYSIVVLFLLIIGIIAIVITSVVPVIRDQIQGLIQNVPAYTEQVKQQFERLIGSNFVNQFQNTIQIDPSELASKASEKLSGFINNAWTGVGSFLGVITETVLAIATVPFILFYLLKDGHKLPQWILKMLPPMFRKETDRIMTEMNHQVSSYIRGQIIVSFCIGVLLYIGYLIIGLDYSLTLAVIASFTSVVPYLGPVIAITPALIVAIVTSPIMLLKMVIVWTVVQLIEGKFISPQIMGKSLRVHPITIIFVILTAGNLFGVVGIVLAVPGYAVLKVIVTHLFSFFQKRSHLYEADKVK
>NC_014622.2|WP_016324835.1|5287992_5289012_-|LLM-class-flavin-dependent-oxidoreductase
MIKLSILDQSPVSEGMTHAQALQKTAELAIEAERLGYHRFWVSEHHAASNLAGSSPEVLISHLAARTSTIRVGSGGVMLPHYSAYKVAENFRVLEGLYPGRIDLGLGRAPGGMPIATRALQEGKMRGGVDLYPEQLDDLLAYLHDSTGNQHRFGSLQAMPLVETVPEMWLLGSSGDSAGLAAERGVGFAFAQFINGEGGTGAMKGYQESFQPSQHSEQPRSLVAVFAICADTEEEANRLASSMDLSLVLLEQGTRSAGTPSVEKALAYPYTPYDRMRIRENRKRMVVGSPEQVKRQLEQLCKNYNAQEIMVASIIHDFDAKMKSIRLMAEAFGLSSVQA
>NC_014622.2|WP_013373484.1|5286872_5287766_-|ABC-transporter-ATP-binding-protein
MFRLKTANLDIAYEDRLIVEDLNVEIPQGKITALVGANGSGKSTILKTMARIMNPKGGSVLLDGKSIHKQSTREVAKQLAILPQNPTAPEGLTVTELVSYGRFPYQKGFGSMKAEDRKMVEWAIQVTGMSEFHDRPIDQLSGGQRQRAWIAMALAQDTDILFLDEPTTFLDMAHQLEVLHLLEYLNTSAERTIVMVVHDLNHAARYAQHMIAIKKGKAKAVGAPTEVMTPDVLREVFGIEADIVTDPRTGVPLCLPYALAGQPAVSQAVKGMNVEEKQTVGSVAERRDARPQVAARG
>NC_014622.2|WP_013373483.1|5286279_5286756_-|glutathione-peroxidase
MSVYSYNAVTPANQEVSLETYTGKVLVIVNTASKCGLTPQYGDLQKLYDEYKDRGLVVLGFPCNQFGGQEPGSSEEAAEFCQLNYGVNFPVFAKVDVNGPDTAALFEYLKKQQPGEQEDGTIQWNFTKFIVNREGVPVGRFEPKESPEAMKAAIEQLL
>NC_014622.2|WP_013373482.1|5284525_5285887_-|FAD-dependent-oxidoreductase
MKVAVIGCTHAGTAAIVNTAKCYPDAEITVYERNDNISFLSCGIALYVGGVVKDPHGLFYSSPDQLADMGVVTKMLHEVTSVDTAGKTLHARNLQTGEEFTDTFDKLIVTTGSWPIIPKLEGIELDHILLCKNYNHSNEIIEKAQHVQNITVVGAGYIGVELVEAFQMNGKNVTLIDSADRILNKYLDHEFTDRIENSLREHGIKLVLGETVSRFEGTNGKVSKVVTSKGEYETELVILCIGFRPQTDLLKGQVDMLPNGAIIVDNYMQSSCPDVFAAGDSCAIRYNPTGKTAYIPLATNAVRMGTLVARNLVQPTIAYMGTQGTSGIKIYEDNIAGTGMTEAAATDEGMTVEAVTIEDSYRPEFMPTSEKVLLKVVYEQETRRIVGAQIMSKVDLTQSINTLSVAIQNHMTIDQLAFVDFFFQPHYNKPWNFLNAAGLQALPTISERNPVTV
>NC_014622.2|WP_013373481.1|5283293_5284139_-|formate/nitrite-transporter-family-protein
MASYKPGQIAEKTVETGVAKANNPWTVAVVLGFLAGAFIALGFLLDIRVIASAPKEWGSIATFIGAAVFPVGLVLVLIAGGELLTGNMMAVPLARWAGRIKTGAMLRNLAIITLSNFAGALFVAFFFGHVLGLTETGPYLDKVVDMAGHKLHESFLQSFISGIGCNWLVALAVWMAYSTDSIGGKIMGIWFPTMAFVAIGFQHVVANMFLIPAAIFAGHFSWAEYVMNFIPVWLGNLVGGSLFVAGAYWLAYLKKTQTNTHSVNESQITPSVASNPLSDHA
>NC_014622.2|WP_016324832.1|5280804_5282937_-|molybdopterin-oxidoreductase-family-protein
MDHRNSAPLEATLQHNLHRGQRMTEQQNGIFPAVCPLDCPDTCGLLLHKENGKIVKVTGNPDHPITKGAICNKVRNMTERVYDPDRVLYPLKRVGAKGEGKFERISWEEAVDTITGRFKELIRTDGPESILPYSFYGNMGVLSVDGMDRRFFNALGSSQLDQTICSVAGNEGWASVMGFKGGTSPEDTEDAELIIVWGGNVISTNMHQVVLAEKARKKGAKVVVIDVHRNRTAQWADWFIPLYPGTDTALALGVMHVLFDQGLTDDEFLRRYTVGHEELREHVKTYTPERVSQITGVPKEDIIRLAEMYGKARAAYINIGNGLQHHDNGGMNVRAVTCLPALTGQWLKHGGGASRSNGAYAKINSAHLERPDLRQNPDARVINMNRIGEALLQKEQPIKALFVYCSNPVVVAPDSERVTEGFEREDLFTVVHDLFLTDTACYADIVLPAASSFEGTDLYKSYWHHYIQMQKPVIDPLGESKSNYELFSLLGQAMGFDEAAFTESEEDMIAGALDNPTNPYLNGVTLDALKKSPFVKLDMTPKATYLERLTTPSGKIELYSEKMKQAGLPALPSYVPLIEGYDGEHRPQADDRFPLMFVSPPNHNFLNSTFANLPKHQRLEREPLLQIHPEDAQARDIADGDPVTVWNDRGMYELKAKVTDLMLPGTVISQGLWWKGKGRRQRANALTSDRLSDMGQGATFFSTVVNVKRQ
>NC_014622.2|WP_016324831.1|5279528_5280758_-|MFS-transporter
MKWLESYPKEVKVFLIASLINSAGSSLMWPLVSMYVFDELNRSMGDAGIAILVQSLGGIFGQVLGGALYHRIGAKKLIVGSLAMNALGLLSLPFTSGHWVAFVIMMGFIGFFNVVSVPAIQAFVGFRFADRRGELFNIIYVANNIGVALGTGLSGVLADLSYQLSFVMNGVTSAVFAGFFWSYLSRVDREEGEVQLSKSVMKREEIPARLLFRDTRLYLFVGLGSLFLWFGNSIWNTGVSPYIIEQGLPKTMYGLLWTLNGVLIFAAQPIIFWIKRLYAHHASAQMTWAGGFYLAAYIVILGTQNYTGMIFAMVLATLGEMLIAPAVPAFLSDHGGRGAPFYIGLVGGIGAAGRVMGPYIMGKLYDGGGLPPTLWLALGVAVLSILFFILHSWLNRFRHDLDNLDTTPS
>NC_014622.2|WP_013373490.1|5294623_5295241_+|hypothetical-protein
MNKGWMLVVNNLHYNFIMTGSLSEKHTLFAEECFTNLFDCFETFLNISGIRNTRVSVYQSKKAKHAKIRWDKQELLRIVTDNELTPLMLVIEAPSIKSSYNKGTTPEVYILLSNDPMGQSPNNCGMLVSIRQDIYERIDQTIVEDVMMQLSQWIKATKLLHSSRNFYAGSKARAIMDILPFMLEKDTPDMKYVFQSWTPYPLPHT
>NC_014622.2|WP_013373491.1|5295280_5295925_+|immunity-50-family-protein
MQIQVQKAEKKENEYLIHYQAGGALPFVPHDVVLIHGKQYFIGTILKVESEQVLIRINPEYEDQLTGSIGLELAFSPTVSIQGADSIVEKLGYFPPFHYDRITAANMTKDQITLTIELSPASVLVPKSPDLEPSADAPVIPEAPAKDIPRYAVTFTFLETKEHVLTPVETENIILQLDFRYEEADMVVDIDALSGLSGSFLCRGIRAEITELHE
>NC_014622.2|WP_013373492.1|5295917_5296325_+|hypothetical-protein
MNKHEARELLRCHSFIHDDLEHPKMRSGFLGMLRPFQGELIEDNFHELMTIIEVLADELEKPSVERELISALWGICQYTRAWALHPDGMLQRNHLLTVEQISTLDDWIDTISYAVMVLLEGGGTEEALSNYRQRE
>NC_014622.2|WP_013373493.1|5296374_5296881_+|HEAT-repeat-domain-containing-protein
MSIQTDDDGKTFLSIFPTLSYEDRLVSLRELTAIPQPMGDTIAFLLQLVQQSSEDDLLRIEALKVIGLYADQSQQPMIMRGIRELLSKPDEDDDVRNAALQTLAWMPCSEAELHIALDLIRSDTYILVKGAAFALLRAHKAHPFAQHALKQLLQHEEFGASAQRELST
>NC_014622.2|WP_013373494.1|5296910_5297540_+|hypothetical-protein
MRVRIFIFILIIGIICVPAYFIMSSFGLFQNEKVLVHYKLALEVKGKKYDAWPLISSYTAIDKNGDHRQLYYQAEGSGIEYLFQLAYGQYELKPSKENPFLDGGIHYTMDHPEYVREEKQYENANDYTELTHYYNQQEQVIYTYNPEASLDKTYVRSIITAGMTRTTGNSSRPVKDDYINISKLFKDKLGVNVKVDVDEDNKIVTLSMS
>NC_014622.2|WP_013373495.1|5297569_5298130_+|hypothetical-protein
MTETQHTKLGPAYLEDWVVPENPEAWVEQEWTGKLRSQAGNTKFHIFYYGEFMDELIAVTEFAPQLIIAEDAVTGEQIVIFDGTRHGYDALLCEVYTEEQQNNRTPLLPYLDDDGEDTFEVTVTAFYNVDWDDEFADDVDENGQLELISGERCDFEEAKRNGFDAISITITSAKGLKTEILQEELA
>NC_014622.2|WP_013373496.1|5298132_5298567_+|immunity-26/phosphotriesterase-HocA-family-protein
MVFKRIKHQEGDIFVIPLHDGRFAVCQVICALYGRFKKAFSFGVLSIGQNQAYEGEATYLSFTDYRGRFEVIFTATQNLTKGVWPIIDHRLLSEEQQQLKYFNCAGHLYYGDEYVRNLELKEYNQYPVMGVAGYELVQQYLAQA
>NC_014622.2|WP_013373497.1|5298635_5299175_-|hypothetical-protein
MSIFTGLQRLQIQAYYDEEFLIEHRFSNGRGFPPSYIDYVKTLGYGRLCGVWNIHIPLGDHPDSWLHRYHDWRAWFDDVLESEEVLQEAALEPDGFPQLLEHAVPFASSEEDDLLVWDIQSPDKRGEFPIYALNLRTWGNFRYAAPDLYSFVEALLDRERVKSILGTHRTPFPYTFEPF
>NC_014622.2|WP_013373498.1|5299543_5300203_+|hypothetical-protein
MEQKRFKDEYGYKYDFAAVIRRGEQVAVHCPRCQGQAFISRSKEDCYYVVRCSHCYYTFQQPESYKFYARGVCSHCERYFNIEIHDDRTVTHKNTNIHCPHCETRNQVPVHRMQSREWHTDVIQNGKDPIFQLQLYFLDYYRGKPVWALNRIHLNYLLSYISAELREKPTSGMMRTASHSIPKYIKDAKNRQAILKILQKLQHKQASKGEHSKHEYTNF
>NC_014622.2|WP_013373499.1|5300368_5302003_-|hypothetical-protein
MTSGVQAYIDPIFEEIDQRYASEQKRIAEFKTKSVLHEGIHEYLKVTCKSDGLWVDTYEPFDWDHRRPDMDISGFTEEVTLQQVQDEWMPVFKERIAALYNSEEFSPMFFRYRLEFHLEVVLENKASHFTFSLLNEDKRQHLLATIEQFVEQKLDPASKAIPKEEDDFFLVRHLLDPHLYPIDAQWVNELLNRMDAKVQVSRKREEAWRHQLSRGLMHWAEDEFLAKYADREKNYGLEYTVRPDILPSDIPAPAMEMFLLTAMRVGSTDADARQSYLEIAAQLGSNQAAEWLKSGSGSIPASYTSERVTCQANDILQTLEVQIRSEEEESYREALVYLCDILRKGFTKEYGMKFKSKVKNYLPIPKLAKSALHRFFANALEYPSLHPLLAEYAETVMEEFKWYNDVEPGEKSAMPGTYAVMGLGLKGTEYFPLVSRYMKLVDSEHQSVQDGYAAVFAEAHGLTPDTIPVWVRILLAGNDSAKPLKSAGIESAEQAKALVNVLEKLEDYEQEMIVYRIWGGAKKLKNSLKQAVPEVKEILETLIP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

948891 : 960342

Mollivirus(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013369469.1\|948891_950190_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.0e-20	33.1
WP_013369470.1\|950423_950669_+	hypothetical protein	NA	NA	NA	NA
WP_013369472.1\|950789_951671_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	4.4e-42	34.6
WP_007428837.1\|951729_951975_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	1.4e-06	37.7
WP_013369473.1\|951979_952669_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013369474.1\|952646_954890_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-164	42.3
WP_013369475.1\|954874_956356_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-52	32.0
WP_013369478.1\|957012_958053_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.7e-70	45.8
WP_013369479.1\|958052_958667_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-23	37.0
WP_013369480.1\|958797_960342_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.5e-74	52.5

DBSCAN-SWA_2

1297053 : 1317386

Bacillus_phage(41.18%)

plate,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013369767.1\|1297053_1298961_-	5'-nucleotidase C-terminal domain-containing protein	A0A2P1CFA9	Microbacterium_phage	4.0e-08	50.9
WP_013369768.1\|1299156_1299582_-	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	2.6e-16	36.1
WP_013369769.1\|1299593_1300067_-	transcriptional regulator	S6C481	Thermus_phage	3.7e-19	39.7
WP_013369770.1\|1300343_1300832_+	transcriptional regulator	A0A0C5AJ96	Bacteriophage	5.4e-42	62.7
WP_013369771.1\|1300938_1301793_+	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	1.3e-91	55.0
WP_014599528.1\|1302138_1303107_+	hypothetical protein	NA	NA	NA	NA
WP_013369774.1\|1303117_1303336_+	hypothetical protein	NA	NA	NA	NA
WP_013369775.1\|1303338_1304805_+\|tail	phage tail sheath family protein	A0A0N7AEC6	Bacillus_phage	1.4e-72	36.3
WP_013369776.1\|1304926_1305334_+\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	7.2e-40	58.0
WP_007429164.1\|1305433_1305868_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.8e-20	42.0
WP_013369778.1\|1306040_1307921_+	hypothetical protein	NA	NA	NA	NA
WP_013369779.1\|1307937_1308579_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	1.7e-43	51.6
WP_013369780.1\|1308575_1309553_+	hypothetical protein	A0A0N6W8H4	Bacillus_phage	2.5e-78	47.7
WP_013369781.1\|1309545_1309953_+	hypothetical protein	A0A0N7ACD3	Bacillus_phage	1.7e-09	33.1
WP_013369782.1\|1309939_1310410_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	1.5e-25	38.6
WP_013369783.1\|1310409_1311561_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.4e-40	35.2
WP_014599529.1\|1311553_1312228_+	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	3.6e-28	44.5
WP_013369785.1\|1312229_1314785_+	hypothetical protein	R4JDZ8	Bacillus_phage	1.7e-14	30.5
WP_013369786.1\|1314798_1315410_+	hypothetical protein	NA	NA	NA	NA
WP_013369787.1\|1315468_1315735_+	hypothetical protein	NA	NA	NA	NA
WP_013369788.1\|1315821_1316268_+\|holin	phage holin family protein	R9TMD4	Paenibacillus_phage	8.7e-39	62.2
WP_013369790.1\|1316420_1317386_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	8.5e-55	50.2

DBSCAN-SWA_3

1862915 : 1872266

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025676257.1\|1862915_1863785_+	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	4.9e-54	43.0
WP_013370355.1\|1863906_1865709_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.6e-38	36.3
WP_013370356.1\|1865837_1866569_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-37	34.5
WP_013370357.1\|1866726_1867851_+	CBS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.9e-08	26.9
WP_013370358.1\|1867978_1868737_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-14	32.4
WP_013370359.1\|1868776_1869436_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_013370360.1\|1869611_1872266_+	DNA polymerase I	A0A060AM05	Listeria_phage	1.4e-46	29.8

DBSCAN-SWA_4

2950355 : 2958145

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013371351.1\|2950355_2951192_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.5e-18	35.9
WP_013371352.1\|2951184_2952027_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.7e-12	23.2
WP_013371353.1\|2951993_2953304_+	MATE family efflux transporter	NA	NA	NA	NA
WP_013371354.1\|2953424_2954882_-	catalase	A0A2K9L0T1	Tupanvirus	6.5e-115	43.4
WP_013371355.1\|2955168_2955771_-	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_013371356.1\|2955821_2956721_-	TIGR02452 family protein	G3MBH6	Bacillus_virus	5.8e-58	45.3
WP_013371357.1\|2956726_2957209_-	NADAR family protein	A0A0S0N9W6	Pseudomonas_phage	2.8e-43	56.1
WP_013371358.1\|2957239_2958145_-	NUDIX hydrolase	G3MA14	Bacillus_virus	1.4e-35	34.3

DBSCAN-SWA_5

3337607 : 3344793

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013371717.1\|3337607_3338870_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	3.0e-07	32.9
WP_013371719.1\|3339080_3339803_+	hypothetical protein	NA	NA	NA	NA
WP_013371720.1\|3339893_3340385_-	GerW family sporulation protein	NA	NA	NA	NA
WP_013371721.1\|3340484_3341198_-	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_013371722.1\|3341340_3341949_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.1e-15	33.3
WP_040103467.1\|3341917_3342712_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.9e-08	30.5
WP_013371724.1\|3342885_3343350_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.4e-41	59.2
WP_085978642.1\|3343379_3344024_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.9e-59	56.2
WP_013371726.1\|3344127_3344793_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.5e-39	40.9

DBSCAN-SWA_6

3680233 : 3704107

Bacillus_phage(40.0%)

portal,holin,plate,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013371996.1\|3680233_3680731_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	2.9e-19	39.2
WP_148554141.1\|3680966_3681347_-	hypothetical protein	NA	NA	NA	NA
WP_013371998.1\|3681364_3682294_-\|tail	tail fiber protein	NA	NA	NA	NA
WP_013371999.1\|3682308_3682698_-\|tail	phage tail protein	NA	NA	NA	NA
WP_013372000.1\|3682707_3683460_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_013372001.1\|3683456_3684281_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_013372002.1\|3684277_3684598_-	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_013372003.1\|3684669_3685095_-	hypothetical protein	NA	NA	NA	NA
WP_016324534.1\|3685097_3685628_-	hypothetical protein	NA	NA	NA	NA
WP_016324535.1\|3685621_3686074_-	hypothetical protein	NA	NA	NA	NA
WP_013372004.1\|3686080_3686728_-	hypothetical protein	NA	NA	NA	NA
WP_013372005.1\|3686731_3690226_-\|tail	tail tape measure protein	A0A0N7ACN7	Bacillus_phage	1.6e-15	71.9
WP_013372006.1\|3690435_3690864_-	hypothetical protein	NA	NA	NA	NA
WP_013372007.1\|3690928_3691375_-	hypothetical protein	NA	NA	NA	NA
WP_013372008.1\|3691378_3692731_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4J187	uncultured_Caudovirales_phage	8.6e-21	28.6
WP_013372009.1\|3692711_3692972_-	hypothetical protein	NA	NA	NA	NA
WP_013372010.1\|3692968_3693463_-	hypothetical protein	NA	NA	NA	NA
WP_013372011.1\|3693462_3693957_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_016324536.1\|3693943_3694270_-	hypothetical protein	NA	NA	NA	NA
WP_013372013.1\|3694266_3694650_-	DUF3199 family protein	NA	NA	NA	NA
WP_148266417.1\|3694618_3694942_-	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_013372015.1\|3694980_3695913_-\|capsid	P2 family phage major capsid protein	H7BVA6	unidentified_phage	4.1e-30	30.0
WP_013372016.1\|3695937_3697197_-\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	4.9e-71	45.6
WP_013372017.1\|3697225_3698056_-	hypothetical protein	I6R1H0	Marinomonas_phage	7.4e-15	46.3
WP_013372018.1\|3698048_3699545_-\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	3.8e-54	32.1
WP_013372019.1\|3699548_3701234_-	hypothetical protein	M4MCI5	Vibrio_phage	8.2e-37	29.0
WP_013372020.1\|3701227_3702112_-	alkaline phosphatase	D2J000	Enterococcus_phage	9.2e-24	36.8
WP_013372021.1\|3702239_3703082_-	hypothetical protein	NA	NA	NA	NA
WP_013372023.1\|3703242_3703743_-	hypothetical protein	NA	NA	NA	NA
WP_013372024.1\|3703888_3704107_-	hypothetical protein	A0A1B1P7D4	Bacillus_phage	4.7e-06	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

134235 : 147236

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013386111.1\|134235_134670_-	hypothetical protein	G3MBB2	Bacillus_virus	4.2e-30	49.0
WP_013386110.1\|135232_135712_-	helix-turn-helix transcriptional regulator	A0A2H4JAY7	uncultured_Caudovirales_phage	1.6e-06	34.1
WP_043886199.1\|135877_136168_+	hypothetical protein	NA	NA	NA	NA
WP_013386107.1\|136229_136418_-	hypothetical protein	NA	NA	NA	NA
WP_013386106.1\|136471_136894_-	hypothetical protein	NA	NA	NA	NA
WP_013386105.1\|137300_138539_-	DNA polymerase IV	O64031	Bacillus_phage	3.6e-66	38.0
WP_013386104.1\|138761_138983_-	hypothetical protein	NA	NA	NA	NA
WP_187298948.1\|139019_139346_-	type I-C CRISPR-associated protein Cas8c/Csd1	A0A142F1N8	Bacillus_phage	2.6e-08	37.6
WP_013386101.1\|139522_140509_-	hypothetical protein	A0A1S6UAF7	Serratia_phage	1.2e-40	46.6
WP_013386099.1\|141033_141261_-	hypothetical protein	NA	NA	NA	NA
WP_013386098.1\|141461_141893_-	hypothetical protein	A0A0K2FMD7	Brevibacillus_phage	4.5e-40	54.5
WP_013386096.1\|142501_142693_-	hypothetical protein	NA	NA	NA	NA
WP_043886198.1\|142891_143428_-	hypothetical protein	NA	NA	NA	NA
WP_080943527.1\|143336_143552_-	DUF3797 domain-containing protein	A0A0H3UYX0	Geobacillus_virus	8.0e-06	46.8
WP_013386092.1\|145237_145600_-	hypothetical protein	A0A0A7AR03	Bacillus_phage	2.2e-24	47.1
WP_043886197.1\|145792_145975_-	hypothetical protein	U5J9T6	Bacillus_phage	2.2e-20	78.6
WP_013386090.1\|146062_146521_-	hypothetical protein	NA	NA	NA	NA
WP_043886195.1\|146534_147236_-	metallophosphoesterase	A0A060AL72	Listeria_phage	3.7e-36	38.0

DBSCAN-SWA_2

308941 : 319693

Vibrio_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013385904.1\|308941_309637_+	methyltransferase domain-containing protein	A0A0N9SHZ9	Staphylococcus_phage	6.6e-33	36.6
WP_048481122.1\|310611_311040_+	DNA cytosine methyltransferase	A0A2I7RCS2	Vibrio_phage	3.1e-17	40.9
WP_013385902.1\|311121_312240_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3UZC2	Geobacillus_virus	3.9e-120	58.2
WP_051507726.1\|312370_313222_+	DNA cytosine methyltransferase	A0A2I7RCS2	Vibrio_phage	6.8e-40	36.7
WP_043886159.1\|313385_315743_+	ribonucleoside-diphosphate reductase subunit alpha	A0A0Y0AS84	Bacillus_phage	4.1e-244	57.2
WP_013385899.1\|315815_316844_+	ribonucleotide-diphosphate reductase subunit beta	A0A127AVZ3	Bacillus_phage	1.8e-87	47.0
WP_013385898.1\|317245_317764_+	hypothetical protein	NA	NA	NA	NA
WP_148554266.1\|317875_318256_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013385896.1\|318706_319693_+	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	1.5e-06	28.3

DBSCAN-SWA_3

421720 : 428050

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013386417.1\|421720_422491_+\|tRNA	tRNA(His) guanylyltransferase Thg1 family protein	A0A0S2MUM2	Bacillus_phage	1.5e-99	70.8
WP_080943531.1\|422483_422621_+	hypothetical protein	G3M9Z9	Bacillus_virus	3.3e-05	50.0
WP_013386415.1\|423150_423594_+	hypothetical protein	NA	NA	NA	NA
WP_013386414.1\|423657_424701_+	5'-3' exonuclease	A0A0N7ACJ6	Bacillus_phage	3.9e-37	35.0
WP_013386413.1\|424718_425567_+	hypothetical protein	NA	NA	NA	NA
WP_013386412.1\|425580_425946_+	hypothetical protein	A0A249XZS8	Enterococcus_phage	1.4e-18	42.7
WP_043886255.1\|425964_426177_+	hypothetical protein	NA	NA	NA	NA
WP_013386411.1\|426176_427151_+	hypothetical protein	NA	NA	NA	NA
WP_013386410.1\|427147_427678_+	DUF262 domain-containing protein	A0A0U4IQH3	Vibrio_phage	1.2e-05	33.3
WP_043886254.1\|427681_428050_+	ASCH domain-containing protein	A0A2I7QYU6	Vibrio_phage	1.1e-18	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014622

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection