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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017455 Halanaerobium praevalens DSM 2228, complete sequence 2 crisprs c2c10_CAS-V-U3,RT,cas3HD,cas3,DEDDh,DinG,csa3,WYL 0 3 7 0

Results visualization

1. NC_017455
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017455_1 2184414-2184498 TypeV-U3 NA
1 spacers
c2c10_CAS-V-U3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017455_2 2221921-2222245 Orphan I-B
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_KP125893 Klebsiella pneumoniae subsp. pneumoniae strain HS08204 plasmid pHS08204, complete sequence 15900-15933 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP042506 Leclercia adecarboxylata strain E1 plasmid pE1_001, complete sequence 187246-187279 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP043854 Enterobacter hormaechei strain EB_P6_L3_02.19 plasmid unnamed1, complete sequence 16747-16780 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP042494 Leclercia adecarboxylata strain E61 plasmid pE61_001, complete sequence 187246-187279 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP043767 Enterobacter hormaechei strain EB_P9_L5_03.19 plasmid pIMPIncH12_331kb, complete sequence 82585-82618 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP042525 Citrobacter freundii strain E11 plasmid pE11_001, complete sequence 187246-187279 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP042502 Enterobacter sp. E76 plasmid pE76_003, complete sequence 50797-50830 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP042536 Citrobacter freundii strain E51 plasmid pE51_002, complete sequence 115926-115959 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP040892 Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_4, complete sequence 10130-10163 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP044215 Klebsiella aerogenes strain KA_P10_L5_03.19 plasmid pIMPIncH12_334kb, complete sequence 243608-243641 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP023489 Klebsiella pneumoniae subsp. pneumoniae strain ST101:960186733 plasmid p19-10_02, complete sequence 91979-92012 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP026716 Klebsiella oxytoca strain AR_0028 plasmid unitig_1_pilon, complete sequence 170513-170546 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_MG252895 Escherichia coli strain Esco-36073cz plasmid pEsco-36073cz, complete sequence 197446-197479 8 0.765
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 NZ_CP026371 Klebsiella quasipneumoniae strain A708 plasmid pA708-3, complete sequence 293-326 8 0.765
NC_017455_2 2.1|2221958|36|NC_017455|PILER-CR,CRT 2221958-2221993 36 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 815440-815475 10 0.722
NC_017455_2 2.1|2221958|36|NC_017455|PILER-CR,CRT 2221958-2221993 36 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 270063-270098 10 0.722
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 MT074141 Bacteroides phage DAC22, complete genome 18214-18247 10 0.706
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 MT074139 Bacteroides phage DAC19, complete genome 18197-18230 10 0.706
NC_017455_2 2.2|2222031|34|NC_017455|PILER-CR,CRT 2222031-2222064 34 MT074140 Bacteroides phage DAC20, complete genome 18197-18230 10 0.706
NC_017455_2 2.5|2221957|37|NC_017455|CRISPRCasFinder 2221957-2221993 37 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 270062-270098 11 0.703
NC_017455_2 2.5|2221957|37|NC_017455|CRISPRCasFinder 2221957-2221993 37 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 815440-815476 11 0.703

1. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_KP125893 (Klebsiella pneumoniae subsp. pneumoniae strain HS08204 plasmid pHS08204, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

2. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP042506 (Leclercia adecarboxylata strain E1 plasmid pE1_001, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

3. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP043854 (Enterobacter hormaechei strain EB_P6_L3_02.19 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

4. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP042494 (Leclercia adecarboxylata strain E61 plasmid pE61_001, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

5. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP043767 (Enterobacter hormaechei strain EB_P9_L5_03.19 plasmid pIMPIncH12_331kb, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

6. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP042525 (Citrobacter freundii strain E11 plasmid pE11_001, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

7. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP042502 (Enterobacter sp. E76 plasmid pE76_003, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

8. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

9. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP040892 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_4, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

10. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP044215 (Klebsiella aerogenes strain KA_P10_L5_03.19 plasmid pIMPIncH12_334kb, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

11. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP023489 (Klebsiella pneumoniae subsp. pneumoniae strain ST101:960186733 plasmid p19-10_02, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

12. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP026716 (Klebsiella oxytoca strain AR_0028 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

13. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_MG252895 (Escherichia coli strain Esco-36073cz plasmid pEsco-36073cz, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

14. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to NZ_CP026371 (Klebsiella quasipneumoniae strain A708 plasmid pA708-3, complete sequence) position: , mismatch: 8, identity: 0.765

acattaagatttttaggcaaaatattatggttaa---	CRISPR spacer
gaaataatatttttaggcacaatatta---ttaaatg	Protospacer
. * *** *********** *******   ****   

15. spacer 2.1|2221958|36|NC_017455|PILER-CR,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 10, identity: 0.722

cttgcgtagctttctgcggtttatcattctcgcttt	CRISPR spacer
gcgacaaaactttccgcggtttatcattctcccttc	Protospacer
 . .*. *.*****.**************** ***.

16. spacer 2.1|2221958|36|NC_017455|PILER-CR,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 10, identity: 0.722

cttgcgtagctttctgcggtttatcattctcgcttt	CRISPR spacer
gcgacaaaactttccgcggtttatcattctcccttc	Protospacer
 . .*. *.*****.**************** ***.

17. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 10, identity: 0.706

acattaagatttttaggcaaaatattatggttaa	CRISPR spacer
attttaaaatttttaggcaaaacattagaaggat	Protospacer
*. ****.**************.**** ..  * 

18. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 10, identity: 0.706

acattaagatttttaggcaaaatattatggttaa	CRISPR spacer
attttaaaatttttaggcaaaacattagaaggat	Protospacer
*. ****.**************.**** ..  * 

19. spacer 2.2|2222031|34|NC_017455|PILER-CR,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 10, identity: 0.706

acattaagatttttaggcaaaatattatggttaa	CRISPR spacer
attttaaaatttttaggcaaaacattagaaggat	Protospacer
*. ****.**************.**** ..  * 

20. spacer 2.5|2221957|37|NC_017455|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 11, identity: 0.703

ccttgcgtagctttctgcggtttatcattctcgcttt	CRISPR spacer
ggcgacaaaactttccgcggtttatcattctcccttc	Protospacer
  . .*. *.*****.**************** ***.

21. spacer 2.5|2221957|37|NC_017455|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 11, identity: 0.703

ccttgcgtagctttctgcggtttatcattctcgcttt	CRISPR spacer
ggcgacaaaactttccgcggtttatcattctcccttc	Protospacer
  . .*. *.*****.**************** ***.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 180204 : 187603 7 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 758017 : 767739 8 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_3 1003701 : 1012104 9 uncultured_Mediterranean_phage(33.33%) tRNA,protease NA
DBSCAN-SWA_4 1262170 : 1300496 37 Acinetobacter_phage(33.33%) transposase,tail NA
DBSCAN-SWA_5 1393680 : 1403458 6 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_6 1621268 : 1632327 7 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_7 2200811 : 2210510 10 Streptococcus_phage(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage