CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017451	Haemophilus influenzae R2866, complete genome	4 crisprs	DinG,cas14j,DEDDh,cas3,WYL	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017451_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017451_1

602240-602411

Orphan

Consensus_repeat	Method
ACAGTGGTTAATTTTTGTTCACTGTGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017451_1

>merge|NC_017451|1|602240-602411|CRISPRCasFinder
ACAGTGGTTAATTTTTGTTCACTGTGCAACCCTAGCACAGTGGTTAATTTTTGTTCACTGTGCAACCCTAGCACAGTGGTTAATTTTTGTTCACTGTGCAGTCCCCGCACACTGGTTAAAATTTGTACTTTGTAAAGTCCCTTTACAGTAGTTAAATTTTGTACTTTGTAGA

>NC_017451|1|1|602240-602411|CRISPRCasFinder
ACAGTGGTTAATTTTTGTTCACTGTGCA	ACCCTAGCACAGTGGTTAATTTTTGTTCACTGTGCAACCCTAGC
ACAGTGGTTAATTTTTGTTCACTGTGCA	GTCCCCGCACACTGGTTAAAATTTGTACTTTGTAAAGTCCCTTT
ACAGTAGTTAAATTTTGTACTTTGTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017451.1\|WP_011271832.1\|595507_595936_-\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NC_017451.1\|WP_005667775.1\|601430_602186_-\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NC_017451.1\|WP_005649714.1\|609970_610966_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NC_017451.1\|WP_011271833.1\|594751_595393_-\|DUF3560-domain-containing-protein	unknown	unknown	gnl\|CDD\|371890
NC_017451.1\|WP_011271826.1\|606063_607419_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_017451.1\|WP_005649716.1\|611364_611733_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239427
NC_017451.1\|WP_011271834.1\|594309_594717_-\|hypothetical-protein	unknown	unknown	unknown
NC_017451.1\|WP_011271828.1\|602446_603670_-\|hypothetical-protein	unknown	unknown	unknown
NC_017451.1\|WP_005687559.1\|599729_600248_-\|lipoprotein	unknown	unknown	gnl\|CDD\|369706
NC_017451.1\|WP_020910034.1\|608812_609958_+\|methionine-biosynthesis-PLP-dependent-protein	unknown	unknown	gnl\|CDD\|181320
NC_017451.1\|WP_011271827.1\|604370_606071_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NC_017451.1\|WP_005687556.1\|600274_600697_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NC_017451.1\|WP_005653583.1\|600942_601416_-\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NC_017451.1\|WP_011271835.1\|593738_594209_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_017451.1\|WP_011271830.1\|598956_599514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319248
NC_017451.1\|WP_005649718.1\|611743_612001_-\|hypothetical-protein	unknown	unknown	unknown
NC_017451.1\|WP_005627940.1\|611085_611409_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_017451.1\|WP_011271825.1\|607420_608257_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_017451.1\|WP_014326561.1\|596820_598866_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NC_017451.1\|WP_005653590.1\|603819_604371_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591

Protein	Function_ID	Function_description	E-value
NC_017451.1\|WP_011271832.1\|595507_595936_-\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	2.69038e-68
NC_017451.1\|WP_005627940.1\|611085_611409_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	4.89092e-56
NC_017451.1\|WP_005649714.1\|609970_610966_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NC_017451.1\|WP_011271833.1\|594751_595393_-\|DUF3560-domain-containing-protein	gnl\|CDD\|371890	pfam12083, DUF3560, Domain of unknown function (DUF3560). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.	7.665e-40
NC_017451.1\|WP_011271826.1\|606063_607419_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	7.23791e-168
NC_017451.1\|WP_005649716.1\|611364_611733_-\|hypothetical-protein	gnl\|CDD\|239427	cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from both barrels contribute to the binding of the folate substrate.	4.43696e-16
NC_017451.1\|WP_005667775.1\|601430_602186_-\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	2.76064e-112
NC_017451.1\|WP_005687559.1\|599729_600248_-\|lipoprotein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	2.63163e-05
NC_017451.1\|WP_020910034.1\|608812_609958_+\|methionine-biosynthesis-PLP-dependent-protein	gnl\|CDD\|181320	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein.	0
NC_017451.1\|WP_011271827.1\|604370_606071_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	7.97516e-149
NC_017451.1\|WP_005653590.1\|603819_604371_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.90554e-68
NC_017451.1\|WP_005653583.1\|600942_601416_-\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	3.06214e-32
NC_017451.1\|WP_011271835.1\|593738_594209_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	4.49568e-53
NC_017451.1\|WP_011271830.1\|598956_599514_+\|hypothetical-protein	gnl\|CDD\|319248	cd16389, FIN, fertility inhibition factors, including OSA and FiwA, related to the ParB/Srx superfamily. Osa and FiwA are fertility inhibition factors (FIN), which are employed by plasmids to block import of rival plasmids. Osa (oncogenic suppressive activity) of IncW group plasmid pSa gene inhibits the oncogenic properties of Agrobacterium tumefaciens. Osa is structurally similar to the ParB N-terminal domain/Srx superfamily of proteins: ParB acts in the bacterial and plasmid parABS partitioning systems. Osa has been shown to have ATPase and DNAse activities, an can block T-DNA transfer into plants. FiwA is encoded by plasmid RP1 and blocks the transfer of plasmid R388. The gene product of Haemophilus influenzae p1056.10c also blocks T-DNA transfer.	2.29146e-60
NC_017451.1\|WP_005687556.1\|600274_600697_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	1.70011e-88
NC_017451.1\|WP_011271825.1\|607420_608257_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.56995e-30
NC_017451.1\|WP_014326561.1\|596820_598866_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0

>NC_017451.1|WP_005667775.1|601430_602186_-|TIGR03761-family-integrating-conjugative-element-protein
MTTTYNQQLGPLRSEITFTLHTQYATRLWNGRDLVKNEAGEVVTSSILSIPNALSLLSQIQQAAEQDDPYADDYLLRFEQKVLGFRKEMQDMTWRMVNLYSEKIPENFQIERCANIAPIQYPIFVNTQLGYQLLYLLADFDSLARTVMTASHIALLTKDDAYDWLESGAKLIRRAFGVLENYRNSGITRQDALENNARYQAAVKRMKYTLTPDVLSGTTRATFAPTIKKSSLAESDDNGSVEVQITANKTE
>NC_017451.1|WP_005653583.1|600942_601416_-|DUF3158-family-protein
MDNVLIPSDMYKQLGRTTPLNDSLKQLFSELDSVQQYELLAESLATVREALMLQQNEMLQNVRKSELSVLPIHMIRDKASSSGGTFLRWRSFQASKTGDAVLNPVFNNPQLSSDLRQKLVSAEKERILINLQVSVLNFMMRQVSSAVDKIKEIEDHL
>NC_017451.1|WP_005687556.1|600274_600697_-|single-stranded-DNA-binding-protein
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREVTEWHRIVFYRKLAEICGQYLKKGAQVYIEGRLRTRKWQDQNGQDRYTTEIQGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
>NC_017451.1|WP_005687559.1|599729_600248_-|lipoprotein
MKKIIFVLSAVAALSGCAELNSLNDAVGNVAGQLSSVLGGGNSSSSSSGVAYTQSSRSHRYNVEDSITSSKNIDSLYVKIKRNLKFKTREEALSGLSGYERQRYESLLDEEGHAHEATPGVYYHMANSYVGGRKIDITLAKEDGKVRISWIASSNESDFAQFVKSEVIKAIK
>NC_017451.1|WP_011271830.1|598956_599514_+|hypothetical-protein
MIKLTPSSIGVMVDTLRYSGRDRYIIFRMKTREQKVVYMRYPQHIENMANQENMIVIVDAQKFLSLWQRSPYEVDKNTCAGDESTWRKDYKFHHAENGFAKSMDSPVPLADVNVHIKDGEISCSLNDGMTRTLWLLANGVKEFPILVRNHKEKAKILSKYASPLSSLHFEPLNLFFAITGEKYPL
>NC_017451.1|WP_014326561.1|596820_598866_-|DNA-topoisomerase-III
MKLFLCEKPSQGNDIAKVLGATKRGEGCLSTPDGQLTVTWGIGHLVEQFNPEEYDPAFKKWAFETLPIIPGKWGLSPKKETKKQFNVVMKLIKQAKLVVIATDIDREGETIARELLDLAGFRGQIKRLWLSALDDTSIRKALGALKNNEETLPLYYAGLARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVNRDREIKNFIPKQHFALQVMLSDGNQHFATQYVIPEQYCDPDGLCLSAQVIQAANQQIRQFGQAKVESVETKRERQNAPLCFALSDLQSEANRLYGLGAQRVLDIAQSLYETHKATTYPRTDCGYLPESQFAEAPQIIQCLLQSDNRLHPLAGMLNLNQKSRVWNDKKITAHHGIIPTMIKADISKMSDEELKLYDLIRRRYLAQFLPVSETDKTQIILKCGQHILSARGNVLIAPGWKILFGKSLDEDDDAPQALPTLKQGQICQISDSEIKTLQTSPPNHFTEGTLLTAMKNAARFVTDERLKQRLRETEGLGTEATRAGTIQGLIDKGFLKKKGKSLLATDEAMTLIDNLPQMLKDPGLTALWEQALNQIAERTLSLEVFMQKQEVFVRHLMADCLKKGMSLGNIEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKNTKSTKNLKKKSSKSVSEQISSLRSLLN
>NC_017451.1|WP_011271832.1|595507_595936_-|DUF3577-domain-containing-protein
MSTQNAQPKYFNLHTSGIGYLSDIREIKPKKGDAFWACRIAALTGSSDSPEYRFFDMNVSGEETVNLIKRCQEAVEAKKKVLVSFVMSDLWYDTFTYSKDSEYHKKGDTGVSIKGRLYRINFIKVDGELKYQAKRQDEQGND
>NC_017451.1|WP_011271833.1|594751_595393_-|DUF3560-domain-containing-protein
MNTYAKFCPNVFVAKCPDAHQKGDVIILTSKYGKETEVEIHNLVKTSEDAYFYSFTRCDGVNSQVRAEQKAERYQNAANNALKRSEQYCEAANEGREFLSLGEPIKIGHHSEKRHRALIERNARRMDKSIEEMRKAESYDGKIAYWEQMAGKIDLSMPESLEFFKFELEKAKEKHQELKDKPELRTHAFSLTYAKKAVNELEKKVKLAELLWA
>NC_017451.1|WP_011271834.1|594309_594717_-|hypothetical-protein
MFYYVNSGLELITLTTQEFISEFLGKATTPKGIEPNHFYDPQTKLVYAWYSGKCVATSEYQYTPQEAEALLVELALENASNNGDGSIMFQPSPTKEALIADMSNYLEYCIDDESEHDLEFAAKIKQIIDSLKTSD
>NC_017451.1|WP_011271835.1|593738_594209_-|DNA-repair-protein-RadC
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTEPSIAKLYFQTIIGNEERENFVVLFLDRIHRLIKSEVMFQGSVSETSVSIREIIRQALKLNASAIIIGHNHPTGNVEPSDADKYITKRLKEACELMDIKLLDHFIVSGSASFCFTDNHLI
>NC_017451.1|WP_011271828.1|602446_603670_-|hypothetical-protein
METKLQEHGLLFFGNQHETVPTRLLFDPYLTSRAKLAWQLIKYKAREFQSGMFPSYEVLAKLLSDKPYDEAELSRKLVSQTLLLLRLTRWLTLCETVRNEQGQVLGNFYILHDEPMPIIDTIQLNHDYIALLEKSIQHRDNFVRGVANHIVENLLSDNTQWHYISHIDWMRARLQDYQKRPKMDISEQEESTFIQENLLSSNKELSEKTGELSKNHLSSKMELSKIKQSSKKELSTQNDDKSLISGLVPKGNSGFSQYSTGTSIYINTYCTGNADEIDWPTNIQFSSLEKTAIMQAMRGLDLGICKAILFELEQRVAKGEVKKPQGYVVTLIQRAHRGEFKPYLYEQFLATQAQSLSSKNRLSQHDETSLVNNVKADSTIKPMRVQSEEERKARADRIRQFKASICN
>NC_017451.1|WP_005653590.1|603819_604371_-|DUF2857-domain-containing-protein
MSMFSNLNQVVLNEILVNLQEGNINVCRNYGFSKQELQEIEKLSTEEVYELANTKAPFAKVEINHDAFWRLVARVRMSSQERRLIDRALMLGASIQMLNSYFGLTTSKVSARRSLLGKQEPMGRKPAATEEEEKLIWDLWQEHKGDVQTIESTEGLELLILIAEETGINLTEIWKLVSRWNAA
>NC_017451.1|WP_011271827.1|604370_606071_-|chromosome-partitioning-protein-ParB
MNNPFIAKNKKQQSQLDAIAKGLNVQPINNQSAAYQTTTATHYPAQSKYITVTLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITQRPGEPFYIIADGGNTRIQALKELFTETQDQRFWSIECLYKPWKGESADSVEAELDLLIGHLIENDTRADLTFIEKALGIQQAKEYYEKKLGKSLSARELSSELEKDGYIIQFSMIAKMGRCIEYLYPYIPDVLFNGLGNAPIDKLLAIRNNALAIWQNYQFELEVSFDEIWGHSLARCNDDQPFHIKVFQDHLIDEMSSMLGDRVSYEVLYLEIDLDEQKFKKMAQKQHEIQQSVQESIQDVQAFNTPQPQETALDTLSQPSVVNTPKMTTPEKKSIPAPVLKQASVEISPSFENEADDKTEDEEFDETNASSDGLSFDFAKNLTQQFGITPGMSIQEQRQQRAEENGLGFACVGRQPVDDIWKIYPGRQHKVEAYSLALDIAESVGLTDYIEHVVKEPVDYTYRVKPLDKDVSGVAQMCYDFLNLLQTDVHPQTSFTLLPEYLLNTQEIDDTTLVKLFRLIRLVRYIRSEGDA
>NC_017451.1|WP_011271826.1|606063_607419_-|replicative-DNA-helicase
MTDKLIASIEAESAVIGALIIDNDKFDEIATLLRSDDFYVSAHKVLFEGVSHLLTQGKPADILTLEQYFKDKKLIDQIGGLAYLADIIHNTPSASNITAYAEIISRYSKQRRFLTLGQFIVTEMQSSKDEIELTSFEESVDKQYTNIVIEQETDGVADLNASFERILSRMETSSINADPVSGTPTGIIELDRATTGGQPGELIIIAARPAMGKTTFAQTIAASTLDKFPDSPIQFYSQEMPADQLLERFMAMRSRVSLQSIRQATELEEEEWTRLANAMGTIKKDWKDRLLIDDEASLTPHRLRAKVRKNTRLYGKPKAIFIDYIQLMRTGNKTENRNLELAEISNDLKKLAKETGCPIYALSQLNRGLENRANKRPINADLRDSGSLEQDADVIIHLYRDEIYNPDTEDKGIAEIIIGKQRNGPLATVKTLFQGQYSIFENLTTQDRYYE
>NC_017451.1|WP_011271825.1|607420_608257_-|ParA-family-protein
MDFSSVSKKPYIITVACTKGGSAKSTNAANIGAFCADHGLRTLLIDTDTQPTLSSYYALTEEAPGGIYEFLTRRDIEPSHIISKTSIPNLDLIQSNDPSNNVSQTLRNAPDGAIRFSHLIKNIDNYDVIVVDTRGTRDITVDMSVLAADILFCPILPHILSAKEFIRGTIGMYQDLETFESFGFKLPPLKAIANCVDNTNDVKFVLNQLHVLFETNFDESKTFLDFSIPAHVAYREAATYSLPVYRHSQAEYPVIKELCCLLLPQFKTLFDKPMKKEG
>NC_017451.1|WP_020910034.1|608812_609958_+|methionine-biosynthesis-PLP-dependent-protein
MRSIFSLFLEDVMTQQYAIDTLLAQAGNRSDERTGAVSAPIFLSTAYGHCGIGESTGFDYTRTKNPTRTVLEETIAKLENGDRGFAFSSGMAAIQVLMTLFTAPDEWIVSSDVYGGTYRLLDFSYKNNNSVKPVYVNTAFASEIEAAINPNTKAIFIETPSNPLMEECDVVEIAKLAKKHNLMLIVDNTFLTPVLSRPLDLGADVVIHSGTKYIAGHNDALVGLIVAKGQELCDRIAYIQNGAGAVLSPFDSWLTIRGMKTLSLRMKRHQENAQAIAEFLKDQPQVESVLYPNKGGMLSFRLQDEAWVNTFLKSIKLITFAESLGGTESFITYPATQTHMDIPESERVARGITNTLLRFSVGIEDVEDIKADLLQAFANLK
>NC_017451.1|WP_005649714.1|609970_610966_+|2-hydroxyacid-dehydrogenase
MKIAIYSTKNYDRKYIELINAKYNFDLEFFDFMLNESTVRLAEHCEVVCIFVNDNGSRKVLEKLAALGVKIVALRCAGFNNVDLKAAQELGIQVVRVPAYSPEAVAEHTIGLMMTLNRRIHRAYQRTREANFSLEGLIGFNMYGRTVGVIGTGKIGIAVMRILKGFGMNILAYDPFKNPVVEELGGQYVELDELYAKSHVITLHCPATPENYHLLNREAFAKMKDGVMIVNTSRGSLIDTQAAIDALKQRKIGALGMDVYENERDLFFEDKSNEVIQDDIFRRLSSCHNVLLTGHQAFLTEEALTNIADVTLSNVYKLKSGKVCENIVLPS
>NC_017451.1|WP_005627940.1|611085_611409_+|thioredoxin
MSEVLHINDADFESVVVNSDIPVLLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGALPKTQLANFINQHI
>NC_017451.1|WP_005649716.1|611364_611733_-|hypothetical-protein
MRGPYTSLVDLFESALPDILMLEFSTPRAGELSSLLASEILRQKCILGLGVINPRSDEVETVAQIVQRAEKALNYLPPEQISKFQTKNCPIKGQSYQCAKVTYSFKQRLNMLVNEVSQLSFW
>NC_017451.1|WP_005649718.1|611743_612001_-|hypothetical-protein
MVTSGNYASYYLALLPSENGETIDNWVLPLGTQGLTFEADSWNGLGMRSNVSCFMRMTDMPLDRSWRVAWNSPLITCMPWQLEQR

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Crispr_ID: NC_017451_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017451_2

741215-741363

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_017451_2

>merge|NC_017451|2|741215-741363|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>NC_017451|2|2|741215-741363|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017451.1\|WP_005654343.1\|745426_745927_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
NC_017451.1\|WP_005649956.1\|735969_736314_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NC_017451.1\|WP_005667109.1\|729463_730657_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826
NC_017451.1\|WP_005649974.1\|746865_747531_+\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
NC_017451.1\|WP_005649962.1\|740015_741083_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433
NC_017451.1\|WP_005649971.1\|746109_746322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224399
NC_017451.1\|WP_005649949.1\|732217_733090_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NC_017451.1\|WP_005667113.1\|735614_735968_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|225654
NC_017451.1\|WP_005649958.1\|736449_737256_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NC_017451.1\|WP_005649975.1\|747527_748883_+\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
NC_017451.1\|WP_005667115.1\|737349_739941_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	unknown	unknown	gnl\|CDD\|234980
NC_017451.1\|WP_005649964.1\|742103_743144_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NC_017451.1\|WP_005649967.1\|743639_745367_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NC_017451.1\|WP_005649973.1\|746436_746802_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|129260
NC_017451.1\|WP_005667111.1\|733262_735608_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NC_017451.1\|WP_005649963.1\|741484_742033_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NC_017451.1\|WP_005667119.1\|749159_751187_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
NC_017451.1\|WP_005649965.1\|743302_743560_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|182777
NC_017451.1\|WP_005649947.1\|730727_732062_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NC_017451.1\|WP_005667107.1\|728682_729420_+\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|212111

Protein	Function_ID	Function_description	E-value
NC_017451.1\|WP_005654343.1\|745426_745927_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.54255e-101
NC_017451.1\|WP_005649956.1\|735969_736314_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	2.97219e-82
NC_017451.1\|WP_005667109.1\|729463_730657_+\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	6.14419e-86
NC_017451.1\|WP_005649974.1\|746865_747531_+\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
NC_017451.1\|WP_005649962.1\|740015_741083_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_017451.1\|WP_005649971.1\|746109_746322_+\|hypothetical-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
NC_017451.1\|WP_005649949.1\|732217_733090_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NC_017451.1\|WP_005667113.1\|735614_735968_-\|YacL-family-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	2.25161e-60
NC_017451.1\|WP_005649958.1\|736449_737256_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.6579e-160
NC_017451.1\|WP_005649975.1\|747527_748883_+\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.78953e-177
NC_017451.1\|WP_005667115.1\|737349_739941_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NC_017451.1\|WP_005649964.1\|742103_743144_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NC_017451.1\|WP_005649967.1\|743639_745367_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NC_017451.1\|WP_005649973.1\|746436_746802_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	3.4492e-56
NC_017451.1\|WP_005667111.1\|733262_735608_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_017451.1\|WP_005649963.1\|741484_742033_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.84683e-134
NC_017451.1\|WP_005667119.1\|749159_751187_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
NC_017451.1\|WP_005649965.1\|743302_743560_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	9.41059e-36
NC_017451.1\|WP_005649947.1\|730727_732062_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NC_017451.1\|WP_005667107.1\|728682_729420_+\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	1.8301e-150

>NC_017451.1|WP_005649962.1|740015_741083_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFISAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>NC_017451.1|WP_005667115.1|737349_739941_+|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD
MLFSPTLSSPLTPSAVKIERENFKQFELENFSCYSIFELIENRCDFYDALLIQLWQEIGLSEQQGISLIAVGGYGRREMFPLSDLDFLILVEQTPSPEIEEKITQFIQFLWDCGFEVGNSFRTLAQCESEGKQDITIATNLLEARFLAGNRPHFDALNELVKRADFWSKEDFFNAKVQEQIERYQRYHNTAYNLEPDIKFSPGGLRDLHLLYWVALRHSGALTLEAILQSGFIYPQEYQQLQESRAFLFKVRFALHLILKRYDNRLLFDRQIKVSELLGFRGEGNPAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQTTVIDQLDDDFQLINQCLCLRNSSVFQEKPARILDLFFYLTQYEHANIHSDTLRQLQISLDQLSQKLCEIPAAREKFLRLFNQPNAIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESEEEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAEDVADFAQLHGLDRREIDTLAWLVKSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFSQGMKELLDYSEKSAENRKLAQQILTQDYSDITSISIEKLWTRCPEDYFVRNTPKQIAWHTSLLVDFVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGTKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTVALQSEKLPALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKPGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>NC_017451.1|WP_005649958.1|736449_737256_+|type-I-methionyl-aminopeptidase
MAIPIRTEKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPDIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMVNV
>NC_017451.1|WP_005649956.1|735969_736314_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>NC_017451.1|WP_005667113.1|735614_735968_-|YacL-family-protein
MDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNSDKILTALSTAKSLIENQEKVLIGAEYTLFLNADEVMVRANNLAIETDEILEDDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>NC_017451.1|WP_005667111.1|733262_735608_-|penicillin-binding-protein-1B
MTSQHSAKKSSKNTSKNNRTFKGFLLKFSFTALVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRVLRLRFNNNKLSRIEDLVTVKTVDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLRLMLEHKMIGDELYQLLSQRPLGVQKKGQILRKYPAFIQTLQADLRRELGEHKISSLLGARIFSTMDLKQQAQAENAVGNTVSQLQLKMKNPHLEGAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTPINNQPITINVKGSPPWQPRNYDKKYSDSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTLANQGGRIALTTVDSIADRQGNLIFQHDKSAKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNESRDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPTTVKWVGINQYGDWDCESYRTIPIWLNNGQNFCGETSSPSLTPTTETEAPPQESLWDVLDNPNPPAQ
>NC_017451.1|WP_005649949.1|732217_733090_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQLPILSLKKIYSGKVRDLYEIDDKRMLMVTSDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIRDRAVVCKRLNPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPEGLVEASKLPEAIFTPSSKEEVGNHDINISYAECEKLIGADLAAQVKEKAIALYTVAAEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVDTYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPENIIQKTVDKYQEALDLLTK
>NC_017451.1|WP_005649947.1|730727_732062_-|argininosuccinate-synthase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPIDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>NC_017451.1|WP_005667109.1|729463_730657_+|divalent-metal-cation-transporter
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGVLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPKQIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASITSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>NC_017451.1|WP_005667107.1|728682_729420_+|5-oxoprolinase-subunit-PxpA
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELITHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLHIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>NC_017451.1|WP_005649963.1|741484_742033_-|oligoribonuclease
MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>NC_017451.1|WP_005649964.1|742103_743144_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRKLTQNQTRRIQSNNAKALHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGSCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>NC_017451.1|WP_005649965.1|743302_743560_+|HPr-family-phosphocarrier-protein
MYSKDVEIIASNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLALTQGTILTISADGEDEQQAVEHLVALIPTLE
>NC_017451.1|WP_005649967.1|743639_745367_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRNAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVIRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>NC_017451.1|WP_005654343.1|745426_745927_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRGDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>NC_017451.1|WP_005649971.1|746109_746322_+|hypothetical-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>NC_017451.1|WP_005649973.1|746436_746802_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRVEKAE
>NC_017451.1|WP_005649974.1|746865_747531_+|two-component-system-response-regulator-QseB
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>NC_017451.1|WP_005649975.1|747527_748883_+|two-component-system-sensor-histidine-kinase-QseC
MKNRSLTLRLISVLCLTALFVWLGSTFVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNPQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNNKMGFYNSHTYDDDDNWRIFWRMAANGELVIAVGQELDYREDLIEEMIFGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKESEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>NC_017451.1|WP_005667119.1|749159_751187_+|BCCT-family-transporter
MSLSQFMTKRTSFNPLVIGVTLFFILLLMAMIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITAGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVSVIVVVMCLAVFSAISGVGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFEQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: NC_017451_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017451_3

1433758-1433910

Orphan

Consensus_repeat	Method
ACTTCTACTGACAAAACAACAGTAGCTGATAATTCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017451_3

>merge|NC_017451|3|1433758-1433910|CRISPRCasFinder
ACTTCTACTGAAGAAACAACAGTAACTTCTACTGACAAAACAACAGTAGCTGATAATTCAAAAAGCAGTAAGCCAAATCGTAGACATAGAAGAAGTGTTAGCCAGCCTCAAGAGACTTCTACTGAAAAAACAACAGTAGCTGATAATTCAAAA

>NC_017451|3|3|1433758-1433910|CRISPRCasFinder
ACTTCTACTGAAGAAACAACAGTAACTTCTACTGACAAA	ACAACAGTAGCTGATAATTCAAAAAGCAGTAAGCCAAATCGTAGACATAGAAGAAGTGTTAGCCAGCCTCAAGAG
ACTTCTACTGAAAAAACAACAGTAGCTGATAATTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017451.1\|WP_005666002.1\|1434968_1435571_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NC_017451.1\|WP_005666007.1\|1438342_1439890_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NC_017451.1\|WP_020910149.1\|1427086_1428187_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NC_017451.1\|WP_005665985.1\|1416481_1418107_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NC_017451.1\|WP_020910145.1\|1419013_1420462_-\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NC_017451.1\|WP_005664214.1\|1443066_1444032_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NC_017451.1\|WP_005647913.1\|1418330_1418690_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179327
NC_017451.1\|WP_005666014.1\|1444270_1444756_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_017451.1\|WP_005666006.1\|1437180_1438257_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NC_017451.1\|WP_005666008.1\|1440446_1441568_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NC_017451.1\|WP_005666012.1\|1441620_1442397_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NC_017451.1\|WP_005666004.1\|1435595_1437005_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NC_017451.1\|WP_005666013.1\|1442389_1442971_+\|hypothetical-protein	unknown	unknown	unknown
NC_017451.1\|WP_020910148.1\|1425463_1426828_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NC_017451.1\|WP_005539760.1\|1418702_1418837_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_017451.1\|WP_005665998.1\|1428188_1429268_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|273173
NC_017451.1\|WP_005647967.1\|1444847_1445147_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NC_017451.1\|WP_020910147.1\|1422524_1425272_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273799
NC_017451.1\|WP_005647910.1\|1418106_1418367_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815
NC_017451.1\|WP_020910146.1\|1420558_1422511_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565

Protein	Function_ID	Function_description	E-value
NC_017451.1\|WP_005666002.1\|1434968_1435571_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.94801e-139
NC_017451.1\|WP_005666007.1\|1438342_1439890_-\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NC_017451.1\|WP_020910149.1\|1427086_1428187_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	2.47662e-179
NC_017451.1\|WP_005665985.1\|1416481_1418107_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NC_017451.1\|WP_020910145.1\|1419013_1420462_-\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	5.36069e-101
NC_017451.1\|WP_005664214.1\|1443066_1444032_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NC_017451.1\|WP_005647913.1\|1418330_1418690_-\|ribonuclease-P-protein-component	gnl\|CDD\|179327	PRK01732, rnpA, ribonuclease P; Reviewed.	6.41355e-68
NC_017451.1\|WP_005666014.1\|1444270_1444756_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	7.8983e-87
NC_017451.1\|WP_005666006.1\|1437180_1438257_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_017451.1\|WP_005666008.1\|1440446_1441568_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	6.57573e-139
NC_017451.1\|WP_005666012.1\|1441620_1442397_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	4.39598e-149
NC_017451.1\|WP_005666004.1\|1435595_1437005_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NC_017451.1\|WP_020910148.1\|1425463_1426828_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017451.1\|WP_005539760.1\|1418702_1418837_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	5.26841e-12
NC_017451.1\|WP_005665998.1\|1428188_1429268_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|273173	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.51916e-177
NC_017451.1\|WP_005647967.1\|1444847_1445147_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	3.281e-55
NC_017451.1\|WP_020910147.1\|1422524_1425272_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NC_017451.1\|WP_005647910.1\|1418106_1418367_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	6.47359e-47
NC_017451.1\|WP_020910146.1\|1420558_1422511_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	1.03771e-31

>NC_017451.1|WP_005665998.1|1428188_1429268_+|DNA-replication/repair-protein-RecF
MAISRLLVEKFRNLTAVDLHFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRIISYDEPHFTLFGQIQESQHQWSVGLQKLRQGNTLVKINGEDGNKISDLAHLLPMQLITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKVWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQLFLPELEINVSFHQGWEKNADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVLSRGQLKLLMCALRLAQGEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKKMFSVHNGIINALN
>NC_017451.1|WP_020910149.1|1427086_1428187_+|DNA-polymerase-III-subunit-beta
MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPNLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVCTISLEQELQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCNQVRMCLTDAFSSCLIENCEDSSCEYVIMPMRL
>NC_017451.1|WP_020910148.1|1425463_1426828_+|chromosomal-replication-initiator-protein-DnaA
MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQTLAQNPELRISLKEGVKPAPKIVESTPNTTLRSESAVDFQTESSTPIKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDILALQERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIGRAFDRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLSA
>NC_017451.1|WP_020910147.1|1422524_1425272_+|lactoferrin/transferrin-family-TonB-dependent-receptor
MTKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIRDRKDNEVTGLGKIIKTSESISREQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNRVALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENVKAVEISKGGSSSEYGNGALAGSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSIETQVHKDALKGVQSYERFIATTEDKPAYFVIQDECPNSNNYDKCVAKPPAILSTEKETVSVSDYTGANRIKPNPMKYESQSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYLRSTEDKDLSSRSFYPMQDHGAYQHIGDGRGVKYASGLYFDEHHRKQRVGIEYIYENKNKAGIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSYYHSDRNVYKEKHNMLQLNLEKKIQQNWLTHQIAFNLGFDDFTSALQHKDYLTRRVTATANSIPGTVGNPAKRRNGFREQPYLYPKPKAELVGGDLCNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDLGVGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWLDLSYRLSTGFRNPSFAEMYGWRYGGNNSDVYVGKFKPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELQKNGTTGKGNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVSSYLFDAIQPSRYIIGLGYDHPSNTWGINTMFTQSKAKSQNELLGQRALGSTSRNVKSTRKLTRAWHILDVSGYYMVNRSILFRLGVYNLLNYRYVTWEAVRQTAQGAVNQHQNVGNYTRYAASGRNYTLTLEMKF
>NC_017451.1|WP_020910146.1|1420558_1422511_+|transferrin-binding-protein-like-solute-binding-protein
MKSVSLITGGLSFLLSACSGGGGSFDVDDVSNPSSSKPRYQDDTSNQRKKSDLKKLFIPSLGGGMKLVAQNFAGAKEPSFLNENGYMTFSSLSTIEEDVKKENKENNPIDSIDKPKAQNPTQNRHGQQYVYSGLYYIQSWNLKDLPNKFYSGYYGYAYYFGNQTASALPVDGVATYKGTWDFITATKFNRRGIYPLFNSGSGAYNKRSAISEDIDDIENDPKNGAGLISEFSVDFGKKELTGELYYNKRKTNLNGSENRKHKLYDLEAKVYSNRFRGKVKPTAQKDSKEHPFTSEGTLEGGFYGPNAEELGGKFLANDEKVFGVFSAKETEETPKKPKLSRETLIDGKLTTFKTTDAKTDVKTNKITDTTANTKTNEKNFTTKDIPSFGEADYLLIDNYPVPLFPEENTSDFATSKLHKVGDKTYQVEACCSNLSYVKFGMYYEAPPKEEKEKDKEEKKEKEKQTTTTSIETYYQFLLGHRTPSSEIPKMGNVKYLGSWFGYITDGETSYSTSGDKERKNNAVADFNVDFVNKKLTGELKRHDNKNTVFNINATFQNGKNDFTGTATATNLVIDGNNSQTKNTPINITTEVKGAFYGPKASELGGYFTYNGKDTITKNTESSSAVPSSPNSENARAAVVFGARQQVETTK
>NC_017451.1|WP_020910145.1|1419013_1420462_-|DUF560-domain-containing-protein
MKNGVKQISLLSLIGLSLTNIAWAEVARPKNDTLTNTIQSAELKTSSFSSMPKKEIPNRHIISLSKSQLAQHPRLVLRGLIPALYQNNTQVVQLLLPLYKQFPQQDNFLLTWAKAIEAREQGDLTQSIAYYRELFARNASLLPLRYQLAQALFFNYENEAAKIQFEKLRTEVDDEKFLGVIDQYLLTLNQRNQWIWQVGLNFLNDDNLNNAPKSGTKIGSNWTAWEKESGQGVGYSLSVEKKWPWADHFFSKTMFNGNGKYYWDNKKYNEATVRIGGGLGYQTASVEVSLFPFKEKRWYAGGSSGTNTMKQYADKLGIRLEMIDWLSKTWQISTALEYGKSRYKTRKHLDGDYYFISSTLFYLPKSTQFWFVGMDFHRENTQALDNAYQQKALRFGWGQDWSYGISSRFTFSYANRAYREKDLIGIQQKNREYTTTITLWHRNIHFMGLTPKLSWDYQKSTSNHAFYRYDKNRIYLEIGKIF
>NC_017451.1|WP_005539760.1|1418702_1418837_-|50S-ribosomal-protein-L34
MKRTFQPSVLKRSRTHGFRARMATKNGRQVLARRRAKGRKSLSA
>NC_017451.1|WP_005647913.1|1418330_1418690_-|ribonuclease-P-protein-component
MVKLNFSRELRLLTPIQFKNVFEQPFRASTPEITILARKNNLEHPRLGLTVAKKHLKRAHERNRIKRLVRESFRLSQHRLPAYDFVFVAKNGIGKLDNNTFAQILEKLWQRHIRLAQKS
>NC_017451.1|WP_005647910.1|1418106_1418367_-|membrane-protein-insertion-efficiency-factor-YidD
MAETHSLGTKILIKIIRLYQIMISPFIGARCRFVPTCSCYGIEALKTHGLLKGGWLTLKRVLKCHPLNAGGFDPVPPKTNNNDEKK
>NC_017451.1|WP_005665985.1|1416481_1418107_-|membrane-protein-insertase-YidC
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQTRGRIITLENDVFRLKIDTLGGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLIGKNGIDTRFGRAQYQIEGDNFKLAEGQESLSVPLLFEKDGVTYQKIFVLKRGSYDLGVDYKIDNQSGQAIEVEPYGQLKHSIIESSGNVAMPTYTGGAYSSSETNYKKYSFADMQDNNLSIDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGPVVSIPAGSQETITSSLWTGPKLQNQMATVANNLDLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRMSQEMMKLYKEEKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPTPVTDPTQQKVMNFMPLIFMVFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRKK
>NC_017451.1|WP_005666002.1|1434968_1435571_-|3-isopropylmalate-dehydratase-small-subunit
MAGFKQLSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFHEWRYLDVDGTKPNPEFVLNYPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIAPSFADIFYNNSLNNHMLPIRLSEEEVEEIFQWVWANESKQIHVDLEAMTVTVGDKVYHFELDEFRRHCLLNGLDNIGLTFQHEEKISAYEKNIPAFLR
>NC_017451.1|WP_005666004.1|1435595_1437005_-|3-isopropylmalate-dehydratase-large-subunit
MAKTLYEKLFDSHIVYEAEGETPILYINRHLIHEVTSPQAFDGLRVANRQVRQVNKTFGTMDHSISTQVRDVNKLEGQAKIQVLELDKNTKATGIKLFDITTKEQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQARAKSMKIEVRGKVASGITAKDIILAIIGKTTMAGGTGHVVEFCGEAIRDLSMEGRMTVCNMAIEMGAKAGLIAPDETTFAYLKDRPHAPKGKDWDDAVAYWKTLQSDDDAQFDTVVTLEAKDIAPQVTWGTNPGQVISVNETIPNPQEMADPVQRASAEKALHYIGLEAGTNLKEVKVDQVFIGSCTNSRIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKEGLDKIFIAAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSPAMAAAAGMFGKFVDIREVALN
>NC_017451.1|WP_005666006.1|1437180_1438257_-|3-isopropylmalate-dehydrogenase
MQSYNIAVLAGDGIGPEVIAEAIKVLNKVQEKFGFKLNFNEFFVGGAAIDHCGYPLPAETLKGCDEADAILFGSVGGPKWTNLPPDQQPERGALLPLRKYFKLFCNLRPATLYKGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGREGEGAQTKAFDTEVYYKYEIERIARAAFDAAMKRNKKVTSVDKANVLQSSILWRETVTEVAKEYPEVTLEHIYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAADAIENAVQKVLASGHRTADLADDSTPVSTAEMGILIAQAI
>NC_017451.1|WP_005666007.1|1438342_1439890_-|2-isopropylmalate-synthase
MTDRVIIFDTTLRDGEQALKASLTVKEKLQIALALERLGVDVMEVGFPVSSQGDFESVQTIARHIKNARVAALSRAVDKDIDAAYEALKVAEAFRIHTFIASSALHVEAKLKRSFDDVVGMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAINAGATTVNIPDTVGFCLPNEYGNIIAQVRNLVPNIDKAVISVHCHNDLGMATANSLTAVQNGARQIECTINGIGERAGNTSLEEVVMAMKVRQDFMGVDTRINTQEIHRVSQMVSQLCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSGRAAVKGHMADMGYNEQDYDLDKLYDAFLKLADKKGQVFDYDLEALAFIDMQQGDEDRLVLDKLSAHSTKEYPATAFVQLKLDGEKLSTSSIGGNGPVDAVYNAILNLTGLEIKMSHYNLTAKGEGAEALGQVDIVVEHKGRKFHGVGLATDIVESSALALVHAINAIYRAHKVADIKNHKQH
>NC_017451.1|WP_005666008.1|1440446_1441568_+|DNA-protecting-protein-DprA
MNDITYTLLRLMQVPKLGSVGIDKILSNITLNELLNYDDVAFRQMGWGAIQIRRWFKPEAKFIEPALVWSQKEGNHLVNYFSPFYPFLLKQTANFPPLLFVKGNLTALSQRQMAMVGSRYCTTYGEYWAKHFATELSLAGFTITSGLALGIDGHCHQAVVNIQGQTIAVLGSGLEQIYPSKHQRLSAQIIENNGALVSEFLPNQAPIAANFPRRNRIISGLSVGTLVVEATEKSGSLITARYALEQNREVFAVPGNIQNESSQGCHRLIKQGAMLVENAKDILETFYQHSIHSQTEIDFDQIAVPNYTPPPDPRRLVEAPSHPKLYSRIGYTPVSIDDLAEEFNLSVDVLLVQLLDLELQDLIISENGLYKRV
>NC_017451.1|WP_005666012.1|1441620_1442397_+|peroxide-stress-protein-YaaA
MLAIISPAKTLDFESAVKNFPVSQPHFTDYSEQLIEVCRKLSPQDLSSLMSISDKLAGLNAARFAEWTKIHNEDNSRPALFAFKGDVYTGLDADSLSEDDVIFAQSHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNVITQAVQQAIDAQGDNVLVNLASDEYYKSVKENQLNAKIIKPVFLDNKNGKYKVISFYAKKARGLMCRYLIQHRLTDIEQLKEFDLGGYWFDSASSTETEFVFKRDINE
>NC_017451.1|WP_005666013.1|1442389_1442971_+|hypothetical-protein
MNKIFVILTALILSGCATKLTQLNVPTQLEYNGKHYVLTGSQDLGTIARYAYISKPDTLENWQSEIEILFDRNQPARSIKERIALRERIYRNTDVKDFHFDAIPENSTNPNELNGYVIYSPTKENPSWQVNVMKGRQLSQCGFVQFQYSQKIQQPTRSKHLSVNKVQRHLQKYIVDIERKHLQNLEWQLFCEK
>NC_017451.1|WP_005664214.1|1443066_1444032_+|ATP-dependent-6-phosphofructokinase
MIKKIAVLTSGGDAPGMNAAIRGVVRSALAEGLEVFGIYDGYQGLYNNKIKQLNRYSVSDVINRGGTFLGSARFPEFKDPNIRAKCAEILRSHGIDALVVIGGDGSYMGAKLLTEEHSFPCVGLPGTIDNDVAGTDYTIGYQTALQTAVDAIDRLRDTSSSHQRISIVEIMGRHCSDLTISAGIAGGCEYIVASEIEFNREELIQQIERSIIRGKRHAIIAITELLTDVHSLAKEIEARVGHETRATVLGHIQRGGSPCAFDRILASRMGAYAVDLLLQGKGGYCVGIQNEQLVHHDIIDAINNMQRVFKADWLKVAKRLE
>NC_017451.1|WP_005666014.1|1444270_1444756_+|SsrA-binding-protein-SmpB
MTKKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEAFLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELTSLFGKANRDGFTIVALSLYWKSAWAKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKNAHRRS
>NC_017451.1|WP_005647967.1|1444847_1445147_-|DNA-binding-transcriptional-regulator-Fis
MLEQQRNPADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGMG

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Crispr_ID: NC_017451_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017451_4

1852404-1852495

Orphan

Consensus_repeat	Method
TGGTGGGCTGAAGCCCACCCTACAACTACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017451_4

>merge|NC_017451|4|1852404-1852495|CRISPRCasFinder
TGGTGGGCTGAAGCCCACCCTACAACTACTGAAGCCCACCAAAATATCTTACGATTGTTTGTTGGTGGGCTGAAGCCCACCCTACAATTACT

>NC_017451|4|4|1852404-1852495|CRISPRCasFinder
TGGTGGGCTGAAGCCCACCCTACAACTACT	GAAGCCCACCAAAATATCTTACGATTGTTTGT
TGGTGGGCTGAAGCCCACCCTACAATTACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017451.1\|WP_020910216.1\|1860487_1861240_+\|DUF3800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378919
NC_017451.1\|WP_020910217.1\|1861354_1861918_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_017451.1\|WP_020910207.1\|1847474_1847795_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|226080
NC_017451.1\|WP_020910212.1\|1856636_1858553_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NC_017451.1\|WP_020910205.1\|1845060_1845501_-\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608
NC_017451.1\|WP_020910215.1\|1859669_1860476_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|161904
NC_017451.1\|WP_020910213.1\|1858562_1859099_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223625
NC_017451.1\|WP_020910211.1\|1852670_1855712_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NC_017451.1\|WP_020910210.1\|1850556_1852302_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227321
NC_017451.1\|WP_020910214.1\|1859114_1859666_+\|tRNA(ANN)-t(6)A37-threonylcarbamoyladenosine-modification-protein	unknown	unknown	gnl\|CDD\|182603
NC_017451.1\|WP_005661200.1\|1847178_1847487_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017451.1\|WP_005650820.1\|1845597_1845816_-\|cell-division-protein-ZapB	unknown	unknown	gnl\|CDD\|225616
NC_017451.1\|WP_020910206.1\|1845977_1846979_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|129430
NC_017451.1\|WP_020910218.1\|1861914_1862685_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_017451.1\|WP_005650818.1\|1844629_1845064_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NC_017451.1\|WP_020910208.1\|1847791_1848823_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|226080
NC_017451.1\|WP_005654546.1\|1855981_1856164_+\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|227024
NC_017451.1\|WP_020910209.1\|1848905_1850564_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|224055
NC_017451.1\|WP_005650837.1\|1856156_1856453_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NC_017451.1\|WP_005650817.1\|1843840_1844317_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NC_017451.1\|WP_020910216.1\|1860487_1861240_+\|DUF3800-domain-containing-protein	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	0.00962319
NC_017451.1\|WP_020910217.1\|1861354_1861918_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	2.27746e-117
NC_017451.1\|WP_020910207.1\|1847474_1847795_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	2.2422e-25
NC_017451.1\|WP_020910212.1\|1856636_1858553_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NC_017451.1\|WP_020910205.1\|1845060_1845501_-\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	4.71098e-89
NC_017451.1\|WP_020910215.1\|1859669_1860476_+\|shikimate-dehydrogenase	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	1.21811e-130
NC_017451.1\|WP_020910213.1\|1858562_1859099_+\|hypothetical-protein	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	2.92803e-31
NC_017451.1\|WP_020910211.1\|1852670_1855712_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	9.90802e-80
NC_017451.1\|WP_020910210.1\|1850556_1852302_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NC_017451.1\|WP_020910214.1\|1859114_1859666_+\|tRNA(ANN)-t(6)A37-threonylcarbamoyladenosine-modification-protein	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	8.66111e-85
NC_017451.1\|WP_005661200.1\|1847178_1847487_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000139969
NC_017451.1\|WP_005650820.1\|1845597_1845816_-\|cell-division-protein-ZapB	gnl\|CDD\|225616	COG3074, COG3074, Uncharacterized protein conserved in bacteria [Function unknown].	7.07035e-14
NC_017451.1\|WP_020910206.1\|1845977_1846979_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|129430	TIGR00330, Fructose-16-bisphosphatase_class_2, fructose-1,6-bisphosphatase, class II. This model represents GlpX, one of three classes of bacterial fructose-1,6-bisphosphatases. This form is homodimeric and Mn2+-dependent, and only very distantly related to the class I fructose-1,6-bisphosphatase, the product of the fbp gene, which is homotetrameric and Mg2+-dependent. A third class is found as one of two types in Bacillus subtilis. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase. [Energy metabolism, Pentose phosphate pathway].	0
NC_017451.1\|WP_020910218.1\|1861914_1862685_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	3.58543e-96
NC_017451.1\|WP_005650818.1\|1844629_1845064_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	3.0711e-95
NC_017451.1\|WP_020910208.1\|1847791_1848823_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	1.5574e-84
NC_017451.1\|WP_005654546.1\|1855981_1856164_+\|shikimate-5-dehydrogenase	gnl\|CDD\|227024	COG4679, COG4679, Phage-related protein [Function unknown].	1.66598e-08
NC_017451.1\|WP_020910209.1\|1848905_1850564_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.5085e-125
NC_017451.1\|WP_005650837.1\|1856156_1856453_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	4.09836e-10
NC_017451.1\|WP_005650817.1\|1843840_1844317_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.62892e-105

>NC_017451.1|WP_020910210.1|1850556_1852302_-|ABC-transporter-ATP-binding-protein/permease
MMIDKRLINTVADSKKWIGVTVLWNWVALVGGIISAVVFSYILQAAYFHELSLLSAVILGIVLIAALALRAFAGKKSVQASYFASTKVKHELRSLIYRKLASMPLNQVNQQSTSSIIQVASEGVEQLEIYFGRYLPQLFYSLLAPLTLFVFLIFFSFKTAVILLICVPLIPMSIIAVNKIAKKLLAKYWSIYVGLGSSFLDNLQGLITLKIYQDDAYKAKAMDKEAEHFRKITMKVLTMQLNSVSLMDLLAYGGAAIGILTALLQFQNAQLSVLGVILFILLSSEFFIPLRLLGSFFHVAMNGKAASDKIFTLLDTPVETQQSAVNFEAKNNLQVETKDLHFSYSEEKPAITGLDLSILPNQLTVFVGKSGCGKSTLVSLLMGFNQAQQGEILFNGQNALNIDRTSFYQKVSLVSHSSYVFKGSLRENMTMAKIDATDEQIYACLEQVNLAHFVRENGGLDMQLLSRGANLSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQGTHESLMAKQGAYAEMFQQQKDLEQIREVANA
>NC_017451.1|WP_020910209.1|1848905_1850564_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKNGFVVMGHLLKLVTPLAHIMAFTITMGTLGFLAAIFIMVLGAMGLVNLLNFDTHLSFSGILTALIVLAVARGVLRYLEQMSGHYIAFKLLALLRDKVFSSLRRLAFVKLQDKQAGQLVSLVTNDIELLEVFYAHTIAPIMIAFFTSAILLLVFAHLSGWFVLVALAAYLTVGVILPIITTKLAREDGRRYRELVGEMNDFFLDSVRGMKEIQLFGYAKQRLAEIQQRSQKIDTAFERIKDQEAKVRVYTEVAVSVFNIIMLFTGLILFSLDKIDFAAFLIGVILLMSSYGPVIALSNLSSNLLQTLASGERVLSLLAEEPELKDVESAVDLKEVSRIDVENLNFAYGEEQILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTRSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMILKSLLNVKAEKLIILVSHRQSTMAICDQVIGIENGRMS
>NC_017451.1|WP_020910208.1|1847791_1848823_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MNFCRILLKPLKKNEALSGYSAEGLHYLTGNKHFNPELPFSRQEFITVKPQKQQGMSISGFQPKLQLIIEDDHFNSINQQGNYILKPSPEEYPFLAENEHATMRIMKELEFDVPENGLVPFAGEQNHKEFAFVIKRFDRDEQQKPMHQEQLDGAMNIRDKYGKIGADNEQYVSYERVAKFILQHTENHLAQQREIFRRIIYAYLLGNNDLHLRNFSFIYPKNSHPKLAPIYDFVSVSPYPEIFNSTLLALPLLAREEGNATLAKGFNTQYGEYIGDDFVEFGENIGLNKNVIIQKLIPEITQEKEKVEQIYSQSFMPQPHIDCVLKTYRKRLALLNLLNEPEL
>NC_017451.1|WP_020910207.1|1847474_1847795_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MRDLVRSGKVFLYGEFIGLLREDHHGFHFSYNPDYQGIPLSLSFPIEQSPFHSDTLFPYFASLVPEGWLKHKYAFHQRIDEGDMFRFLLNNGENMLGAVQIQEEKQ
>NC_017451.1|WP_005661200.1|1847178_1847487_+|helix-turn-helix-transcriptional-regulator
MNNLSAQLENQIDELKKLQKSVITYEQAQRQQLYAGKITDLKAFGKMLNDKRKSLGIELSMLELQTGVSISTLNRLFQDPSQVRFTTVFLVAQTLGVSLCAI
>NC_017451.1|WP_020910206.1|1845977_1846979_+|class-II-fructose-bisphosphatase
MNRALAIEFSRVTEAAALVAYTWLGRGNKNAADDAAVKAMRYMLNLIHMDAEIVIGEGEIDEAPMLYVGEKVGSGLGELVSIAVDPIDGTRMTAMGQSNAISVLAAGGKNTFLKAPDMYMEKLVVGSNVKGIIDLNLPLEQNLRRIASKLGKSLSDLTVMVLAKPRHDAVIKQIHNLGAKVLAIPDGDVAGSVLCCLPDAEVDLLYGIGGAPEGVAAAAAIRALGGDMQARLIPRNEVKSDTEENKKIAANEIQRCAALGVKVNEVLKLEDLVRDDNLVFTATGITNGDLLKGISRKGNLASTETILIRGKSRTIRKIQSIHYLDDLYKILNI
>NC_017451.1|WP_005650820.1|1845597_1845816_-|cell-division-protein-ZapB
MSLEILDQLEEKIKQAVETIQLLQLEVEELKEKNAESQRNIENLQTENEQLKNEHRNWQEHIRSLLGKFDNV
>NC_017451.1|WP_020910205.1|1845060_1845501_-|FMN-binding-protein-MioC
MHICILSGSTLGGAEYVAEHLNDVLETQGFSTALFHGPNLSDIENEKIWLVVTSTHGAGELPDNLKPLFDELANSQKDFSDVRFAVVGLGNSDYDTFCYAADKVEQTLQAKSAVKICETLKIDVLNVDDQESYAEEWLPSFIEGLK
>NC_017451.1|WP_005650818.1|1844629_1845064_-|D-tyrosyl-tRNA(Tyr)-deacylase
MIALIQRVSQAKVNVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKLPVSTGQFAADMQVSLTNDGPVTFWLNV
>NC_017451.1|WP_005650817.1|1843840_1844317_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRR
>NC_017451.1|WP_020910211.1|1852670_1855712_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MTNFRLNVLAYSVMLGLTAGVAYAAQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQDGNVSEQLEQINVSGSTENSDTKTPPKIAETVKTAKTLEREQANNIKDIVKYETGVTVVEAGRFGQSGFAIRGVDENRVAINIDGLRQAETLSSQGFKELFEGYGNFNNTRNGAEIETLKEVNITKGANSIKSGSGSLGGSVIYKTKDARDYLLNKDYYVSYKKGYATENNQSFNTLTLAGRYKKFDVLVVTTSRNGHELENYDYKNADSLTQGKRREKADPYKIEQDSTLLKLSFNPTENHRFTLAADLYEHRSRGQDLSYTLKYQKTDPDLPEKDSRHTNDKTKRRNISFSYENFSQTPFWDTLKITYSDQRIKTRARTDDYCDAGVRHCEGTENPTGLKITNGKITRRDGSELQFEKKDKNTDNIYDFDKFIDTNNQVIKGKLKLGRTGETWYDCSIFDCKSKINVFEGEQPYGTTGTWKKEVELETEELNGKTFARIKNENNSRKIKSILPSSPGYLDRLWQERDLDTNTQQLNLDLTKDFKTWRVEHNLQYGSSYNTTMKRMVNRAGNDATDVQWWATPTLGKSIISNKPHTCETASEWNANLCPRVDPEFSFLLPIKTKEKSVYLFDNVVITDYLSFDLGYRYDNIHYQPKYKHGVTPKLPDDIVKGLFIPLPKGSPCSYCKDGYSSPDEDQIKQNVIDNINYIASQKKKYKAHSYSFASTIDPTNFLRLQLKYSKGFRAPTSDEMYFTFKHPDFTILPNTNLKPEIAKTKEIAFTLHNDDWGFISTSLFKTNYKNFIDLIFKETREFKLASGGSSLPFSLYQNINRDSAVVKGIEINSKVFLGKMAKFMDGFNLSYKYTYQKGRMDGNIPMNAIQPKTMVYGLGYDHPSQKFGFNFYTTHVATKNPEDTYDIYAKERGERDTTIKWRSKSYTILDLIGYVQPIKNLTIRAGVYNLTNRKYITWDSARSIRSFGTSNVIDQTTGLGINRFYAPGRNYKMSVQFEF
>NC_017451.1|WP_005654546.1|1855981_1856164_+|shikimate-5-dehydrogenase
MYEILFYRDQNDIEPVKEYLLSLAQNESKDSRIKLNKIRDYVIQTAQQRLSELKERLKNE
>NC_017451.1|WP_005650837.1|1856156_1856453_+|helix-turn-helix-transcriptional-regulator
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKLLAPLGKTLSIVPLRVKNA
>NC_017451.1|WP_020910212.1|1856636_1858553_+|ABC-transporter-ATP-binding-protein
MIIFSNLSLKRGQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELTPEGGEVNYPANWRVSWVNQETPALDISAIDYVIQGDREYCRLQQELEQANERNDGNAIARIHGQLETLDAWTIQSRAASLLNGLGFSQEETTQPVKAFSGGWRMRLNLAQALLCPSDLLLLDEPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFEVQRATKLAQQTAMYRQQQQKISHLQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYVDNPFTFEFRPPQSLPNPLVMIEQASAGYGCGESAVEILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAKGVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHNKKVEEFKGDLEDYQKWLSEQNSTSENKVSEKVGDNENSVQNRKEQKRREAELRQQTAPLRKKITQLEEKMNKFSSELASIENQLADAELYNAENKEKLTALLAQQVDVKKALDDVETEWMTAQEELEEMLQA
>NC_017451.1|WP_020910213.1|1858562_1859099_+|hypothetical-protein
MNQSLFHHSKQQEYCPQCSAPLQIKQGKKGLFLGCSAYPECDYLRPLQRVEHKVLKTLDEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQGKIFYGCDNFPKCKFSLPTKPYTVPCPTCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ
>NC_017451.1|WP_020910214.1|1859114_1859666_+|tRNA(ANN)-t(6)A37-threonylcarbamoyladenosine-modification-protein
MNREQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQLSRLQGKYERPTTWIVPAKSTTPYFLTGKFDSIAVRLCDHSSVKALCELVGFALTSTSANLTGEPPCRTADEVRLQFGADFPVLDEIVGDARNPSEIRDLRTNQLFRQG
>NC_017451.1|WP_020910215.1|1859669_1860476_+|shikimate-dehydrogenase
MDLYAVWGNPIVQSKSPLIQSKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEGGAKGCNITSPFKERAYQLADEYSQRAKLAEACNTLKKLDDGKLYADNTDGIGLATDLQRLNWLHPNQRILILGAGGATKGVLLPLLQAQQNIVLANRTFSKAKELAERFKPYGNIQAASMDSIPLQTYDVVINATSAGLSGGTASVDAETLKLGSAFYDMQYAKGTDTPFIKLCKSLGLTNLSDGFGMLVAQAAHSFHLWRGVMPDFVAVYEQLK
>NC_017451.1|WP_020910216.1|1860487_1861240_+|DUF3800-domain-containing-protein
MKSKYSDFMVYVDESGDHSLQSIDKNYPVFVLAFCIFYKDHYRNNIVPQIQKLKFDYFGHDMVILHEHEIRKEKGDFNIFTSREQREGFMERISSIIENTNFILAACAIDKRKIPQNETTHPYHFSLKHCLETLYEFVCEKHQEDKITFVAVESRGRNEDRELELEFLRICDGQNKFKKSLPFQVKIVPKQINSVGLQVADLVARPIGRHILDSNQPNRAFEILKKKFYCEGGRKILGENFDQKGLKHFP
>NC_017451.1|WP_020910217.1|1861354_1861918_+|DNA-3-methyladenine-glycosylase-I
MQQITRCPWVGEQPIYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAFHQFDPKKIAKMTALDIDACMQNTGLIRHRAKLEAMVKNAKAYLEMEKCGENFSDFIWSFVNHKPIVNDVPDLRSVPAKTEASKALSKALKKRGFVFVGETTCYAFMQSMGLVDDHLNDCPCKTR
>NC_017451.1|WP_020910218.1|1861914_1862685_-|glycosyltransferase-family-2-protein
MPTISVAMIVKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENRDWQGFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNNRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGITHALGCFVKMYLLKVGFLDGKQGFLLAVLSAHSTFVKYADLWERDQHKHKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017451_1	1.2\|602340\|44\|NC_017451\|CRISPRCasFinder	602340-602383	44	NC_011409	Haemophilus influenzae plasmid ICEhin1056, complete sequence	6039-6082	5	0.886
NC_017451_1	1.1\|602268\|44\|NC_017451\|CRISPRCasFinder	602268-602311	44	NC_011409	Haemophilus influenzae plasmid ICEhin1056, complete sequence	6075-6118	6	0.864
NC_017451_1	1.2\|602340\|44\|NC_017451\|CRISPRCasFinder	602340-602383	44	NC_011409	Haemophilus influenzae plasmid ICEhin1056, complete sequence	6111-6154	13	0.705

1. spacer 1.2|602340|44|NC_017451|CRISPRCasFinder matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 5, identity: 0.886

gtccccgcacactggttaaaatttgtactttgtaaagtcccttt	CRISPR spacer
accctagcacactggttaaaatttgtactttgtaaagccccttt	Protospacer
..**. *******************************.******

2. spacer 1.1|602268|44|NC_017451|CRISPRCasFinder matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 6, identity: 0.864

accctagcacagtggttaatttttgttcactgtgcaaccctagc	CRISPR spacer
gcccctttacagtggttaatttttgttcaccgtgcaaccctagc	Protospacer
.***.  .**********************.*************

3. spacer 1.2|602340|44|NC_017451|CRISPRCasFinder matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 13, identity: 0.705

gtccccgcacactggttaaaatttgtactttgtaaagtcccttt	CRISPR spacer
ccttttatcatttggttaaaatttgtactttgtaaagccccttt	Protospacer
 .......   .*************************.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

473002 : 575672

Haemophilus_virus(61.11%)

tail,head,transposase,tRNA,integrase,holin,portal,capsid,terminase

attL 488960:488978|attR 575875:575893

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020910009.1\|473002_473788_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	NA	NA	NA	NA
WP_005668507.1\|473772_474882_-	murein transglycosylase A	NA	NA	NA	NA
WP_005668505.1\|475276_477412_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_020910010.1\|484019_486254_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_005667927.1\|486614_487244_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_005667925.1\|487571_488861_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	52.1
488960:488978	attL	NA	NA	NA	NA
WP_005654245.1\|489027_489369_+	hypothetical protein	NA	NA	NA	NA
WP_005628250.1\|489458_489938_-	hypothetical protein	NA	NA	NA	NA
WP_005667922.1\|489939_490710_-	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_005667920.1\|490837_492100_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_005667917.1\|492380_493769_+	signal recognition particle protein	NA	NA	NA	NA
WP_005649657.1\|493993_497014_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.9e-21	24.0
WP_005649659.1\|497114_498416_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_005649661.1\|498587_500051_-	ATPase	A0A1B3AYT3	Gordonia_phage	4.1e-45	30.9
WP_005649662.1\|500179_502552_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	1.8e-21	28.1
WP_005649665.1\|502731_503487_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_020910013.1\|503783_505679_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.2e-115	36.4
WP_005667911.1\|505757_506102_+	ArsC family reductase	NA	NA	NA	NA
WP_020910014.1\|506129_507263_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_005667908.1\|507264_507945_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
WP_005667906.1\|507979_509035_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-27	32.7
WP_020910015.1\|509036_510473_-	iron ABC transporter permease	NA	NA	NA	NA
WP_005667903.1\|510674_511673_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005667901.1\|511824_512106_-	hypothetical protein	NA	NA	NA	NA
WP_005667899.1\|512306_513062_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005649695.1\|513411_513732_+	hypothetical protein	NA	NA	NA	NA
WP_005667897.1\|513933_515040_+	hypothetical protein	NA	NA	NA	NA
WP_005667894.1\|515161_516421_+	GntP family permease	NA	NA	NA	NA
WP_005667892.1\|516429_517566_+	glycerate kinase	W6LM47	Streptococcus_phage	5.0e-54	44.1
WP_005667890.1\|517605_518319_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_005649704.1\|518642_521090_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_005667888.1\|521102_522047_+	homoserine kinase	NA	NA	NA	NA
WP_005649711.1\|522089_523367_+	threonine synthase	NA	NA	NA	NA
WP_005667766.1\|523931_524945_-\|integrase	site-specific integrase	Q94N03	Haemophilus_virus	7.5e-195	100.0
WP_005667764.1\|524944_525709_-	hypothetical protein	P79672	Haemophilus_phage	6.3e-138	100.0
WP_005667762.1\|525718_525901_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	3.5e-10	45.8
WP_005667760.1\|525900_526476_-	phage repressor protein CI	Q94N02	Haemophilus_virus	6.1e-109	100.0
WP_005667758.1\|526594_526807_+	hypothetical protein	P79674	Haemophilus_phage	1.2e-30	100.0
WP_015967400.1\|526942_527446_+	hypothetical protein	P79675	Haemophilus_phage	1.8e-88	100.0
WP_005667757.1\|527464_527833_+	hypothetical protein	Q94N01	Haemophilus_virus	1.6e-67	100.0
WP_005667755.1\|527832_528018_+	hypothetical protein	Q775F8	Haemophilus_virus	8.0e-31	100.0
WP_015967401.1\|528029_528311_+	hypothetical protein	Q775F7	Haemophilus_virus	6.1e-46	100.0
WP_005667751.1\|528361_528622_+	hypothetical protein	Q775F6	Haemophilus_virus	3.6e-45	100.0
WP_005667749.1\|528624_530952_+	replication endonuclease	Q94N00	Haemophilus_virus	0.0e+00	100.0
WP_005667746.1\|530963_531275_+	hypothetical protein	Q94MZ9	Haemophilus_virus	2.9e-49	100.0
WP_005667744.1\|531284_531803_+	phage N-6-adenine-methyltransferase	Q94MZ8	Haemophilus_virus	4.6e-100	100.0
WP_005667742.1\|531898_532075_+	addiction module toxin, HicA family	D6R431	Bacillus_phage	4.5e-15	67.8
WP_005642973.1\|532103_532505_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	2.3e-70	100.0
WP_071819916.1\|532531_532792_-	ogr/Delta-like zinc finger family protein	Q1I103	Pasteurella_virus	2.4e-25	58.1
WP_005667739.1\|532870_533908_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	1.3e-199	100.0
WP_015967402.1\|533897_535721_-\|terminase	terminase ATPase subunit family protein	Q94MZ6	Haemophilus_virus	0.0e+00	100.0
WP_005667735.1\|535924_536818_+\|capsid	GPO family capsid scaffolding protein	Q94MZ5	Haemophilus_virus	1.5e-151	100.0
WP_005667734.1\|536820_537831_+\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	1.4e-188	100.0
WP_005667733.1\|537844_538690_+\|terminase	terminase endonuclease subunit	Q94MZ3	Haemophilus_virus	1.3e-155	100.0
WP_005667732.1\|538682_539135_+\|head	head completion/stabilization protein	Q94MZ2	Haemophilus_virus	3.3e-78	100.0
WP_005667731.1\|539122_539608_+\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	2.0e-89	100.0
WP_005667730.1\|539597_540293_+	hypothetical protein	Q94MZ0	Haemophilus_virus	1.3e-126	100.0
WP_015967404.1\|540564_541695_+	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	2.6e-220	100.0
WP_005667727.1\|541698_542151_+	DUF2597 family protein	Q94MY8	Haemophilus_virus	6.9e-76	100.0
WP_005667726.1\|542237_542474_+\|holin	holin	Q94MY7	Haemophilus_virus	4.8e-36	100.0
WP_005667725.1\|542466_543027_+	lysozyme	Q94MY6	Haemophilus_virus	7.2e-99	100.0
WP_005667724.1\|543011_543359_+	hypothetical protein	Q94MY5	Haemophilus_virus	1.0e-55	100.0
WP_005667723.1\|543551_543860_+	hypothetical protein	Q775G2	Haemophilus_virus	1.2e-47	100.0
WP_005667722.1\|543868_544039_+	hypothetical protein	Q1I0Y8	Pasteurella_virus	4.2e-18	76.8
WP_005667721.1\|544048_546178_+	hypothetical protein	Q94MY4	Haemophilus_virus	0.0e+00	100.0
WP_005667720.1\|546181_546517_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	6.1e-53	100.0
WP_020910021.1\|546509_547679_+	hypothetical protein	Q94MY2	Haemophilus_virus	2.3e-219	100.0
WP_005667718.1\|547688_548216_+	hypothetical protein	Q94MY1	Haemophilus_virus	7.5e-98	100.0
WP_015967408.1\|548239_550972_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	0.0e+00	100.0
WP_005668720.1\|550983_551616_+	hypothetical protein	Q94MX9	Haemophilus_virus	1.6e-110	100.0
WP_005668718.1\|551628_552396_+	hypothetical protein	Q94MX8	Haemophilus_virus	1.5e-134	100.0
WP_005668715.1\|552382_552943_+	hypothetical protein	Q94MX7	Haemophilus_virus	3.3e-83	100.0
WP_005668713.1\|552943_554545_+	hypothetical protein	Q94MX6	Haemophilus_virus	1.1e-285	100.0
WP_005653466.1\|555598_556375_+	hypothetical protein	NA	NA	NA	NA
WP_005653468.1\|556369_557182_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_020910023.1\|557272_559180_-	hypothetical protein	NA	NA	NA	NA
WP_020910024.1\|559416_560121_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_012564949.1\|560436_561135_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044509710.1\|561424_561712_-	hypothetical protein	NA	NA	NA	NA
WP_005653495.1\|561960_562152_+	hypothetical protein	NA	NA	NA	NA
WP_020910025.1\|562166_562757_+	recombinase family protein	A0A219YA40	Aeromonas_phage	1.2e-22	37.2
WP_020910026.1\|562839_563283_+	hypothetical protein	NA	NA	NA	NA
WP_020910027.1\|563359_564121_-	N-6 DNA methylase	A0A2K9V411	Faecalibacterium_phage	4.4e-22	29.8
WP_020910028.1\|564224_565178_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.4e-41	37.3
WP_005687602.1\|565470_565719_-	hypothetical protein	NA	NA	NA	NA
WP_005653503.1\|565721_565955_-	hypothetical protein	NA	NA	NA	NA
WP_044509376.1\|566039_566396_-	hypothetical protein	NA	NA	NA	NA
WP_048813163.1\|566770_567214_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_005687598.1\|567210_568152_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_005687597.1\|568166_570167_+	integrating conjugative element protein	I6NLI9	Burkholderia_phage	2.2e-28	50.0
WP_005667853.1\|570182_570590_+	hypothetical protein	NA	NA	NA	NA
WP_005667851.1\|570634_570814_-	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|571037_571898_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|571945_572503_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|572666_575672_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
575875:575893	attR	NA	NA	NA	NA

DBSCAN-SWA_2

987863 : 1003760

Haemophilus_phage(38.89%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005666912.1\|987863_988199_-	STAS-like domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	8.1e-13	41.5
WP_005650507.1\|988201_989281_-	hypothetical protein	NA	NA	NA	NA
WP_005650509.1\|989332_990031_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.4e-112	84.5
WP_005650512.1\|990141_990330_+	DNA-binding protein	Q7Y5W4	Haemophilus_phage	6.5e-28	93.5
WP_005650513.1\|990378_990819_+	hypothetical protein	NA	NA	NA	NA
WP_005650515.1\|990865_991534_+	hypothetical protein	D0UIL6	Aggregatibacter_phage	9.0e-56	52.6
WP_005650516.1\|991530_992229_+	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	9.8e-61	65.4
WP_005650518.1\|992225_992846_+	replication P	A0A0M3LS65	Mannheimia_phage	1.9e-28	39.1
WP_005650520.1\|992842_993067_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_005650522.1\|993103_993523_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.9e-56	75.4
WP_005650527.1\|994160_994826_+	HNH endonuclease	A0A2I7QND8	Vibrio_phage	2.9e-38	42.8
WP_005650528.1\|994856_995228_+	hypothetical protein	NA	NA	NA	NA
WP_005666914.1\|995277_996243_-	hypothetical protein	Q8HA04	Enterobacteria_phage	1.2e-88	58.8
WP_005650531.1\|996600_997242_+	hypothetical protein	D0UIM5	Aggregatibacter_phage	5.5e-34	40.9
WP_005650535.1\|997583_997940_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_020910072.1\|997908_998511_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	1.1e-57	54.9
WP_005650540.1\|998503_998839_+	DUF2570 domain-containing protein	Q7Y5U9	Haemophilus_phage	1.2e-21	56.1
WP_005650541.1\|998738_999020_+	hypothetical protein	Q776X1	Haemophilus_phage	4.2e-31	74.4
WP_005650543.1\|999058_999571_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	8.0e-20	39.2
WP_005650545.1\|999557_1000901_+\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	4.1e-124	53.5
WP_005650547.1\|1000902_1002234_+	DUF1073 domain-containing protein	D0UIJ6	Aggregatibacter_phage	4.9e-210	82.9
WP_005650554.1\|1003583_1003760_+	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1

DBSCAN-SWA_3

1234783 : 1243297

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005647463.1\|1234783_1235467_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.6e-54	50.2
WP_005647466.1\|1235459_1235885_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	7.8e-21	42.7
WP_005667416.1\|1235885_1236521_+	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	2.9e-11	35.2
WP_020910113.1\|1237132_1239316_+	DNA helicase II	A7KV33	Bacillus_phage	1.9e-115	37.6
WP_020910114.1\|1239435_1240407_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005667420.1\|1240421_1241309_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005647479.1\|1241318_1242311_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
WP_005667422.1\|1242313_1243297_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-17	27.3

DBSCAN-SWA_4

1702534 : 1798810

Mannheimia_phage(43.9%)

tail,head,tRNA,protease,plate,integrase,portal,capsid,terminase

attL 1727564:1727584|attR 1785296:1785316

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005648541.1\|1702534_1704253_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_005648542.1\|1704337_1706197_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.5e-87	37.1
WP_005655473.1\|1706198_1706504_-	iron donor protein CyaY	NA	NA	NA	NA
WP_005652274.1\|1706601_1706718_+	hypothetical protein	NA	NA	NA	NA
WP_005666280.1\|1706765_1708013_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_005648546.1\|1708218_1708845_+	response regulator	NA	NA	NA	NA
WP_005648547.1\|1708906_1709347_-	DUF2489 domain-containing protein	NA	NA	NA	NA
WP_005648548.1\|1709350_1709911_-	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_005648549.1\|1716157_1716712_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_005648552.1\|1716887_1717925_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	8.9e-34	39.5
WP_005648554.1\|1717914_1718604_+	ABC transporter permease	NA	NA	NA	NA
WP_005648557.1\|1718642_1719464_+	MetQ/NlpA family lipoprotein	NA	NA	NA	NA
WP_005668636.1\|1719765_1720533_-	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_005658559.1\|1720562_1721141_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_005668633.1\|1721167_1721827_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_005668631.1\|1721829_1724601_-	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	5.1e-20	38.4
WP_005661551.1\|1724795_1725545_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.4e-17	29.5
WP_005668629.1\|1725774_1727544_+	L-fucose isomerase	NA	NA	NA	NA
1727564:1727584	attL	NA	NA	NA	NA
WP_005654478.1\|1729043_1729478_+	L-fucose mutarotase	NA	NA	NA	NA
WP_005648575.1\|1729497_1730148_+	L-fuculose-phosphate aldolase	NA	NA	NA	NA
WP_005668621.1\|1730186_1731473_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_005668619.1\|1732000_1732849_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.0e-32	39.3
WP_020910181.1\|1732986_1734372_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_005668493.1\|1734510_1735326_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_005648584.1\|1735335_1736139_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_005668491.1\|1736150_1737158_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_005668490.1\|1737231_1739763_-	class I adenylate cyclase	NA	NA	NA	NA
WP_005668488.1\|1740068_1741280_+	uroporphyrin-III C-methyltransferase	NA	NA	NA	NA
WP_005668486.1\|1741290_1742577_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_005668481.1\|1743855_1744866_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.4e-116	60.4
WP_005668479.1\|1744875_1746651_-	oxidoreductase	A0A0M3LRV4	Mannheimia_phage	1.2e-216	65.1
WP_005668477.1\|1746815_1747640_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	1.4e-66	63.2
WP_005668475.1\|1747660_1748710_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	4.4e-89	51.6
WP_011272685.1\|1748721_1749372_+\|terminase	terminase	Q19US0	Mannheimia_phage	4.1e-45	46.0
WP_005668469.1\|1749665_1750172_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	2.8e-33	51.0
WP_005668467.1\|1750171_1750381_+\|tail	tail protein	E5G6M9	Salmonella_phage	4.5e-06	40.6
WP_005668464.1\|1750382_1750604_+	hypothetical protein	NA	NA	NA	NA
WP_005668462.1\|1750596_1751115_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
WP_005668457.1\|1751099_1751450_+	chemotaxis protein	NA	NA	NA	NA
WP_005633796.1\|1751624_1751840_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.4e-10	47.9
WP_020910182.1\|1751836_1752307_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	5.6e-28	47.8
WP_020910183.1\|1752306_1752765_+	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.4e-23	45.6
WP_005668444.1\|1752742_1753015_-	hypothetical protein	NA	NA	NA	NA
WP_005668442.1\|1753083_1755819_+\|tail	phage tail tape measure protein	K7RVY9	Vibrio_phage	1.4e-73	35.9
WP_005668440.1\|1755919_1756474_+	hypothetical protein	NA	NA	NA	NA
WP_005653088.1\|1756482_1756911_+	hypothetical protein	NA	NA	NA	NA
WP_005668437.1\|1757014_1757614_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	7.1e-44	66.0
WP_005663412.1\|1757615_1757954_+	hypothetical protein	Q19UQ6	Mannheimia_phage	4.5e-19	56.6
WP_005663411.1\|1757950_1758865_+\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	5.1e-94	59.2
WP_005663410.1\|1758851_1759391_+\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	1.2e-50	52.8
WP_005668434.1\|1759399_1761877_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	7.8e-270	73.3
WP_005668432.1\|1761887_1762439_+	hypothetical protein	Q94MX9	Haemophilus_virus	2.7e-42	50.5
WP_005668430.1\|1762431_1762911_+	hypothetical protein	F6MIM0	Haemophilus_phage	2.7e-46	55.0
WP_005663399.1\|1763055_1764240_+\|tail	tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.0e-102	48.2
WP_005663396.1\|1764243_1764750_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	7.1e-53	59.5
WP_005668426.1\|1764833_1765133_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	9.7e-10	40.7
WP_005633772.1\|1765132_1765279_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
WP_005668423.1\|1765446_1765884_+\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	1.2e-40	57.4
WP_005668421.1\|1765883_1767077_+	phage late control D family protein	R9QBT3	Mannheimia_phage	1.0e-105	52.5
WP_005668419.1\|1767102_1767342_-	nuclease	NA	NA	NA	NA
WP_032826233.1\|1767338_1767827_-	hypothetical protein	Q19UP0	Mannheimia_phage	4.2e-34	44.3
WP_005668415.1\|1767856_1768564_-	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	4.8e-31	36.2
WP_005668413.1\|1768699_1768939_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005633751.1\|1769304_1769595_+	hypothetical protein	NA	NA	NA	NA
WP_005668410.1\|1769686_1769947_+	hypothetical protein	NA	NA	NA	NA
WP_005668407.1\|1769964_1770345_+	hypothetical protein	NA	NA	NA	NA
WP_005668404.1\|1770348_1770591_+	hypothetical protein	NA	NA	NA	NA
WP_005655052.1\|1770716_1771025_+	hypothetical protein	NA	NA	NA	NA
WP_020910187.1\|1771034_1773221_+	replication endonuclease	Q94N00	Haemophilus_virus	1.2e-165	42.5
WP_005668397.1\|1773239_1773431_+	hypothetical protein	NA	NA	NA	NA
WP_005668395.1\|1773441_1773651_+	hypothetical protein	NA	NA	NA	NA
WP_005668393.1\|1773664_1774186_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	7.3e-29	42.4
WP_013527358.1\|1774424_1775480_+\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	2.2e-56	36.2
WP_005658606.1\|1781860_1783324_-	potassium transporter	NA	NA	NA	NA
WP_080000348.1\|1783326_1783959_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.0e-24	35.5
WP_020910189.1\|1784062_1784302_+	sulfurtransferase TusA	A0A140XB86	Dickeya_phage	1.8e-06	63.9
WP_005633091.1\|1784343_1785195_-\|protease	protease HtpX	NA	NA	NA	NA
WP_005630808.1\|1785362_1785752_-	RidA family protein	NA	NA	NA	NA
1785296:1785316	attR	NA	NA	NA	NA
WP_005687850.1\|1785808_1786561_-	VacJ family lipoprotein	NA	NA	NA	NA
WP_005648601.1\|1786711_1787269_-	transcription termination/antitermination protein NusG	A0A291AUS6	Sinorhizobium_phage	2.6e-08	26.1
WP_005658616.1\|1787270_1787687_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_020910190.1\|1787830_1789066_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.7e-124	55.7
WP_005648605.1\|1789075_1789657_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.8e-59	60.8
WP_006995277.1\|1789779_1791078_-	trigger factor	NA	NA	NA	NA
WP_020910191.1\|1791378_1794642_+	TonB-dependent receptor	NA	NA	NA	NA
WP_020910192.1\|1794695_1795550_-	DUF3298 domain-containing protein	NA	NA	NA	NA
WP_020910193.1\|1795568_1797428_-	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	3.1e-13	27.3
WP_020910194.1\|1797424_1798810_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017451

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection