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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014638 Bifidobacterium bifidum PRL2010, complete sequence 4 crisprs cas3,WYL,DEDDh,csa3 0 2 2 0

Results visualization

1. NC_014638
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014638_1 1298481-1298566 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014638_2 1389595-1389730 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014638_3 1805696-1805801 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014638_4 2188970-2189056 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP015738 Shinella sp. HZN7 plasmid pShin-02, complete sequence 15572-15597 2 0.923
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 957076-957101 3 0.885
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1217403-1217428 3 0.885
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 CP042595 Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence 4592-4617 3 0.885
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 595671-595696 3 0.885
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP020951 Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence 209515-209540 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP045345 Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence 55651-55676 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP045329 Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence 349945-349970 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP045335 Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence 102125-102150 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_008242 Chelativorans sp. BNC1 plasmid 1, complete sequence 44780-44805 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP019586 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence 564931-564956 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 1799395-1799420 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 238706-238731 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 1439785-1439810 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 1201501-1201526 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 1165792-1165817 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 146530-146555 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 751443-751468 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 1185712-1185737 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1543854-1543879 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 1370260-1370285 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 1098316-1098341 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 309609-309634 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 1353457-1353482 4 0.846
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP014277 Martelella sp. AD-3 plasmid unnamed2, complete sequence 160749-160774 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021028 Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence 142910-142935 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP013503 Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence 139062-139087 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP013509 Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence 139062-139087 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP013520 Rhizobium sp. N113 plasmid pRspN113c, complete sequence 139062-139087 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP013493 Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence 139062-139087 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP013516 Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence 139523-139548 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 583880-583905 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 MN234219 Mycobacterium phage Mercurio, complete genome 5178-5203 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 132140-132165 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 75865-75890 5 0.808
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 718251-718276 6 0.769
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NZ_CP032696 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence 530512-530537 6 0.769
NC_014638_2 2.2|1389683|26|NC_014638|PILER-CR 1389683-1389708 26 NC_011892 Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence 331081-331106 6 0.769
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP010644 Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence 3058-3089 8 0.75
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP021033 Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence 202233-202264 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NC_007763 Rhizobium etli CFN 42 plasmid p42b, complete sequence 63020-63051 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP021025 Rhizobium sp. TAL182 plasmid pRetTAL182a, complete sequence 59993-60024 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP020907 Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence 62994-63025 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013600 Rhizobium sp. N741 plasmid pRspN741e, complete sequence 171992-172023 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NC_021906 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence 63031-63062 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013504 Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence 171992-172023 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013510 Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence 170433-170464 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013521 Rhizobium sp. N113 plasmid pRspN113d, complete sequence 174680-174711 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 481554-481585 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013494 Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence 168798-168829 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013512 Rhizobium sp. N1314 plasmid pRspN1314a, complete sequence 59992-60023 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP013594 Rhizobium sp. N871 plasmid pRspN871d, complete sequence 171992-172023 9 0.719
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP010589 Phaeobacter gallaeciensis strain P11 plasmid pP11_a, complete sequence 3038-3069 10 0.688
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP021041 Phaeobacter gallaeciensis strain P129 plasmid pP129_a, complete sequence 3038-3069 10 0.688
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP010674 Phaeobacter gallaeciensis strain P75 plasmid pP75_a, complete sequence 3038-3069 10 0.688
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NC_023138 Phaeobacter gallaeciensis DSM 26640 plasmid pGal_A255, complete sequence 3110-3141 10 0.688
NC_014638_2 2.1|1389623|32|NC_014638|PILER-CR 1389623-1389654 32 NZ_CP010637 Phaeobacter gallaeciensis strain P73 plasmid pP73_a, complete sequence 3038-3069 10 0.688

1. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 2, identity: 0.923

-cgcttcgccttcgccggcttccgcgg	CRISPR spacer
acgc-tcgccgtcgccggcttccgcgg	Protospacer
 *** ***** ****************

2. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 3, identity: 0.885

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgccttcgccggcgtcggcgt	Protospacer
****************** ** *** 

3. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.885

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgcccgctgccgcgg	Protospacer
* ************* *** ******

4. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 3, identity: 0.885

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgccttccacggcttccgctg	Protospacer
************  ********** *

5. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.885

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgcccgctgccgcgg	Protospacer
* ************* *** ******

6. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgccttcgccggcttcgatcg	Protospacer
********************* .. *

7. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgccggcttccctga	Protospacer
* ******************** .*.

8. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgccggcttccctga	Protospacer
* ******************** .*.

9. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgccggcttccctga	Protospacer
* ******************** .*.

10. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgccttcgccggcgtcgtcga	Protospacer
****************** **  **.

11. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

12. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

13. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

14. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

15. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

16. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

17. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ctcttcgccttcgccgatttccgcgt	Protospacer
* **************..******* 

18. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

19. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

20. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

21. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

22. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

23. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

24. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.846

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cgcttcgcctgcgccggcttctgggc	Protospacer
********** **********.* * 

25. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP014277 (Martelella sp. AD-3 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
gtgatcgccttcgccggcttcctcgg	Protospacer
    ****************** ***

26. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

27. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

28. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

29. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

30. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

31. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccatcgccggcttcggcgc	Protospacer
  ******* *********** *** 

32. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
atcttcgccttcgccgtcttcggcgc	Protospacer
  ************** **** *** 

33. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to MN234219 (Mycobacterium phage Mercurio, complete genome) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
tgcttcgccgtcgccgacttccgctc	Protospacer
.******** ******.*******  

34. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
cagggcgccttcgccggctaccgcgg	Protospacer
*.   ************** ******

35. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 5, identity: 0.808

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
ttcttcgccctcgccggcgtccgcgc	Protospacer
. *******.******** ****** 

36. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.769

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
gtgttcgctttcgccggcttccgcac	Protospacer
   *****.***************. 

37. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 6, identity: 0.769

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
gtgttcgccttcgccgacttccgcaa	Protospacer
   *************.*******..

38. spacer 2.2|1389683|26|NC_014638|PILER-CR matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 6, identity: 0.769

cgcttcgccttcgccggcttccgcgg	CRISPR spacer
gagatcgacttcgccggcttccgcgc	Protospacer
 .  *** ***************** 

39. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
cagccggaactgctcatccccggtttcctcat	Protospacer
  **. *.********** ****.******* 

40. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

41. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NC_007763 (Rhizobium etli CFN 42 plasmid p42b, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

42. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP021025 (Rhizobium sp. TAL182 plasmid pRetTAL182a, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

43. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP020907 (Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

44. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

45. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NC_021906 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

46. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

47. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

48. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

49. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ctgctgggactgctcagcaccggcaccaccgc	Protospacer
 **** ********** ******* .* .*. 

50. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

51. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013512 (Rhizobium sp. N1314 plasmid pRspN1314a, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

52. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
ccggtatgactgctcatcaccagctttctcgc	Protospacer
 .* *  **************.****.***. 

53. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP010589 (Phaeobacter gallaeciensis strain P11 plasmid pP11_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
caggcgatactgctcatccccggtttcctcat	Protospacer
  * . . ********** ****.******* 

54. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP021041 (Phaeobacter gallaeciensis strain P129 plasmid pP129_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
caggcgatactgctcatccccggtttcctcat	Protospacer
  * . . ********** ****.******* 

55. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP010674 (Phaeobacter gallaeciensis strain P75 plasmid pP75_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
caggcgatactgctcatccccggtttcctcat	Protospacer
  * . . ********** ****.******* 

56. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NC_023138 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_A255, complete sequence) position: , mismatch: 10, identity: 0.688

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
caggcgatactgctcatccccggtttcctcat	Protospacer
  * . . ********** ****.******* 

57. spacer 2.1|1389623|32|NC_014638|PILER-CR matches to NZ_CP010637 (Phaeobacter gallaeciensis strain P73 plasmid pP73_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtgcttggactgctcatcaccggcttcctcag	CRISPR spacer
caggcgatactgctcatccccggtttcctcat	Protospacer
  * . . ********** ****.******* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22225 : 108820 60 Enterobacteria_phage(26.67%) transposase,protease,integrase,tRNA attL 13890:13912|attR 24267:24289
DBSCAN-SWA_2 1068590 : 1110983 60 Bifidobacterium_phage(100.0%) capsid,tRNA,terminase,portal,integrase,holin,tail attL 1068643:1068659|attR 1105715:1105731
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage