CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014652	Caldicellulosiruptor hydrothermalis 108, complete sequence	6 crisprs	cas14k,cas14j,csa3,DEDDh,cas3,cas2,cas6,cas4,cas1,cas5,cas7,cas7b,cas8b1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,cmr1gr7,csx20,WYL	1	13	4	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014652_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_1

2613496-2618702

Unclear

I-A

Consensus_repeat	Method
GTTTACATCCCTAATAGTTCAGATAAAAC	PILER-CR
GTTTACATCCCTAATAGTTCAGATAAAAC	CRISPRCasFinder
GTTTACATCCCTAATAGTTCAGATAAAAC	CRT

79 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas6

The CRISPR arrays of NC_014652_1

>merge|NC_014652|1|2613496-2618702|PILER-CR,CRISPRCasFinder,CRT
GTTTACATCCCTAATAGTTCAGATAAAACGTATCAGGATACATTCGAACAAGAATTGTTGATATTGAGTTTACATCCCTAATAGTTCAGATAAAACCGCCTGCACTTCTTGTTATTCCTATCATCGCTATCTGGTTTACATCCCTAATAGTTCAGTTAAAACTGGGCCTGCTTCACGTTGTTGATAGCATTGTTAACCACGTTTACATCCCTAATAGTTCAGATAAAACAGAATTAAAAAGTATGTCTTTTAAAAACTCTTCTCTCGTTTACATCCCTAATAGTTCAGATAAAACAAGTCCTGCACTTCTCATATTCTCATGGGGTAGCGGTGTTTACATCCCTAATAGTTCAGATAAAACCTGTGATGAGTCAGCAGGGTCTCTTATAACTTTAGTGTTTACATCCCTAATAGTTCAGATAAAACACAAAACTAAATTACCATTGACTTCTCCCCGCCCTAAGTTTACATCCCTAATAGTTCAGATAAAACAGTAAGGCAAGACTCGTAGAAGATTTGAGAATGTGGTTTACATCCCTAATAGTTCAGATAAAACGCAATATATCGTCGCCTTCATAGACTTCCTGTATACGTTTACATCCCTAATAGTTCAGATAAAACTTTCAACAAGATTAAATATTTTGCAAACTTAATTGAGTTTACATCCCTAATAGTTCAGATAAAACATTGTTAATGTCAGTAGCCACTAATTCCACAACACCAGTTTACATCCCTAATAGTTCAGATAAAACCTTTCTTAAGGAGTGATAATTTTGTTAATTGCTTTTGAGTTTACATCCCTAATAGTTCAGATAAAACTGGGCCAGAAGATATTAAATCTACAGAAAGCTAAAGGTTTACATCCCTAATAGTTCAGATAAAACAAAATTCTCGCCAGAAAACATGCCAAAACTCAAATACGTTTACATCCCTAATAGTTCAGATAAAACTCTAATCTCAATTTTTTCCATTTCTTGTTTTTCTTGTTTACATCCCTAATAGTTCAGATAAAACACCAAAAATCCTTTCTTTAAAGTTGCAACAATATTATCGTTTACATCCCTAATAGTTCAGATAAAACTTCAACCTTCCAACCGATTGTTGAGTATTGATTCAAGTTTACATCCCTAATAGTTCAGATAAAACCGGTGAAGTATTGTCGCTTTGGTGCTGGAAGAAGGTTTACATCCCTAATAGTTCAGATAAAACAAAACAGAGTCTTGAAGATTTAGAGAAGCGATACGAGTTTACATCCCTAATAGTTCAGATAAAACTCTTCTCCCAAGACAACGTACGGCATAACTGCACCGTGTTTACATCCCTAATAGTTCAGATAAAACAAAAGTCAAGTTGCTAACACTTAATAAATACACATCTGTTTACATCCCTAATAGTTCAGATAAAACTCAACGTCATCAATCAAAAAGTTGAATGCTTTTGCTGTTTACATCCCTAATAGTTCAGATAAAACTCTTGTCAATACCACCCTAATTGTTAACAAATTATGAGTTTACATCCCTAATAGTTCAGATAAAACGCAGCTGGGAATGATATGTGTTGTAGACGAGATAAATGTTTACATCCCTAATAGTTCAGATAAAACTAGCTGTTGGACCTGCGTGCCAGGCCCTTTCGTTCCAGTTTACATCCCTAATAGTTCAGATAAAACAAATTATTGATGGTTGGAAAAATAAGTTTTTTGATAGGTTTACATCCCTAATAGTTCAGATAAAACACTACAACGACTTTTACTGTGACAGTTGATACAGCTGTTTACATCCCTAATAGTTCAGATAAAACTGTTTGGAATGCGATTAAGAACGTCTTTCTGACAATCGTTTACATCCCTAATAGTTCAGATAAAACGAGATAGTGAGGGAAAAGACAAGCGGATTTGCAGCAGTTTACATCCCTAATAGTTCAGATAAAACAGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTATGTTTACATCCCTAATAGTTCAGATAAAACAGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTATGTTTACATCCCTAATAGTTCAGATAAAACTCTCTCATCAAGCTCTGCTATCCATTCCCAATCCCTGTTTACATCCCTAATAGTTCAGATAAAACGATGGAGCAGGAAATACTTAAGTTTGTTACGACGCAGTTTACATCCCTAATAGTTCAGATAAAACGATGAGTGAGAAAAACTTCTTTGAAGAACTTTTAGCTGGTTTACATCCCTAATAGTTCAGATAAAACCTCCAATACTTTTAAGTTTGCTTAGCGTTATGCTTGCGTTTACATCCCTAATAGTTCAGATAAAACACAAAAGCAAGTATGCTAACTGCACGATATCTTTTGTTTACATCCCTAATAGTTCAGATAAAACAGCGCTGTTGCTAATGCGACCAATGCAGATACACTTGAGTTTACATCCCTAATAGTTCAGATAAAACTCTATGATTTTTTTAGCTATTTCCTCTTTCTTTTGTGTTTACATCCCTAATAGTTCAGATAAAACTTCACCTGTTTCCAAGTAACAAAAGAATGTAATATAGTTTACATCCCTAATAGTTCAGATAAAACCCCGTCTATCATCATCGAGCATCAGCTCCTAATCGCGTTTACATCCCTAATAGTTCAGATAAAACAATGCCTCACCTACTTCGTTGAGGTCCTTTAAACACGTTTACATCCCTAATAGTTCAGATAAAACTTTTGAGTTTGAACATTACGGGCTTTAAAGACAGGTCGTTTACATCCCTAATAGTTCAGATAAAACCTGGAAGGAAATGGGCTTATCACCAGCAGATATGCACGTTTACATCCCTAATAGTTCAGATAAAACACAGGCTGAATATGGAGGACAAGCATAATGGAGAATTGTTTACATCCCTAATAGTTCAGATAAAACTGGCAACTTTTAGTGAAAGGCTAAAGAAATTGAGAGTTTACATCCCTAATAGTTCAGATAAAACAATCAGGCAGGACGCAGAAGAACTTAAGAAACTGCTGTTTACATCCCTAATAGTTCAGATAAAACATTTCTTCTGGCTTAAAGGTTACTATTACCCCACCAAGTTTACATCCCTAATAGTTCAGATAAAACACAAGTGGTTTTAAACTTGAACGAGCAGGTGGCTTTGGTTTACATCCCTAATAGTTCAGATAAAACACTGTTTATTTTTGTTTGCAAGCTGTTTTTTTGCTTTTCAGTTTACATCCCTAATAGTTCAGATAAAACTCTGTTGCATAATCTCCAGTCAGCAACAAGTCAATAATGTTTACATCCCTAATAGTTCAGATAAAACCGAAGCAATAGCTTAGCAATACAAAGCACAGCATAGGTTTACATCCCTAATAGTTCAGATAAAACTATTACCACCTTTACCGTCCCCGGTCCGTTCCAGAGGTTTACATCCCTAATAGTTCAGATAAAACACTCATCTTTTGTCAGTCTTGGCACATCTTGAACTTCGTTTACATCCCTAATAGTTCAGATAAAACTTCGAGAAGAGCTCCAAGAACTAGAAGAAGCTGAGAGTTTACATCCCTAATAGTTCAGATAAAACAAACAAGAGCTGATGATTTAGCAACGATGATTGTAGGTTTACATCCCTAATAGTTCAGATAAAACCCAGTTATAGGCATTCCTTTGCTAATCATTAAATACGTTTACATCCCTAATAGTTCAGATAAAACCAAGCACCAGAACAACAACAGTTTATGCTTGAAGAGTTTACATCCCTAATAGTTCAGATAAAACTGTTCAAAAGAATCAATAGCAAATTCGCTTCTTAAGAGTTTACATCCCTAATAGTTCAGATAAAACGTATGTGCTGTAGTTATCACAATATCACTTTTTGTGGTTTACATCCCTAATAGTTCAGATAAAACACTCATATCCTAAGAACTCTTCATAAGCAATTCCATTGTTTACATCCCTAATAGTTCAGATAAAACGAATGCATTCTCTGCAACATTCTGAGACATGTCCCGTTTACATCCCTAATAGTTCAGATAAAACATTAAAGAAAGTGTTTAACACGACAATATAATAATTGTTTACATCCCTAATAGTTCAGATAAAACCTTGATGTAAACAAAGTATTAGTAGTCTTTAAAGAGTTTACATCCCTAATAGTTCAGATAAAACCATATAAAAGCCCATAGACAATCAATTTTATGCTTAAGTTTACATCCCTAATAGTTCAGATAAAACAGAATAAGTCCAATTCAAATCCAAACTCTATGAAGCGTTTACATCCCTAATAGTTCAGATAAAACAGAATAAGTCCAATTCAAATCCAAACTCTATGAAGCGTTTACATCCCTAATAGTTCAGATAAAACAGTATTTTCTTGTTGCAATGTAAGTATCATCATAAGCGTTTACATCCCTAATAGTTCAGATAAAACCATCGTGTATTCTCTCTAACTGATGCAGTTTTAATGCGTTTACATCCCTAATAGTTCAGATAAAACTTAATCATTGATGATTTAGGAGCTGAAAATGAGACGTTTACATCCCTAATAGTTCAGATAAAACTTCTACCGCTCTTCTTCCTTTGCGATAAACAACCCAGTTTACATCCCTAATAGTTCAGATAAAACAAGCAGAAAGAGCACAAGGTTAAGCGAATAGTGGACAGTTTACATCCCTAATAGTTCAGATAAAACTTAAAAAGCTTTTAGGCTTGCAAGCCAACAACAAAATGTTTACATCCCTAATAGTTCAGATAAAACTTCTGAAGCTGAATCAAAAATTGGGCAAGCACAATAAGTTTACATCCCTAATAGTTCAGATAAAACAGTATCAGATTGGCAAGAAAATACCCAGACTTTGGACGTTTACATCCCTAATAGTTCAGATAAAACCAACAGCAGATAGGCAGACTTTTATCGTGCTTTGCAGTTTACATCCCTAATAGTTCAGATAAAACCATTGCCTGACTGTAAGCATTAATCACAGCTGCTATGTTTACATCCCTAATAGTTCAGATAAAACCTTTCTAAAACTTTACCAAACTTCTTGCTAACATACTCGTTTACATCCCTAATAGTTCAGATAAAACTAGCATTTAAGCAAAGCTATGTTTCGTATGCACAGATGTTTACATCCCTAATAGTTCAGATAAAACAAGAAATCAATCAACGTTACCATAAACGTTGAGAAAAGTTTACATCCCTAATAGTTCAGATAAAAC

>NC_014652|1|1|2613496-2618702|PILER-CR
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATCAGGATACATTCGAACAAGAATTGTTGATATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGCCTGCACTTCTTGTTATTCCTATCATCGCTATCTG
GTTTACATCCCTAATAGTTCAGTTAAAAC	TGGGCCTGCTTCACGTTGTTGATAGCATTGTTAACCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATTAAAAAGTATGTCTTTTAAAAACTCTTCTCTC
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGTCCTGCACTTCTCATATTCTCATGGGGTAGCGGT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGTGATGAGTCAGCAGGGTCTCTTATAACTTTAGT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAACTAAATTACCATTGACTTCTCCCCGCCCTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTAAGGCAAGACTCGTAGAAGATTTGAGAATGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAATATATCGTCGCCTTCATAGACTTCCTGTATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTCAACAAGATTAAATATTTTGCAAACTTAATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTGTTAATGTCAGTAGCCACTAATTCCACAACACCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTTAAGGAGTGATAATTTTGTTAATTGCTTTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGGCCAGAAGATATTAAATCTACAGAAAGCTAAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAATTCTCGCCAGAAAACATGCCAAAACTCAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTAATCTCAATTTTTTCCATTTCTTGTTTTTCTT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACCAAAAATCCTTTCTTTAAAGTTGCAACAATATTATC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCAACCTTCCAACCGATTGTTGAGTATTGATTCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGGTGAAGTATTGTCGCTTTGGTGCTGGAAGAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAACAGAGTCTTGAAGATTTAGAGAAGCGATACGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTCTCCCAAGACAACGTACGGCATAACTGCACCGT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAAGTCAAGTTGCTAACACTTAATAAATACACATCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCAACGTCATCAATCAAAAAGTTGAATGCTTTTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTGTCAATACCACCCTAATTGTTAACAAATTATGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAGCTGGGAATGATATGTGTTGTAGACGAGATAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCTGTTGGACCTGCGTGCCAGGCCCTTTCGTTCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAATTATTGATGGTTGGAAAAATAAGTTTTTTGATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTACAACGACTTTTACTGTGACAGTTGATACAGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTTGGAATGCGATTAAGAACGTCTTTCTGACAATC
GTTTACATCCCTAATAGTTCAGATAAAAC	GAGATAGTGAGGGAAAAGACAAGCGGATTTGCAGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTCTCATCAAGCTCTGCTATCCATTCCCAATCCCT
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGGAGCAGGAAATACTTAAGTTTGTTACGACGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGAGTGAGAAAAACTTCTTTGAAGAACTTTTAGCTG
GTTTACATCCCTAATAGTTCAGATAAAAC	CTCCAATACTTTTAAGTTTGCTTAGCGTTATGCTTGC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAAGCAAGTATGCTAACTGCACGATATCTTTT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCGCTGTTGCTAATGCGACCAATGCAGATACACTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTATGATTTTTTTAGCTATTTCCTCTTTCTTTTGT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCACCTGTTTCCAAGTAACAAAAGAATGTAATATA
GTTTACATCCCTAATAGTTCAGATAAAAC	CCCGTCTATCATCATCGAGCATCAGCTCCTAATCGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AATGCCTCACCTACTTCGTTGAGGTCCTTTAAACAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTTGAGTTTGAACATTACGGGCTTTAAAGACAGGTC
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGGAAGGAAATGGGCTTATCACCAGCAGATATGCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAGGCTGAATATGGAGGACAAGCATAATGGAGAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGCAACTTTTAGTGAAAGGCTAAAGAAATTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AATCAGGCAGGACGCAGAAGAACTTAAGAAACTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTTCTTCTGGCTTAAAGGTTACTATTACCCCACCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAGTGGTTTTAAACTTGAACGAGCAGGTGGCTTTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTGTTTATTTTTGTTTGCAAGCTGTTTTTTTGCTTTTCA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTGTTGCATAATCTCCAGTCAGCAACAAGTCAATAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CGAAGCAATAGCTTAGCAATACAAAGCACAGCATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	TATTACCACCTTTACCGTCCCCGGTCCGTTCCAGAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATCTTTTGTCAGTCTTGGCACATCTTGAACTTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCGAGAAGAGCTCCAAGAACTAGAAGAAGCTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAACAAGAGCTGATGATTTAGCAACGATGATTGTAG
GTTTACATCCCTAATAGTTCAGATAAAAC	CCAGTTATAGGCATTCCTTTGCTAATCATTAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAAGCACCAGAACAACAACAGTTTATGCTTGAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTCAAAAGAATCAATAGCAAATTCGCTTCTTAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATGTGCTGTAGTTATCACAATATCACTTTTTGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATATCCTAAGAACTCTTCATAAGCAATTCCATT
GTTTACATCCCTAATAGTTCAGATAAAAC	GAATGCATTCTCTGCAACATTCTGAGACATGTCCC
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTAAAGAAAGTGTTTAACACGACAATATAATAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTGATGTAAACAAAGTATTAGTAGTCTTTAAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATATAAAAGCCCATAGACAATCAATTTTATGCTTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATTTTCTTGTTGCAATGTAAGTATCATCATAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	CATCGTGTATTCTCTCTAACTGATGCAGTTTTAATGC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAATCATTGATGATTTAGGAGCTGAAAATGAGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTACCGCTCTTCTTCCTTTGCGATAAACAACCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGCAGAAAGAGCACAAGGTTAAGCGAATAGTGGACA
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAAAAAGCTTTTAGGCTTGCAAGCCAACAACAAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTGAAGCTGAATCAAAAATTGGGCAAGCACAATAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATCAGATTGGCAAGAAAATACCCAGACTTTGGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAACAGCAGATAGGCAGACTTTTATCGTGCTTTGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATTGCCTGACTGTAAGCATTAATCACAGCTGCTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTAAAACTTTACCAAACTTCTTGCTAACATACTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCATTTAAGCAAAGCTATGTTTCGTATGCACAGAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGAAATCAATCAACGTTACCATAAACGTTGAGAAAA
GTTTACATCCCTAATAGTTCAGATAAAAC

>NC_014652|1|1|2613496-2618702|CRISPRCasFinder
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATCAGGATACATTCGAACAAGAATTGTTGATATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGCCTGCACTTCTTGTTATTCCTATCATCGCTATCTG
GTTTACATCCCTAATAGTTCAGTTAAAAC	TGGGCCTGCTTCACGTTGTTGATAGCATTGTTAACCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATTAAAAAGTATGTCTTTTAAAAACTCTTCTCTC
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGTCCTGCACTTCTCATATTCTCATGGGGTAGCGGT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGTGATGAGTCAGCAGGGTCTCTTATAACTTTAGT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAACTAAATTACCATTGACTTCTCCCCGCCCTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTAAGGCAAGACTCGTAGAAGATTTGAGAATGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAATATATCGTCGCCTTCATAGACTTCCTGTATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTCAACAAGATTAAATATTTTGCAAACTTAATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTGTTAATGTCAGTAGCCACTAATTCCACAACACCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTTAAGGAGTGATAATTTTGTTAATTGCTTTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGGCCAGAAGATATTAAATCTACAGAAAGCTAAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAATTCTCGCCAGAAAACATGCCAAAACTCAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTAATCTCAATTTTTTCCATTTCTTGTTTTTCTT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACCAAAAATCCTTTCTTTAAAGTTGCAACAATATTATC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCAACCTTCCAACCGATTGTTGAGTATTGATTCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGGTGAAGTATTGTCGCTTTGGTGCTGGAAGAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAACAGAGTCTTGAAGATTTAGAGAAGCGATACGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTCTCCCAAGACAACGTACGGCATAACTGCACCGT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAAGTCAAGTTGCTAACACTTAATAAATACACATCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCAACGTCATCAATCAAAAAGTTGAATGCTTTTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTGTCAATACCACCCTAATTGTTAACAAATTATGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAGCTGGGAATGATATGTGTTGTAGACGAGATAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCTGTTGGACCTGCGTGCCAGGCCCTTTCGTTCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAATTATTGATGGTTGGAAAAATAAGTTTTTTGATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTACAACGACTTTTACTGTGACAGTTGATACAGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTTGGAATGCGATTAAGAACGTCTTTCTGACAATC
GTTTACATCCCTAATAGTTCAGATAAAAC	GAGATAGTGAGGGAAAAGACAAGCGGATTTGCAGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTCTCATCAAGCTCTGCTATCCATTCCCAATCCCT
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGGAGCAGGAAATACTTAAGTTTGTTACGACGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGAGTGAGAAAAACTTCTTTGAAGAACTTTTAGCTG
GTTTACATCCCTAATAGTTCAGATAAAAC	CTCCAATACTTTTAAGTTTGCTTAGCGTTATGCTTGC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAAGCAAGTATGCTAACTGCACGATATCTTTT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCGCTGTTGCTAATGCGACCAATGCAGATACACTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTATGATTTTTTTAGCTATTTCCTCTTTCTTTTGT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCACCTGTTTCCAAGTAACAAAAGAATGTAATATA
GTTTACATCCCTAATAGTTCAGATAAAAC	CCCGTCTATCATCATCGAGCATCAGCTCCTAATCGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AATGCCTCACCTACTTCGTTGAGGTCCTTTAAACAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTTGAGTTTGAACATTACGGGCTTTAAAGACAGGTC
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGGAAGGAAATGGGCTTATCACCAGCAGATATGCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAGGCTGAATATGGAGGACAAGCATAATGGAGAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGCAACTTTTAGTGAAAGGCTAAAGAAATTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AATCAGGCAGGACGCAGAAGAACTTAAGAAACTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTTCTTCTGGCTTAAAGGTTACTATTACCCCACCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAGTGGTTTTAAACTTGAACGAGCAGGTGGCTTTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTGTTTATTTTTGTTTGCAAGCTGTTTTTTTGCTTTTCA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTGTTGCATAATCTCCAGTCAGCAACAAGTCAATAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CGAAGCAATAGCTTAGCAATACAAAGCACAGCATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	TATTACCACCTTTACCGTCCCCGGTCCGTTCCAGAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATCTTTTGTCAGTCTTGGCACATCTTGAACTTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCGAGAAGAGCTCCAAGAACTAGAAGAAGCTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAACAAGAGCTGATGATTTAGCAACGATGATTGTAG
GTTTACATCCCTAATAGTTCAGATAAAAC	CCAGTTATAGGCATTCCTTTGCTAATCATTAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAAGCACCAGAACAACAACAGTTTATGCTTGAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTCAAAAGAATCAATAGCAAATTCGCTTCTTAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATGTGCTGTAGTTATCACAATATCACTTTTTGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATATCCTAAGAACTCTTCATAAGCAATTCCATT
GTTTACATCCCTAATAGTTCAGATAAAAC	GAATGCATTCTCTGCAACATTCTGAGACATGTCCC
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTAAAGAAAGTGTTTAACACGACAATATAATAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTGATGTAAACAAAGTATTAGTAGTCTTTAAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATATAAAAGCCCATAGACAATCAATTTTATGCTTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATTTTCTTGTTGCAATGTAAGTATCATCATAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	CATCGTGTATTCTCTCTAACTGATGCAGTTTTAATGC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAATCATTGATGATTTAGGAGCTGAAAATGAGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTACCGCTCTTCTTCCTTTGCGATAAACAACCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGCAGAAAGAGCACAAGGTTAAGCGAATAGTGGACA
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAAAAAGCTTTTAGGCTTGCAAGCCAACAACAAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTGAAGCTGAATCAAAAATTGGGCAAGCACAATAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATCAGATTGGCAAGAAAATACCCAGACTTTGGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAACAGCAGATAGGCAGACTTTTATCGTGCTTTGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATTGCCTGACTGTAAGCATTAATCACAGCTGCTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTAAAACTTTACCAAACTTCTTGCTAACATACTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCATTTAAGCAAAGCTATGTTTCGTATGCACAGAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGAAATCAATCAACGTTACCATAAACGTTGAGAAAA
GTTTACATCCCTAATAGTTCAGATAAAAC

>NC_014652|1|1|2613496-2618702|CRT
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATCAGGATACATTCGAACAAGAATTGTTGATATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGCCTGCACTTCTTGTTATTCCTATCATCGCTATCTG
GTTTACATCCCTAATAGTTCAGTTAAAAC	TGGGCCTGCTTCACGTTGTTGATAGCATTGTTAACCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATTAAAAAGTATGTCTTTTAAAAACTCTTCTCTC
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGTCCTGCACTTCTCATATTCTCATGGGGTAGCGGT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGTGATGAGTCAGCAGGGTCTCTTATAACTTTAGT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAACTAAATTACCATTGACTTCTCCCCGCCCTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTAAGGCAAGACTCGTAGAAGATTTGAGAATGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAATATATCGTCGCCTTCATAGACTTCCTGTATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTCAACAAGATTAAATATTTTGCAAACTTAATTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTGTTAATGTCAGTAGCCACTAATTCCACAACACCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTTAAGGAGTGATAATTTTGTTAATTGCTTTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGGCCAGAAGATATTAAATCTACAGAAAGCTAAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAATTCTCGCCAGAAAACATGCCAAAACTCAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTAATCTCAATTTTTTCCATTTCTTGTTTTTCTT
GTTTACATCCCTAATAGTTCAGATAAAAC	ACCAAAAATCCTTTCTTTAAAGTTGCAACAATATTATC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCAACCTTCCAACCGATTGTTGAGTATTGATTCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	CGGTGAAGTATTGTCGCTTTGGTGCTGGAAGAAG
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAACAGAGTCTTGAAGATTTAGAGAAGCGATACGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTCTCCCAAGACAACGTACGGCATAACTGCACCGT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAAAGTCAAGTTGCTAACACTTAATAAATACACATCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCAACGTCATCAATCAAAAAGTTGAATGCTTTTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTTGTCAATACCACCCTAATTGTTAACAAATTATGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GCAGCTGGGAATGATATGTGTTGTAGACGAGATAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCTGTTGGACCTGCGTGCCAGGCCCTTTCGTTCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAATTATTGATGGTTGGAAAAATAAGTTTTTTGATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTACAACGACTTTTACTGTGACAGTTGATACAGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTTGGAATGCGATTAAGAACGTCTTTCTGACAATC
GTTTACATCCCTAATAGTTCAGATAAAAC	GAGATAGTGAGGGAAAAGACAAGCGGATTTGCAGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTCTCATCAAGCTCTGCTATCCATTCCCAATCCCT
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGGAGCAGGAAATACTTAAGTTTGTTACGACGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	GATGAGTGAGAAAAACTTCTTTGAAGAACTTTTAGCTG
GTTTACATCCCTAATAGTTCAGATAAAAC	CTCCAATACTTTTAAGTTTGCTTAGCGTTATGCTTGC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAAAGCAAGTATGCTAACTGCACGATATCTTTT
GTTTACATCCCTAATAGTTCAGATAAAAC	AGCGCTGTTGCTAATGCGACCAATGCAGATACACTTGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTATGATTTTTTTAGCTATTTCCTCTTTCTTTTGT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCACCTGTTTCCAAGTAACAAAAGAATGTAATATA
GTTTACATCCCTAATAGTTCAGATAAAAC	CCCGTCTATCATCATCGAGCATCAGCTCCTAATCGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AATGCCTCACCTACTTCGTTGAGGTCCTTTAAACAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTTTGAGTTTGAACATTACGGGCTTTAAAGACAGGTC
GTTTACATCCCTAATAGTTCAGATAAAAC	CTGGAAGGAAATGGGCTTATCACCAGCAGATATGCAC
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAGGCTGAATATGGAGGACAAGCATAATGGAGAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	TGGCAACTTTTAGTGAAAGGCTAAAGAAATTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AATCAGGCAGGACGCAGAAGAACTTAAGAAACTGCT
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTTCTTCTGGCTTAAAGGTTACTATTACCCCACCAA
GTTTACATCCCTAATAGTTCAGATAAAAC	ACAAGTGGTTTTAAACTTGAACGAGCAGGTGGCTTTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTGTTTATTTTTGTTTGCAAGCTGTTTTTTTGCTTTTCA
GTTTACATCCCTAATAGTTCAGATAAAAC	TCTGTTGCATAATCTCCAGTCAGCAACAAGTCAATAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CGAAGCAATAGCTTAGCAATACAAAGCACAGCATAG
GTTTACATCCCTAATAGTTCAGATAAAAC	TATTACCACCTTTACCGTCCCCGGTCCGTTCCAGAG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATCTTTTGTCAGTCTTGGCACATCTTGAACTTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCGAGAAGAGCTCCAAGAACTAGAAGAAGCTGAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAACAAGAGCTGATGATTTAGCAACGATGATTGTAG
GTTTACATCCCTAATAGTTCAGATAAAAC	CCAGTTATAGGCATTCCTTTGCTAATCATTAAATAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAAGCACCAGAACAACAACAGTTTATGCTTGAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	TGTTCAAAAGAATCAATAGCAAATTCGCTTCTTAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	GTATGTGCTGTAGTTATCACAATATCACTTTTTGTG
GTTTACATCCCTAATAGTTCAGATAAAAC	ACTCATATCCTAAGAACTCTTCATAAGCAATTCCATT
GTTTACATCCCTAATAGTTCAGATAAAAC	GAATGCATTCTCTGCAACATTCTGAGACATGTCCC
GTTTACATCCCTAATAGTTCAGATAAAAC	ATTAAAGAAAGTGTTTAACACGACAATATAATAATT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTGATGTAAACAAAGTATTAGTAGTCTTTAAAGA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATATAAAAGCCCATAGACAATCAATTTTATGCTTAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATTTTCTTGTTGCAATGTAAGTATCATCATAAGC
GTTTACATCCCTAATAGTTCAGATAAAAC	CATCGTGTATTCTCTCTAACTGATGCAGTTTTAATGC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAATCATTGATGATTTAGGAGCTGAAAATGAGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTACCGCTCTTCTTCCTTTGCGATAAACAACCCA
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGCAGAAAGAGCACAAGGTTAAGCGAATAGTGGACA
GTTTACATCCCTAATAGTTCAGATAAAAC	TTAAAAAGCTTTTAGGCTTGCAAGCCAACAACAAAAT
GTTTACATCCCTAATAGTTCAGATAAAAC	TTCTGAAGCTGAATCAAAAATTGGGCAAGCACAATAA
GTTTACATCCCTAATAGTTCAGATAAAAC	AGTATCAGATTGGCAAGAAAATACCCAGACTTTGGAC
GTTTACATCCCTAATAGTTCAGATAAAAC	CAACAGCAGATAGGCAGACTTTTATCGTGCTTTGCA
GTTTACATCCCTAATAGTTCAGATAAAAC	CATTGCCTGACTGTAAGCATTAATCACAGCTGCTAT
GTTTACATCCCTAATAGTTCAGATAAAAC	CTTTCTAAAACTTTACCAAACTTCTTGCTAACATACTC
GTTTACATCCCTAATAGTTCAGATAAAAC	TAGCATTTAAGCAAAGCTATGTTTCGTATGCACAGAT
GTTTACATCCCTAATAGTTCAGATAAAAC	AAGAAATCAATCAACGTTACCATAAACGTTGAGAAAA
GTTTACATCCCTAATAGTTCAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404319.1\|2608228_2611402_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404313.1\|2598889_2599837_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
NC_014652.1\|WP_013404310.1\|2596723_2596984_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NC_014652.1\|WP_013404311.1\|2597063_2598428_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|236740
NC_014652.1\|WP_013404321.1\|2619340_2620321_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_014652.1\|WP_013404325.1\|2623932_2624862_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_014652.1\|WP_013404317.1\|2603730_2605809_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200474
NC_014652.1\|WP_013404320.1\|2618906_2619170_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014652.1\|WP_013404328.1\|2627845_2629174_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404312.1\|2598449_2598899_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NC_014652.1\|WP_013404329.1\|2629260_2630112_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200562
NC_014652.1\|WP_041723223.1\|2602848_2603646_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200589
NC_014652.1\|WP_013404324.1\|2623183_2623930_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_014652.1\|WP_013404322.1\|2620328_2620841_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_014652.1\|WP_013402019.1\|2601222_2602653_-\|ISNCY-like-element-ISCahy1-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_014652.1\|WP_013404330.1\|2630204_2632427_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404318.1\|2606026_2608048_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225177
NC_014652.1\|WP_013404327.1\|2626793_2627579_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_014652.1\|WP_041723222.1\|2599864_2600617_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_014652.1\|WP_013404323.1\|2620860_2623194_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404313.1\|2598889_2599837_-\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.26471e-120
NC_014652.1\|WP_013404310.1\|2596723_2596984_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	2.15252e-33
NC_014652.1\|WP_013404311.1\|2597063_2598428_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	1.81082e-178
NC_014652.1\|WP_013404321.1\|2619340_2620321_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.02644e-168
NC_014652.1\|WP_013404325.1\|2623932_2624862_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.66112e-66
NC_014652.1\|WP_013404317.1\|2603730_2605809_-\|alpha-amylase	gnl\|CDD\|200474	cd11335, AmyAc_MTase_N, Alpha amylase catalytic domain found in maltosyltransferase. Maltosyltransferase (MTase), a maltodextrin glycosyltransferase, acts on starch and maltooligosaccharides. It catalyzes the transfer of maltosyl units from alpha-1,4-linked glucans or maltooligosaccharides to other alpha-1,4-linked glucans, maltooligosaccharides or glucose. MTase is a homodimer. The catalytic core domain has the (beta/alpha) 8 barrel fold with the active-site cleft formed at the C-terminal end of the barrel. Substrate binding experiments have led to the location of two distinct maltose-binding sites: one lies in the active-site cleft and the other is located in a pocket adjacent to the active-site cleft. It is a member of the alpha-amylase family, but unlike typical alpha-amylases, MTase does not require calcium for activity and lacks two histidine residues which are predicted to be critical for binding the glucose residue adjacent to the scissile bond in the substrates. The common reaction chemistry of the alpha-amylase family of enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_014652.1\|WP_013404320.1\|2618906_2619170_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.11206e-27
NC_014652.1\|WP_013404329.1\|2629260_2630112_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|200562	cd10936, CE4_DAC2, Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria. This family contains an uncharacterized protein BH1492 from Bacillus halodurans, an uncharacterized protein ATU2773 from Agrobacterium tumefaciens C58, and other bacterial hypothetical proteins. Although their functions are still unknown, structural superposition and sequence comparison suggest that BH1492 and ATU2773 might be divergently related to the 7-stranded barrel catalytic domain of polysaccharide deacetylases (DACs) from the carbohydrate esterase 4 (CE4) superfamily, which remove N-linked acetyl groups from cell wall polysaccharides. This family is designated as DAC family 2, a divergent DAC family.	8.36614e-60
NC_014652.1\|WP_013404312.1\|2598449_2598899_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	4.7075e-47
NC_014652.1\|WP_041723223.1\|2602848_2603646_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200589	cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins. This family is represented by the extracellular polysaccharide-degrading enzyme, gellan lyase (gellanase, EC 4.2.2.-), from Bacillus sp. The enzyme acts on gellan exolytically and releases a tetrasaccharide of glucuronyl-glucosyl-rhamnosyl-glucose with unsaturated glucuronic acid at the nonreducing terminus. The family also includes many uncharacterized prokaryotic polysaccharide deacetylases, which show high sequence similarity to Bacillus sp. gellan lyase. Although their biological functions remain unknown, all members of the family contain a conserved domain with a 6-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.	1.00032e-61
NC_014652.1\|WP_013404324.1\|2623183_2623930_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	7.89487e-29
NC_014652.1\|WP_013404322.1\|2620328_2620841_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.98579e-62
NC_014652.1\|WP_013402019.1\|2601222_2602653_-\|ISNCY-like-element-ISCahy1-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	0.000120236
NC_014652.1\|WP_013404318.1\|2606026_2608048_-\|hypothetical-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	4.21606e-43
NC_014652.1\|WP_013404327.1\|2626793_2627579_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.18393e-19
NC_014652.1\|WP_041723222.1\|2599864_2600617_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.05198e-98
NC_014652.1\|WP_013404323.1\|2620860_2623194_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	7.12094e-64

>NC_014652.1|WP_013404319.1|2608228_2611402_-|hypothetical-protein
MKRMSIKPKNVISTLIILFLIILLMPLLTWLHKDTKSLNIWIIDKTVPNTDYREHGGLFWLFNFLKIKNPNLNSYNLEKDYFGFVPKKNSSSNYHTKDIDLKTLENQANPEIIYLTDAYGVYDNDLKKESKMDKRSALIYGGVSKDDILYIKSSLKNNVLIGEFNILQSPTPEDISVELQNLFGIEWTKWYGRYYASLQKDLEVPDFIVELYENMYKSKWSFKKAGFVILSESGQIVVLEKGKDFSSKALKLEFVNNYDAYFNAQNDVGFYYWFEIVKPKSAKVLANFKFNLTPTGKRKLESFNLPLVFPAILKHQTSQYTSYYFAGDFADLKPKRVPYQYSIADRLYKMFTFEKSGFQDAFYWKVYVPMMKRIISDIKPNGTKTIANFEPIKLENGISLKTRIQENKFLIFTQNGWREFFIKGVNMGLAQPGKYFTQMPDDPLTYLRWFEMISQMNANTVRLYTLAPPEFYKALKVFNLKNPDKKLYLIQEIWPDEDVPDQNYLNAEYDKAFKKEIENVIDAIHGKAQIPKRTGRAYGSYTADVSMYTIAILIGRELEPDEVISTNTKNKTETYDGEYIKVRGSPTEVWLASACDYALEYETRKYNMQHPVAIVSWPTLDPISHPSEFNEYGKKELEYNDKAEININHFDLGKNNLAGFFGAYHIYPNYPDFMNNEDKYKKYTDEEGRFMYGGYLRELMENHTKFPALVAEFGLATGMGIAHQNPDGYNHGGLDEESQGKGIVRMMKAIKREGYIGGLIFEWMDEWAKKTWITEPFMIPYERHVLWHNRLDPEQNYGILANEASLPKDRFVISEAGKIKSLEISSNAEYLYLKIELDKEFSKTDELLIGIDTYDRKRGEFKLSEKLNLLLPSGVEFLLKITLDESKILAIPSYNISKGRYSSEISFSAKFENIIMQINKERVTQDGRKIPAIYHKFSILPKGKFGDSKYAWYVEKNRIYIRIPWMLLNVSDPSSRTVLDDKRTFKQLSRDILRTTKTDGFVFYCALFEEGKLGDILPGNSNFEVKKYIWQTWENVEYVERLKESYKYIQEFFATIE
>NC_014652.1|WP_013404318.1|2606026_2608048_-|hypothetical-protein
MGVLLEVAGVLISIYILLKLIGLRVIPNDKVGIVEKWWSFKGSLDEQIIALHGEAGFQPEVLRGGIHFRTPLMYKVHIVPLVTIPQGQIGYVFARDGKPLEPTQTLGRVIPECNNFQDVRAFLENGGQRGPQRAILREGTYAFNLAQFIVITEDKIYYLPMGNKEEKEMIEKMVQTLKSRNAFRPIVITEDKVGIVTVHDGPSLPSGDIVAPTVGDDPSDPETYHNNFQDPEKFLKAGGFRGRQLQVLVEGTYFINRLFATVELIDKTVIEVGYVGVVVSYVGPKGQDTSGEDYKHGELVEKGYRGVWKDPLMPGKYAFNTYAGKIVKVPTTNIILKWISNQTGTHRYDENLKEVSLITKDAFEPSLPLAVVLHIDYRKAPLVVQRFGDLKMLVEQTLDPMVSAYFKNIGQKKTLIELIQQRDEIQKMASEEMKERFAHYNLELEEVLIGTPMSSPNDNKIDAILEQLRDRQIALEQIETYSRQQKAAEKERELREAEARAAQQKLLTESEINIQIQTNQGKAEYQRSLQEAQKIKALAEAEAEKEARIGIGRAIAIEEQVKAYGGPQYQVLQDVMGKFTQALEKTGIDIVPETVVAMGEKSSSISFNAFEMLLTLLLTKELGVEFKAKETEDENVKKIKQEILNSILLAKEDEKEEKTEQVSQGLQQQSNVS
>NC_014652.1|WP_013404317.1|2603730_2605809_-|alpha-amylase
MSALKKLVEILNNKAKEWDGKNDFRVPKLWDSFGYDGFEKKENNDGTISVNPYKFVAQAIEKAILPCMKNNTDYLQPLSEILSKDNRPSEKSYSSWIEKSSVYGMQIRTFSAWDHDCSKELELENSFGLKDTGTFVKTIALLPYIKRMGFDAIYTLPITKNSTRYKKGEMGSPYAVKNFFELDPVLFDPMAGELSIDEQFKALIEACHILDIRFIIDIIPRTSARDSDFILEHPDWFYWIKIDDLKDYGPPKLTLIKEFTKANEENIELIYKDPAVQKHIKKFVPSPDRFAPQKWQSIKERCEKDKNLDFFELIEKEIGITTAPAFSDCLNDPQPPWTDVTYLRLYLDNPVQSAKYVDESQPPYILFDVIRGNIFKGKMPNKELWEKIASIIVHYQKNFGIDGARIDMGHALPKELEDMIISNARKVDPEFCFIAEELSMNAHRKAKQSGYDMIIGDLWAREPRYYQGTLKKVLDILLQLEVPVFAACEIPDSPRAASRLGKREFSRFATVLNFFLPNSVPFVTCGQEVYEVQPMNLGLDPQPEGKFMLSKSDPLYGKLAFFDKYALHWTNEGADEMIALIEGVAKIRKEYLDFMSKENFFKIPHNSKFVLAFGYKLFTEHEKQYLIVVANADILRKRKIRLDLMKAGLFDVGKGRQIECIYSLKGDKNHVYDFPHVTVDMETLDIKILKVK
>NC_014652.1|WP_041723223.1|2602848_2603646_-|polysaccharide-deacetylase-family-protein
MKKIYYCFPGGRFKALTMSYDDGKKQDIKLVEIFNKFGIKGTFNLNAGLLGQDDRISKEDVKKLYEGHEVASHTYNHPTIARCPHDQIVQQIIEDRKILEDIVGYPVRGLAYPNGSYTSEIKKLLPYCGIDYARIVGDSFDFALPFDFYEWKATCHHNHNLLKLAEQFLSFYKKQYLYLFYVWGHSYEFDNDNNWDLIEEFCRMVGNQPDIWYATNIEIVDYIKALQNLKFSANGEFVYNPSSIDVWISVDDKIVKVEGGKITKL
>NC_014652.1|WP_013402019.1|2601222_2602653_-|ISNCY-like-element-ISCahy1-family-transposase
MFNTKPKQLSFIDLFSHLKASALYKPESLLGLFNKFIDLSHYIPSSFYNAYYKYFGKHRYFSLESMLCCFLVQKLLKLNTLTQLRAVLLNSFELRSFCNLHGNVPSISTLSRFRKIFASEIHKLFQNISIHAHNISIQQCPQDSSILIFDTTGIVPKVRENNPKFIHLLLKNTSKANPELPSEKVYSLVYSSLPKTANANSNIRLMFVNGHFCWALKFAVITNALGIPLALVPLFNYDSPSSDPQEAKAISDSKGLIPSLETLFSYIPKNFSTFIADSALDSHNIYSTLKNTFNFSKIVIPLNTRASKNTTPTSDPNIVISEDGIPICKKFNKPFKPEGKCQGKNRSLRLKWTCPMSQYKDGKRICSCPQPCTTSKSGRMFYTYPDNFRSFPGINRNSQEFFDLYKKRVAVEQTIYHLKSYMGSDTISTYDHISIFSDFLLSAITFSLLFILAHNIKLYCSKLTIKKLNKLKKLIA
>NC_014652.1|WP_041723222.1|2599864_2600617_-|DeoR/GlpR-transcriptional-regulator
MFAEERKSKIAQMIKSGQSVKVSELAKLFGVSESTIRRDLAELEALGIIKRTHGGAVNNFITSFEPSFAEKEDKFAKEKEYIGKLAASFIHDGDTLILDSGTTTQYIARNINAKNITVITNSVNIAYELSNNDNFEVIVTGGVIRTKTKALVGDITQSVLRQFRVDKAFVAANGVSIEFGVTTPSHVEAAIKRAMIENAKEVFLVADSSKFGQVTFSLICPVERLDYIITDKMDDRQRAEYEKLGVKVIT
>NC_014652.1|WP_013404313.1|2598889_2599837_-|1-phosphofructokinase
MIYTVTLNPAIDMTVYIDELKKGQVNRSNHCLIDAGGKGINVSKVIKSLGGKSIALGFLGNDNKDWFLKYLKNMQIDYDFIFVDGLTRTNIKIVETAQKVYTDLNQNGFEVKKKDINLLFDKIDRIAKTDDIFVLSGSLPPGTDEDVYVELIRMLKRKGAKVIYDADGKALESGVLEKPDVIKPNIHEFKCLFDVEENDLNSIVSSAKKLIENGIKKVLISMGSKGAVFVTENMELFAKAAEVKVKSTTGAGDSMVAAISYGLSQNMDDVSIFKLALACAAAKVSKEGVKPPEKNEIEGFLEKIKLERLGELKWI
>NC_014652.1|WP_013404312.1|2598449_2598899_-|PTS-sugar-transporter-subunit-IIA
MDIKALFSPSRMSFDLQAETKEAVIDELIDLLYKDGKLSDKEKFKKAVTKREEEFSTGIGMGIAIPHGKDSSVLEPCITFGVSKKGVDFDSMDGEPAYIFFLIAVPENADDTHLHVLSFISRKLMHEDVRKKLYNAKSFEDVITAFEEK
>NC_014652.1|WP_013404311.1|2597063_2598428_-|PTS-transporter-subunit-EIIC
MKKIVAVTSCPTGIAHTYMAAEALQMAAKELGVEIKVETRGSVGAENEITPEDLKEAHAVILACDTKIDEDRFQGLPIVRASVKDAIKDPKGLITKAMNMEKKDYVDKVFEAKKEAKEKATGVYKHLMTGVSYMIPFVVAGGILIAISFAFGIKAFEKKGTLAAALMDIGGGSAFYLMVPILAGFIAFSIADRPGLVPGMIGGLLANKLGAGFLGGIVAGFAAGYLVAWLKKTIKLPKTMEGLMPVLILPVLSTLIIGLGMIYVVGEPVAALNKAMTEWLKSMSSGSAVLLGIILGLMMAFDMGGPVNKAAYTFAVSTLAAGQPSTIMAAVMAAGMTPPLGLALATLIAKDKFTTEEREAGKAAFFLGISFITEGAIPFAAADPLRVIPSIMIGSAVTSTLSILFKCTLAVPHGGIFVLPIPNAVGNLLLYAVAIAIGTVVTALIVSVLKPKKV
>NC_014652.1|WP_013404310.1|2596723_2596984_-|HPr-family-phosphocarrier-protein
MVEAKVVLKNPTGLHARPASIFVTEAGKFKSDIFIIKDGKEVNAKSILNILAIGAKKGDEIILKVVGEDEDKALKRLVDLLENLNE
>NC_014652.1|WP_013404320.1|2618906_2619170_-|CRISPR-associated-endonuclease-Cas2
MYIIVTYDVNEKRVNKVRKILKKYFTWVQNSVFEGEITFGKLEKCKRELLSVIEKEEDSVYFYEMEYKLVCNKKVLGQEKNYDSIIL
>NC_014652.1|WP_013404321.1|2619340_2620321_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKSLYLTSNGRLKRHENTLYFEIGDEKRAIDIENVEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYTGSFLPRKKNVSGDVVVRQALHYLDREKRLFLAYCFVESAVYHMMRNLRERKEAEAFLIAIEDEWEKGRFNISNIAELMGLEGRIRNIYYQSFNQFLPDDFAMEKREKRPPTNPINALISFGNSLIYSHTLSQIYQTQLDPSISFLHEPSEKRFSLSLDISEIFKPLIVDTVIFKLLNNRQLELEHFDEDLNYCYLNQEGKKIFLKEFQNKLETTVRHRQLNRNVSYKGFIRLECYKLIKHFIGDQIYSPLRAWW
>NC_014652.1|WP_013404322.1|2620328_2620841_-|CRISPR-associated-protein-Cas4
MEDIQEFSEIKFQGIKINYLYICKRKLWLFSKNITFESTSDKVLLGKVLHEYSYPKENTKEVLIDNLIMIDILSDGSIREVKYSSKMKEADIMQVMYYLYYLKQKGIQKQGIINYPKEKRKEVLKLTPEYEEKVKQALKEIEEITTKSIPPPAQKQKICKSCAYFEFCWG
>NC_014652.1|WP_013404323.1|2620860_2623194_-|CRISPR-associated-helicase/endonuclease-Cas3
MKIDSYKGIELYAKRFKNDKGSEYQTIYQHTMDLLNNMEKLFEEYKEEIEEGCKRLQIDYQKLKYLLRLAIIYHDLGKANSKFQQKIRDKTKVHEVPQVKGLSKEVPHNFISIAFVDLEDEIEKGNITCDDFQNLLFAIAFSHDRSFDFSSQYFEKYMNDDVSKYIENQSLKPLLELLPSVPDRDKVVESSNYTYRVINQLRELMFKDSYDLSDKKVIFRIFLKGLLHRLDHSSSAGISAEEAKINNFPEKVEVYLKSKCSFTGFKDFQRKAMEFSEKNVILFAPTGSGKTEFGLNWAFKSKLIYTLPIRVSINAMYERLAKIFGEDKVGILHSDSMIYLLEKYLNLERENQELEALFDSVDLAKNLSLPIIVTTGDQIFTSALKWPGFEKVYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIINLNGKFCLMSATINPLILKHLGDCAKYVQAYSDEELKKRYSHIISIKELSILDCIEEIVEYAKQKNVLVICNTVKRSQEVYQVIKENLKRFEEIPVELLHSRFLEGQKRQKEEIVISNQRKNGIVISTQLVEASLDIDYDILFTELASADSLLQRMGRVYRKRPYNELRPNVIILSKGPSGVGKIYQKEIVDRTEVFLKKFDGNKITEYDKKELNEYVYDIGALSGTNFISKFKKAYELLELGFRADRKIEAQKIFRDVVTISGIPREIFDKNIEKINEALKKINSRSIKSIEKLELISSIRKYTVTAPAYFFAKGGASCYDKDLGLYILDCEYDDQLGLIPPKGLEQSDIW
>NC_014652.1|WP_013404324.1|2623183_2623930_-|type-I-B-CRISPR-associated-protein-Cas5
MLNSLLKIKIYQPFANFRKPFSYGIVDSYPLPPPSTVKGWLHNILGARDGKYYKMAVSICGKFNSVVYDIQRIIKFDRLRGEDDTAPVVNEVSARVVNGIIYVTNLVDVQICIHVNAEENVLERIYENILNSYWGLGRKEDLMRIDEVKFFEPSKVWYKKYIKKRPPEIGMYLKSSTAEKLMIDGIRFRLNNRYEKTKDGLRIFTDKKDVVFIETLEQLNPMAMVDQEVMIDDENIIIDLIGDEEYEN
>NC_014652.1|WP_013404325.1|2623932_2624862_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNKNAGITITVVFEAMSLNYGESLGNISELKKLTRENKIYTYMSRQALRFEKYKFMLENAGIKETPVTGDEQVVQFKKEATIAEYPEIDLFGYMKTSGQGQNAQTRTAVVKITPAVSLEEYKNDIEFATNLNLAKRANTNPNPYQLEQHKSLYTYTVAIDLDRLGKDFDEKGEVVDEISADEKLKRLYSLFDAIKFLSREIKGRRENLSPLFAIGGLYPIKNPFFLNRIRIIKEDSAYAIDPRLLHSTCELTLPNGKKVFDYTLLGILEGFFANEEELKKLLPASSGTIDYFFENLKERARKYYEEGTV
>NC_014652.1|WP_013404327.1|2626793_2627579_-|CRISPR-associated-endoribonuclease-Cas6
MRAKFIFEVSENQSEVHNLPVYYRTIFMSFLKRALSLYDKDYFNRIYWWGEKKNKWQKPFVFAVNLPNMNFQDDTVSFRGDIMLNISTSDYEFFVNMYNSLLNNRLYPYDLTESCKIKLKRMYLVREPEQFSSTMTFKTFAPVLIEKKEGNKKVPVLPFSKDFEEVLNDVVDFEIRNIRLLRGQNKGLQKRLTFRPINIQKTVVKHRISEFVETTGKDIMFLTGFSGLFELSGDPEDLKELYQNGIGFRRGQGFGFVEVAR
>NC_014652.1|WP_013404328.1|2627845_2629174_+|hypothetical-protein
MEKVNQFITKYIYLFAITSLVFPIFIMFSSMVAPIDLSNVFLAFVVMDILFLLIPHLIRAKSQGMWEKILNILFIIVVPQGFALIVLKPYGFFEMFLGQVFCMGLYIHSYLIFEKDQVSLSLGSILAGLWAIIIVGAVSSFMNIPRNITNQYTTYSIIFLVTSIYLINRVNLENLLSRRYRRKNSISNSISYINLFLSIGFIVILLLLFKFKGLAPYVVAFIVETINFVLKVIKKILDFLNSLFATTKPQTDTKNGLEEFLKNMRPAKKSLFAQILDFIGYVLALSILGFLIYKTFGIFVNILKQMMANFLIFLNSIAGNLQIEERGQNYTDVKTFIFAKKSPHQKLKNARAKRVSFEKINDLNLRLRIIFKLTMEYFHHRKNYVLKSSYTPLEMGKTISKGELLNADVVNKLVEEYNKVRYNREYKVLSTENFERFLKNLK
>NC_014652.1|WP_013404329.1|2629260_2630112_+|divergent-polysaccharide-deacetylase-family-protein
MRFKRYILVIIERTKLSKFFIPFLALFCGAALLLVYLFYNPKPKIKEAASQTLSYVAIIFEDAGMDEEEVQKLLSINVPFDIAIIPFLPFSNKISLTSHEKGKEVILHLSMEPEEESTIWLCPRSIMNATPDDEIEKIFKDALANVANSKGLSIHLGTLVCKNERIVKKLSTIAKENNLFIVDSTFSSESLFAKIGKQMGLQVVIPDIVLDSRNELKPIQDKFNLLFNIAKKKGFAVAIGHLGTDGGITTIEAFKQAIQKAEKENIKFVFVSEILKLQKENIK
>NC_014652.1|WP_013404330.1|2630204_2632427_+|hypothetical-protein
MKKNLVAVLITFVFFINLFSFIKVQALQSAPEKHLFSVKPKGNYIEILKGSQVVAKILPPELLNESPAKKEETQTILLPFIENGAVNWRFEKNEPSDLLFLSDGKNNTLKLNFHTFDVFYKITSPYIDLKDEYQSAQLTFNYNCEFKRSPQLKDDETINVEISIFSENKTKILVLPEKIKVTSGRGTFKTSFSIPVDSRYISFEISQTSRNLISCEFENFKITLVKPSKYTFLLKNVQVYNNYIQQEFENSFQKFTRKIFVSSSQDVINVEESLKSKEDHQVFKEDSIVEFESRPIFILKRDYKLEKFTKPMYVTDSLSDFYLKLENCAIGYANNYDSIEAYNLKNKANVFMFLSNSDDIKYFVIGKNKEHIYTTTQLFRKGFEKTYVYSIFPAGYTYSIKSRSPNATKAILIFSHHSDSNMISIIKAMMFGTTDTKDPSYMKKGFVGYKIPITWGFFYKSVKGIPGFDNPEYRKLIEFLAQKKIEVALHTASPVAKENTVELIKKALEDTSYLKLDDWIDHSLSDGTRSAALKSEGAIHGSKNYSFDLFLKHGYKYCWSYLDVKLDTLNMLQPDKVTWHPQIFFKNYNFGEGDSLYQWNSARFRNLPKMLSSSQLDKLINENGVCIIHDYFAHPMQKNKLFIVKNKKVYISPQFDKSLRLVSNLMSKKLLWVPTVKEFIDYEIALKNVQITPLDSTTLVVDNKNYSEIKGFTLITLLPNGQEKRTTVNLLPGVNLITIP

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Crispr_ID: NC_014652_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_2

2668290-2668384

TypeI

Consensus_repeat	Method
GTTTGTAGCCTCCCCGTTGGGGATTGAAAC	CRISPRCasFinder

1 spacers

cas2,cas1,cas4,cas3

The CRISPR arrays of NC_014652_2

>merge|NC_014652|2|2668290-2668384|CRISPRCasFinder
GTTTGTAGCCTCCCCGTTGGGGATTGAAACCAGAATACTCTTTTTCTGTTTTATTTACTGCATTTGTTTGTAGCCTCCCCTTTGGGGATTGAAAC

>NC_014652|2|2|2668290-2668384|CRISPRCasFinder
GTTTGTAGCCTCCCCGTTGGGGATTGAAAC	CAGAATACTCTTTTTCTGTTTTATTTACTGCATTT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404362.1\|2671556_2673920_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404363.1\|2675218_2675800_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404353.1\|2658799_2659714_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_014652.1\|WP_013404354.1\|2659879_2660275_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|237320
NC_014652.1\|WP_013404369.1\|2679411_2681835_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_014652.1\|WP_013404352.1\|2658353_2658599_+\|TM0996/MTH895-family-glutaredoxin-like-protein	unknown	unknown	gnl\|CDD\|379063
NC_014652.1\|WP_013404359.1\|2664106_2665162_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	unknown	unknown	gnl\|CDD\|180835
NC_014652.1\|WP_013404365.1\|2676238_2676433_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404368.1\|2678885_2679383_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_014652.1\|WP_013404366.1\|2677577_2677841_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014652.1\|WP_013404367.1\|2677846_2678839_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_014652.1\|WP_013402015.1\|2673951_2674899_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_014652.1\|WP_013404351.1\|2657349_2658321_+\|permease	unknown	unknown	gnl\|CDD\|223773
NC_014652.1\|WP_013404361.1\|2668445_2671382_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NC_014652.1\|WP_013404364.1\|2675882_2676239_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404360.1\|2665341_2667789_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NC_014652.1\|WP_013404356.1\|2660952_2661603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378253
NC_014652.1\|WP_013404357.1\|2661839_2663255_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_014652.1\|WP_013404355.1\|2660298_2660874_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_014652.1\|WP_013404358.1\|2663312_2664008_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404368.1\|2678885_2679383_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.6971e-72
NC_014652.1\|WP_013404353.1\|2658799_2659714_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.21896e-27
NC_014652.1\|WP_013404354.1\|2659879_2660275_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|237320	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional.	1.2492e-59
NC_014652.1\|WP_013404352.1\|2658353_2658599_+\|TM0996/MTH895-family-glutaredoxin-like-protein	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	2.80124e-27
NC_014652.1\|WP_013404359.1\|2664106_2665162_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	gnl\|CDD\|180835	PRK07094, PRK07094, biotin synthase; Provisional.	0
NC_014652.1\|WP_013404366.1\|2677577_2677841_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.57908e-32
NC_014652.1\|WP_013404367.1\|2677846_2678839_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.79582e-159
NC_014652.1\|WP_013402015.1\|2673951_2674899_-\|ISNCY-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.00047e-12
NC_014652.1\|WP_013404351.1\|2657349_2658321_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	2.3143e-66
NC_014652.1\|WP_013404361.1\|2668445_2671382_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	0.00860915
NC_014652.1\|WP_013404369.1\|2679411_2681835_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.75879e-46
NC_014652.1\|WP_013404360.1\|2665341_2667789_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_014652.1\|WP_013404357.1\|2661839_2663255_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.79934e-48
NC_014652.1\|WP_013404355.1\|2660298_2660874_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.84411e-43
NC_014652.1\|WP_013404356.1\|2660952_2661603_-\|hypothetical-protein	gnl\|CDD\|378253	pfam09822, ABC_transp_aux, ABC-type uncharacterized transport system. This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.	0.00318159

>NC_014652.1|WP_013404360.1|2665341_2667789_+|PBP1A-family-penicillin-binding-protein
MQSKNKKAKKQTPFRLFLKSFVRTILVLLIASMAILIGAGFGMVTGYIKAIPANALEIITSSVDTQTTIVYDQSGNEIARLHGNENRIRVPYSKIPKNLINAFVAIEDERFWQHNGIDIKRIFGAIFKNIKTGSLSEGASTITQQLVRNKLLSFEKSFKRKIQEQYLAIQLEKRWTKEQILEEYLNTINLGSGAYGVGAAAYTYFGKDVSQLTLAECALIAGITQNPSYYNPYVFPDHAKKKQEIVLKKMLELGYITEQEYLEAKNQPLVYVKKDISAESAYKHPYFVDSVIDEAIEILSEKKRISEDEAENLIYGGGLKIYTTMDETIQSTMEDVFSDPSIMPKIKHYDASGIPQPQAAAVLIDFSTGAVKGIMGGRGNLKGVRLLNRATMSVRQPGSAIKPIADYSLALENGYTAATVIDDIPFSIGGYTPRNWYKSNVVSGKRGYKGFMTVREALIWSANVPAVKVAYNLGIQNVYRNLKRFGFTTLAPQDMNSLSIAIGGFTYGVKPIELTAAFAAVANSGVYIKPYFITKIEDKNGITIFERTPYKRRVMDEKNAYILTNMLQSVVTARITVGVRFSYPVAGKTGTTDDSKDRWFVGYTPNYALGVWVGEDKPVALNYLTGTNPALKIFKGIMDRVVSQKGVSSEFIRPAGIVERYVCKESGKLATSLCKQDPRGSQVIKEIFAEGTEPTEYCDRHVKLKVCTESKKLATQYCPTTIEKVFIKRDNPIWPGSSVVPPDDYMYQAPTSYCDIHKAPQEVVVPKQNNTSQQQEQSSAQSEQPSSADQGSQQSVEENLPLESGTTQSSTYSSQ
>NC_014652.1|WP_013404359.1|2664106_2665162_-|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE
MKVKDILEKACHENILTKDEIKLLLMAEGDDRDLLFKTADRVRKEHVGDEVFLRGLIEFSSYCKNDCFYCGLRRSNRQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQSGEDMYYNKDSLCSIIRKIKSSVDVAITLSIGERSYDEYKAFKDAGADRFLMRFETSNEKLYRKYHPGMSFENRIECLKWIKNLGYELGTGFLIGLPGQTIDDLAQDILLVKELDADMIGIGPFIPHPQTPLKDAEEGSVDLTLKSIAILRLLIPDANIPATTALGTLDPLGRQKGLMCGANIVMPNVNDLKYKLKYELYPGKICINEDATKCRGCIESIIVSLGRKVGHGKGQSRHYKRAAAS
>NC_014652.1|WP_013404358.1|2663312_2664008_-|hypothetical-protein
MKREKANTKRVWVVVLIVAVCALGILAGYYMTGYLAKKPAAVDQTLQTDQPSQQLQEETGQTNPNQTQQGQSVSSQPSSQNQQNTTTLSDVYKAFARFDGGVDAHTIQLSLINTNFDYKEFETNENLTQGLNLSEGEIVEVEFEKPQDGGSPRIVSIEKPDKVTLKGKFVGLADNNFAEFVFDQKHVVLQISEVLDKVSYLDENTDVEVTFKTNPQSPQSNPVVEDIKVLK
>NC_014652.1|WP_013404357.1|2661839_2663255_+|MFS-transporter
MHGQEDRKINKNILIATTLSSFLVPFMSSAVNIAAPDIAKSFKLNAEELNLVISIFLIFSAAFILPMGKLSDTFDRTKIFKTGLLLFTLSTLMCALSNTVEILFVFRSLQGLFSAFTFVTSMAILIENHSQQIRGRLLGINTAVVYLGTSLGPFLGGVLVRLWGYRSIFLFGFAIGLVGSFVSLFLLQKEVKNTKQAKLVDSLKSLDKMGTILSMTGLFLLMYGASTFELGNTSKILFFAGLILMVIFVVAEAKLQNPILDVKLFVKIPQFGFSNLAALINYSCTFSASYLLSLYLQLVKALPSQLAGSVLIVQPLSQVITSLIAGRASEKIEPRKLATAGMVLTTIGLFVFSLFSSKTSLVLAVANLLLMGIGFGLFSSPNTNVVMSCVPKSLYGTASSTISVMRVVGQAFSMAIVSFVSIMFLKGVKLSHENYFLILKSMKISFLVFACISILGVVASYKRGNIYSEEE
>NC_014652.1|WP_013404356.1|2660952_2661603_-|hypothetical-protein
MKVAWSATHQEFLLSDGYYFSGLYKELSKRGISIEEVEDFERLFEYDAIVFNYPENPFSDDEKEKIREALVQKGKKIIFTAHFKNKDGVSEICNSITREYGIDILPEGIKDEIHHLEDDLFIITTDEVELYRKGVKEVVFPYSAPLEVGNGAEVVLRARKTSLTDSGKKSPVLIAQKRFESGGKLIVCGSCIFWDNFSLFRLDNLQFVVNIFEGAE
>NC_014652.1|WP_013404355.1|2660298_2660874_-|Uma2-family-endonuclease
MEDYILEEFNYDKYKNIEDDNRYEIIEGRLYNLAPSPSIFHQHVCGNIYHKLRIFLQGKECIPFISPVDVILAPKGAEDKDIKNVVQPDVFVICDKSKIDQKGIIGAPEFIIEVVSPNTSARDYLIKLKLYEKYGAKEYWIVNPQEKSVAVFIQAEEGGFDRGRIFFHPAVVKSSALPGFEMSTEEIFSNI
>NC_014652.1|WP_013404354.1|2659879_2660275_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MADKYQQRRFDIYGYEKIDTEVLEAIPYEYPEKSTVVEYVTEEFSSVCPWTGLPDTAKLTIRYIPHQKLVELKSLKYYLTSYRNVGILQEHAVNRILDDLVKLLEPKFMEVIGEFHERGGISTKVVARYEK
>NC_014652.1|WP_013404353.1|2658799_2659714_-|AraC-family-transcriptional-regulator
MPEKEPLYIEEIFDYVSQRPQKFALNFWEDPRYFKLHRHNFVEFMYVVKGEGTEHINSISYSLKPGTFSIVMPYQIHRIDYSEQNPLSIYVVAISFEELLAPSSIFYRIGELLLSYDENILPYYYFEGKEKEVMDRLFKEAWIYYNQQDVWAEIILKAKILEIVAYFDRCRNFACAKNSQRPASDFVQNRAQKESVPVPTDYWQLVYYVHKNYNQNIDLKTLSKEFHLSPSYISQLFKKLVGSNFHNFLNEVRLQHACSLLVSTDKPVTDIALEVGFDSYSTFARVFHKCKGMSALEFRKRGGT
>NC_014652.1|WP_013404352.1|2658353_2658599_+|TM0996/MTH895-family-glutaredoxin-like-protein
MVIKVLGGGCANCKKLMENAKRAAEELGIDAQFEEVKDIEKIMSYGVMRTPALVVDEKLIFSGRVAGVEEIKEVLKKEAGN
>NC_014652.1|WP_013404351.1|2657349_2658321_+|permease
MFTPVQKFADVVTYNIFKIPQGSKLASAVNFFIFDTIKIFILLFLIVFVITFIRSFFSPEKTRDILSHKKQNVYIAHILAALLGIVTPFCSCSAVPLFIGFVEAGIPLGVTFSYLIAAPMVNEVALGLLYANFGLKIALIYVLSGEIIAIASGIVIGKLNLEKYVEDYVFKIKVGNVQIAEDKKTLNQRLNETFDFTVQLIRKVWVFVIVGIGIGAFLHGYIPTGALAKIAGKNNPFAVIFATALGIPLYSNAAGIIPLVSEFRRLGVSMGTSLSFMMSVTALSLPEMILLRRVLKPQLLGIFVAIVGCGIIATGYLFNLILG
>NC_014652.1|WP_013404361.1|2668445_2671382_+|transglutaminase-domain-containing-protein
MKIKTKKVINIIVILALLTNLCISNTAVVYADTNSATAQISNVQVTTTKTAGRTVTYKINSINPDELSKVINDFNSKYGYLDVEDTIIIEFPGDYLFNLINDCLLYEFDITNYTSSMSQYSHEVLDKKYGAMKTSISSTSLYSFMRYKKSNGKYRYVYVDPRSPFNFYIEDKDFYKYFKVKEDSMFSSSDAKHIFYSKDFFSLNPIGQYFFNRLKIAPISGYSFIYQGKMYICGLEPAYNFFKEFLSKPAENIDDLPFEPIESAEGFKVIIANALYKTRICDTETSLELGNIWDGQIPYLIQTLKDIRQKAKEMTKGCKDLVDVGFRLERFFYTEVKYDYKWLEEGVSAVKAEKIKSDSEWNTEKGKKYAWAKSSIMKIWNYRYGICQDYARLAEVLGFYMGLNTLYADSNDLNHAWYVHDIYGLHWSSDTLGTTTDHILTPVTILTIGHQMDNKPVISEFLEWHTTRGFINLLKTNRSFAEKLFKKLVDNYRILSTYSPEVFLNDDYNYRIYDINGKWAPNSFTQDLWRREALFVLFPKYKEPPKKVTSIEQVFKDLDSRNMNDYEVRNYYILLQDLFKKEPKSLEEGRQVPIDILRKILNYVTVKTGKEYNSLKVNDDLELRYIDKLDSYVVLDPNILVCNKVYYTYISYVFPYVDLYFLVKPVYKKEGIAYGIYVGKLPKSGDLNSIDNKFIEDYIKNIPIYRANLAESDLAFKTFTVEDEPVVDKFDIVVREGDTFKINVSQKYGLPNTKFKFISVSKESMDKLLQGKISEASSQVSEIKYLGNSTFKALEPGIVKIIPVYEDEQLLLDLGKTLLMFSPDNKSNYSSSEWLNNHFAFRQDCGIIDILGNSYRTTWGFTNEEKIANSTWFYTIHPFDDEARRLFTTFPAMSIKVKVLPSPKAYFKTSKIIAKVGAVITLPIATTGSGAKYKIVVSNPNIVEIKNNNSVRIKSKGIVKLTIINSNGSKSECIVEVK
>NC_014652.1|WP_013404362.1|2671556_2673920_+|hypothetical-protein
MIKIKLNKKSIIALTVVVVFILVSVLGAIFYNENTKQDTMQNINSQPSTDTGVKNEKSNTNIDKLFNWMNVFKVYADATEDTNDILSEENIKAVPVWQPGEINPVIYQKNGKLYRLNDIPIETLVKYCRLLHDIEVVDILRKYNNSKARFTDRVDGSEWFPTKWGLLYRRIGQPFYSKAICYSDGYTRPVTFMEKMVTSWYSDHYNWFTLVPPIKIKYDTIDVSYDPNCQYISNRKRELARNFILVPKPYIDRYLANYPTYLPYQDIKEGIPLGGTNKFISEEEVLALPRAFMDASEELFPIYFNRDRVKFDITRAYTYLSIRFLKDFDTEAYNRLASVIKKYKMSLGKDAFVSVRMQNEPVIVNGAASRQYFLISLKFMYIKPTLDIKPKFAAVPNKKGVLYLIQLDPYTISFEKLYCISELYSKQDLRPLLTELGKIYKAIASGKIDGNGYFTFLKNVKLTSGQSNSFFKNMGKLGDEYLKLGKSKNPLYVAASRTTTFRAACLNYNRKYIVDIFYDILNTMGYLDDFKQAWNLGAKYASAVYNTPDPKTFDPINLVDYHISQDYYPTFIFGKVDLNVAGFNKYKIRDYKNFGKGWYSLVNYYVMNQAISKNIVNKDIFSKYYNNNYFVMPISTDAWATKDFKNLTPGATPHLHSIMIITGRYPDLDNNGKPYVYRSTWNGVVGPTLPIIFRLFPEFVNKDKTRYPYFAVESMLFDGISFYDKPVIPWSDMNMSKSYKDLIQRSWTTNLAIKSDVKEGNDFNLLTTNEYSILHRCIYNNEYQVVE
>NC_014652.1|WP_013402015.1|2673951_2674899_-|ISNCY-family-transposase
MSNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHSYFSKWAKVIEEGYIEGIARILVREIVPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVEDEVIPIVWWLTRANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVADRLEIKFVAAVNKRNSKDFSNVKNILRVKNMEFLRSEEGQRLYKQRTKIERLFGKLKGEYNLEQIRLRGFRTYKRHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_014652.1|WP_013404363.1|2675218_2675800_+|hypothetical-protein
MKYFAKFRLREKIRVKKSFIRLIFTLVIMIISFIASFIAKADSSDPVSFIYDPVVYVGDELYRIKKDDLYNLSIRGLFDLLSQKNYISDLMTPSVLNKSDESSNDLYNLIAEKLSVKVFPFLNILEPSGNFLIQSELNTRNLSMGLSITEKADNTAIAKLGNLLSKALAAGSPLLEQVVSTIKLPYGIVPEGL
>NC_014652.1|WP_013404364.1|2675882_2676239_+|hypothetical-protein
MKQDCKTIEDFGRVAFKLRFIDKKAAWNDIYEKTKDFDVIGYVKEHYIDYVEQNKNEIIGAIMENTVEPEKRDEMRETMRGWLDEAIRMVKNGEELYWMPERIFYDSVAVAMKKIGVK
>NC_014652.1|WP_013404365.1|2676238_2676433_+|hypothetical-protein
MYVIAVLIRDKRNEEKIYEMIEDAFSSDVVNDEILKKREKVLEEIKSIGEIEVYNYIQKYGVSM
>NC_014652.1|WP_013404366.1|2677577_2677841_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDVNEKRVAKALKKCRQYLTWVQNSVFEGNISEGTLRRLILELERILDLSEDSVIIYKFQNTWYSERQIIGIEKNPVDFMT
>NC_014652.1|WP_013404367.1|2677846_2678839_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKDLYVFNSGFLRRKDNTIMFETDEGKKYFPVEEIESVFIFGEVDINKRFLEFMTEKNICVHFFNRYEYYVGTYYPREHYNSGIVILKQVEFYNDYNKRITIARSIVEGAVLNMLVVLRYYNSRGNMLKDEIETIERMRHNISACSDVNTLMALEGNIREIYYRCFNKILDDENFTFVRRSKNPPLDRINALISFGNSLLYATTLGEIYQTQLDPRIGYLHSTNQRKFSLNLDISEIFKPIIVDRVIFSLVNKKVLSEKHFEKELNGIILNDQGKKLFVSEYNQKLYSTIMHPKLNTQVSYKRLIRMEAYKLQKLFLENIEYKPFVARW
>NC_014652.1|WP_013404368.1|2678885_2679383_-|CRISPR-associated-protein-Cas4
MDIYMTGVYIWYYNICKRQVWLMAHSILPDENDDNIVLGRFLHEYYYRKDQKEIKFGNAVFDILYQDKDEIVIGETKKSSRFKEASRYQLLFYIKLLKEAGISAKGVLFYPEERKKEEVVLTAEEEEKLEKMIAEIETIIEKESPPPAATCRYCPKCAYREYCFA
>NC_014652.1|WP_013404369.1|2679411_2681835_-|CRISPR-associated-helicase/endonuclease-Cas3
MEYYSHKNPDKLLYDHLLEVYHYAMEANVELKNWEKEALQIICLCHDFGKFTTFFQSHLSGVSSKHSQHGFLSAIFGVFCWMQKKGLCLQQMNPPASLDEVISLLIYACILHHHGDVKDISKNLPEKFKGDFKADINLVQKIDDAYVQIEDLRCNAEDIKPLLEKIGLGNEFEKFLAQQRGFIEDILRYLKRIEYGIRLIGVIPQAFKDGTELYFAQQKLYSLLIWADKMSAANYKLLFPCYASSDRLIVVRDKVIKPTQDKNLQRIRQSVFEAVLSNIEKNKEKDIFSITTPTGTGKTLAGVFAALKLKEILKKSGRIIYALPFTSIIDQNYHVVENLFEAIEDFEKNRDRYLLKHHHLTDVEYRGKEEALKEITDEITVFEKVASECFIENWTSGFVVTTFVQLLETLISNRNRMLKKFHTFYDSVLLLDEIQAIDVELLPLVEEVLRKLTQLFRCKIILMTATKPLIFEDACELAGFCDYSIFNRTKLMYHHSDLKVAEFVDFFLQEVYEDEKSFLIVANTINQSHQIYNGIKNNLKNKEVIYLSASLVPKDRKDIIKKIEKMLESGAKPIVVSTQVIEAGVDLDFDCVVRDIAPIDSIIQCAGRCNRHNEKSQGNVLVVNMKDESGITFAKRVYGNTAIEISRGLLLKHPEVEERDYGMLIDNYFRMIKENKSFKKSEEFLKAIRLLKFDSILEKEELTISRFSLIQQRGGYVSVIIRNNEEIEDAYQRYINSFSIKDYYKRREIYLELKNILFEYTISVPLKYAQIFDEEKGILSLPPTSCQRYYSSKTGFVYDPNDHIIFA

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Crispr_ID: NC_014652_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_3

2686105-2687448

TypeIII

Consensus_repeat	Method
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CRISPRCasFinder
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CRT

20 spacers

cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csm6,cas6,csm5gr7,csm4gr5

The CRISPR arrays of NC_014652_3

>merge|NC_014652|3|2686105-2687448|CRISPRCasFinder,CRT
GTTTGTAGCCTTCCCTTTGGGGATTGAAACAAAAACTTTGTGGAAAACTAAGTATTTACAAAAGTGGTTTGTAGCCTTCCCTTTGGGGATTGAAACCACATCGAAAATGCGGGTAATATTTTTATACTACCGTTTGTAGCCTTCCCTTTGGGGATTGAAACAGAATCGAAGTCATGAAACTTGCAGCTTTGTTTCCTAGTTTGTAGCCTTCCCTTTGGGGATTGAAACCACTTGCTACAGCACTTGTTATGTCACTGCCTGCATGGTTTGTAGCCTTCCCTTTGGGGATTGAAACATGCATATCCCTCTCCGAGCACCCAATTATTAGTTTGTAGCCTTCCCTTTGGGGATTGAAACACGTTGCAAAGCGGTATAGGGGACATGGGCTTGAATGTTTGTAGCCTTCCCTTTGGGGATTGAAACAAATTATAAATGCTATGGGCCAAATTAAGGTAAGGTTTGTAGCCTTCCCTTTGGGGATTGAAACATGTTAACTCAATGTATCCTTTTGTTATGAGAAATAGTTTGTAGCCTTCCCTTTGGGGATTGAAACTCATTACCATCTCTTAAAGTAAAAAGCAAACTTAGTTTGTAGCCTTCCCTTTGGGGATTGAAACTCATTACCATCTCTTAAAGTAAAAAGCAAACTTAGTTTGTAGCCTTCCCTTTGGGGATTGAAACTATAATCTTAGTTTTATCTTCTAATGTTTGTGCTTGGTTTGTAGCCTTCCCTTTGGGGATTGAAACTAATATCTGATTTGGAGACTATTACCTTCTCTTTGGGTTTGTAGCCTTCCCTTTGGGGATTGAAACTTACACCATTATCGTTAATTACTAACTCATAAGTTTGTTTGTAGCCTTCCCTTTGGGGATTGAAACCTATTTTACTCGGTATTAATTTTCACCATTTTACTCGTTTGTAGCCTTCCCTTTGGGGATTGAAACTCTAGACGAAAATATTGAAGCTATTGTAGAATATGAGTTTGTAGCCTTCCCTTTGGGGATTGAAACTTACGCAATGAGAGTTCAAACCATCAAGACTATGACTGTTTGTAGCCTTCCCTTTGGGGATTGAAATACCCTTCGTCAAAATTATTGATTTTTTTCAATTCAGTTTGTAGCCTTCCCTTTGGGGATTGAAACGGGTAGGGGCCCCAAACGAGCCCTTTGGGCGAGCTTGGCTTGTAGCCTTCCCTTTGGGGATTGAAACATCAATATGTTTAGTTGTCGTTAGAAAAGGCGGTGGTTTGTAGCCTTCCCTTTGGGGATTGAAACTTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTGGTTTGTAGCCTACCCTTTGAAGATTAAAAA

>NC_014652|3|3|2686105-2687448|CRISPRCasFinder
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AAAAACTTTGTGGAAAACTAAGTATTTACAAAAGTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CACATCGAAAATGCGGGTAATATTTTTATACTACC
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AGAATCGAAGTCATGAAACTTGCAGCTTTGTTTCCTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CACTTGCTACAGCACTTGTTATGTCACTGCCTGCATG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATGCATATCCCTCTCCGAGCACCCAATTATTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ACGTTGCAAAGCGGTATAGGGGACATGGGCTTGAAT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AAATTATAAATGCTATGGGCCAAATTAAGGTAAG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATGTTAACTCAATGTATCCTTTTGTTATGAGAAATA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TATAATCTTAGTTTTATCTTCTAATGTTTGTGCTTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TAATATCTGATTTGGAGACTATTACCTTCTCTTTGG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTACACCATTATCGTTAATTACTAACTCATAAGTTT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CTATTTTACTCGGTATTAATTTTCACCATTTTACTC
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCTAGACGAAAATATTGAAGCTATTGTAGAATATGA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTACGCAATGAGAGTTCAAACCATCAAGACTATGACT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAT	ACCCTTCGTCAAAATTATTGATTTTTTTCAATTCA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	GGGTAGGGGCCCCAAACGAGCCCTTTGGGCGAGCTTG
GCTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATCAATATGTTTAGTTGTCGTTAGAAAAGGCGGTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTG
GTTTGTAGCCTACCCTTTGAAGATTAAAAA

>NC_014652|3|2|2686105-2687448|CRT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AAAAACTTTGTGGAAAACTAAGTATTTACAAAAGTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CACATCGAAAATGCGGGTAATATTTTTATACTACC
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AGAATCGAAGTCATGAAACTTGCAGCTTTGTTTCCTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CACTTGCTACAGCACTTGTTATGTCACTGCCTGCATG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATGCATATCCCTCTCCGAGCACCCAATTATTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ACGTTGCAAAGCGGTATAGGGGACATGGGCTTGAAT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	AAATTATAAATGCTATGGGCCAAATTAAGGTAAG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATGTTAACTCAATGTATCCTTTTGTTATGAGAAATA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCATTACCATCTCTTAAAGTAAAAAGCAAACTTA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TATAATCTTAGTTTTATCTTCTAATGTTTGTGCTTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TAATATCTGATTTGGAGACTATTACCTTCTCTTTGG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTACACCATTATCGTTAATTACTAACTCATAAGTTT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	CTATTTTACTCGGTATTAATTTTCACCATTTTACTC
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TCTAGACGAAAATATTGAAGCTATTGTAGAATATGA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTACGCAATGAGAGTTCAAACCATCAAGACTATGACT
GTTTGTAGCCTTCCCTTTGGGGATTGAAAT	ACCCTTCGTCAAAATTATTGATTTTTTTCAATTCA
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	GGGTAGGGGCCCCAAACGAGCCCTTTGGGCGAGCTTG
GCTTGTAGCCTTCCCTTTGGGGATTGAAAC	ATCAATATGTTTAGTTGTCGTTAGAAAAGGCGGTG
GTTTGTAGCCTTCCCTTTGGGGATTGAAAC	TTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTG
GTTTGTAGCCTACCCTTTGAAGATTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404378.1\|2692047_2693841_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NC_014652.1\|WP_013404375.1\|2688890_2689112_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404363.1\|2675218_2675800_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404369.1\|2679411_2681835_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NC_014652.1\|WP_013404365.1\|2676238_2676433_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404370.1\|2681927_2682680_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_014652.1\|WP_013404366.1\|2677577_2677841_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_014652.1\|WP_013404371.1\|2682701_2683586_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_014652.1\|WP_013404372.1\|2683606_2685673_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_014652.1\|WP_013404381.1\|2696427_2697051_-\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_014652.1\|WP_013404377.1\|2690416_2691808_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_014652.1\|WP_013404376.1\|2689108_2690335_-\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_014652.1\|WP_013404379.1\|2693846_2695697_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404364.1\|2675882_2676239_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404368.1\|2678885_2679383_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_014652.1\|WP_013404367.1\|2677846_2678839_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_014652.1\|WP_013404380.1\|2696152_2696296_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404374.1\|2687574_2688528_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_014652.1\|WP_013404371.1\|2682701_2683586_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	2.7e-69	228.4	0.9
NC_014652.1\|WP_013404372.1\|2683606_2685673_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	2e-201	665.4	40.1
NC_014652.1\|WP_013404381.1\|2696427_2697051_-\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	1.8e-97	319.5	1.5
NC_014652.1\|WP_013404369.1\|2679411_2681835_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	4.8e-57	188.4	15.0
NC_014652.1\|WP_013404366.1\|2677577_2677841_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-29	95.2	0.8
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	4.3e-30	99.8	5.1
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	2.8e-62	205.4	2.6
NC_014652.1\|WP_013404376.1\|2689108_2690335_-\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	4.6e-22	72.9	2.2
NC_014652.1\|WP_013404370.1\|2681927_2682680_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	4.2e-33	109.2	0.1
NC_014652.1\|WP_013404368.1\|2678885_2679383_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	4.3e-53	174.5	1.9
NC_014652.1\|WP_013404367.1\|2677846_2678839_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	5.5e-135	444.3	14.4

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404378.1\|2692047_2693841_-\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	4.06551e-17
NC_014652.1\|WP_013404377.1\|2690416_2691808_-\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	8.13451e-34
NC_014652.1\|WP_013404368.1\|2678885_2679383_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.6971e-72
NC_014652.1\|WP_013404369.1\|2679411_2681835_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.75879e-46
NC_014652.1\|WP_013404370.1\|2681927_2682680_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.00459e-25
NC_014652.1\|WP_013404366.1\|2677577_2677841_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.57908e-32
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.07112e-53
NC_014652.1\|WP_013404371.1\|2682701_2683586_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.89422e-73
NC_014652.1\|WP_013404372.1\|2683606_2685673_-\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	2.17553e-159
NC_014652.1\|WP_013404376.1\|2689108_2690335_-\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.32122e-11
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	1.93485e-20
NC_014652.1\|WP_013404367.1\|2677846_2678839_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.79582e-159
NC_014652.1\|WP_013404374.1\|2687574_2688528_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.62993e-21

>NC_014652.1|WP_013404372.1|2683606_2685673_-|TIGR02556-family-CRISPR-associated-protein
MIEEIVEIGDVLIGDASGNDAYLSVLTEDIEVPSGDEKRYVAKIDFSTNEKKINIDCAEEIDDETAKKYVYVGSAEGANSSQWFASTTSFAYFLTETIPNLVECEIPVVSDICKKILDMYFVKVKEYLSKSSELIDEEKRYLQQKIEKKYVYFLDTDNIVVNDNKRLTEKPLSQIYKELINNAKSTDKIFKQLRDIFTKECTNGLKKLTELKPQQIGLYVLCVDGKPLTSYPEYIDAVIAYKRQVKKGTEKTKKKQKEGNICYICLDTDNLSFEGFKKTKFKYFTTNQNIFASYLDQKNYAKNITVCEKCLLKLVAGDIFLRNKLKTQLGSFDVYVLPTFVYTSAKLTKNYLEELSQNITNSLNTAWNYNSLEKLRDDIYNFLSYFDQNHYFLLNLIFYREAQASTKIIRFIPDINPSIFDKIYNAASKVFSQYTDLIGNDPSFKISLESIYYSVPIRLKNISESKESQRLLNIYDAIFSGKRIARDVLIENFIKAVGVVVYGKEGYNLSKFIGNDIASMVIRMVFVIRFLEILDCLEVKRGMDVAQLNLSDDLKSYIQQMNYDEPKTALFLLGVLIGEIGAKQYLATKDRQDDSAGHKPILNKINYNGIDKPKLIRLCNDVHNKLRQEKILPYTEMIFAEMKRLLDKHIDSWKLDKYETLFYILSGYAYKTQKVILNASSNSQDTSN
>NC_014652.1|WP_013404371.1|2682701_2683586_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MEKKIIDKNSEILFTYDAKLCNPNGDPDEENRPRMDWEKEINLVSDVRVKRYIRDYADDQGIPIYVRKIEGKSVKPEEVIKSVGEDIDELETFIDIRLFGATIPIKKETRTYIGPVQFNWGYSLNKVELLEASITSHFASDEKKQQGAIGKDYRVKYSFIAFSGIVSARRAKETRLTEDDLKFLDRAMKEAIPLQATRSKIGQYPRLYMRVEYVDDKTLLGDLRDYIKLIEVVEKPRKIEDVQLDITALVEFLHKNKDVISKIYYFKHPDLCLVCDGNVVDFKDAFGTFELEEV
>NC_014652.1|WP_013404370.1|2681927_2682680_-|CRISPR-associated-protein-Cas5
MKFLVFDLKGKFAHFRKFYTNSSSLSYLVPPRTVIEGMVAAILGFERDSYYEVLSAENLLIAVQKIERTYKIVQTVNYIKATTVNELKNPNTHTQVPLEILAGYNGFVGFRVFVMPKDEKIYSLLRARLESGKSEFPIYFGSAPFAAKTEFLGEFEACRWEDSRAGILTVLDAGLIKSLSLELESASSLALMKDRMPCDFDKDRFATKVKTYIHDENLNPIWVDLDSSAQDKVYYIKEFSGDRKECICVM
>NC_014652.1|WP_013404369.1|2679411_2681835_-|CRISPR-associated-helicase/endonuclease-Cas3
MEYYSHKNPDKLLYDHLLEVYHYAMEANVELKNWEKEALQIICLCHDFGKFTTFFQSHLSGVSSKHSQHGFLSAIFGVFCWMQKKGLCLQQMNPPASLDEVISLLIYACILHHHGDVKDISKNLPEKFKGDFKADINLVQKIDDAYVQIEDLRCNAEDIKPLLEKIGLGNEFEKFLAQQRGFIEDILRYLKRIEYGIRLIGVIPQAFKDGTELYFAQQKLYSLLIWADKMSAANYKLLFPCYASSDRLIVVRDKVIKPTQDKNLQRIRQSVFEAVLSNIEKNKEKDIFSITTPTGTGKTLAGVFAALKLKEILKKSGRIIYALPFTSIIDQNYHVVENLFEAIEDFEKNRDRYLLKHHHLTDVEYRGKEEALKEITDEITVFEKVASECFIENWTSGFVVTTFVQLLETLISNRNRMLKKFHTFYDSVLLLDEIQAIDVELLPLVEEVLRKLTQLFRCKIILMTATKPLIFEDACELAGFCDYSIFNRTKLMYHHSDLKVAEFVDFFLQEVYEDEKSFLIVANTINQSHQIYNGIKNNLKNKEVIYLSASLVPKDRKDIIKKIEKMLESGAKPIVVSTQVIEAGVDLDFDCVVRDIAPIDSIIQCAGRCNRHNEKSQGNVLVVNMKDESGITFAKRVYGNTAIEISRGLLLKHPEVEERDYGMLIDNYFRMIKENKSFKKSEEFLKAIRLLKFDSILEKEELTISRFSLIQQRGGYVSVIIRNNEEIEDAYQRYINSFSIKDYYKRREIYLELKNILFEYTISVPLKYAQIFDEEKGILSLPPTSCQRYYSSKTGFVYDPNDHIIFA
>NC_014652.1|WP_013404368.1|2678885_2679383_-|CRISPR-associated-protein-Cas4
MDIYMTGVYIWYYNICKRQVWLMAHSILPDENDDNIVLGRFLHEYYYRKDQKEIKFGNAVFDILYQDKDEIVIGETKKSSRFKEASRYQLLFYIKLLKEAGISAKGVLFYPEERKKEEVVLTAEEEEKLEKMIAEIETIIEKESPPPAATCRYCPKCAYREYCFA
>NC_014652.1|WP_013404367.1|2677846_2678839_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKDLYVFNSGFLRRKDNTIMFETDEGKKYFPVEEIESVFIFGEVDINKRFLEFMTEKNICVHFFNRYEYYVGTYYPREHYNSGIVILKQVEFYNDYNKRITIARSIVEGAVLNMLVVLRYYNSRGNMLKDEIETIERMRHNISACSDVNTLMALEGNIREIYYRCFNKILDDENFTFVRRSKNPPLDRINALISFGNSLLYATTLGEIYQTQLDPRIGYLHSTNQRKFSLNLDISEIFKPIIVDRVIFSLVNKKVLSEKHFEKELNGIILNDQGKKLFVSEYNQKLYSTIMHPKLNTQVSYKRLIRMEAYKLQKLFLENIEYKPFVARW
>NC_014652.1|WP_013404366.1|2677577_2677841_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDVNEKRVAKALKKCRQYLTWVQNSVFEGNISEGTLRRLILELERILDLSEDSVIIYKFQNTWYSERQIIGIEKNPVDFMT
>NC_014652.1|WP_013404365.1|2676238_2676433_+|hypothetical-protein
MYVIAVLIRDKRNEEKIYEMIEDAFSSDVVNDEILKKREKVLEEIKSIGEIEVYNYIQKYGVSM
>NC_014652.1|WP_013404364.1|2675882_2676239_+|hypothetical-protein
MKQDCKTIEDFGRVAFKLRFIDKKAAWNDIYEKTKDFDVIGYVKEHYIDYVEQNKNEIIGAIMENTVEPEKRDEMRETMRGWLDEAIRMVKNGEELYWMPERIFYDSVAVAMKKIGVK
>NC_014652.1|WP_013404363.1|2675218_2675800_+|hypothetical-protein
MKYFAKFRLREKIRVKKSFIRLIFTLVIMIISFIASFIAKADSSDPVSFIYDPVVYVGDELYRIKKDDLYNLSIRGLFDLLSQKNYISDLMTPSVLNKSDESSNDLYNLIAEKLSVKVFPFLNILEPSGNFLIQSELNTRNLSMGLSITEKADNTAIAKLGNLLSKALAAGSPLLEQVVSTIKLPYGIVPEGL
>NC_014652.1|WP_013404374.1|2687574_2688528_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MSSEIPPMEHDTTFKFLLKDKKELLVLVKDILRYSWADEIDEESIEFDDSEFVTQQLSQLRADIVAKAKLKGREVYFYILIENQSTVKRDMAQKILKYMVSLWWKELSKGAENLPPVIPIVVYNGTKEKWNLSTDLMEAFETFKDDVFRYRVVDVSEVDVKKILQEEKDLLTPIIFYLEQVREDRDELIRRLLEVEKNVEKLSNENVDRFLRWAYYIIRPRLLEEQKEEYERVAERVKQGGGKNMGEFISNVARLLDEARAKDFNLGLQQGLQQGIRESQIRIAKKMIQKGIRDEEIAELTELDIEEIKRLRKELLN
>NC_014652.1|WP_013404375.1|2688890_2689112_-|hypothetical-protein
MKKLSLKTLKPQAITKQVNVCGFFVKSQTKNHKIPQTATNSQRAGYKQSDYQDKILEVDGFNPQREDYKHVKA
>NC_014652.1|WP_013404376.1|2689108_2690335_-|CRISPR-associated-protein
MPKYSNIVMTGGISVFFSSEKKSNVFYEYFKEFYENKNSYKGQDLNKVLTEICKEKEITDEEIQRLVKEKPNQVSAEFSMLNGLKEKELLDDKFSVSIIHSDTPDGIMAALINKKVIELIFEGSTVFMAEVEDVDVSNEVKLQRSLGNFMQVVAKELLKGSKETTFFAPIGGYKYMTYLGYVAGALFGYPSGYMYEKDQKLLVVPPIPIEINFDLIAKNKNFIANLLKAGQLSYQELSEAEKEVVDTMPYFFEKIVVDGQEIVSPNAFAQFIFEDYINTTIKVSTEVKELINKNEQYKNFIHNQLMELIKKVKLYFKNYREYQGLKGELQHNETWGINKPYIYKGVSNGSKFVFRCAYDFDNINSVLSIYKIWLKHDEYEDDCEKIAKGKKMIDMDKNKLVEIDIEEE
>NC_014652.1|WP_013404377.1|2690416_2691808_-|ATP-binding-protein
MRRFINRSKELNFLEKQYREQNSSLVVIYGRRRIGKTALIKKFIQHKPAIYFLASEEAENQNIEYFKKAVSNFLKNPLIERLSGVGWDDIFDVIVNSKIGKKVVIVFDEFQNLCKTNPAFASVVQRIWDEKLKNHSFMLILSGSLVGMMQEHALSYSSPLYGRRTGQIKLKQFSFKEAKEFFPEVSEDQFIWIYSIVGGVPKYLEMFKFEGDIYKAIEENILSRQSFLYEEPVFLLEKEVHEVGSYFSIIKSIALGNHKLSQIAQSLSVAQTKLTKYLNTLMDLDIVRREVPITEEYPEKSKRGLYFINDNFIDFWFKFVYPYREQLELDNTKYVVENIKSKIVTNHISFVYEEICRQILMDLIKTKEIDIQLDRVGKWWDSKSEIDIVGIGKNTGHVVFGECKYSQNVIDIDVFFNLKKKAENVKVFPEKKELYILFSRTGFSERLLEFAKETKNLILIKFP
>NC_014652.1|WP_013404378.1|2692047_2693841_-|ATP-binding-protein
MFNTEIVGRMMKYDSDVYSRYRAEIWFAYTKKAMNEIKEGALLAVQNFSSTSDKIRYCILEITSVVPLHYGLDNDLSGYPGFLTEAAENIYRDWEEQEDEPLDDATKIKCLAIPTNFEIIIDSDQSISIGIESNLPMVGAEAFLLDEELTNRILNHDIDKSGDVIEIGHLIRDKNVKILLKVEELLRVHFGVFGFTGAGKSNLLSTLVRKILTESNLPVKIVIFDLMGEYSTLLIDLLVKLENSMIIGIGEKTFVGSLVSLMKADRNSPEYKELLKKATIDVVNSALYPKGLVGYKDLFKKAFYKILNSRKVKIWQSGDIAVADFARMHERTLLKGNLGKSEATVKKLYEQLLKKTNPLNANVCYALIQHIESKYLSDETLGSIARSNLELFINELKKRYEELKEFGFSNENVIDQKKLIDILNRPDDKALIIFQSHDPDELRNLAYQIGMAIFEDRRRSGKIDPVVSFIFDEADEFIPQDAKDSYERSSEVVMHLARRGRKFGLGIGIATQRITYLNTNIMAQPHTYFVSKLPRKSDQERITDAFGISEDMFKQTFKFKKGCWLLVSYDAIGLEAVPLPIYVQNANDAVLEFLRTL
>NC_014652.1|WP_013404379.1|2693846_2695697_-|hypothetical-protein
MSKLSQMYGYWKDSIKTSMKRYDENLEKSLKHLQDFYSRILKDYIIDWRKYFESQPFRHNLRQKIEGFFGKNEINFVAIDGTCIKDEGSNFITFFAGAYGARGKIIIKHEGEKIKYERWDFARDVTMMAHLPVYPYEIEFVANSHELNQMQFYSDKDVQEILNLHTSLMKLAEVYLAYHVVSSSTVDMPQIILLDLAPSTLLRVPYVNYKNTNYLGYKYLNDTIKLSDVIIALSHPYNKELGVPSKKKYRSYALLLSKLDEICSQNQKTFFTYKELAEICQLSIDDIKEIIKFLNATGVVEDDKVAGIKLLVNLSQRWNYLVSFFDYICNQIFVRKNPTALEFSNLSEKSNIKKLISHDDISFLISIGIRALIEKCWEKNVFLIGIVKDSKSRYFCRNFLNVLSSQNMLQIVEENFKTNNLQIAMSDRLVFENCAALSTELCAPWSSVEFDSAFTTLFVDRNNNITGVKGHIVSDDRIFAKSIAQFYLQRLKNQCKMGHAIFVERLLHPALDKQFLDVELVNNSKLGRISPFIHIDKNVINWGQAMNIYFLDVLTRNHFPEVIGYPEPLHKADRGAKTLLRFAKGIIQSSQQLYRKDPLNMTFRKFRDSLKFDDEE
>NC_014652.1|WP_013404380.1|2696152_2696296_-|hypothetical-protein
MSLSSLLGASIMLNGLAEGLKVFAIVVVLGFVIKGLWQGFIKALAKN
>NC_014652.1|WP_013404381.1|2696427_2697051_-|hypothetical-protein
MMGCDEKVAKYFTFHFWAREDGVFLPSSYYSKVYEALKSLLATEQFTISPIRTKNKKEVEDGIWVFEDFRIYLATPFLELVTQNILKIYESLNGLFDGIYLKRISCRTQQPKTSGNLLSGVFAQKDGACLEYDRQPEIFSEMLRRQLLSIYYQRFGAYPEDQRFFFVIKDGLKKQHVVPSRIEYFGRYEVFASTELLDMFCQMFCVK
>NC_014652.1|WP_013404382.1|2697047_2698214_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MATECFESRVYEIEVLTPTVIGGQDKIQSFEFVRDGDYLYFINFDRLLEENLFKESFVDELTRGLSGNLKDFNIRNVMTKYNIDFRRFSKYKLKLEGVQKLPREIVAFVKSAGRFYIPGSSFKGAIRSFVTKALRKDLIKHYEDCLNQKGKVDPQHLSSDADKKVFSSPNESPFKYLQISDSSFVNPDDAAVFEIKVMNICDGQVKWFAGVKEGKTNNVDNPEQSSSILAEGIKPGVKVFGSMKVEKDFVDGNEVVSGLKEKIGMNVSVVSPSEFLAEVMRAVAKDYIQREINFYSKYNQAQIVSEYHKLLNILNSLEPNQFLIQIGFSTGYLSKTVGIFFTKSHFEKLEKVGGLSRIYPELFPKTRRIIFKNGQVYTVPGWIKVTIR
>NC_014652.1|WP_013404383.1|2698203_2699214_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MGKGKLYRVLMHFTTPLHIGEKEKIYNITQTFAHSDTLMSGIINAYSLLYGNSSTNQLVESFLQKSLPFEISSTMPYVGNEFFVPKPIGLNLHLYKDKGIIEVEKDKEIKKVKFIREKDLLSNFPGKYKVAGSFLLPKDMLHKFDDSEKAPSLGKIKERARVSIDRLSSSSNIYYFSHFEFKDNAGLWFYLRINDQSLENKVKAAIRLLGDEGLGGDRTCGLGSFEAKFVESSMLEENDRAKYYMSLSLVNPQSEDEIKSALYYEILTRSGYIYSKAGLGIKRKAVRAFAEGTVFSGKVCGRVVDVTPQKFSQHRVYCFGLAFLVPLPEGVMMIGN

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Crispr_ID: NC_014652_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_4

2705174-2705533

TypeIII

Consensus_repeat	Method
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	PILER-CR
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	CRISPRCasFinder
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA	CRT

5 spacers

cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cmr3gr5,cmr5gr11,cmr4gr7

The CRISPR arrays of NC_014652_4

>merge|NC_014652|4|2705174-2705533|PILER-CR,CRISPRCasFinder,CRT
GTTTGTAGCCTCCCCTTTGGGGATTGAAACAAAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCAGTTTGTAGCCTCCCCTTTGGGGATTGAAACTAGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTTGTTTGTAGCCTCCCCTTTGGGGATTGAAACAACATTAATGAAGGTAATATAGAAATAGCTTTTGAGTTTGTAGCCTCCCCTTTGGGGATTGAAACAAAATACTATAGCAGAGCTCAGGCGATTGAAAGCTAGTTTGTAGCCTCCCCTTTGGGGATTGAAACACTTTTCACTTGCTCTTTCATATAATCTAATACAGTGTTTGTAGCCTCCCCTTTGGGGATTGAAACA

>NC_014652|4|2|2705174-2705532|PILER-CR
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AAAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	TAGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AACATTAATGAAGGTAATATAGAAATAGCTTTTGA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AAAATACTATAGCAGAGCTCAGGCGATTGAAAGCTA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	ACTTTTCACTTGCTCTTTCATATAATCTAATACAGT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC

>NC_014652|4|4|2705174-2705532|CRISPRCasFinder
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AAAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	TAGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AACATTAATGAAGGTAATATAGAAATAGCTTTTGA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	AAAATACTATAGCAGAGCTCAGGCGATTGAAAGCTA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC	ACTTTTCACTTGCTCTTTCATATAATCTAATACAGT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAC

>NC_014652|4|3|2705174-2705533|CRT
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA	AAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAACT	AGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTT
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA	ACATTAATGAAGGTAATATAGAAATAGCTTTTGA
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA	AAATACTATAGCAGAGCTCAGGCGATTGAAAGCTA
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA	CTTTTCACTTGCTCTTTCATATAATCTAATACAGT
GTTTGTAGCCTCCCCTTTGGGGATTGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404397.1\|2712347_2713160_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|110924
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NC_014652.1\|WP_013404389.1\|2706043_2707465_-\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_014652.1\|WP_013404386.1\|2700539_2703035_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_014652.1\|WP_013404392.1\|2709551_2709788_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_041723512.1\|2707596_2708694_-\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_014652.1\|WP_013404378.1\|2692047_2693841_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NC_014652.1\|WP_013404399.1\|2714088_2715003_-\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl\|CDD\|187857
NC_014652.1\|WP_013404381.1\|2696427_2697051_-\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_014652.1\|WP_013404396.1\|2711611_2712157_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404379.1\|2693846_2695697_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404398.1\|2713186_2713915_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NC_014652.1\|WP_013404387.1\|2703251_2704637_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_014652.1\|WP_013404401.1\|2715547_2716786_-\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_014652.1\|WP_013404402.1\|2716788_2719830_-\|CRISPR-associated-protein-Csx11	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|274257
NC_014652.1\|WP_013404400.1\|2714999_2715551_-\|hypothetical-protein	cmr5gr11	mkCas0117_cmr5gr11_CAS-III-C	gnl\|CDD\|370886
NC_014652.1\|WP_013404385.1\|2700097_2700508_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_014652.1\|WP_013404380.1\|2696152_2696296_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404384.1\|2699241_2700069_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_014652.1\|WP_013404381.1\|2696427_2697051_-\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	1.8e-97	319.5	1.5
NC_014652.1\|WP_013404385.1\|2700097_2700508_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	2.5e-38	125.9	0.7
NC_014652.1\|WP_013404399.1\|2714088_2715003_-\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	5.7e-72	237.2	2.3
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	4.3e-30	99.8	5.1
NC_014652.1\|WP_013404389.1\|2706043_2707465_-\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	9.3e-59	194.2	9.3
NC_014652.1\|WP_013404386.1\|2700539_2703035_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	6.3e-133	439.3	4.4
NC_014652.1\|WP_013404401.1\|2715547_2716786_-\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	5.2e-45	148.8	0.0
NC_014652.1\|WP_013404384.1\|2699241_2700069_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	1e-68	226.0	0.5
NC_014652.1\|WP_013404400.1\|2714999_2715551_-\|hypothetical-protein	cmr5gr11	mkCas0117_cmr5gr11_CAS-III-C	5e-81	265.5	23.2
NC_014652.1\|WP_013404402.1\|2716788_2719830_-\|CRISPR-associated-protein-Csx11	cas10	cd09701_cas10_CAS-III-C	2e-140	464.3	63.6
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	2.8e-62	205.4	2.6

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404397.1\|2712347_2713160_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|110924	pfam01972, SDH_sah, Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.	1.01343e-117
NC_014652.1\|WP_041723512.1\|2707596_2708694_-\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	1.4573e-146
NC_014652.1\|WP_013404389.1\|2706043_2707465_-\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	6.4339e-42
NC_014652.1\|WP_013404386.1\|2700539_2703035_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.60677e-110
NC_014652.1\|WP_013404402.1\|2716788_2719830_-\|CRISPR-associated-protein-Csx11	gnl\|CDD\|274257	TIGR02682, hypothetical_protein_MM_3356, CRISPR-associated protein, Csx11 family. Members of this uncommon, sporadically distributed protein family are large (>900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, M. barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense).	3.48513e-92
NC_014652.1\|WP_013404383.1\|2698203_2699214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.07112e-53
NC_014652.1\|WP_013404378.1\|2692047_2693841_-\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	4.06551e-17
NC_014652.1\|WP_013404399.1\|2714088_2715003_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	0.000214433
NC_014652.1\|WP_013404385.1\|2700097_2700508_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.16233e-33
NC_014652.1\|WP_013404382.1\|2697047_2698214_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	1.93485e-20
NC_014652.1\|WP_013404398.1\|2713186_2713915_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.94175e-34
NC_014652.1\|WP_013404387.1\|2703251_2704637_-\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.20011e-32
NC_014652.1\|WP_013404401.1\|2715547_2716786_-\|hypothetical-protein	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.28e-25
NC_014652.1\|WP_013404400.1\|2714999_2715551_-\|hypothetical-protein	gnl\|CDD\|370886	pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.	0.00161459
NC_014652.1\|WP_013404384.1\|2699241_2700069_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.63815e-77

>NC_014652.1|WP_013404387.1|2703251_2704637_-|ATP-binding-protein
MFVGRKYELETLNRLYNEDKFHFVVVYGRRRVGKTTLLTEFCKNKPSIFFVAEEYNDKISLESFSDKVLSYFNLGGLISQFESWEKAFIFLAQQAKDKRLVVVIDEFPYIVNANKSIPSLLQNLIDHHLKNTKLFLIVCGSSVSFIEKEVLSYKSPLYGRRTAQLIVEPFSFFESREFFPNYSFEDQVIAYGVLGGIPQYLIIIDSTKDIYENIKTKILDKSSYLYEEPKLLLRQEVREPALYNSIIEAIATGSSKLNEIATKVGVEVDKCAKYISVLIDLKILERVTPLFSEAKSRKSIYRIKDNFFRFWYRFVFTNKTLIEQGLIDEVVENKIKPSMNEFIGEVYEQICMDYLKVLNKEKRLPFIFENIGKWWGNNPYKKREEEIDIVAFDNDNILFGECKWRNQKVDMSVLNNLIEKSMIFNYSEKFYVLFSKSGFTDEVISFAKQNPHVLLISEFDI
>NC_014652.1|WP_013404386.1|2700539_2703035_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MIFYNAHQREEDKNFDYTLFLGAILHDIGKFYMRTENPDAKKNISREYEAFYREEGKYAPRHQEWSAFFAEHFLPESLKTVTSLVLYHHRPSSYQQLLISVADKISAKVDRKDLSEEEAADDKSKYLISVLSQISLDEKKRNTKTPYYKLLKKRYEVEPPSNSFNTNAKEDYQNLWAEFSRKVNALRDGFGSSFDLEDFATAIYNLLRIYTYNIPSAFYYSQPDISLWSHSKSTAAIAFCLDRQLKKEFSQENERVRVLEAINTKLLPGNESAIKKGDYPYFCLVKGDVSGIQDFVFDTKMDGALKALKAKSFYISFLLDTIARYILKEENMPICNLIYNGGGHFYLLMPGYFMGKLPQYQQKIDKILFSAHRGALSVLLEAAEVDLYDFAHNFGDCFDRVSRNIQRKKVCKFKDVIEESKMEFFEPWEDYEQKCPHCGRKIEPKEDNPDFCSFCESFVQLGDELMKSLFIIDSWGKEKEFSEFSDIHNVLKAFGRYVQFSNHYESVANTLILDRSRIEDLQRKQTEIEKGQKGPKSEFESEFYEDLDISTHVPFKSEDERVPMLIEDIAESAKGIKTWGIVRGDVDNLGDIFKKGLGEDNSISRVMTLSEEFSIFFGYYFNKLIKEQNGNIMVIYAGGDDFCILGQWDVLPQTAHKIYTEFRSFSCWNSDVTLSMGFEIAPDKKYPIYRVAMVCGEHLEQAKEYERENGKKKDCFAFGANFVGWEEFEDLKKLKESIADLVGNKNVSKALINGIYAVCSLKKMAQTQEELFKAWRFVYFMARLKERYSNPKDRIEKALDEVLWRIICKETNSLYKHSYLAARWAELELRR
>NC_014652.1|WP_013404385.1|2700097_2700508_-|type-III-A-CRISPR-associated-protein-Csm2
MPAQGGNNALALKNDILSKIETAIDPEKDKDGKAFSDVAEKTGQLLKESGVTITQIRKLFTEVKRLSPEDDNYKYKLKLLKAKLAYTAGRFKKMKHFQEIIDKALPVAEKSPEALNRFKDFFEAAVAYHKYFGGDQ
>NC_014652.1|WP_013404384.1|2699241_2700069_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MDVILKGKYIIKCKIKAVTGLHIGEGNNSIEIGGIDNAVVKDAEGKPYIPGSSLKGKMRSLMEFAEGKVKDDLMVVAVKKGDKPEICIHMCDDKECPVCGLFGRNHGKHVTKKEFLKDPKAEGRDFSDAVIPTRLIVRDAKLIESSITDEMKENLDLEWTEVKFENNIDRITSKANPRQSERVPAGAEFSAEFVVNRYEVDGSDDGQLYLSKFIKAMKLLEDDYLGGQGSRGNGKVKFVDIEIVYKDSSDYEKDSNDLKPIATAPSLDQLKLATK
>NC_014652.1|WP_013404383.1|2698203_2699214_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MGKGKLYRVLMHFTTPLHIGEKEKIYNITQTFAHSDTLMSGIINAYSLLYGNSSTNQLVESFLQKSLPFEISSTMPYVGNEFFVPKPIGLNLHLYKDKGIIEVEKDKEIKKVKFIREKDLLSNFPGKYKVAGSFLLPKDMLHKFDDSEKAPSLGKIKERARVSIDRLSSSSNIYYFSHFEFKDNAGLWFYLRINDQSLENKVKAAIRLLGDEGLGGDRTCGLGSFEAKFVESSMLEENDRAKYYMSLSLVNPQSEDEIKSALYYEILTRSGYIYSKAGLGIKRKAVRAFAEGTVFSGKVCGRVVDVTPQKFSQHRVYCFGLAFLVPLPEGVMMIGN
>NC_014652.1|WP_013404382.1|2697047_2698214_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MATECFESRVYEIEVLTPTVIGGQDKIQSFEFVRDGDYLYFINFDRLLEENLFKESFVDELTRGLSGNLKDFNIRNVMTKYNIDFRRFSKYKLKLEGVQKLPREIVAFVKSAGRFYIPGSSFKGAIRSFVTKALRKDLIKHYEDCLNQKGKVDPQHLSSDADKKVFSSPNESPFKYLQISDSSFVNPDDAAVFEIKVMNICDGQVKWFAGVKEGKTNNVDNPEQSSSILAEGIKPGVKVFGSMKVEKDFVDGNEVVSGLKEKIGMNVSVVSPSEFLAEVMRAVAKDYIQREINFYSKYNQAQIVSEYHKLLNILNSLEPNQFLIQIGFSTGYLSKTVGIFFTKSHFEKLEKVGGLSRIYPELFPKTRRIIFKNGQVYTVPGWIKVTIR
>NC_014652.1|WP_013404381.1|2696427_2697051_-|hypothetical-protein
MMGCDEKVAKYFTFHFWAREDGVFLPSSYYSKVYEALKSLLATEQFTISPIRTKNKKEVEDGIWVFEDFRIYLATPFLELVTQNILKIYESLNGLFDGIYLKRISCRTQQPKTSGNLLSGVFAQKDGACLEYDRQPEIFSEMLRRQLLSIYYQRFGAYPEDQRFFFVIKDGLKKQHVVPSRIEYFGRYEVFASTELLDMFCQMFCVK
>NC_014652.1|WP_013404380.1|2696152_2696296_-|hypothetical-protein
MSLSSLLGASIMLNGLAEGLKVFAIVVVLGFVIKGLWQGFIKALAKN
>NC_014652.1|WP_013404379.1|2693846_2695697_-|hypothetical-protein
MSKLSQMYGYWKDSIKTSMKRYDENLEKSLKHLQDFYSRILKDYIIDWRKYFESQPFRHNLRQKIEGFFGKNEINFVAIDGTCIKDEGSNFITFFAGAYGARGKIIIKHEGEKIKYERWDFARDVTMMAHLPVYPYEIEFVANSHELNQMQFYSDKDVQEILNLHTSLMKLAEVYLAYHVVSSSTVDMPQIILLDLAPSTLLRVPYVNYKNTNYLGYKYLNDTIKLSDVIIALSHPYNKELGVPSKKKYRSYALLLSKLDEICSQNQKTFFTYKELAEICQLSIDDIKEIIKFLNATGVVEDDKVAGIKLLVNLSQRWNYLVSFFDYICNQIFVRKNPTALEFSNLSEKSNIKKLISHDDISFLISIGIRALIEKCWEKNVFLIGIVKDSKSRYFCRNFLNVLSSQNMLQIVEENFKTNNLQIAMSDRLVFENCAALSTELCAPWSSVEFDSAFTTLFVDRNNNITGVKGHIVSDDRIFAKSIAQFYLQRLKNQCKMGHAIFVERLLHPALDKQFLDVELVNNSKLGRISPFIHIDKNVINWGQAMNIYFLDVLTRNHFPEVIGYPEPLHKADRGAKTLLRFAKGIIQSSQQLYRKDPLNMTFRKFRDSLKFDDEE
>NC_014652.1|WP_013404378.1|2692047_2693841_-|ATP-binding-protein
MFNTEIVGRMMKYDSDVYSRYRAEIWFAYTKKAMNEIKEGALLAVQNFSSTSDKIRYCILEITSVVPLHYGLDNDLSGYPGFLTEAAENIYRDWEEQEDEPLDDATKIKCLAIPTNFEIIIDSDQSISIGIESNLPMVGAEAFLLDEELTNRILNHDIDKSGDVIEIGHLIRDKNVKILLKVEELLRVHFGVFGFTGAGKSNLLSTLVRKILTESNLPVKIVIFDLMGEYSTLLIDLLVKLENSMIIGIGEKTFVGSLVSLMKADRNSPEYKELLKKATIDVVNSALYPKGLVGYKDLFKKAFYKILNSRKVKIWQSGDIAVADFARMHERTLLKGNLGKSEATVKKLYEQLLKKTNPLNANVCYALIQHIESKYLSDETLGSIARSNLELFINELKKRYEELKEFGFSNENVIDQKKLIDILNRPDDKALIIFQSHDPDELRNLAYQIGMAIFEDRRRSGKIDPVVSFIFDEADEFIPQDAKDSYERSSEVVMHLARRGRKFGLGIGIATQRITYLNTNIMAQPHTYFVSKLPRKSDQERITDAFGISEDMFKQTFKFKKGCWLLVSYDAIGLEAVPLPIYVQNANDAVLEFLRTL
>NC_014652.1|WP_013404389.1|2706043_2707465_-|TIGR01897-family-CRISPR-associated-protein
MKVIYQVGRLDNPAIATKKFYIKNFNGEIVEESGESELSSTVLRDFLRKRGCEAKTVVIYPVSIVLNSRLPEYIQPANLKEELAAIFKDPSDYLKNPDEFIDRIDLERCRDEKLIVHSLGEYMETFLDASYDDIVLEILFDMIERYLKGELEDLYLDISSGHNIYISAILEAARHFAVFSNLMNWLDESKVPKICITFSDPIIGSSAKSFEIHIQQQRFTAFFSSPIKRKEAAEYNFSFLRNIYPDPENNGTKGQEAAKLKQQVREKRKKLREKIEMFCLLFSAIKNNVPLYLYYQHYHSVDEIKEEIFKLIEHAKGQLCSDYQKSPNLNKRAYIDAILSLGFYIGIVNVLEKHNITMFCQDTGIDLDLLKRDFFEIYSTFRVPTNYVMLSNEISNTQKILEQMDDIGSWTGLYKIIDPGKPVGEPIDRNYFAHSGFERNITEIRTEGSTIFVRYAFNTNFNVINCWLKDRIE
>NC_014652.1|WP_041723512.1|2707596_2708694_-|DUF1848-domain-containing-protein
MIISASRRTDIPAFYGDWFINRIKEGFAMYRNPMRLTQVFAVSLHPKDVDAIVFWTKNPKNFLDKLKYLEEYTYYFQFTITPYGKDIEPGIPSKDEVIETFIELSNMIGKKRVIWRYDPIIITDKMDLEYHKEKFEELCEKLSPYTQKCIISYVDFYSKAVDELNRINAKDLAAEELYNLFGAMGSIGKKYNLSVETCAEDLPVEELGLKKAHCVDGELILQLKREKDPYWTASFKKDKNQRQACGCVQSIDLGIFNTCKHFCTYCYANFSRNSILKNAKKYDVNSPLLCSRLDLEKDEIRIREKDGSIKLDKEAILKAEANQKELMTQLDFYEYEKISLEDNSNNWLVEKILDYLKKTKQGTLL
>NC_014652.1|WP_013404392.1|2709551_2709788_+|hypothetical-protein
MVYEVTYNNSRLVFEGKEINYFKILEALDKLRDLRDYIELFYTEYSGLPLTSLPYDVLLDIFTNYLDFIGVQIKVIGR
>NC_014652.1|WP_013404396.1|2711611_2712157_+|hypothetical-protein
MQRKSLLEKLSSIRFRQYVLQEEGLNSWWDFRMPIEDDYTTLFELIKSIKRARLVFKALMACKRYFRIIPSKKGLCLVYRFSILSTAKNPELPVDINQPTEIIEYNGIKWFVEEFGSLIVIGEVDVNKVKRIVEKLEENWKKRYPKIREREIKKYIDSIKNENIEEMQKMWDSFVDVVNGD
>NC_014652.1|WP_013404397.1|2712347_2713160_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSFWDLLIFFIIASSLQPVMKQRMLESARQKLIAKIEKKRGSRVILLVHRQETMSFLGFPIYKYIDINDSEEVIRAINMTDPSIPLDIILHTPGGLVLASTQIARAIKRHKGKVTVHVPHYAMSGGTLIALAADEIVMSEDAVLGPVDPQIGEFPAVSILEVVKQKTLNEIDDKTLILADIAKKAIKQTKEVVLELLSGNYPDDVAQNIAKELVEGKYTHDFPITYEKAKELGLKVSCCIDKEIKQLMCLYPQPVSKKPSVEYLWEPKRQ
>NC_014652.1|WP_013404398.1|2713186_2713915_-|rhomboid-family-intramembrane-serine-protease
MIPLKDTIPSREKPFMTWFIIIINVLVFLFQVSIPPEATQELVYRYGFIPEKFSRALSNGLITGIIYSIWPIICSMFMHGSWMHLISNMWSLWLFGDNVEDRVGHFKFLIFYLLSGFAAAYTHWFFNAHSLVAVVGASGAIAGVMGAYFLMFPLSSIVTLIPIGFIPLFVNIPAVFYLGLWFLSQVSSGILELFGPVFGSGIAWWAHIGGFVFGALTVNFFKKKYRRYNNFFDDEIFYYRYY
>NC_014652.1|WP_013404399.1|2714088_2715003_-|hypothetical-protein
MKWYRLIFSQAQPIHIGSFIWGVVNETAAFIPGWTMWGALTNTYLRFNKFKDIEKSKEFFTKITNFYPAKACSKNEDKNQILSSLKCLFPKYEKGEFGFVEVPISEFDEDNNNFVSLDEFRFEFVDVIVSTAVEPVNRKAKDESLHEFEFILPKSKIDNCSLYWIGLIGFEDKEEYNEDLLKRYFSTLFVGGDIKYGYGKLELFDVQEIKKEEDLNSWNIKQDGRANIALESPLKQYVKFSGQECFEGEIKLIAEFDFSKNISEVSRASYYINIGSKIVSNMQSKNGDYNYLGNYFLYKGMLKP
>NC_014652.1|WP_013404400.1|2714999_2715551_-|hypothetical-protein
MSEDYMLEHTINKIAFELVNEKILDENEINKLLGVLCNDGVYAMWVYALDKLKGSNRNHKTGVEVPKIIKLSSKIEKVSNYIKNGSLEKVSELTEEINSLANEINNLQNDLEQLQGDERNKKAEEKRQKEKEKLKKEEEIKEKINQYFLDLANNLENLLFFKELFEKILIYARYHAKAMEDSK
>NC_014652.1|WP_013404401.1|2715547_2716786_-|hypothetical-protein
MEKKINKWDIEYTVYGIAMDPIYIGTGGYTIGRVDNTIVRDPITKLPKIPGSSLAGTWRYYTVLELLSKIKDRQPDMNTVKSIEKPTVVEKIKEWIEKNSNEWNSLTGWYSFNGNVVAKITCAGQDNTPQEELSNSPYTEDKEGKTGHCGHCIVCKGFGFSKKDFSWQGMIYFSDLHILFFPVFTLYGTKWITTEEVLKCAGLFKKLGDNASDQSQSSGQQFFRVLIQNEEKEAQAEKSEKEYINLGWMYLPCTRESFSIDLEKVKFENFELKPENVVIVPEKLFSQIVNSNLEVRTSVSINPITGAAKEGALFTSEAIPRGTIFYGDLRIFDKSAFAELESKAGELPSSCALIEALSESKHFFETLGIGGMTTRGFGRLKLELKRKETEDDKNTSIQSTEDSKTVSGGEQR
>NC_014652.1|WP_013404402.1|2716788_2719830_-|CRISPR-associated-protein-Csx11
MAGLNLKNLKVYRNEILKAEIISLLALWDKIDPAKINKANVQLAKASLDCWKNDIENNEIKILGETINLWDHFLNNWRKWRKRNDKKYFLQVLYGIGESLNSGIDKGAPKDSVKVEPQDGRWLSNSFGSFRSNIIYLLREEKDINSIIGKIEKYIKNLFDTEEIKNWNELKLIKEKFEEKVEKFFCGLLSDDRFPVNDVSLWDQAYMATAMFKASLSEYILKNNCISAIPQQSEVKWRILGVQYDKLGLAEKGYKPQQIQWYREISKEIDDEIKTLLEYEYPIGNEIYRDETGIYFLVGEGLGEDLKDNSNLAKLKNELKGIEDKIIDIFKRKSFEEFYPAIFLTKASRGLMNLSYLIEKAKENFLKADWSKKKIDICLEKSESGRAIGICQICRQRLVFKSDIEEKDKNICSTCYENKTQGRIKKWFENLSGETIWMDELKDKNGRVALVTMKFELRDWLNGDMLNSLVLQKGINFLGDIKSLKKDLTDIYIINQDKEVQNSILKNYTDKALHGRKVKNDKIVEAFLLERSIGDRWEEFICKKLDDWDIEKNQPSKKKIDFDKRKIFWQNLTDEDINFLSTLILQFLLRKNPSPARLRRIWETTEEFFKDIKENICQYANIPEERCKRYYWENIDIKDGEYRDKDVVFWADDKNVYLISYVCNLQEKEEFKIKTSSNKDIILKIQSAKAINYLPCMSILDPTPISWQFIIPAEYVPNLIDSVMKKYEEYFKFVYGKLPLHIGVIVQDYKQPLYVGIKALRKIRRDIDDCGKLEVKIEGRVIKEKINANLRQEEKDNTTTAHYSLYWGDFNNLGYNFFIKPDDHYKKWIDSIDNIDDNTKIIVMPNTFDFEFLDKTTRRNEIYYDRNNKWKRKIPLKNSRPYDLETWEKFKKFRELFGKENKTKIARSTRLQKLISVIYSKLEDLENYKLPAHDKADIDVDNESINIFLSASFINILKLKEDRELAEGIKELFEIKNEENENLFSLLKERMTLENLQLFIDMYNFWHKALEEV

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Crispr_ID: NC_014652_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_5

2722390-2725707

TypeIII

I-A

Consensus_repeat	Method
GTTTACATCCCTCATAGTTCAGATAAAAC	PILER-CR
GTTTACATCCCTCATAGTTCAGATAAAAC	CRISPRCasFinder
GTTTACATCCCTCATAGTTCAGATAAAAC	CRT

50 spacers

cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,csx20

The CRISPR arrays of NC_014652_5

>merge|NC_014652|5|2722390-2725707|PILER-CR,CRISPRCasFinder,CRT
GTTTACATCCCTCATAGTTCAGATAAAACCCTAAGTCTTTTCAAACGATAAGCAACCGTATCTTCGTTTACATCCCTCATAGTTCAGATAAAACTGGTAGTTGTGAAGCTATGCATAGACTGCAAGCACTGCGTTTACATCCCTCATAGTTCAGATAAAACCGTTGGCAGAGATGAGAACGGTAAACGTCGACAAAAAGTTTACATCCCTCATAGTTCAGATAAAACTTACGTCCTCTGCAGGTATTCTCAAGACCTCACCGTTGTTTACATCCCTCATAGTTCAGATAAAACTTTGTCTCTGTAAATAAATCCTTTGTCTAATAGCCACGTTTACATCCCTCATAGTTCAGACAAAACTCGTCATCAACAACAAACTCAAATGTCAGCAACTGGTTTACATCCCTCATAGTTCAGATAAAACACAACACTACCAGAAGGTGCAGAAATCAAATTTTACAGTTTACATCCCTCATAGTTCAGATAAAACCCATGCCTTCTATGAGAATTGGAATAGCTTGTGCTGCGTTTACATCCCTCATAGTTCAGATAAAACTGCTAACTGAAAACGGAGAGGTAAAGCTGTATGATGTCGTTTACATCCCTCATAGTTCAGATAAAACCATAGCAGTCGCACAGGCAATCACTGGACTGATACAGTTTACATCCCTCATAGTTCAGATAAAACTTTGGCGAAAGTTGTTCCAGCAAGCGGTGCGGTTATGTTTACATCCCTCATAGTTCAGATAAAACTAGCCTTGTATCACTCAGAACTGGTCAAAACAATGCAGTTTACATCCCTCATAGTTCAGATAAAACTCATCCATCTTAGCCTTCATGGATGGATGGAACATACGTTTACATCCCTCATAGTTCAGATAAAACTGCGCATGTATTAGCAAGAGCAATAAATAGATTTGGTTTACATCCCTCATAGTTCAGATAAAACCAATGCCTGTGCTTGAGCTTATAAATACAACAAATCAGTTTACATCCCTCATAGTTCAGATAAAACTGGAGTCTACAGAAAAGCAGGAACTAAAGCAATAGGGCGTTTACATCCCTCATAGTTCAGATAAAACCAGACTTTGCGATATGCAGCTCAGCTACACAGATTTGTTTACATCCCTCATAGTTCAGATAAAACTCAATTAAGAACATGGACAGCTAATTATGAAGTATTAGTTTACATCCCTCATAGTTCAGATAAAACGAGAAGAGTATGTGATTACTTATAACTTTTTCCCTGTGTTTACATCCCTCATAGTTCAGATAAAACTAAGTCTGCCGTCTTTAATCATGTTATATACTGATGTTTACATCCCTCATAGTTCAGATAAAACTGATAAACAAGTTAAAACAAGGAGTGAAATTCAATCAGTTTACATCCCTCATAGTTCAGATAAAACCTGCTGCATGAATGCCGTTGCGGTTTAACGTCCCGTCGTTTACATCCCTCATAGTTCAGATAAAACATAGAAATAAGCAGAACAGAATATAAAGCTTTGAAAGTTTACATCCCTCATAGTTCAGATAAAACATATTACATTAACTATAGACAGTTACAATTTTTCTAAGTTTACATCCCTCATAGTTCAGATAAAACCTGTTCATATCGTTGCAGCCTTTCAAGTTCGCTACTGTTTACATCCCTCATAGTTCAGATAAAACGAGGTGAGGCAAAATGACATAAAAAAATAAGCCCGCGTTTACATCCCTCATAGTTCAGATAAAACTAAAACAATTTGTATATTTGTGAGATATAAATTGTAATGTTTACATCCCTCATAGTTCAGATAAAACACTTCAGCATCTAAAAGGAATTCAGCTTCTGTAAACTTGTTTACATCCCTCATAGTTCAGATAAAACCACGGACGATGACTATGAAAACATAGCTTTATATCTTTGTTTACATCCCTCATAGTTCAGATAAAACTCTACGCTGCAAATGCGATTGGCGATGACACTACTCGTTTACATCCCTCATAGTTCAGATAAAACCCAAATCAAAGAAGAAAGCATTGCTGAACTAAGTAGGTTTACATCCCTCATAGTTCAGATAAAACAAGGATTAAACGCTGTTTTAGCGCTCACTTCTGAACAGTTTACATCCCTCATAGTTCAGATAAAACAGACGCACCAAGACTTTTAAACAACACTTCAATGTTGTTTACATCCCTCATAGTTCAGATAAAACCTCCAAAGAAGTTCGCAAGTTTTATCTTGATGTCATCGTTTACATCCCTCATAGTTCAGATAAAACAAAGAAATAAAGAAAGCAGTTGAAAAGTTAACAAATAGTTTACATCCCTCATAGTTCAGATAAAACTTATAAATACTTTATTGACATAAGAATGGGGGCAAAGCGTTTACATCCCTCATAGTTCAGATAAAACACAGGACAGAAATCGAAACTGTGTTTAAAAAAGCAGGTTTACATCCCTCATAGTTCAGATAAAACTGCCTTTTGATGTTAAACATGACGCAGTAGAACCTTTGTTTACATCCCTCATAGTTCAGATAAAACCCATGATTGCTTTGCCAAATTTGCCTGTTTCGAAGCGGTTTACATCCCTCATAGTTCAGATAAAACACGCAAGTAGCGCAACAATATATGATATACACCGCGTTTACATCCCTCATAGTTCAGATAAAACTAAAAATTGAAGTGAAGGGCATACAAGAAACAGTTGATGTTTACATCCCTCATAGTTCAGATAAAACCTTTGTCTTCTCTGTACTTGTATGTTTGAATTTCTTTGAGTTTACATCCCTCATAGTTCAGATAAAACTTTCCTTTTTCACTGCCGTTTGATGTTGCGTATTTGGTGTTTACATCCCTCATAGTTCAGATAAAACCGCTGAAAATTGAATACCTAAAGCATCTGCAGCTTTTTGTTTACATCCCTCATAGTTCAGATAAAACATACCAGCTCTGTTTAAAGGTGTCCAGTCAATGCTAGTTTACATCCCTCATAGTTCAGATAAAACTGCTTGGTACTACTAATCAGGATATTAATTTTATCAGTTTACATCCCTCATAGTTCAGATAAAACCGGAAATGAATATAATTAATCCAAATCTAAAATTCAAGTTTACATCCCTCATAGTTCAGATAAAACGCCGCCGATGGTGCCGTGTCGCTGTAACAATGTGTCAGTTTACATCCCTCATAGTTCAGATAAAACTGAAATACACAACAAATTATAATCTTAAAAAGCCTGGTTTACATCCCTCATAGTTCAGATAAAACTGGGAACACTTCAAACAAGCTTACAACACAGCATATGTTTACATCCCTCATAGTTCAGATAAAAC

>NC_014652|5|3|2722390-2725707|PILER-CR
GTTTACATCCCTCATAGTTCAGATAAAAC	CCTAAGTCTTTTCAAACGATAAGCAACCGTATCTTC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGTAGTTGTGAAGCTATGCATAGACTGCAAGCACTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CGTTGGCAGAGATGAGAACGGTAAACGTCGACAAAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTACGTCCTCTGCAGGTATTCTCAAGACCTCACCGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGTCTCTGTAAATAAATCCTTTGTCTAATAGCCAC
GTTTACATCCCTCATAGTTCAGACAAAAC	TCGTCATCAACAACAAACTCAAATGTCAGCAACTG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAACACTACCAGAAGGTGCAGAAATCAAATTTTACA
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGCCTTCTATGAGAATTGGAATAGCTTGTGCTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTAACTGAAAACGGAGAGGTAAAGCTGTATGATGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CATAGCAGTCGCACAGGCAATCACTGGACTGATACA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGGCGAAAGTTGTTCCAGCAAGCGGTGCGGTTAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAGCCTTGTATCACTCAGAACTGGTCAAAACAATGCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TCATCCATCTTAGCCTTCATGGATGGATGGAACATAC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCGCATGTATTAGCAAGAGCAATAAATAGATTTG
GTTTACATCCCTCATAGTTCAGATAAAAC	CAATGCCTGTGCTTGAGCTTATAAATACAACAAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGAGTCTACAGAAAAGCAGGAACTAAAGCAATAGGGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CAGACTTTGCGATATGCAGCTCAGCTACACAGATTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCAATTAAGAACATGGACAGCTAATTATGAAGTATTA
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGAAGAGTATGTGATTACTTATAACTTTTTCCCTGT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAGTCTGCCGTCTTTAATCATGTTATATACTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TGATAAACAAGTTAAAACAAGGAGTGAAATTCAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGCTGCATGAATGCCGTTGCGGTTTAACGTCCCGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	ATAGAAATAAGCAGAACAGAATATAAAGCTTTGAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	ATATTACATTAACTATAGACAGTTACAATTTTTCTAA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGTTCATATCGTTGCAGCCTTTCAAGTTCGCTACT
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGGTGAGGCAAAATGACATAAAAAAATAAGCCCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAACAATTTGTATATTTGTGAGATATAAATTGTAAT
GTTTACATCCCTCATAGTTCAGATAAAAC	ACTTCAGCATCTAAAAGGAATTCAGCTTCTGTAAACTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CACGGACGATGACTATGAAAACATAGCTTTATATCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCTACGCTGCAAATGCGATTGGCGATGACACTACTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CCAAATCAAAGAAGAAAGCATTGCTGAACTAAGTAG
GTTTACATCCCTCATAGTTCAGATAAAAC	AAGGATTAAACGCTGTTTTAGCGCTCACTTCTGAACA
GTTTACATCCCTCATAGTTCAGATAAAAC	AGACGCACCAAGACTTTTAAACAACACTTCAATGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTCCAAAGAAGTTCGCAAGTTTTATCTTGATGTCATC
GTTTACATCCCTCATAGTTCAGATAAAAC	AAAGAAATAAAGAAAGCAGTTGAAAAGTTAACAAATA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTATAAATACTTTATTGACATAAGAATGGGGGCAAAGC
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAGGACAGAAATCGAAACTGTGTTTAAAAAAGCAG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCCTTTTGATGTTAAACATGACGCAGTAGAACCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGATTGCTTTGCCAAATTTGCCTGTTTCGAAGCG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACGCAAGTAGCGCAACAATATATGATATACACCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAAATTGAAGTGAAGGGCATACAAGAAACAGTTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTTTGTCTTCTCTGTACTTGTATGTTTGAATTTCTTTGA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTCCTTTTTCACTGCCGTTTGATGTTGCGTATTTGGT
GTTTACATCCCTCATAGTTCAGATAAAAC	CGCTGAAAATTGAATACCTAAAGCATCTGCAGCTTTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	ATACCAGCTCTGTTTAAAGGTGTCCAGTCAATGCTA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTTGGTACTACTAATCAGGATATTAATTTTATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CGGAAATGAATATAATTAATCCAAATCTAAAATTCAA
GTTTACATCCCTCATAGTTCAGATAAAAC	GCCGCCGATGGTGCCGTGTCGCTGTAACAATGTGTCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGAAATACACAACAAATTATAATCTTAAAAAGCCTG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGGAACACTTCAAACAAGCTTACAACACAGCATAT
GTTTACATCCCTCATAGTTCAGATAAAAC

>NC_014652|5|5|2722390-2725707|CRISPRCasFinder
GTTTACATCCCTCATAGTTCAGATAAAAC	CCTAAGTCTTTTCAAACGATAAGCAACCGTATCTTC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGTAGTTGTGAAGCTATGCATAGACTGCAAGCACTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CGTTGGCAGAGATGAGAACGGTAAACGTCGACAAAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTACGTCCTCTGCAGGTATTCTCAAGACCTCACCGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGTCTCTGTAAATAAATCCTTTGTCTAATAGCCAC
GTTTACATCCCTCATAGTTCAGACAAAAC	TCGTCATCAACAACAAACTCAAATGTCAGCAACTG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAACACTACCAGAAGGTGCAGAAATCAAATTTTACA
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGCCTTCTATGAGAATTGGAATAGCTTGTGCTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTAACTGAAAACGGAGAGGTAAAGCTGTATGATGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CATAGCAGTCGCACAGGCAATCACTGGACTGATACA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGGCGAAAGTTGTTCCAGCAAGCGGTGCGGTTAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAGCCTTGTATCACTCAGAACTGGTCAAAACAATGCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TCATCCATCTTAGCCTTCATGGATGGATGGAACATAC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCGCATGTATTAGCAAGAGCAATAAATAGATTTG
GTTTACATCCCTCATAGTTCAGATAAAAC	CAATGCCTGTGCTTGAGCTTATAAATACAACAAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGAGTCTACAGAAAAGCAGGAACTAAAGCAATAGGGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CAGACTTTGCGATATGCAGCTCAGCTACACAGATTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCAATTAAGAACATGGACAGCTAATTATGAAGTATTA
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGAAGAGTATGTGATTACTTATAACTTTTTCCCTGT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAGTCTGCCGTCTTTAATCATGTTATATACTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TGATAAACAAGTTAAAACAAGGAGTGAAATTCAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGCTGCATGAATGCCGTTGCGGTTTAACGTCCCGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	ATAGAAATAAGCAGAACAGAATATAAAGCTTTGAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	ATATTACATTAACTATAGACAGTTACAATTTTTCTAA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGTTCATATCGTTGCAGCCTTTCAAGTTCGCTACT
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGGTGAGGCAAAATGACATAAAAAAATAAGCCCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAACAATTTGTATATTTGTGAGATATAAATTGTAAT
GTTTACATCCCTCATAGTTCAGATAAAAC	ACTTCAGCATCTAAAAGGAATTCAGCTTCTGTAAACTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CACGGACGATGACTATGAAAACATAGCTTTATATCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCTACGCTGCAAATGCGATTGGCGATGACACTACTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CCAAATCAAAGAAGAAAGCATTGCTGAACTAAGTAG
GTTTACATCCCTCATAGTTCAGATAAAAC	AAGGATTAAACGCTGTTTTAGCGCTCACTTCTGAACA
GTTTACATCCCTCATAGTTCAGATAAAAC	AGACGCACCAAGACTTTTAAACAACACTTCAATGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTCCAAAGAAGTTCGCAAGTTTTATCTTGATGTCATC
GTTTACATCCCTCATAGTTCAGATAAAAC	AAAGAAATAAAGAAAGCAGTTGAAAAGTTAACAAATA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTATAAATACTTTATTGACATAAGAATGGGGGCAAAGC
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAGGACAGAAATCGAAACTGTGTTTAAAAAAGCAG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCCTTTTGATGTTAAACATGACGCAGTAGAACCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGATTGCTTTGCCAAATTTGCCTGTTTCGAAGCG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACGCAAGTAGCGCAACAATATATGATATACACCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAAATTGAAGTGAAGGGCATACAAGAAACAGTTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTTTGTCTTCTCTGTACTTGTATGTTTGAATTTCTTTGA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTCCTTTTTCACTGCCGTTTGATGTTGCGTATTTGGT
GTTTACATCCCTCATAGTTCAGATAAAAC	CGCTGAAAATTGAATACCTAAAGCATCTGCAGCTTTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	ATACCAGCTCTGTTTAAAGGTGTCCAGTCAATGCTA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTTGGTACTACTAATCAGGATATTAATTTTATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CGGAAATGAATATAATTAATCCAAATCTAAAATTCAA
GTTTACATCCCTCATAGTTCAGATAAAAC	GCCGCCGATGGTGCCGTGTCGCTGTAACAATGTGTCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGAAATACACAACAAATTATAATCTTAAAAAGCCTG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGGAACACTTCAAACAAGCTTACAACACAGCATAT
GTTTACATCCCTCATAGTTCAGATAAAAC

>NC_014652|5|4|2722390-2725707|CRT
GTTTACATCCCTCATAGTTCAGATAAAAC	CCTAAGTCTTTTCAAACGATAAGCAACCGTATCTTC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGTAGTTGTGAAGCTATGCATAGACTGCAAGCACTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CGTTGGCAGAGATGAGAACGGTAAACGTCGACAAAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTACGTCCTCTGCAGGTATTCTCAAGACCTCACCGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGTCTCTGTAAATAAATCCTTTGTCTAATAGCCAC
GTTTACATCCCTCATAGTTCAGACAAAAC	TCGTCATCAACAACAAACTCAAATGTCAGCAACTG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAACACTACCAGAAGGTGCAGAAATCAAATTTTACA
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGCCTTCTATGAGAATTGGAATAGCTTGTGCTGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTAACTGAAAACGGAGAGGTAAAGCTGTATGATGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CATAGCAGTCGCACAGGCAATCACTGGACTGATACA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTGGCGAAAGTTGTTCCAGCAAGCGGTGCGGTTAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAGCCTTGTATCACTCAGAACTGGTCAAAACAATGCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TCATCCATCTTAGCCTTCATGGATGGATGGAACATAC
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCGCATGTATTAGCAAGAGCAATAAATAGATTTG
GTTTACATCCCTCATAGTTCAGATAAAAC	CAATGCCTGTGCTTGAGCTTATAAATACAACAAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGAGTCTACAGAAAAGCAGGAACTAAAGCAATAGGGC
GTTTACATCCCTCATAGTTCAGATAAAAC	CAGACTTTGCGATATGCAGCTCAGCTACACAGATTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCAATTAAGAACATGGACAGCTAATTATGAAGTATTA
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGAAGAGTATGTGATTACTTATAACTTTTTCCCTGT
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAGTCTGCCGTCTTTAATCATGTTATATACTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	TGATAAACAAGTTAAAACAAGGAGTGAAATTCAATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGCTGCATGAATGCCGTTGCGGTTTAACGTCCCGTC
GTTTACATCCCTCATAGTTCAGATAAAAC	ATAGAAATAAGCAGAACAGAATATAAAGCTTTGAAA
GTTTACATCCCTCATAGTTCAGATAAAAC	ATATTACATTAACTATAGACAGTTACAATTTTTCTAA
GTTTACATCCCTCATAGTTCAGATAAAAC	CTGTTCATATCGTTGCAGCCTTTCAAGTTCGCTACT
GTTTACATCCCTCATAGTTCAGATAAAAC	GAGGTGAGGCAAAATGACATAAAAAAATAAGCCCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAACAATTTGTATATTTGTGAGATATAAATTGTAAT
GTTTACATCCCTCATAGTTCAGATAAAAC	ACTTCAGCATCTAAAAGGAATTCAGCTTCTGTAAACTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CACGGACGATGACTATGAAAACATAGCTTTATATCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	TCTACGCTGCAAATGCGATTGGCGATGACACTACTC
GTTTACATCCCTCATAGTTCAGATAAAAC	CCAAATCAAAGAAGAAAGCATTGCTGAACTAAGTAG
GTTTACATCCCTCATAGTTCAGATAAAAC	AAGGATTAAACGCTGTTTTAGCGCTCACTTCTGAACA
GTTTACATCCCTCATAGTTCAGATAAAAC	AGACGCACCAAGACTTTTAAACAACACTTCAATGTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTCCAAAGAAGTTCGCAAGTTTTATCTTGATGTCATC
GTTTACATCCCTCATAGTTCAGATAAAAC	AAAGAAATAAAGAAAGCAGTTGAAAAGTTAACAAATA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTATAAATACTTTATTGACATAAGAATGGGGGCAAAGC
GTTTACATCCCTCATAGTTCAGATAAAAC	ACAGGACAGAAATCGAAACTGTGTTTAAAAAAGCAG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCCTTTTGATGTTAAACATGACGCAGTAGAACCTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	CCATGATTGCTTTGCCAAATTTGCCTGTTTCGAAGCG
GTTTACATCCCTCATAGTTCAGATAAAAC	ACGCAAGTAGCGCAACAATATATGATATACACCGC
GTTTACATCCCTCATAGTTCAGATAAAAC	TAAAAATTGAAGTGAAGGGCATACAAGAAACAGTTGAT
GTTTACATCCCTCATAGTTCAGATAAAAC	CTTTGTCTTCTCTGTACTTGTATGTTTGAATTTCTTTGA
GTTTACATCCCTCATAGTTCAGATAAAAC	TTTCCTTTTTCACTGCCGTTTGATGTTGCGTATTTGGT
GTTTACATCCCTCATAGTTCAGATAAAAC	CGCTGAAAATTGAATACCTAAAGCATCTGCAGCTTTTT
GTTTACATCCCTCATAGTTCAGATAAAAC	ATACCAGCTCTGTTTAAAGGTGTCCAGTCAATGCTA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGCTTGGTACTACTAATCAGGATATTAATTTTATCA
GTTTACATCCCTCATAGTTCAGATAAAAC	CGGAAATGAATATAATTAATCCAAATCTAAAATTCAA
GTTTACATCCCTCATAGTTCAGATAAAAC	GCCGCCGATGGTGCCGTGTCGCTGTAACAATGTGTCA
GTTTACATCCCTCATAGTTCAGATAAAAC	TGAAATACACAACAAATTATAATCTTAAAAAGCCTG
GTTTACATCCCTCATAGTTCAGATAAAAC	TGGGAACACTTCAAACAAGCTTACAACACAGCATAT
GTTTACATCCCTCATAGTTCAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404397.1\|2712347_2713160_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|110924
NC_014652.1\|WP_041723518.1\|2719817_2721128_-\|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|377130
NC_014652.1\|WP_013404406.1\|2726865_2729091_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NC_014652.1\|WP_013404413.1\|2732224_2732578_+\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|131886
NC_014652.1\|WP_013404392.1\|2709551_2709788_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404404.1\|2721150_2722236_-\|hypothetical-protein	cmr1gr7	mkCas0175_cmr1gr7_CAS-III-C	gnl\|CDD\|377130
NC_014652.1\|WP_013404410.1\|2730267_2730480_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_014652.1\|WP_013404402.1\|2716788_2719830_-\|CRISPR-associated-protein-Csx11	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|274257
NC_014652.1\|WP_013404407.1\|2729140_2729653_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404399.1\|2714088_2715003_-\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl\|CDD\|187857
NC_014652.1\|WP_013404408.1\|2729737_2729887_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_014652.1\|WP_013404409.1\|2729998_2730211_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_014652.1\|WP_013404398.1\|2713186_2713915_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NC_014652.1\|WP_013404414.1\|2732624_2733023_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NC_014652.1\|WP_013404405.1\|2726381_2726936_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NC_014652.1\|WP_013404412.1\|2731166_2732177_+\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|236230
NC_014652.1\|WP_013404400.1\|2714999_2715551_-\|hypothetical-protein	cmr5gr11	mkCas0117_cmr5gr11_CAS-III-C	gnl\|CDD\|370886
NC_014652.1\|WP_013404401.1\|2715547_2716786_-\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_014652.1\|WP_013404396.1\|2711611_2712157_+\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404411.1\|2730688_2731147_+\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404397.1\|2712347_2713160_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|110924	pfam01972, SDH_sah, Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.	1.01343e-117
NC_014652.1\|WP_041723518.1\|2719817_2721128_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	9.55386e-05
NC_014652.1\|WP_013404406.1\|2726865_2729091_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NC_014652.1\|WP_013404413.1\|2732224_2732578_+\|stage-V-sporulation-protein-AE	gnl\|CDD\|131886	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	3.29406e-47
NC_014652.1\|WP_013404404.1\|2721150_2722236_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	2.50729e-09
NC_014652.1\|WP_013404410.1\|2730267_2730480_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	6.87656e-11
NC_014652.1\|WP_013404402.1\|2716788_2719830_-\|CRISPR-associated-protein-Csx11	gnl\|CDD\|274257	TIGR02682, hypothetical_protein_MM_3356, CRISPR-associated protein, Csx11 family. Members of this uncommon, sporadically distributed protein family are large (>900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, M. barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense).	3.48513e-92
NC_014652.1\|WP_013404399.1\|2714088_2715003_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	0.000214433
NC_014652.1\|WP_013404408.1\|2729737_2729887_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.1109e-12
NC_014652.1\|WP_013404411.1\|2730688_2731147_+\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	8.48702e-65
NC_014652.1\|WP_013404398.1\|2713186_2713915_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.94175e-34
NC_014652.1\|WP_013404405.1\|2726381_2726936_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	2.76819e-44
NC_014652.1\|WP_013404400.1\|2714999_2715551_-\|hypothetical-protein	gnl\|CDD\|370886	pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.	0.00161459
NC_014652.1\|WP_013404401.1\|2715547_2716786_-\|hypothetical-protein	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.28e-25
NC_014652.1\|WP_013404409.1\|2729998_2730211_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.3984e-22
NC_014652.1\|WP_013404412.1\|2731166_2732177_+\|stage-V-sporulation-protein-AD	gnl\|CDD\|236230	PRK08304, PRK08304, stage V sporulation protein AD; Validated.	0

>NC_014652.1|WP_013404404.1|2721150_2722236_-|hypothetical-protein
MGRKEVTVIFETITPLWTGDAWMKSKKIRPSSLLGSLRFWFEVICYFGGVVKKEDFDFSKGRFEKEIGQKEQGKLKDKLNALGCGFEQLTYVLKDLDICIPSIIFGTTGWKSLIQIKEILPLNDNCFENKLNLPGRICVSKLNDKVKENSDCPKGGNGDWSVFYLSKQYFYGQFSVKFLIEEKILDGIFYPLLKFMNEYGYWGGKWNIGYGRLNILEVRENNVANDNWRQNEKFDFNLFFKDIKGLEFKISEVNNFDELIKFKNNDKKIKILNNQVRKSDLKEVIKELIKTKAKKRAQNKINGGDKEERHKIFGTTAKPPNDEDLLPQGSKILPYIKKENGDFVGGFLSIADLLTLYKEGE
>NC_014652.1|WP_041723518.1|2719817_2721128_-|hypothetical-protein
MEINVDEIKNLIQLISYCKYYFKPKSEKKVEDYLNKQNGKPKAINENKVKSLERDFPFIGREYKDELERKDYKGECFKLLKNYKSNDTTKDFLISYLKEKIINDSNGFNFGNDQQLKNINLISGILDEYSADNYVKKLPPYSFVILATFRLKQPYFSKDDDEFYIISNPVLKEKTFKVPMIRGSSWKGALATAFRELINGEINFDERKKKIESFLRIFGAGSESIKVFEDYLKGKSVNFEDFKKKLLEFIFFELGLVVDNDLIQKIHNRESIIDPQKDLQNIVTEKISEKFKKMNNKLPVEFQSHRGRAIFYPTYFDRLSLEVINPHDRRKRAGTLPIYYEVVPEGTKGILQIIYIPFDGVLKREEELKSEAEQDLENLLLAIEMVSERGIGAKTKLGWGTFGFDNKKNYIVKFYTNRDLDISEELKSKGWIRWQD
>NC_014652.1|WP_013404402.1|2716788_2719830_-|CRISPR-associated-protein-Csx11
MAGLNLKNLKVYRNEILKAEIISLLALWDKIDPAKINKANVQLAKASLDCWKNDIENNEIKILGETINLWDHFLNNWRKWRKRNDKKYFLQVLYGIGESLNSGIDKGAPKDSVKVEPQDGRWLSNSFGSFRSNIIYLLREEKDINSIIGKIEKYIKNLFDTEEIKNWNELKLIKEKFEEKVEKFFCGLLSDDRFPVNDVSLWDQAYMATAMFKASLSEYILKNNCISAIPQQSEVKWRILGVQYDKLGLAEKGYKPQQIQWYREISKEIDDEIKTLLEYEYPIGNEIYRDETGIYFLVGEGLGEDLKDNSNLAKLKNELKGIEDKIIDIFKRKSFEEFYPAIFLTKASRGLMNLSYLIEKAKENFLKADWSKKKIDICLEKSESGRAIGICQICRQRLVFKSDIEEKDKNICSTCYENKTQGRIKKWFENLSGETIWMDELKDKNGRVALVTMKFELRDWLNGDMLNSLVLQKGINFLGDIKSLKKDLTDIYIINQDKEVQNSILKNYTDKALHGRKVKNDKIVEAFLLERSIGDRWEEFICKKLDDWDIEKNQPSKKKIDFDKRKIFWQNLTDEDINFLSTLILQFLLRKNPSPARLRRIWETTEEFFKDIKENICQYANIPEERCKRYYWENIDIKDGEYRDKDVVFWADDKNVYLISYVCNLQEKEEFKIKTSSNKDIILKIQSAKAINYLPCMSILDPTPISWQFIIPAEYVPNLIDSVMKKYEEYFKFVYGKLPLHIGVIVQDYKQPLYVGIKALRKIRRDIDDCGKLEVKIEGRVIKEKINANLRQEEKDNTTTAHYSLYWGDFNNLGYNFFIKPDDHYKKWIDSIDNIDDNTKIIVMPNTFDFEFLDKTTRRNEIYYDRNNKWKRKIPLKNSRPYDLETWEKFKKFRELFGKENKTKIARSTRLQKLISVIYSKLEDLENYKLPAHDKADIDVDNESINIFLSASFINILKLKEDRELAEGIKELFEIKNEENENLFSLLKERMTLENLQLFIDMYNFWHKALEEV
>NC_014652.1|WP_013404401.1|2715547_2716786_-|hypothetical-protein
MEKKINKWDIEYTVYGIAMDPIYIGTGGYTIGRVDNTIVRDPITKLPKIPGSSLAGTWRYYTVLELLSKIKDRQPDMNTVKSIEKPTVVEKIKEWIEKNSNEWNSLTGWYSFNGNVVAKITCAGQDNTPQEELSNSPYTEDKEGKTGHCGHCIVCKGFGFSKKDFSWQGMIYFSDLHILFFPVFTLYGTKWITTEEVLKCAGLFKKLGDNASDQSQSSGQQFFRVLIQNEEKEAQAEKSEKEYINLGWMYLPCTRESFSIDLEKVKFENFELKPENVVIVPEKLFSQIVNSNLEVRTSVSINPITGAAKEGALFTSEAIPRGTIFYGDLRIFDKSAFAELESKAGELPSSCALIEALSESKHFFETLGIGGMTTRGFGRLKLELKRKETEDDKNTSIQSTEDSKTVSGGEQR
>NC_014652.1|WP_013404400.1|2714999_2715551_-|hypothetical-protein
MSEDYMLEHTINKIAFELVNEKILDENEINKLLGVLCNDGVYAMWVYALDKLKGSNRNHKTGVEVPKIIKLSSKIEKVSNYIKNGSLEKVSELTEEINSLANEINNLQNDLEQLQGDERNKKAEEKRQKEKEKLKKEEEIKEKINQYFLDLANNLENLLFFKELFEKILIYARYHAKAMEDSK
>NC_014652.1|WP_013404399.1|2714088_2715003_-|hypothetical-protein
MKWYRLIFSQAQPIHIGSFIWGVVNETAAFIPGWTMWGALTNTYLRFNKFKDIEKSKEFFTKITNFYPAKACSKNEDKNQILSSLKCLFPKYEKGEFGFVEVPISEFDEDNNNFVSLDEFRFEFVDVIVSTAVEPVNRKAKDESLHEFEFILPKSKIDNCSLYWIGLIGFEDKEEYNEDLLKRYFSTLFVGGDIKYGYGKLELFDVQEIKKEEDLNSWNIKQDGRANIALESPLKQYVKFSGQECFEGEIKLIAEFDFSKNISEVSRASYYINIGSKIVSNMQSKNGDYNYLGNYFLYKGMLKP
>NC_014652.1|WP_013404398.1|2713186_2713915_-|rhomboid-family-intramembrane-serine-protease
MIPLKDTIPSREKPFMTWFIIIINVLVFLFQVSIPPEATQELVYRYGFIPEKFSRALSNGLITGIIYSIWPIICSMFMHGSWMHLISNMWSLWLFGDNVEDRVGHFKFLIFYLLSGFAAAYTHWFFNAHSLVAVVGASGAIAGVMGAYFLMFPLSSIVTLIPIGFIPLFVNIPAVFYLGLWFLSQVSSGILELFGPVFGSGIAWWAHIGGFVFGALTVNFFKKKYRRYNNFFDDEIFYYRYY
>NC_014652.1|WP_013404397.1|2712347_2713160_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSFWDLLIFFIIASSLQPVMKQRMLESARQKLIAKIEKKRGSRVILLVHRQETMSFLGFPIYKYIDINDSEEVIRAINMTDPSIPLDIILHTPGGLVLASTQIARAIKRHKGKVTVHVPHYAMSGGTLIALAADEIVMSEDAVLGPVDPQIGEFPAVSILEVVKQKTLNEIDDKTLILADIAKKAIKQTKEVVLELLSGNYPDDVAQNIAKELVEGKYTHDFPITYEKAKELGLKVSCCIDKEIKQLMCLYPQPVSKKPSVEYLWEPKRQ
>NC_014652.1|WP_013404396.1|2711611_2712157_+|hypothetical-protein
MQRKSLLEKLSSIRFRQYVLQEEGLNSWWDFRMPIEDDYTTLFELIKSIKRARLVFKALMACKRYFRIIPSKKGLCLVYRFSILSTAKNPELPVDINQPTEIIEYNGIKWFVEEFGSLIVIGEVDVNKVKRIVEKLEENWKKRYPKIREREIKKYIDSIKNENIEEMQKMWDSFVDVVNGD
>NC_014652.1|WP_013404392.1|2709551_2709788_+|hypothetical-protein
MVYEVTYNNSRLVFEGKEINYFKILEALDKLRDLRDYIELFYTEYSGLPLTSLPYDVLLDIFTNYLDFIGVQIKVIGR
>NC_014652.1|WP_013404405.1|2726381_2726936_+|biotin-transporter-BioY
MENAKSTNTTKMLVLSALFTAIVAVCAQVSIPIGPVPFTLQVLAIFLASLILPPKYAFLSLLVYDLLGAVGVPVFAGFTGGLSKFAGPTGGYLMAFPIAAFVTSYINAKKPIKNEAANASVALISGLAIIYVFGFLYLSWAAHMTLKKAFAAGVLPFIIPDIIKLAIAYLIARAVKSRKVLNIA
>NC_014652.1|WP_013404406.1|2726865_2729091_-|ATP-dependent-RecD-like-DNA-helicase
MQQNIQGMVSDIIYRNLENNYTVFEIICNDEVFTAVGIVPDIAIGEKVSVYGEFYVHPVYGQQLKVSYLEKLLPQTKDEIYLYLSSGVIKGIGQKTAKKIVDTFGDDTARILQEEPEKLLSIRGMTPEKVERIRNMFAFQKFLKDIMSIFSQYGFSQNHAMRLFKLYGFSALSLLQENPYFLLDVFPELDFKKVDRLALDMGVMPDDRRRISAKILNLLTLAANNEGHTCLPENKLKQLCIRTLDLPVEKIEEAIEALAQERRIVKDEVDSQEMVFLYGYYECERYIADKILSMLKEYDDIADIDEKISSFEEKNGIAFSPNQKKAIKMALTQGVSIITGGPGTGKTTIIKCIIQIFEGEGKKVFLCAPTGRAAKRMQAACERESKTIHRLLEMTVLDTHVIFQRGPNNPLKCDAIVVDEMSMVDSFLMNYLLAATKPTTRIVLVGDKDQLPSVGAGNVLKDLIKSQIVPCTTLTEVYRQSENSFIVLNAHRINRGEFPHLQKESDFYFIQKNSQEEILKTVIELVTKKLPNYLSCDPMTDIQVLCPSKKGIVGMYNLNRVLQQYLNPPHPSKKEYAYKENLFRVGDKVMQVKNNYSLEYEIVQGEEKGRASTGIFNGDIGVVKDIDRSQGALEILFDDEKLVYYDFSLLDDLELAYAMTVHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAMRYSALCDFLLRGQSNMQLQVL
>NC_014652.1|WP_013404407.1|2729140_2729653_-|hypothetical-protein
MNSIPKDIIYFVPHYTENGDSVLILFLSGEKKIVPMSIRSFSKKLYSLYAIDCQAIKKLISQRIGQKNLLPIVLPDATFIPVKTRKAVVKTDPIFGYVNMSQIFRIDDKDDHFEMLLRCGAVLSCLGSAKYFKKRITLASVITDYLQGIWSQGALKIKEECELENVFGLE
>NC_014652.1|WP_013404408.1|2729737_2729887_-|YvrJ-family-protein
MQDIIANIANIGFPIVLCIYLLTRFESKIDKLSDSIDKLSEKILQMKNN
>NC_014652.1|WP_013404409.1|2729998_2730211_-|DUF2922-domain-containing-protein
MLTLVLTFKLQNGKNFRLSIPDPKPNLTAAEVDSVMNLIVQKNIFVTSSPIVEKVSARIVDREVNTLIGQ
>NC_014652.1|WP_013404410.1|2730267_2730480_-|DUF1659-domain-containing-protein
MAAKPLVGSLQLKLENGTTSTGKIRLKTLSFDIKPEAQDMDVYQVGQAIASLQSKPLYTIIRSNNFELLY
>NC_014652.1|WP_013404411.1|2730688_2731147_+|stage-V-sporulation-protein-AC
MNIKDKKASEYQALVKANEPKTNSFKNCILAFLVGGAICDVGQAFLNLYSSFFPKDEAQVLTSITMIFLGAFLTGLGVYDKIGAFAGAGSIVPITGFANSIVSPAIEYKKEGFVFGVGSKMFLIAGPVLVYGISTSIIVGLLYYLVKVFPGI
>NC_014652.1|WP_013404412.1|2731166_2732177_+|stage-V-sporulation-protein-AD
MKLGRSTYRFESNVAISDCFTVVGKKEGQGPLSIYFDMVIEDEYAGQKSWELAEGKLLNIAITKLVQRVGENPDNIDLILSGDLLNQLSSSHFAARDLDIPFVGLYGACSTFALSIGLASIFVDGGFAKNVIAATSSHFCSAEKQFRYPLELGCQRPPTSQWTVTGAAAFLIRQEDSLHSPKITHFTVGRILDFGIKDPNNMGAAMAPAAFDTIMRHFSDTKRSFEYYDMIITGDLGYVGRKLLEELFKKEGIKFSTELFDCGILMFDPKTQNTGAGASGCAASACVFGGYLYKLLRERTFERILIVPTGALMSASTVQLGESIPVIAHALAIEMM
>NC_014652.1|WP_013404413.1|2732224_2732578_+|stage-V-sporulation-protein-AE
MDYLKAFLVGGLICVVGQILIDKTKLTSARILVLFVTLGAVLQGLGIYQKLVEFAGAGATVPLPGFGYSLAKGAIEEVSRVGLVGAFTGGVSRTAGGISAAVFFGYVISLIFNPRSK
>NC_014652.1|WP_013404414.1|2732624_2733023_-|hypothetical-protein
MNKLFLIFNHQLSQEQEKEAREALKIEEIVNLPPQLQDFWSNIPPDVELSEEMFEDITAFLIQNRGERENFCLIQGDFGATVYLVSWCFKNGFVPIYATTKRVAKEVVRPDGTVELLKVFKHERFRRYILCR

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Crispr_ID: NC_014652_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014652_6

2733415-2733968

TypeIII

Consensus_repeat	Method
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	PILER-CR
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	CRISPRCasFinder
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	CRT

8 spacers

csx20,WYL

The CRISPR arrays of NC_014652_6

>merge|NC_014652|6|2733415-2733968|PILER-CR,CRISPRCasFinder,CRT
GTTTGTAGCCTCCCCTTTGGGGATTGAAATTTCAATATGGTTTTTAAAAAAATTTTATATTTTCGGGTTTGTAGCCTCCCCTTTGGGGATTGAAATTGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTGGTTTGTAGCCTCCCCTTTGGGGATTGAAATATAGAAAGACAATGCAAGTTATGAATACAGAAGTCAGTTTGTAGCCTCCCCTTTGGGGATTGAAATTCCATTTGTAGCACCTCACTTGTTACAATTTGTAAAGTTTGTAGCCTCCCCTTTGGGGATTGAAATCAGAATGCCACTTAACATTATCCTTGTCCCAGAAAGTTTGTAGCCTCCCCTTTGGGGATTGAAATTCATCATAGATTTTTACTCTGTTTATCATGTTTTCCGTTTGTAGCCTCCCCTTTGGGGATTGAAATCAAGGATTTAACGTATTTGATAATTCTATTCGTAAGTTTGTAGCCTCCCCTTTGGGGATTGAAAGAAAGACGCACCCTCAGGCAACTCTGTAGCACCTGGTTTGTAGCCTCCCCTTTGGGGATTGAAAT

>NC_014652|6|4|2733415-2733968|PILER-CR
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TTCAATATGGTTTTTAAAAAAATTTTATATTTTCGG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	ATAGAAAGACAATGCAAGTTATGAATACAGAAGTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TCCATTTGTAGCACCTCACTTGTTACAATTTGTAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	CAGAATGCCACTTAACATTATCCTTGTCCCAGAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TCATCATAGATTTTTACTCTGTTTATCATGTTTTCC
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	CAAGGATTTAACGTATTTGATAATTCTATTCGTAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAG	AAAGACGCACCCTCAGGCAACTCTGTAGCACCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT

>NC_014652|6|6|2733415-2733967|CRISPRCasFinder
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TTTCAATATGGTTTTTAAAAAAATTTTATATTTTCGG
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TTGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TATAGAAAGACAATGCAAGTTATGAATACAGAAGTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TTCCATTTGTAGCACCTCACTTGTTACAATTTGTAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TCAGAATGCCACTTAACATTATCCTTGTCCCAGAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TTCATCATAGATTTTTACTCTGTTTATCATGTTTTCC
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	TCAAGGATTTAACGTATTTGATAATTCTATTCGTAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAA	GAAAGACGCACCCTCAGGCAACTCTGTAGCACCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAA

>NC_014652|6|5|2733415-2733968|CRT
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TTCAATATGGTTTTTAAAAAAATTTTATATTTTCGG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	ATAGAAAGACAATGCAAGTTATGAATACAGAAGTCA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TCCATTTGTAGCACCTCACTTGTTACAATTTGTAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	CAGAATGCCACTTAACATTATCCTTGTCCCAGAAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	TCATCATAGATTTTTACTCTGTTTATCATGTTTTCC
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT	CAAGGATTTAACGTATTTGATAATTCTATTCGTAA
GTTTGTAGCCTCCCCTTTGGGGATTGAAAG	AAAGACGCACCCTCAGGCAACTCTGTAGCACCTG
GTTTGTAGCCTCCCCTTTGGGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014652.1\|WP_013404420.1\|2737463_2740514_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_014652.1\|WP_013404422.1\|2741579_2742893_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_014652.1\|WP_013404424.1\|2745290_2746295_+\|serine-protease	unknown	unknown	gnl\|CDD\|225218
NC_014652.1\|WP_013404406.1\|2726865_2729091_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NC_014652.1\|WP_013404414.1\|2732624_2733023_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NC_014652.1\|WP_013404419.1\|2736893_2737295_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404421.1\|2740588_2741596_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_014652.1\|WP_013404407.1\|2729140_2729653_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404416.1\|2735136_2735547_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404423.1\|2743102_2745109_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NC_014652.1\|WP_013404408.1\|2729737_2729887_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_014652.1\|WP_013404411.1\|2730688_2731147_+\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885
NC_014652.1\|WP_013404417.1\|2735673_2736372_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404410.1\|2730267_2730480_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_014652.1\|WP_041723521.1\|2734228_2735056_-\|hypothetical-protein	unknown	unknown	unknown
NC_014652.1\|WP_013404405.1\|2726381_2726936_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NC_014652.1\|WP_013404418.1\|2736565_2736826_+\|stage-V-sporulation-protein-S	unknown	unknown	gnl\|CDD\|377254
NC_014652.1\|WP_013404413.1\|2732224_2732578_+\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|131886
NC_014652.1\|WP_013404409.1\|2729998_2730211_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_014652.1\|WP_013404412.1\|2731166_2732177_+\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|236230

Protein	Function_ID	Function_description	E-value
NC_014652.1\|WP_013404420.1\|2737463_2740514_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.84468e-105
NC_014652.1\|WP_013404422.1\|2741579_2742893_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	7.08132e-13
NC_014652.1\|WP_013404424.1\|2745290_2746295_+\|serine-protease	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	4.06668e-23
NC_014652.1\|WP_013404406.1\|2726865_2729091_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NC_014652.1\|WP_013404413.1\|2732224_2732578_+\|stage-V-sporulation-protein-AE	gnl\|CDD\|131886	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	3.29406e-47
NC_014652.1\|WP_013404421.1\|2740588_2741596_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.58361e-07
NC_014652.1\|WP_013404423.1\|2743102_2745109_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.34057e-14
NC_014652.1\|WP_013404408.1\|2729737_2729887_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.1109e-12
NC_014652.1\|WP_013404411.1\|2730688_2731147_+\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	8.48702e-65
NC_014652.1\|WP_013404418.1\|2736565_2736826_+\|stage-V-sporulation-protein-S	gnl\|CDD\|377254	pfam04232, SpoVS, Stage V sporulation protein S (SpoVS). In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly.	2.14095e-35
NC_014652.1\|WP_013404410.1\|2730267_2730480_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	6.87656e-11
NC_014652.1\|WP_013404405.1\|2726381_2726936_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	2.76819e-44
NC_014652.1\|WP_013404409.1\|2729998_2730211_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.3984e-22
NC_014652.1\|WP_013404412.1\|2731166_2732177_+\|stage-V-sporulation-protein-AD	gnl\|CDD\|236230	PRK08304, PRK08304, stage V sporulation protein AD; Validated.	0

>NC_014652.1|WP_013404414.1|2732624_2733023_-|hypothetical-protein
MNKLFLIFNHQLSQEQEKEAREALKIEEIVNLPPQLQDFWSNIPPDVELSEEMFEDITAFLIQNRGERENFCLIQGDFGATVYLVSWCFKNGFVPIYATTKRVAKEVVRPDGTVELLKVFKHERFRRYILCR
>NC_014652.1|WP_013404413.1|2732224_2732578_+|stage-V-sporulation-protein-AE
MDYLKAFLVGGLICVVGQILIDKTKLTSARILVLFVTLGAVLQGLGIYQKLVEFAGAGATVPLPGFGYSLAKGAIEEVSRVGLVGAFTGGVSRTAGGISAAVFFGYVISLIFNPRSK
>NC_014652.1|WP_013404412.1|2731166_2732177_+|stage-V-sporulation-protein-AD
MKLGRSTYRFESNVAISDCFTVVGKKEGQGPLSIYFDMVIEDEYAGQKSWELAEGKLLNIAITKLVQRVGENPDNIDLILSGDLLNQLSSSHFAARDLDIPFVGLYGACSTFALSIGLASIFVDGGFAKNVIAATSSHFCSAEKQFRYPLELGCQRPPTSQWTVTGAAAFLIRQEDSLHSPKITHFTVGRILDFGIKDPNNMGAAMAPAAFDTIMRHFSDTKRSFEYYDMIITGDLGYVGRKLLEELFKKEGIKFSTELFDCGILMFDPKTQNTGAGASGCAASACVFGGYLYKLLRERTFERILIVPTGALMSASTVQLGESIPVIAHALAIEMM
>NC_014652.1|WP_013404411.1|2730688_2731147_+|stage-V-sporulation-protein-AC
MNIKDKKASEYQALVKANEPKTNSFKNCILAFLVGGAICDVGQAFLNLYSSFFPKDEAQVLTSITMIFLGAFLTGLGVYDKIGAFAGAGSIVPITGFANSIVSPAIEYKKEGFVFGVGSKMFLIAGPVLVYGISTSIIVGLLYYLVKVFPGI
>NC_014652.1|WP_013404410.1|2730267_2730480_-|DUF1659-domain-containing-protein
MAAKPLVGSLQLKLENGTTSTGKIRLKTLSFDIKPEAQDMDVYQVGQAIASLQSKPLYTIIRSNNFELLY
>NC_014652.1|WP_013404409.1|2729998_2730211_-|DUF2922-domain-containing-protein
MLTLVLTFKLQNGKNFRLSIPDPKPNLTAAEVDSVMNLIVQKNIFVTSSPIVEKVSARIVDREVNTLIGQ
>NC_014652.1|WP_013404408.1|2729737_2729887_-|YvrJ-family-protein
MQDIIANIANIGFPIVLCIYLLTRFESKIDKLSDSIDKLSEKILQMKNN
>NC_014652.1|WP_013404407.1|2729140_2729653_-|hypothetical-protein
MNSIPKDIIYFVPHYTENGDSVLILFLSGEKKIVPMSIRSFSKKLYSLYAIDCQAIKKLISQRIGQKNLLPIVLPDATFIPVKTRKAVVKTDPIFGYVNMSQIFRIDDKDDHFEMLLRCGAVLSCLGSAKYFKKRITLASVITDYLQGIWSQGALKIKEECELENVFGLE
>NC_014652.1|WP_013404406.1|2726865_2729091_-|ATP-dependent-RecD-like-DNA-helicase
MQQNIQGMVSDIIYRNLENNYTVFEIICNDEVFTAVGIVPDIAIGEKVSVYGEFYVHPVYGQQLKVSYLEKLLPQTKDEIYLYLSSGVIKGIGQKTAKKIVDTFGDDTARILQEEPEKLLSIRGMTPEKVERIRNMFAFQKFLKDIMSIFSQYGFSQNHAMRLFKLYGFSALSLLQENPYFLLDVFPELDFKKVDRLALDMGVMPDDRRRISAKILNLLTLAANNEGHTCLPENKLKQLCIRTLDLPVEKIEEAIEALAQERRIVKDEVDSQEMVFLYGYYECERYIADKILSMLKEYDDIADIDEKISSFEEKNGIAFSPNQKKAIKMALTQGVSIITGGPGTGKTTIIKCIIQIFEGEGKKVFLCAPTGRAAKRMQAACERESKTIHRLLEMTVLDTHVIFQRGPNNPLKCDAIVVDEMSMVDSFLMNYLLAATKPTTRIVLVGDKDQLPSVGAGNVLKDLIKSQIVPCTTLTEVYRQSENSFIVLNAHRINRGEFPHLQKESDFYFIQKNSQEEILKTVIELVTKKLPNYLSCDPMTDIQVLCPSKKGIVGMYNLNRVLQQYLNPPHPSKKEYAYKENLFRVGDKVMQVKNNYSLEYEIVQGEEKGRASTGIFNGDIGVVKDIDRSQGALEILFDDEKLVYYDFSLLDDLELAYAMTVHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAMRYSALCDFLLRGQSNMQLQVL
>NC_014652.1|WP_013404405.1|2726381_2726936_+|biotin-transporter-BioY
MENAKSTNTTKMLVLSALFTAIVAVCAQVSIPIGPVPFTLQVLAIFLASLILPPKYAFLSLLVYDLLGAVGVPVFAGFTGGLSKFAGPTGGYLMAFPIAAFVTSYINAKKPIKNEAANASVALISGLAIIYVFGFLYLSWAAHMTLKKAFAAGVLPFIIPDIIKLAIAYLIARAVKSRKVLNIA
>NC_014652.1|WP_041723521.1|2734228_2735056_-|hypothetical-protein
MKNKDYKNKNLIKPAEEQTVLDFVEKKLSENAAIRELMKDEYISFGGIRDFLYFKFCPLYFGLCPHKKSKKDEACDSNLCWLEKFSDIHPSGAEGDHQFFHNLVKATVQPSICPECGEDELELKWQDEGYLAKLGLINFADVAYLECKSCKKRFITHADRMAVEFLLKVFLAKPSKKSPVKAGQTVVLALDKAGLEIFIEHLEKEKDIKTIWKRLDPFSISDQIGELDLNIAVADFMCEYYNIEYEEKNEIDTFFEEEDTEKFDISDLFDDFEEK
>NC_014652.1|WP_013404416.1|2735136_2735547_-|hypothetical-protein
MSPAFEIFIDKIVQTLKSMNLNVQKDIVDDIIIEIKEFKVNYAYSSIDVTDALSGLILLTQKEFLECRIKCNVFLKSKIGTTLTARNIEVLYSPIEEEKDQTAKLLRDYLLDIQPLKSMTEKDVGFVKKAIENIFE
>NC_014652.1|WP_013404417.1|2735673_2736372_-|hypothetical-protein
MFKGVSSILTFSEFLNTIVQENKWIYTHELLEKIKVPLPSQNQLKSFEVANSFYKEFLHVVYAKDILCMLNSMKIWAANNNLEVFSLLTTDMIPIVWLGEGYYGIIAKYKEKMIIPCALYQHFEDLYINFPMSDFVPFDICDAYRKLLENEENVAMNIVYARSIDELKREFKKNFKEFEIVFKGPDYYDLYASPVSKKYIVAPLKEILKDFFQNQIIYFSQLLSVQENLNKK
>NC_014652.1|WP_013404418.1|2736565_2736826_+|stage-V-sporulation-protein-S
MEVLKVAATSMPQKVANALAAIVKEQGEAELQAVGASAVNQAVKAIAIARGKVAPNGIDLYVIPAFADIVIDGEKKTAIKFIVKSR
>NC_014652.1|WP_013404419.1|2736893_2737295_-|hypothetical-protein
MGFVALEVKELIDILLKNVDIPEIITKVEVNKNEVTVGVKPAAFLPQTPLKFTITSVQNKLSILFDPSKSLIIYGFLLGKLKDEKIEGIQLFKDRLEIDLQKILTGNVKGVRIDRVEVSSEGKIEIDFCCGQK
>NC_014652.1|WP_013404420.1|2737463_2740514_-|EAL-domain-containing-protein
MRNNKAILFVLTVLLMLFHISPAYASHTPVKFEVDKSYPPFSYTSDGRIYGFAIDLANLVFEADKFKLELSSDTWNQVYKKLAEGKIDVTAPVAIVEERKKEVYFSKPIFTRHVGIYTPKGFSKNISLKNLESFKVGVMKSDYTETLLKEKLGINKYYTYPTIEDLIYALVDGKIDAALMSQEVANYFLVKNDLSDRAELKIKNIFTVKSAFAVSKKRPELVLYINQRLNFLTNKGIFDELYYNYFSTYSPEYYERKNRQILLSALYLLLIILFAASMAIFVMTRINRRLEHGKQAYEKYAQLLAENANAIVLTLNLNGEIIYFNKFAEQLTGYKSEEVVGKKWTDIFIPSHRREYIENLFKRIAEEKVLNDHENEIITKNGDIRWILWNNTLIESPYLNEPLIISTGLDITQIKKTQQLLEESYEEIEQTNQELINTLEILNKQSEMLLEEKEKYKFLVENVSDCIWEIDFQEKKIEFYGRLKDLFDIDAIKSKNDFSAWLEFFHEDDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWRWISSHVQILYNEEDKPEKIIAVNIDWTAKKEYEHKIEYIAYYDALTSLPNRKLFEERLESLIKKAEDEKTQGAVVLIDIDNFKDINDLYGHEAGDEYLKAVGEKVLEYLENLNLKTFFARVGGDEFAVILHGLAKKEEVIEVCTQLLSIFESEIYIQKLEGHIFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKNDFQIFMPFMLMKNLKKIEIEKSLKKAIEADQFELYYQPVINLKDMEIHSVEALLRWVLPEKGIISPLEFIPVAEESGLIVKIGEMVIEKAFSDLKNWERKGISYLHMAINLSARQFKTKFFENMVQKLIEQYGVDPKKISFEITETGAVENFDVSLKILSFLCQLGIRFLIDDFGTGYSSLIYLKKLPIGGVKIDRSFISEIEFSKENRAIVEGIILMAHKLDLKVVAEGVETKRELEILKEIGCDFAQGYLFSKPLPKTQVEKLLLARKITV
>NC_014652.1|WP_013404421.1|2740588_2741596_-|WYL-domain-containing-protein
MEIFLEAKSTFYKALEEIINRAYEKGTISQKEIYDVLTKYNCNFPVIEDRVFARNGSYQKNIYVLKRHDSKTYRLRIDTKIEPYVTNLEIMWLKLIMSSRYAELFLDSSTIEKIKKLKTAYVPPIDMSLIVPKNYSKILGREDIKNIAPKLKMVLRSILEKRLLRYTYIARQGQVFKNVVGIPVKIQYSLKDDMFYIIFYSLEHKTFAKCIIQGIENMTYEEGNFDREQVLKEYELYLKNAKAKQPIIIEVMNTKNALEKAFCMFSSFEKSARYLKEKNKHEIRIYYYEFEEAEIISRILYLGKSVVVTQPQHIRENIISRVRNALKVYCDNYMV
>NC_014652.1|WP_013404422.1|2741579_2742893_-|WYL-domain-containing-protein
MPGFNPFVNDFNKLRNFSRIVYLYGCYSREDAENFNIAKRTFDDELRRMRIFLGEDQYFSAEREGKKSLPCIVEDFFRDVENPLINIYFSKTSTALQTTLFFMILQVLNSSENKKAAAAQILDRISQVLDRDVADTDLESSLKRVLRQLQNLGIVRYLKNEKVYMLCSRARDVFKDFSTDEIKDIYISVLFFINSNVPNVPGWYLKESLEKYLLELGEEEFLKDANSMFWFTYIPHHYILEEELVWKFLEAASNNKKIKVWYYPRKKRQSVEFVCTPVRIVYDVKLGRWYFVVLRGEGLSALPVWRTEKIEILQEGFDPQQILPLARRLEKCFFVSVPTGKKGFEKIRLKFKCPSDSPYNFVLARVKRELKNARIANVDEKTFEVEYDISNIKEFKGWLRSFGERAVVLDDTEAGRELKEEMINEWKEILKNYGDFS
>NC_014652.1|WP_013404423.1|2743102_2745109_-|HAMP-domain-containing-protein
MNVIKVATKKLSGSLKTRIMSWFVLISLIPIAIFLIFSFSLIQKDAEKEIKTRLESAKNVALQEIERLCKLSLDYSILISSNPQLREAVAKKDHLKVVQIISPLASELSIHQIVVTDDKGILIGRSDVLSKFGDNLKDDYLVRCGLARLKYTSVQSENGTVYVKSVSDIVTQMSANNMRVIGTIIVGYKLDKKFVENLTQLTKMDIVVFSSDLSRTISSSNIEKLIDSHNLQMILSGQYEYIAASTPKGNYHYILLPIRRSEKIDVAGVLALVSKNGIVSSFIRASMRFSILLFIATLILVVIVSLFVSNRITRPIIKLAESAKKVASGSFDIQIKVDGSANDEISLLTHEFIRMVKNVNSYATNIEQTLSTTQQYIDRLNRIASDSAKTSKITSEQIKEIIALAENQKMAFEQTTQMVSELENQIQKMFDIFKMVQNEVSTIYTTTSKEQESIKMLINHMYTANSAINQVAMDLEKAIKDFKGIARMSQSISSLAERIKIIALNASIEAAKRNIPTFEVIASEISRLSQSANALAKSVLNAIEAGLSAFDQTSRKLENALSIVEAGAEVAKRSSESLSRIEMTNQQIKTRIENIMDKVASQQEKIFTINNVLKSQTQTVSQYFKTLMSTRDIFQNQKKAVDKLIDQFSDVHEGIVKLASISMGSENN
>NC_014652.1|WP_013404424.1|2745290_2746295_+|serine-protease
MFAKRCYLFRCCVLLLIALFIVYISIHPAGNNAVIAASQQKRNVYMFCSKSYFDKVYLGAEIQTFKSPFDFPFYVSKNPSDFFIAGFENDRLVFYYTNSKLFAGFSNIKIGSTVENVKKSKLSFMDRFVIIRGNSTYTYDDGNLRLNYDVAVVKNSYYVFLFYDRIAKPNVVCGIFMVKKSLWDEFLLSEHPISSKKDAMQSLLLSFEKIHLLHLNSIRSYLQKPYFIFSDSLSKLARMHSQSMAKYNYFSHTDISEKTPSDRFKDAGILFRKLGENIIMGTKLLPFFANHFLLNSKGHRQNIEESFEIVGVGCAVDPNYENVYYTQDFAVLLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014652_5	5.45\|2725316\|36\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2725316-2725351	36	NC_014652.1	814900-814935	2	0.944

1. spacer 5.45|2725316|36|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to position: 814900-814935, mismatch: 2, identity: 0.944

ataccagctctgtttaaaggtgtccagtcaatgcta	CRISPR spacer
ataccagctctattcaaaggtgtccagtcaatgcta	Protospacer
***********.**.*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	HM144385	Brochothrix phage NF5, complete genome	30490-30524	7	0.8
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP020577	Acinetobacter baumannii strain SSA12 plasmid pSSA12_1, complete sequence	61934-61969	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP027243	Acinetobacter baumannii strain WCHAB005078 plasmid p1_005078, complete sequence	66699-66734	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017657	Acinetobacter baumannii strain KAB08 plasmid unnamed, complete sequence	31416-31451	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP012008	Acinetobacter baumannii strain Ab04-mff plasmid pAB04-2, complete sequence	11564-11599	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	CP033518	Acinetobacter baumannii strain 2008S11-069 plasmid p2008S11-069-2, complete sequence	37189-37224	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_KF889012	Acinetobacter baumannii TYTH-1 plasmid pAB_CC, complete sequence	54378-54413	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP032741	Acinetobacter baumannii strain C25 plasmid unnamed1	49333-49368	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NC_017163	Acinetobacter baumannii 1656-2 plasmid ABKp1, complete sequence	45184-45219	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP039994	Acinetobacter baumannii strain TG22182 plasmid pTG22182_1, complete sequence	67135-67170	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP014216	Acinetobacter baumannii strain YU-R612 plasmid unnamed1, complete sequence	51620-51655	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017655	Acinetobacter baumannii strain KAB07 plasmid pKAB07, complete sequence	23926-23961	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	CP040043	Acinetobacter baumannii strain VB958 plasmid unnamed3, complete sequence	79177-79212	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017643	Acinetobacter baumannii strain KAB01 plasmid unnamed, complete sequence	16055-16090	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017651	Acinetobacter baumannii strain KAB05 plasmid unnamed, complete sequence	42719-42754	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017645	Acinetobacter baumannii strain KAB02 plasmid unnamed, complete sequence	2793-2828	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP020589	Acinetobacter baumannii strain 15A34 plasmid p15A34_1, complete sequence	17392-17427	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP020573	Acinetobacter baumannii strain 15A5 plasmid p15A5_1, complete sequence	62529-62564	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP019115	Acinetobacter baumannii strain MDR-CQ plasmid pMDR-CQ, complete sequence	41503-41538	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP025267	Acinetobacter baumannii isolate SMC_Paed_Ab_BL01 plasmid pSMC_AB_BL01_1, complete sequence	11322-11357	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP020593	Acinetobacter baumannii strain USA2 plasmid pUSA2_1, complete sequence	63565-63600	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017647	Acinetobacter baumannii strain KAB03 plasmid unnamed, complete sequence	29581-29616	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP017653	Acinetobacter baumannii strain KAB06 plasmid unnamed, complete sequence	63104-63139	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_MK386681	Acinetobacter baumannii strain ABAY09008 plasmid pABAY09008_1B, complete sequence	70143-70178	7	0.806
NC_014652_3	3.15\|2687050\|36\|NC_014652\|CRISPRCasFinder,CRT	2687050-2687085	36	NZ_CP019218	Acinetobacter baumannii strain XH731 plasmid pXH731, complete sequence	32177-32212	7	0.806
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	KT725776	Bacillus phage vB_BceS-MY192, partial genome	6003-6037	8	0.771
NC_014652_5	5.20\|2723668\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2723668-2723702	35	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	25150-25184	8	0.771
NC_014652_5	5.31\|2724391\|36\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2724391-2724426	36	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	144059-144094	8	0.778
NC_014652_6	6.1\|2733445\|36\|NC_014652\|PILER-CR,CRT	2733445-2733480	36	NZ_CP017206	Borreliella burgdorferi strain B331 plasmid B331_cp32_4, complete sequence	16523-16558	8	0.778
NC_014652_1	1.15\|2614446\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2614446-2614480	35	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	72919-72953	9	0.743
NC_014652_1	1.26\|2615165\|37\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2615165-2615201	37	NZ_AP017561	Pseudanabaena sp. ABRG5-3 plasmid ABRG53a, complete sequence	87922-87958	9	0.757
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	28146-28180	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ289555	Bacillus anthracis phage W Beta, complete genome	30946-30980	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	NC_007814	Bacillus phage Fah, complete genome	30753-30787	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	KY963370	Bacillus phage Negev_SA, complete genome	31583-31617	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	30753-30787	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	28785-28819	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	30789-30823	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ222851	Bacillus anthracis phage Cherry, complete genome	28147-28181	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	28914-28948	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	NC_007734	Bacillus phage WBeta, complete genome	30946-30980	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	NC_007458	Bacillus phage Gamma, complete genome	28785-28819	9	0.743
NC_014652_1	1.69\|2617981\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2617981-2618015	35	DQ222854	Bacillus anthracis phage Gamma collagen region, complete sequence	1064-1098	9	0.743
NC_014652_3	3.9\|2686658\|34\|NC_014652\|CRISPRCasFinder,CRT	2686658-2686691	34	NZ_CP018741	Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence	198916-198949	9	0.735
NC_014652_3	3.9\|2686658\|34\|NC_014652\|CRISPRCasFinder,CRT	2686658-2686691	34	MN693300	Marine virus AFVG_25M71, complete genome	24161-24194	9	0.735
NC_014652_3	3.10\|2686722\|34\|NC_014652\|CRISPRCasFinder,CRT	2686722-2686755	34	NZ_CP018741	Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence	198916-198949	9	0.735
NC_014652_3	3.10\|2686722\|34\|NC_014652\|CRISPRCasFinder,CRT	2686722-2686755	34	MN693300	Marine virus AFVG_25M71, complete genome	24161-24194	9	0.735
NC_014652_4	4.8\|2705337\|34\|NC_014652\|CRT	2705337-2705370	34	KF929199	Staphylococcus phage vB_SepS_SEP9, complete genome	83764-83797	9	0.735
NC_014652_4	4.8\|2705337\|34\|NC_014652\|CRT	2705337-2705370	34	NC_002473	Vibrio parahaemolyticus plasmid pO3K6 DNA, complete sequence	6494-6527	9	0.735
NC_014652_4	4.8\|2705337\|34\|NC_014652\|CRT	2705337-2705370	34	AY196694	Bacteriophage f237 unknown gene	1445-1478	9	0.735
NC_014652_4	4.8\|2705337\|34\|NC_014652\|CRT	2705337-2705370	34	AB043678	Vibrio phage VfO3K6 DNA, complete genome	6972-7005	9	0.735
NC_014652_4	4.8\|2705337\|34\|NC_014652\|CRT	2705337-2705370	34	NC_002362	Vibrio phage VfO3K6, complete genome	6972-7005	9	0.735
NC_014652_4	4.10\|2705468\|35\|NC_014652\|CRT	2705468-2705502	35	NZ_CP024658	Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence	68218-68252	9	0.743
NC_014652_6	6.1\|2733445\|36\|NC_014652\|PILER-CR,CRT	2733445-2733480	36	MN698239	Pelagibacter phage HTVC023P, complete genome	2579-2614	9	0.75
NC_014652_6	6.9\|2733444\|37\|NC_014652\|CRISPRCasFinder	2733444-2733480	37	NZ_CP017206	Borreliella burgdorferi strain B331 plasmid B331_cp32_4, complete sequence	16522-16558	9	0.757
NC_014652_4	4.10\|2705468\|35\|NC_014652\|CRT	2705468-2705502	35	GU071095	Synechococcus phage S-SM2, complete genome	117754-117788	10	0.714
NC_014652_6	6.9\|2733444\|37\|NC_014652\|CRISPRCasFinder	2733444-2733480	37	NZ_CP019456	Escherichia coli strain FHI_NMBU_03 plasmid pFHI_NMBU_03_1, complete sequence	34125-34161	10	0.73
NC_014652_6	6.9\|2733444\|37\|NC_014652\|CRISPRCasFinder	2733444-2733480	37	MN698239	Pelagibacter phage HTVC023P, complete genome	2579-2615	10	0.73
NC_014652_1	1.15\|2614446\|35\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2614446-2614480	35	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	60126-60160	11	0.686
NC_014652_3	3.17\|2687183\|35\|NC_014652\|CRISPRCasFinder,CRT	2687183-2687217	35	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	114271-114305	11	0.686
NC_014652_6	6.1\|2733445\|36\|NC_014652\|PILER-CR,CRT	2733445-2733480	36	NZ_CP019456	Escherichia coli strain FHI_NMBU_03 plasmid pFHI_NMBU_03_1, complete sequence	34125-34160	11	0.694

1. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 7, identity: 0.8

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
ttaatcattgatgattttggtgctgaaaagaaaga	Protospacer
***************** ** ******** .*..

2. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP020577 (Acinetobacter baumannii strain SSA12 plasmid pSSA12_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

3. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP027243 (Acinetobacter baumannii strain WCHAB005078 plasmid p1_005078, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

4. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017657 (Acinetobacter baumannii strain KAB08 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

5. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP012008 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-2, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

6. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to CP033518 (Acinetobacter baumannii strain 2008S11-069 plasmid p2008S11-069-2, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

7. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_KF889012 (Acinetobacter baumannii TYTH-1 plasmid pAB_CC, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

8. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP032741 (Acinetobacter baumannii strain C25 plasmid unnamed1) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

9. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NC_017163 (Acinetobacter baumannii 1656-2 plasmid ABKp1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

10. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP039994 (Acinetobacter baumannii strain TG22182 plasmid pTG22182_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

11. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP014216 (Acinetobacter baumannii strain YU-R612 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

12. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017655 (Acinetobacter baumannii strain KAB07 plasmid pKAB07, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

13. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to CP040043 (Acinetobacter baumannii strain VB958 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

14. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017643 (Acinetobacter baumannii strain KAB01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

15. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017651 (Acinetobacter baumannii strain KAB05 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

16. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017645 (Acinetobacter baumannii strain KAB02 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

17. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP020589 (Acinetobacter baumannii strain 15A34 plasmid p15A34_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

18. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP020573 (Acinetobacter baumannii strain 15A5 plasmid p15A5_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

19. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP019115 (Acinetobacter baumannii strain MDR-CQ plasmid pMDR-CQ, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

20. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP025267 (Acinetobacter baumannii isolate SMC_Paed_Ab_BL01 plasmid pSMC_AB_BL01_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

21. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP020593 (Acinetobacter baumannii strain USA2 plasmid pUSA2_1, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

22. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017647 (Acinetobacter baumannii strain KAB03 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

23. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP017653 (Acinetobacter baumannii strain KAB06 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

24. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_MK386681 (Acinetobacter baumannii strain ABAY09008 plasmid pABAY09008_1B, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

25. spacer 3.15|2687050|36|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP019218 (Acinetobacter baumannii strain XH731 plasmid pXH731, complete sequence) position: , mismatch: 7, identity: 0.806

tctagacgaaaatattgaagctattgta--gaatatga	CRISPR spacer
tgtatacgaaaatattgaagctcttgtattgagcat--	Protospacer
* ** ***************** *****  **..**

26. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 8, identity: 0.771

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
ctggttattgatgatttaggagctgaaagtggctc	Protospacer
.*..*.**********************.**.  *

27. spacer 5.20|2723668|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 8, identity: 0.771

taagtctgccgtctttaatcatgttatatactgat	CRISPR spacer
taggtctgccgtccttaatcatgttaggcacatac	Protospacer
**.**********.************ ..**  *.

28. spacer 5.31|2724391|36|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 8, identity: 0.778

ccaaatcaaagaagaaagcattgctgaactaagtag	CRISPR spacer
acaaagcaaagaagaaagcattgctgaatggaatga	Protospacer
 **** **********************. .*.*..

29. spacer 6.1|2733445|36|NC_014652|PILER-CR,CRT matches to NZ_CP017206 (Borreliella burgdorferi strain B331 plasmid B331_cp32_4, complete sequence) position: , mismatch: 8, identity: 0.778

ttcaatatggtttttaaaaaaattttatattttcgg	CRISPR spacer
tttatactattttttaataaaattttatattttagg	Protospacer
**.*   *. ******* *************** **

30. spacer 1.15|2614446|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 9, identity: 0.743

tctaatctcaattttttccatttcttgtttttctt	CRISPR spacer
cccagcagcaattttttcctttacttgtttttctg	Protospacer
.*.*..  *********** ** ***********

31. spacer 1.26|2615165|37|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017561 (Pseudanabaena sp. ABRG5-3 plasmid ABRG53a, complete sequence) position: , mismatch: 9, identity: 0.757

aaattattgatggttggaaaaataagttttttgatag------	CRISPR spacer
aaattattgatgattggaaaaatcag------gataaaatacc	Protospacer
************.********** **      ****.

32. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

33. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

34. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

35. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

36. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

37. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

38. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

39. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

40. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

41. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

42. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

43. spacer 1.69|2617981|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to DQ222854 (Bacillus anthracis phage Gamma collagen region, complete sequence) position: , mismatch: 9, identity: 0.743

ttaatcattgatgatttaggagctgaaaatgagac	CRISPR spacer
cttgtaatcgatgatttaggagctgaaagtggttc	Protospacer
.* .* **.*******************.**.  *

44. spacer 3.9|2686658|34|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP018741 (Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence) position: , mismatch: 9, identity: 0.735

tcattaccatctcttaaagtaaaaagcaaactta	CRISPR spacer
tcattaacttctcttaaagtaaaattttcatttt	Protospacer
****** * ***************  .  *.**

45. spacer 3.9|2686658|34|NC_014652|CRISPRCasFinder,CRT matches to MN693300 (Marine virus AFVG_25M71, complete genome) position: , mismatch: 9, identity: 0.735

tcattaccatctcttaaagtaaaaagcaaactta	CRISPR spacer
tcattaccatctattaaagtagaacctgcagata	Protospacer
************ ********.**  .. *  **

46. spacer 3.10|2686722|34|NC_014652|CRISPRCasFinder,CRT matches to NZ_CP018741 (Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence) position: , mismatch: 9, identity: 0.735

tcattaccatctcttaaagtaaaaagcaaactta	CRISPR spacer
tcattaacttctcttaaagtaaaattttcatttt	Protospacer
****** * ***************  .  *.**

47. spacer 3.10|2686722|34|NC_014652|CRISPRCasFinder,CRT matches to MN693300 (Marine virus AFVG_25M71, complete genome) position: , mismatch: 9, identity: 0.735

tcattaccatctcttaaagtaaaaagcaaactta	CRISPR spacer
tcattaccatctattaaagtagaacctgcagata	Protospacer
************ ********.**  .. *  **

48. spacer 4.8|2705337|34|NC_014652|CRT matches to KF929199 (Staphylococcus phage vB_SepS_SEP9, complete genome) position: , mismatch: 9, identity: 0.735

acattaatgaaggtaatatagaaatagcttttga	CRISPR spacer
aaataaattaaggtaatatagaaatagaaagggt	Protospacer
* ** *** ******************     *

49. spacer 4.8|2705337|34|NC_014652|CRT matches to NC_002473 (Vibrio parahaemolyticus plasmid pO3K6 DNA, complete sequence) position: , mismatch: 9, identity: 0.735

acattaatgaaggtaatatagaaatagcttttga	CRISPR spacer
ttcttaatgaaagtgatatagaaatagtaaatga	Protospacer
 . ********.**.************.   ***

50. spacer 4.8|2705337|34|NC_014652|CRT matches to AY196694 (Bacteriophage f237 unknown gene) position: , mismatch: 9, identity: 0.735

acattaatgaaggtaatatagaaatagcttttga	CRISPR spacer
ttcttaatgaaagtgatatagaaatagtaaatga	Protospacer
 . ********.**.************.   ***

51. spacer 4.8|2705337|34|NC_014652|CRT matches to AB043678 (Vibrio phage VfO3K6 DNA, complete genome) position: , mismatch: 9, identity: 0.735

acattaatgaaggtaatatagaaatagcttttga	CRISPR spacer
ttcttaatgaaagtgatatagaaatagtaaatga	Protospacer
 . ********.**.************.   ***

52. spacer 4.8|2705337|34|NC_014652|CRT matches to NC_002362 (Vibrio phage VfO3K6, complete genome) position: , mismatch: 9, identity: 0.735

acattaatgaaggtaatatagaaatagcttttga	CRISPR spacer
ttcttaatgaaagtgatatagaaatagtaaatga	Protospacer
 . ********.**.************.   ***

53. spacer 4.10|2705468|35|NC_014652|CRT matches to NZ_CP024658 (Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence) position: , mismatch: 9, identity: 0.743

cttttca----cttgctctttcatataatctaatacagt	CRISPR spacer
----tcaaaatgttgctttttcatatgatctaatacaaa	Protospacer
    ***     *****.********.**********.

54. spacer 6.1|2733445|36|NC_014652|PILER-CR,CRT matches to MN698239 (Pelagibacter phage HTVC023P, complete genome) position: , mismatch: 9, identity: 0.75

ttcaatatggtttttaaaaaaatttt-----atattttcgg	CRISPR spacer
ttcaatatggttttcaaaaaactttttaagaaaact-----	Protospacer
**************.****** ****     * *.*

55. spacer 6.9|2733444|37|NC_014652|CRISPRCasFinder matches to NZ_CP017206 (Borreliella burgdorferi strain B331 plasmid B331_cp32_4, complete sequence) position: , mismatch: 9, identity: 0.757

tttcaatatggtttttaaaaaaattttatattttcgg	CRISPR spacer
atttatactattttttaataaaattttatattttagg	Protospacer
 **.*   *. ******* *************** **

56. spacer 4.10|2705468|35|NC_014652|CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 10, identity: 0.714

cttttcacttgctctttcatataatctaatacagt	CRISPR spacer
gccttcaattgctctttcatatattctacaccaca	Protospacer
 ..**** *************** ****   **

57. spacer 6.9|2733444|37|NC_014652|CRISPRCasFinder matches to NZ_CP019456 (Escherichia coli strain FHI_NMBU_03 plasmid pFHI_NMBU_03_1, complete sequence) position: , mismatch: 10, identity: 0.73

tttcaat----atggtttttaaaaaaattttatattttcgg	CRISPR spacer
----aatggtagtggattttaaataaattttatatttttta	Protospacer
    ***    .*** ******* **************. .

58. spacer 6.9|2733444|37|NC_014652|CRISPRCasFinder matches to MN698239 (Pelagibacter phage HTVC023P, complete genome) position: , mismatch: 10, identity: 0.73

tttcaatatggtttttaaaaaaatttt-----atattttcgg	CRISPR spacer
cttcaatatggttttcaaaaaactttttaagaaaact-----	Protospacer
.**************.****** ****     * *.*

59. spacer 1.15|2614446|35|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

tctaatctcaattttttccatttcttgtttttctt	CRISPR spacer
atcctcctcaatttttttcttttcttgttttaagt	Protospacer
 ..  .***********.* ***********   *

60. spacer 3.17|2687183|35|NC_014652|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 11, identity: 0.686

acccttcgtcaaaattattgatttttttcaattca	CRISPR spacer
tgtttatttcaaaattcttgatttatttcaattgt	Protospacer
  ..* . ******** ******* ********

61. spacer 6.1|2733445|36|NC_014652|PILER-CR,CRT matches to NZ_CP019456 (Escherichia coli strain FHI_NMBU_03 plasmid pFHI_NMBU_03_1, complete sequence) position: , mismatch: 11, identity: 0.694

ttcaatatggtttttaaaaaaattttatattttcgg	CRISPR spacer
atggtagtggattttaaataaattttatatttttta	Protospacer
 * .  .*** ******* **************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

447035 : 460783

Geobacillus_phage(18.18%)

integrase

attL 447328:447342|attR 455050:455064

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013402354.1\|447035_447503_+	single-stranded DNA-binding protein	L0P8Q2	Lactobacillus_phage	1.8e-10	35.6
447328:447342	attL	NA	NA	NA	NA
WP_013402355.1\|447567_448092_+	HD domain-containing protein	NA	NA	NA	NA
WP_013402356.1\|448239_448614_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	5.1e-08	28.9
WP_013402357.1\|448595_448967_+	DUF4406 domain-containing protein	A0A2K9V2W4	Faecalibacterium_phage	1.2e-20	55.7
WP_013402358.1\|448950_449241_+	hypothetical protein	NA	NA	NA	NA
WP_013402359.1\|449268_451476_+	peptidoglycan DD-metalloendopeptidase family protein	G9J3H9	Clostridium_phage	4.0e-15	43.8
WP_013402360.1\|451587_451803_+	winged helix-turn-helix transcriptional regulator	K7PHB4	Enterobacterial_phage	5.5e-07	43.9
WP_013402362.1\|452133_453810_+	hypothetical protein	NA	NA	NA	NA
WP_013402363.1\|453816_454668_+\|integrase	tyrosine-type recombinase/integrase	A3F636	Streptococcus_phage	1.5e-07	25.5
WP_013402366.1\|455760_456600_+	DNA adenine methylase	M4R1L7	Synechococcus_phage	6.7e-48	37.3
455050:455064	attR	NA	NA	NA	NA
WP_041723276.1\|456639_456921_-	helix-turn-helix transcriptional regulator	A0A139ZPJ2	Marinitoga_camini_virus	1.6e-06	50.0
WP_013402368.1\|457157_457475_-	helix-turn-helix transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	5.3e-06	44.9
WP_013402369.1\|457610_457844_+	helix-turn-helix transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	6.0e-07	44.8
WP_148222333.1\|458061_459498_+	hypothetical protein	NA	NA	NA	NA
WP_013402371.1\|459487_460783_+	AAA family ATPase	Q38152	Bacillus_phage	3.7e-45	32.1

DBSCAN-SWA_2

809120 : 841810

Bacillus_phage(31.58%)

plate,holin,tail,transposase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041723105.1\|809120_810452_+	hypothetical protein	A0A2I7RSG3	Vibrio_phage	6.9e-15	25.4
WP_013402697.1\|810444_811911_+\|portal	phage portal protein	A0A0N6W8H8	Bacillus_phage	7.4e-143	54.1
WP_013402698.1\|811921_813613_+	hypothetical protein	A0A0N7ACI5	Bacillus_phage	3.2e-73	43.6
WP_013402699.1\|813609_813795_+	hypothetical protein	NA	NA	NA	NA
WP_013402701.1\|814027_815491_+	hypothetical protein	A0A0N7ACY8	Bacillus_phage	7.0e-77	45.2
WP_013402702.1\|815503_815899_+	DUF2190 family protein	A0A0A8WJN5	Clostridium_phage	1.9e-29	52.3
WP_013402703.1\|815932_816973_+	hypothetical protein	A0A0A8WEW9	Clostridium_phage	1.0e-114	58.9
WP_013402704.1\|816991_817345_+	hypothetical protein	A0A0N7ACH0	Bacillus_phage	2.0e-17	44.0
WP_013402705.1\|817346_817730_+	hypothetical protein	B6SBT3	Clostridium_virus	2.3e-11	36.3
WP_013402706.1\|817730_818057_+	hypothetical protein	A0A1U9WR56	Streptococcus_virus	1.3e-12	46.7
WP_013402707.1\|818059_818884_+	hypothetical protein	A0A0N7ACG6	Bacillus_phage	7.3e-31	31.6
WP_148222354.1\|818906_819092_+	oligoribonuclease	NA	NA	NA	NA
WP_013402709.1\|819097_820525_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S087	Clostridium_phage	3.7e-38	31.1
WP_013402710.1\|820542_820992_+	hypothetical protein	NA	NA	NA	NA
WP_013402711.1\|821007_821487_+	hypothetical protein	NA	NA	NA	NA
WP_013402713.1\|824359_824785_+	hypothetical protein	NA	NA	NA	NA
WP_013402714.1\|824859_825576_+	hypothetical protein	NA	NA	NA	NA
WP_013402715.1\|825572_825773_-	hypothetical protein	NA	NA	NA	NA
WP_013402716.1\|825870_826527_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RW06	Clostridium_phage	3.9e-19	31.1
WP_013402717.1\|826539_827538_+	hypothetical protein	NA	NA	NA	NA
WP_148222341.1\|827530_827932_+	hypothetical protein	NA	NA	NA	NA
WP_013402719.1\|827931_828372_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	2.6e-19	34.8
WP_148222355.1\|828418_829447_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	3.8e-69	45.0
WP_013402721.1\|829439_829985_+	YmfQ family protein	S6BFJ0	Thermus_phage	1.1e-35	43.9
WP_013402722.1\|829984_830779_+	hypothetical protein	NA	NA	NA	NA
WP_013402723.1\|830781_831054_+	hypothetical protein	NA	NA	NA	NA
WP_013402724.1\|831046_831193_+	hypothetical protein	NA	NA	NA	NA
WP_013402725.1\|831377_831632_+	hemolysin XhlA family protein	A0A0A7RWP8	Clostridium_phage	7.7e-08	45.9
WP_013402726.1\|831650_832199_+	N-acetylmuramoyl-L-alanine amidase	S5M9Y4	Brevibacillus_phage	3.4e-24	41.1
WP_013402727.1\|832195_832525_+\|holin	phage holin, ll-h family	NA	NA	NA	NA
WP_013402728.1\|833115_834510_+	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA
WP_083790228.1\|834556_834949_-	hypothetical protein	NA	NA	NA	NA
WP_013402730.1\|834863_835139_-	helicase DnaB	NA	NA	NA	NA
WP_049772014.1\|835321_835477_-	ethanolamine utilization protein EutA	NA	NA	NA	NA
WP_049772034.1\|835516_836446_+	helix-turn-helix transcriptional regulator	Q20DG0	Lactobacillus_phage	9.4e-11	60.0
WP_013402732.1\|836426_836729_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_013402620.1\|836785_838216_+\|transposase	ISNCY-like element ISCahy1 family transposase	NA	NA	NA	NA
WP_013402734.1\|838853_839450_+	hypothetical protein	A0A2H4JCB7	uncultured_Caudovirales_phage	6.0e-11	26.7
WP_083790229.1\|839906_840128_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_013402736.1\|840221_840740_-	ferritin	NA	NA	NA	NA
WP_013402015.1\|840862_841810_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1310290 : 1322435

Bacillus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013403176.1\|1310290_1310962_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-56	47.3
WP_013403177.1\|1310986_1312390_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.9e-43	38.1
WP_013403178.1\|1312481_1313711_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	3.6e-10	31.2
WP_041723131.1\|1313929_1315318_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.2e-55	33.1
WP_013403180.1\|1315441_1316164_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.0e-40	42.4
WP_013403181.1\|1316197_1316446_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013403182.1\|1316449_1317148_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013403183.1\|1317154_1319347_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.2e-157	41.4
WP_013403184.1\|1319328_1320753_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	2.4e-61	34.1
WP_013403185.1\|1320756_1321782_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-69	45.6
WP_013403186.1\|1321778_1322435_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.3e-18	33.3

DBSCAN-SWA_4

2149808 : 2210340

Sulfolobus_monocaudavirus(33.33%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013403944.1\|2149808_2151026_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	W0UUA7	Sulfolobus_monocaudavirus	1.1e-19	26.0
WP_013403945.1\|2151080_2151362_-	response regulator	NA	NA	NA	NA
WP_013403946.1\|2151410_2152529_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_013403947.1\|2152610_2153126_-	HD domain-containing protein	NA	NA	NA	NA
WP_013403948.1\|2153161_2153854_-	DNA repair protein RadC	NA	NA	NA	NA
WP_013403949.1\|2154158_2156111_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_013403950.1\|2156124_2157303_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_013403951.1\|2157322_2158465_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
WP_013403952.1\|2158461_2159898_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_013403953.1\|2159926_2162389_+	glycogen/starch/alpha-glucan phosphorylase	NA	NA	NA	NA
WP_013403954.1\|2162460_2163105_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_013403955.1\|2163138_2164089_-	ROK family protein	NA	NA	NA	NA
WP_013403956.1\|2164449_2165667_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	W0UUA7	Sulfolobus_monocaudavirus	1.1e-19	26.0
WP_013403958.1\|2166722_2167955_-	WG repeat-containing protein	NA	NA	NA	NA
WP_013403959.1\|2167969_2168851_-	hypothetical protein	NA	NA	NA	NA
WP_013403960.1\|2169607_2171695_-	ribonucleoside triphosphate reductase	D9ZNH0	Clostridium_phage	2.9e-145	45.3
WP_013403961.1\|2171913_2172588_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_013403962.1\|2172914_2174150_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_013403963.1\|2174161_2174482_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_013403964.1\|2174506_2175295_+	type III pantothenate kinase	NA	NA	NA	NA
WP_013403965.1\|2175362_2176355_-\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_013403966.1\|2176401_2177370_-	hypothetical protein	NA	NA	NA	NA
WP_013403967.1\|2177360_2178362_-\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_013403968.1\|2178418_2179315_-	DUF2156 domain-containing protein	NA	NA	NA	NA
WP_013403969.1\|2179422_2179929_+	hypothetical protein	NA	NA	NA	NA
WP_013403970.1\|2179915_2180788_+	Spo0B domain-containing protein	NA	NA	NA	NA
WP_013403971.1\|2180993_2181971_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_013403972.1\|2182045_2182939_-	glycosidase	NA	NA	NA	NA
WP_013403973.1\|2183147_2184176_-	DUF348 domain-containing protein	A0A219UR95	Bacillus_phage	8.3e-16	52.4
WP_013403974.1\|2184535_2185141_+	DedA family protein	NA	NA	NA	NA
WP_013403975.1\|2185114_2186803_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013403976.1\|2186996_2187887_+	hypothetical protein	NA	NA	NA	NA
WP_013403977.1\|2187939_2189604_-	nucleoside kinase	NA	NA	NA	NA
WP_013403978.1\|2189587_2191264_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.2e-11	30.3
WP_013403979.1\|2191414_2191984_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	F9VHY8	Thermus_phage	3.4e-11	32.1
WP_013403980.1\|2192129_2192537_-	hypothetical protein	NA	NA	NA	NA
WP_013403981.1\|2192984_2193272_-	hypothetical protein	NA	NA	NA	NA
WP_013403982.1\|2193349_2195575_-	Mur ligase	NA	NA	NA	NA
WP_013403983.1\|2195672_2196368_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013403984.1\|2196396_2197404_-	isocitrate/isopropylmalate dehydrogenase family protein	NA	NA	NA	NA
WP_013403985.1\|2197475_2199407_-	aconitate hydratase	NA	NA	NA	NA
WP_013403986.1\|2199549_2200722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013403987.1\|2200874_2201864_-	pyruvate carboxyltransferase	NA	NA	NA	NA
WP_013403988.1\|2201893_2202658_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_013403989.1\|2202699_2203485_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013403990.1\|2203531_2203858_-	dinitrogenase iron-molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_013403991.1\|2203879_2204680_-	radical SAM protein	NA	NA	NA	NA
WP_013403992.1\|2204681_2205971_-	nitrogenase	NA	NA	NA	NA
WP_013403993.1\|2205996_2207376_-	nitrogenase	NA	NA	NA	NA
WP_013403994.1\|2207348_2208743_-	nitrogenase component I subunit alpha	NA	NA	NA	NA
WP_013402019.1\|2208909_2210340_+\|transposase	ISNCY-like element ISCahy1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_014652.1|WP_083790229.1|839906_840128_-|zinc-ribbon-domain-containing-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_014652.1|WP_083790229.1|839906_840128_-|zinc-ribbon-domain-containing-protein

839906_840128_-

73 aa aa

809120-841810

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_014652_5	TypeIII	5.45\|2725316\|36\|NC_014652\|PILER-CR,CRISPRCasFinder,CRT	2725316-2725351	36	814935-814900	2

1. spacer 5.45|2725316|36|NC_014652|PILER-CR,CRISPRCasFinder,CRT matches to NC_014652 position: 814935-814900, mismatch: 2

ataccagctctgtttaaaggtgtccagtcaatgcta	CRISPR spacer
ataccagctctattcaaaggtgtccagtcaatgcta	Protospacer
***********.**.*********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014652

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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