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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014655 Leadbetterella byssophila DSM 17132, complete sequence 7 crisprs DEDDh,csa3,c2c10_CAS-V-U3,cas3,PrimPol,RT,WYL,DinG,Cas9_archaeal 4 15 12 0

Results visualization

1. NC_014655
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_1 578987-579060 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_2 774055-774137 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_3 1936655-1937494 Orphan NA
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_4 1938761-1940149 Orphan NA
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_5 2168780-2168853 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_6 2568308-2568396 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014655_7 2725307-2725416 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_014655_1 1.1|579011|26|NC_014655|CRISPRCasFinder 579011-579036 26 NC_014655.1 569445-569470 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2167929-2167954 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2168214-2168239 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2621176-2621201 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2751924-2751949 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2811847-2811872 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2812727-2812752 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 3831607-3831632 0 1.0
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2621111-2621136 1 0.962
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2805209-2805234 1 0.962
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 NC_014655.1 2806313-2806338 1 0.962
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2808234-2808274 1 0.976
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2812149-2812189 1 0.976
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2812447-2812487 1 0.976
NC_014655_7 7.1|2725336|52|NC_014655|CRISPRCasFinder 2725336-2725387 52 NC_014655.1 2729607-2729658 1 0.981
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2621158-2621198 2 0.951
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2811850-2811890 2 0.951
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 2812730-2812770 2 0.951
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 3831589-3831629 2 0.951
NC_014655_6 6.1|2568332|41|NC_014655|CRISPRCasFinder 2568332-2568372 41 NC_014655.1 4017337-4017377 2 0.951

1. spacer 1.1|579011|26|NC_014655|CRISPRCasFinder matches to position: 569445-569470, mismatch: 0, identity: 1.0

aatcccacaagttttgttgttgatcc	CRISPR spacer
aatcccacaagttttgttgttgatcc	Protospacer
**************************

2. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2167929-2167954, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

3. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2168214-2168239, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

4. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2621176-2621201, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

5. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2751924-2751949, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

6. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2811847-2811872, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

7. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2812727-2812752, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

8. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 3831607-3831632, mismatch: 0, identity: 1.0

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaaaaaagtaacaagaaga	Protospacer
**************************

9. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2621111-2621136, mismatch: 1, identity: 0.962

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgccaataaagtaacaagaaga	Protospacer
********** ***************

10. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2805209-2805234, mismatch: 1, identity: 0.962

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgtgccaaaaaagtaacaagaaga	Protospacer
****.*********************

11. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to position: 2806313-2806338, mismatch: 1, identity: 0.962

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcgtcaaaaaagtaacaagaaga	Protospacer
******.*******************

12. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2808234-2808274, mismatch: 1, identity: 0.976

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gctccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
***************************** ***********

13. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2812149-2812189, mismatch: 1, identity: 0.976

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gctccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
***************************** ***********

14. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2812447-2812487, mismatch: 1, identity: 0.976

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gctccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
***************************** ***********

15. spacer 7.1|2725336|52|NC_014655|CRISPRCasFinder matches to position: 2729607-2729658, mismatch: 1, identity: 0.981

gagttaggcgcgaatccggtcaaagaagagtaaactaaatcgtctatagtta	CRISPR spacer
gagctaggcgcgaatccggtcaaagaagagtaaactaaatcgtctatagtta	Protospacer
***.************************************************

16. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2621158-2621198, mismatch: 2, identity: 0.951

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gcgccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
** ************************** ***********

17. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2811850-2811890, mismatch: 2, identity: 0.951

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gcgccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
** ************************** ***********

18. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 2812730-2812770, mismatch: 2, identity: 0.951

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gcgccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
** ************************** ***********

19. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 3831589-3831629, mismatch: 2, identity: 0.951

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gcgccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
** ************************** ***********

20. spacer 6.1|2568332|41|NC_014655|CRISPRCasFinder matches to position: 4017337-4017377, mismatch: 2, identity: 0.951

gctccaaaaaagtaacaagaagaatattcctgtttttttgc	CRISPR spacer
gcgccaaaaaagtaacaagaagaatattcatgtttttttgc	Protospacer
** ************************** ***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014655_5 5.1|2168804|26|NC_014655|CRISPRCasFinder 2168804-2168829 26 JQ680351 Unidentified phage clone 1013_scaffold1563 genomic sequence 5251-5276 4 0.846
NC_014655_3 3.5|1937020|30|NC_014655|CRISPRCasFinder,PILER-CR 1937020-1937049 30 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 112382-112411 6 0.8
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NC_010180 Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence 234993-235022 6 0.8
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP031072 Bacillus mycoides strain BPN401 plasmid pl395, complete sequence 136181-136210 6 0.8
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 CP037991 Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence 440573-440602 6 0.8
NC_014655_4 4.12|1939913|30|NC_014655|CRISPRCasFinder,PILER-CR 1939913-1939942 30 AP013817 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, *** SEQUENCING IN PROGRESS *** 7462-7491 6 0.8
NC_014655_4 4.13|1939992|30|NC_014655|CRISPRCasFinder,PILER-CR 1939992-1940021 30 NZ_CP041677 Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence 65962-65991 6 0.8
NC_014655_4 4.14|1940071|30|NC_014655|CRISPRCasFinder,PILER-CR 1940071-1940100 30 NZ_CP026318 Vibrio campbellii strain BoB-90 plasmid unnamed 2, complete sequence 65547-65576 6 0.8
NC_014655_4 4.14|1940071|30|NC_014655|CRISPRCasFinder,PILER-CR 1940071-1940100 30 NZ_CP046830 Vibrio parahaemolyticus strain 2012AW-0224 plasmid unnamed1, complete sequence 54401-54430 6 0.8
NC_014655_4 4.17|1939362|29|NC_014655|PILER-CR 1939362-1939390 29 CP015514 Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence 650089-650117 6 0.793
NC_014655_4 4.17|1939362|29|NC_014655|PILER-CR 1939362-1939390 29 NC_010889 Actinobacillus pleuropneumoniae isolate 12494 plasmid p12494, complete sequence 11884-11912 6 0.793
NC_014655_3 3.1|1936704|30|NC_014655|CRISPRCasFinder 1936704-1936733 30 NZ_CP016453 Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence 182464-182493 7 0.767
NC_014655_3 3.2|1936783|30|NC_014655|CRISPRCasFinder,PILER-CR 1936783-1936812 30 NC_003267 Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120gamma, complete sequence 49756-49785 7 0.767
NC_014655_3 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR 1937099-1937128 30 KJ019069 Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome 59874-59903 7 0.767
NC_014655_3 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR 1937099-1937128 30 NC_031900 Synechococcus phage S-CAM4 isolate 0809SB33, complete genome 59893-59922 7 0.767
NC_014655_3 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR 1937099-1937128 30 KU686202 Synechococcus phage S-CAM4 isolate 1010NB23, complete genome 59951-59980 7 0.767
NC_014655_3 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR 1937099-1937128 30 KU686200 Synechococcus phage S-CAM4 isolate 0309CC44, complete genome 59868-59897 7 0.767
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 385394-385423 7 0.767
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP009368 Bacillus cereus strain FM1 plasmid unnamed, complete sequence 62780-62809 7 0.767
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP053657 Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence 460207-460236 7 0.767
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP009691 Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence 142101-142130 7 0.767
NC_014655_3 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR 1937336-1937365 30 NZ_CP034868 Buchnera aphidicola (Macrosiphum gaurae) strain Mga plasmid pLeu, complete sequence 5756-5785 7 0.767
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 MF417906 Uncultured Caudovirales phage clone 7F_8, partial genome 37033-37062 7 0.767
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 MF417894 Uncultured Caudovirales phage clone 7AX_4, partial genome 3699-3728 7 0.767
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 MF417905 Uncultured Caudovirales phage clone 8AX_11, partial genome 37055-37084 7 0.767
NC_014655_4 4.16|1938967|30|NC_014655|PILER-CR 1938967-1938996 30 NZ_CP020864 Paenibacillus sp. Cedars plasmid unnamed1, complete sequence 184861-184890 7 0.767
NC_014655_4 4.16|1938967|30|NC_014655|PILER-CR 1938967-1938996 30 NZ_CP032413 Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence 30881-30910 7 0.767
NC_014655_4 4.20|1939834|30|NC_014655|PILER-CR 1939834-1939863 30 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 47760-47789 7 0.767
NC_014655_3 3.1|1936704|30|NC_014655|CRISPRCasFinder 1936704-1936733 30 NZ_CP035512 Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence 112900-112929 8 0.733
NC_014655_3 3.1|1936704|30|NC_014655|CRISPRCasFinder 1936704-1936733 30 NC_048709 Vibrio phage YC, complete genome 83052-83081 8 0.733
NC_014655_3 3.7|1937178|30|NC_014655|CRISPRCasFinder,PILER-CR 1937178-1937207 30 MG945638 UNVERIFIED: Microviridae sp. isolate 7092-1602, complete genome 1163-1192 8 0.733
NC_014655_4 4.4|1939125|30|NC_014655|CRISPRCasFinder,PILER-CR 1939125-1939154 30 NZ_CP023514 Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence 93825-93854 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024321 Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2 17949-17978 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024395 Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence 18008-18037 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024209 Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2 29170-29199 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024211 Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4 14449-14478 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024217 Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9 21216-21245 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024338 Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3 20973-21002 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP040828 Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence 13791-13820 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024357 Borrelia miyamotoi strain Izh-16 plasmid pIzh16-3, complete sequence 17300-17329 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024358 Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence 14883-14912 8 0.733
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP024378 Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence 8488-8517 8 0.733
NC_014655_4 4.16|1938967|30|NC_014655|PILER-CR 1938967-1938996 30 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 257154-257183 8 0.733
NC_014655_3 3.1|1936704|30|NC_014655|CRISPRCasFinder 1936704-1936733 30 NZ_CP048608 Pseudomonas fluorescens strain DR133 plasmid unnamed, complete sequence 27061-27090 9 0.7
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NC_002759 Pseudomonas syringae pv. maculicola str. M6 plasmid pFKN, complete sequence 6832-6861 9 0.7
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NC_004633 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence 5590-5619 9 0.7
NC_014655_4 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR 1939204-1939233 30 NZ_CP034079 Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence 5240-5269 9 0.7

1. spacer 5.1|2168804|26|NC_014655|CRISPRCasFinder matches to JQ680351 (Unidentified phage clone 1013_scaffold1563 genomic sequence) position: , mismatch: 4, identity: 0.846

tttgcgccaaaaaagtaacaagaaga	CRISPR spacer
tttgcaccaaaaacgtaacaagaaat	Protospacer
*****.******* **********. 

2. spacer 3.5|1937020|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 6, identity: 0.8

atttccggcgagtgtagcaagcgcggtaga	CRISPR spacer
aggtgcagcgagtgtagcaagcgcggtatc	Protospacer
*  * *.*********************  

3. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcacttccgttgt	Protospacer
******************* ***.*   *.

4. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcacttccgttgt	Protospacer
******************* ***.*   *.

5. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcacttccgttgt	Protospacer
******************* ***.*   *.

6. spacer 4.12|1939913|30|NC_014655|CRISPRCasFinder,PILER-CR matches to AP013817 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

gcaagaattacttgcagttgcaaagttagc	CRISPR spacer
tcaagaattaccttcagttgcaaatgaagc	Protospacer
 **********.* **********   ***

7. spacer 4.13|1939992|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP041677 (Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ctttggactcaggataattagaaataatac	CRISPR spacer
cctttagctcaggatcattagaaacaatac	Protospacer
*.** ..******** ********.*****

8. spacer 4.14|1940071|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP026318 (Vibrio campbellii strain BoB-90 plasmid unnamed 2, complete sequence) position: , mismatch: 6, identity: 0.8

ttatccagtcgatgtacccttctggagtta	CRISPR spacer
ttatccagtcgatgtagcctttggtggtca	Protospacer
**************** ****. * .**.*

9. spacer 4.14|1940071|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP046830 (Vibrio parahaemolyticus strain 2012AW-0224 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ttatccagtcgatgtacccttctggagtta	CRISPR spacer
ttatccagtcgatgtagcctttggtggtca	Protospacer
**************** ****. * .**.*

10. spacer 4.17|1939362|29|NC_014655|PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

attgctaaatcttctatttcagacataga	CRISPR spacer
gtcgctaaatcgactatttcagacatatt	Protospacer
.*.********  **************  

11. spacer 4.17|1939362|29|NC_014655|PILER-CR matches to NC_010889 (Actinobacillus pleuropneumoniae isolate 12494 plasmid p12494, complete sequence) position: , mismatch: 6, identity: 0.793

attgctaaatcttctatttcagacataga	CRISPR spacer
aaacctaaatcttctattccggacataaa	Protospacer
*   **************.*.******.*

12. spacer 3.1|1936704|30|NC_014655|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttccctcttgcagttcctgaagcaacac	CRISPR spacer
gactcccgcttgcagttcctgcagcaagcc	Protospacer
  .**** ************* *****  *

13. spacer 3.2|1936783|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NC_003267 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120gamma, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacaggttcaggaaaatccgttcagatt	CRISPR spacer
acaacaggctcaggaaaatcagttttggta	Protospacer
.*******.*********** ***. *.* 

14. spacer 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR matches to KJ019069 (Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome) position: , mismatch: 7, identity: 0.767

ttacaaaccaaaatatgcctctttcctacc	CRISPR spacer
attaaaaccaaaagatgcatctttccttac	Protospacer
 *  ********* **** ********  *

15. spacer 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NC_031900 (Synechococcus phage S-CAM4 isolate 0809SB33, complete genome) position: , mismatch: 7, identity: 0.767

ttacaaaccaaaatatgcctctttcctacc	CRISPR spacer
attaaaaccaaaagatgcatctttccttac	Protospacer
 *  ********* **** ********  *

16. spacer 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR matches to KU686202 (Synechococcus phage S-CAM4 isolate 1010NB23, complete genome) position: , mismatch: 7, identity: 0.767

ttacaaaccaaaatatgcctctttcctacc	CRISPR spacer
attaaaaccaaaagatgcatctttccttac	Protospacer
 *  ********* **** ********  *

17. spacer 3.6|1937099|30|NC_014655|CRISPRCasFinder,PILER-CR matches to KU686200 (Synechococcus phage S-CAM4 isolate 0309CC44, complete genome) position: , mismatch: 7, identity: 0.767

ttacaaaccaaaatatgcctctttcctacc	CRISPR spacer
attaaaaccaaaagatgcatctttccttac	Protospacer
 *  ********* **** ********  *

18. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcactcccgttgt	Protospacer
******************* **..*   *.

19. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcactcccgttgt	Protospacer
******************* **..*   *.

20. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaagcactcccgttgt	Protospacer
******************* **..*   *.

21. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
aaaaggagaataaagaggcacttccgttgt	Protospacer
****************.** ***.*   *.

22. spacer 3.9|1937336|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP034868 (Buchnera aphidicola (Macrosiphum gaurae) strain Mga plasmid pLeu, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaggagaataaagaagctctttccaggc	CRISPR spacer
ttaagggcaataaagaagctctttcaggac	Protospacer
  ****. ***************** .*.*

23. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to MF417906 (Uncultured Caudovirales phage clone 7F_8, partial genome) position: , mismatch: 7, identity: 0.767

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
gagttttcaggtcacctacaagaatgttat	Protospacer
 . ***.********** ********* * 

24. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to MF417894 (Uncultured Caudovirales phage clone 7AX_4, partial genome) position: , mismatch: 7, identity: 0.767

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
gagttttcaggtcacctacaagaatgttat	Protospacer
 . ***.********** ********* * 

25. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to MF417905 (Uncultured Caudovirales phage clone 8AX_11, partial genome) position: , mismatch: 7, identity: 0.767

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
gagttttcaggtcacctacaagaatgttat	Protospacer
 . ***.********** ********* * 

26. spacer 4.16|1938967|30|NC_014655|PILER-CR matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttagagattacttattggaaaggccaaaac	CRISPR spacer
ttagagattacttatttgaaaatcaagagt	Protospacer
**************** ****. * *.*..

27. spacer 4.16|1938967|30|NC_014655|PILER-CR matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 7, identity: 0.767

ttagagattacttattggaaaggccaaaac	CRISPR spacer
ttagagattacttatttgaaaatcaagagt	Protospacer
**************** ****. * *.*..

28. spacer 4.20|1939834|30|NC_014655|PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

ggggca----gacggtaaggacgtcgagcatttt	CRISPR spacer
----caccgcgacggtaaggaggtcgagcatgtc	Protospacer
    **    *********** ********* *.

29. spacer 3.1|1936704|30|NC_014655|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 8, identity: 0.733

ctttccctcttgcagttcctgaagcaacac	CRISPR spacer
gcccgcctgttgcagatcctgaagcaacgc	Protospacer
 ... *** ****** ************.*

30. spacer 3.1|1936704|30|NC_014655|CRISPRCasFinder matches to NC_048709 (Vibrio phage YC, complete genome) position: , mismatch: 8, identity: 0.733

ctttccctcttgcagttcctgaagcaacac	CRISPR spacer
gaaatcctcatgcagttcctgaagcagctc	Protospacer
    .**** ****************.* *

31. spacer 3.7|1937178|30|NC_014655|CRISPRCasFinder,PILER-CR matches to MG945638 (UNVERIFIED: Microviridae sp. isolate 7092-1602, complete genome) position: , mismatch: 8, identity: 0.733

gaagtgcttttgagcagtaatttgcgcgtc	CRISPR spacer
aattaatgtttgagcaggaatttgcgcgtc	Protospacer
.*   .. ********* ************

32. spacer 4.4|1939125|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP023514 (Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tttgtgatgaaattcccaaattgcaacatg	CRISPR spacer
aggcgggtgaatttcccaaattgcaacaag	Protospacer
     *.**** **************** *

33. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024321 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

34. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024395 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

35. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024209 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

36. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024211 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

37. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024217 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

38. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024338 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

39. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP040828 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

40. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024357 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-3, complete sequence) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

41. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024358 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

42. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP024378 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence) position: , mismatch: 8, identity: 0.733

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
caatttcaagctcaccttcaagaatggtac	Protospacer
.. **** ** ***************  * 

43. spacer 4.16|1938967|30|NC_014655|PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.733

ttagagattacttattggaaaggccaaaac	CRISPR spacer
acgaactttagttattggaaaggcaaaaac	Protospacer
 ...*  *** ************* *****

44. spacer 3.1|1936704|30|NC_014655|CRISPRCasFinder matches to NZ_CP048608 (Pseudomonas fluorescens strain DR133 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ctttccctcttgcagttcctgaagcaacac	CRISPR spacer
gctgccctcttgcagctcctgaagccggcg	Protospacer
 .* ***********.********* .   

45. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NC_002759 (Pseudomonas syringae pv. maculicola str. M6 plasmid pFKN, complete sequence) position: , mismatch: 9, identity: 0.7

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
atttttccaggtcaccttcaacaatagccc	Protospacer
  .****************** ***.    

46. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NC_004633 (Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence) position: , mismatch: 9, identity: 0.7

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
atttttccaggtcaccttcaacaatagccc	Protospacer
  .****************** ***.    

47. spacer 4.5|1939204|30|NC_014655|CRISPRCasFinder,PILER-CR matches to NZ_CP034079 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence) position: , mismatch: 9, identity: 0.7

tgctttccaggtcaccttcaagaatgtaaa	CRISPR spacer
atttttccaggtcaccttcaacaatagccc	Protospacer
  .****************** ***.    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 274014 : 303071 20 Feldmannia_irregularis_virus(50.0%) transposase,integrase attL 267130:267145|attR 303741:303756
DBSCAN-SWA_2 331328 : 360759 31 Acinetobacter_phage(50.0%) transposase,protease,integrase,tRNA attL 341270:341284|attR 350122:350136
DBSCAN-SWA_3 512630 : 577926 54 Bacillus_phage(25.0%) transposase,integrase,tRNA attL 569613:569631|attR 578994:579012
DBSCAN-SWA_4 805575 : 863404 77 Leptospira_phage(26.67%) transposase,integrase,tRNA attL 845309:845328|attR 860936:860955
DBSCAN-SWA_5 981472 : 1037567 60 Leptospira_phage(33.33%) transposase,integrase,tRNA attL 1002896:1002921|attR 1025696:1025721
DBSCAN-SWA_6 1056714 : 1106366 53 uncultured_marine_virus(16.67%) transposase,protease,integrase,tRNA attL 1078113:1078128|attR 1094605:1094620
DBSCAN-SWA_7 1124996 : 1160741 32 Leptospira_phage(22.22%) transposase,integrase,tRNA attL 1121559:1121573|attR 1144245:1144259
DBSCAN-SWA_8 2213964 : 2223938 7 uncultured_virus(16.67%) NA NA
DBSCAN-SWA_9 2397992 : 2430914 33 Cafeteria_roenbergensis_virus(16.67%) transposase,integrase,tail attL 2415221:2415235|attR 2429748:2429762
DBSCAN-SWA_10 2636663 : 2646913 13 Brochothrix_phage(50.0%) transposase,integrase,holin attL 2637876:2637931|attR 2655437:2655492
DBSCAN-SWA_11 2658581 : 2686930 24 Bacillus_phage(100.0%) transposase,integrase attL 2657988:2658047|attR 2686968:2687495
DBSCAN-SWA_12 3001644 : 3054160 42 Leptospira_phage(16.67%) transposase,integrase,holin,protease,tRNA attL 3023867:3023883|attR 3058812:3058828
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage