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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014720 Caldicellulosiruptor kronotskyensis 2002, complete sequence 8 crisprs c2c9_V-U4,Cas14b_CAS-V-F,csa3,cas14k,cas4,DEDDh,cas3,cas6,cas10,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,cas5,cas7,cas7b,cas8b1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csx20,WYL 0 15 3 0

Results visualization

1. NC_014720
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_1 2663461-2675104 TypeIII I-A
176 spacers
cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas2,cas1,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_2 2725100-2725725 TypeI NA
9 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_3 2735113-2736658 TypeI-B NA
23 spacers
cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_4 2745478-2746034 TypeI-B NA
8 spacers
cas8b1,cas7b,cas5,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_5 2769632-2770838 TypeIII NA
18 spacers
csx1,cas6,csm5gr7,csm4gr5,csm3gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_6 2772516-2772678 TypeIII NA
2 spacers
csx1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_7 2788771-2789325 TypeIII NA
8 spacers
cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014720_8 2791967-2792598 TypeIII NA
9 spacers
cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014720_1 1.12|2664210|38|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2664210-2664247 38 NC_012036 Caldicellulosiruptor bescii DSM 6725 plasmid pATHE01, complete sequence 1377-1414 0 1.0
NC_014720_5 5.1|2769662|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769662-2769696 35 NC_014719 Caldicellulosiruptor kristjanssonii I77R1B plasmid pCALKR01, complete sequence 7974-8008 0 1.0
NC_014720_1 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2665074-2665108 35 NZ_CP014289 Bacillus thuringiensis strain Bt185 plasmid pBT1850046, complete sequence 36757-36791 6 0.829
NC_014720_1 1.53|2666921|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2666921-2666957 37 NZ_CP022047 Staphylococcus sciuri strain FDAARGOS_285 plasmid unnamed1, complete sequence 48568-48604 7 0.811
NC_014720_1 1.58|2667255|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2667255-2667291 37 NZ_CP015354 Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence 41099-41135 8 0.784
NC_014720_8 8.1|2791997|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2791997-2792031 35 MT661596 Proteus phage 10, complete genome 18369-18403 8 0.771
NC_014720_1 1.92|2669497|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2669497-2669533 37 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 853536-853572 9 0.757
NC_014720_1 1.106|2670426|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2670426-2670461 36 NZ_CP015198 Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence 217-252 9 0.75
NC_014720_1 1.106|2670426|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2670426-2670461 36 NZ_CP015198 Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence 3976-4011 9 0.75
NC_014720_1 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2674644-2674679 36 NZ_CP027443 Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence 24816-24851 9 0.75
NC_014720_1 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2674644-2674679 36 NZ_CP027590 Escherichia coli strain 2014C-3011 plasmid unnamed2 79063-79098 9 0.75
NC_014720_1 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2674644-2674679 36 NZ_AP018798 Escherichia coli strain E2855 plasmid pE2855-2, complete sequence 5908-5943 9 0.75
NC_014720_4 4.5|2745772|36|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2745772-2745807 36 NZ_CP021839 Anoxybacillus flavithermus strain 52-1A plasmid unnamed, complete sequence 17342-17377 9 0.75
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP007647 Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence 195006-195039 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP011404 Lactobacillus salivarius str. Ren plasmid pR1, complete sequence 130113-130146 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP020859 Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence 133877-133910 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP017108 Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence 105316-105349 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_LT604075 Lactobacillus salivarius isolate LPM01 plasmid II 115587-115620 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 MK250029 Prevotella phage Lak-C1, complete genome 382960-382993 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 MK250016 Prevotella phage Lak-A1, complete genome 417742-417775 9 0.735
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 MK250019 Prevotella phage Lak-A2, complete genome 336918-336951 9 0.735
NC_014720_1 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2674644-2674679 36 NZ_AP018809 Escherichia coli strain E2865 plasmid pE2865-1, complete sequence 7005-7040 10 0.722
NC_014720_5 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769921-2769955 35 NZ_CP046163 Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence 387904-387938 10 0.714
NC_014720_5 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769921-2769955 35 NZ_CP046066 Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence 572194-572228 10 0.714
NC_014720_5 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769921-2769955 35 NZ_CP045356 Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence 1188611-1188645 10 0.714
NC_014720_1 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2665074-2665108 35 MF448562 Lactococcus phage 56301, complete genome 28226-28260 11 0.686
NC_014720_1 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2665074-2665108 35 NC_021860 Lactococcus phage jm2, complete genome 27470-27504 11 0.686
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP025921 Escherichia coli strain 103605 plasmid p103605_146, complete sequence 43341-43374 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP025911 Escherichia coli strain 204446 plasmid p204446_146, complete sequence 142307-142340 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP023347 Escherichia coli strain ETEC-2265 plasmid unnamed1, complete sequence 106516-106549 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NC_022333 Escherichia coli plasmid pCss165Kan DNA, complete genome, strain: 4266 delta cssB::Km 123917-123950 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 CP025908 Escherichia coli strain 204576 plasmid p204576_146, complete sequence 70935-70968 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP025917 Escherichia coli strain 120899 plasmid p120899_146, complete sequence 110188-110221 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP025863 Escherichia coli strain 504237 plasmid p504237_142, complete sequence 18779-18812 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 NZ_CP025848 Escherichia coli strain 602354 plasmid p602354_148, complete sequence 78485-78518 11 0.676
NC_014720_5 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2769857-2769890 34 CP025968 Escherichia coli strain 2407 a plasmid p2407a_135, complete sequence 86845-86878 11 0.676
NC_014720_1 1.80|2668701|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR 2668701-2668736 36 NC_049466 Escherichia phage vB_EcoM_4HA13, complete genome 37074-37109 12 0.667
NC_014720_5 5.15|2770577|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2770577-2770610 34 NZ_CP042820 Octadecabacter sp. SW4 plasmid pow41, complete sequence 69118-69151 12 0.647
NC_014720_5 5.15|2770577|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2770577-2770610 34 NZ_CP031601 Roseovarius indicus strain DSM 26383 plasmid pRIdsm_03, complete sequence 51596-51629 12 0.647
NC_014720_3 3.7|2735544|37|NC_014720|PILER-CR,CRISPRCasFinder,CRT 2735544-2735580 37 MH999279 Clostridium phage CPD2, complete genome 9173-9209 13 0.649

1. spacer 1.12|2664210|38|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NC_012036 (Caldicellulosiruptor bescii DSM 6725 plasmid pATHE01, complete sequence) position: , mismatch: 0, identity: 1.0

gcaaatcgaaacattgcaaaaacaagtagactttttga	CRISPR spacer
gcaaatcgaaacattgcaaaaacaagtagactttttga	Protospacer
**************************************

2. spacer 5.1|2769662|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NC_014719 (Caldicellulosiruptor kristjanssonii I77R1B plasmid pCALKR01, complete sequence) position: , mismatch: 0, identity: 1.0

tcatttaaagcggtcttgtctacaattacatatgg	CRISPR spacer
tcatttaaagcggtcttgtctacaattacatatgg	Protospacer
***********************************

3. spacer 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014289 (Bacillus thuringiensis strain Bt185 plasmid pBT1850046, complete sequence) position: , mismatch: 6, identity: 0.829

atcgttgtaaaagaatatattgatgaagcggtatc	CRISPR spacer
attatcgatgaagaatatattgatgaagcggtatc	Protospacer
**..*.*  .*************************

4. spacer 1.53|2666921|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022047 (Staphylococcus sciuri strain FDAARGOS_285 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.811

ttttttaatactatcaatatattcaa---ttttattaatt	CRISPR spacer
tttttaaattctatcaatatattcaaacctttcataa---	Protospacer
***** *** ****************   ***.** *   

5. spacer 1.58|2667255|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 8, identity: 0.784

tgaaaaagaaattttagcaatgtata-tggtggttgaa	CRISPR spacer
tgaaaaagaaattttagaaatatatagtggaaaatgg-	Protospacer
***************** ***.**** *** .. **. 

6. spacer 8.1|2791997|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 8, identity: 0.771

---catacaagatcaacactctcacccaccttataacc	CRISPR spacer
gtgtttgc---atcaacaatatcacccaccttataacc	Protospacer
   . *.*   ******* * *****************

7. spacer 1.92|2669497|37|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.757

gatgaactatataaaacaactcaacgccttttatgat	CRISPR spacer
ttttaataatataaaagaactcaacgcattttatcaa	Protospacer
  * **. ******** ********** ****** * 

8. spacer 1.106|2670426|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015198 (Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.75

tatccctttattttcactttcttgaaaagcaaacca	CRISPR spacer
taattttttattttcactttctaaaaaagcaattct	Protospacer
** ...**************** .******** .* 

9. spacer 1.106|2670426|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015198 (Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.75

tatccctttattttcactttcttgaaaagcaaacca	CRISPR spacer
taattttttattttcactttctaaaaaagcaattct	Protospacer
** ...**************** .******** .* 

10. spacer 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

tataaaaattcactttcactatttatttctaagatg	CRISPR spacer
gataaaaattcactttcactgtttattttgtactca	Protospacer
 *******************.*******.  *  ..

11. spacer 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 9, identity: 0.75

tataaaaattcactttcactatttatttctaagatg	CRISPR spacer
gataaaaattcactttcactgtttattttgtactca	Protospacer
 *******************.*******.  *  ..

12. spacer 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 9, identity: 0.75

tataaaaattcactttcactatttatttctaagatg	CRISPR spacer
gataaaaattcactttcactgtttattttgtactca	Protospacer
 *******************.*******.  *  ..

13. spacer 4.5|2745772|36|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021839 (Anoxybacillus flavithermus strain 52-1A plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

aagagaaagaggaaaagaagcaaaaaagagtaaaga	CRISPR spacer
aagaggaagaggaaaagaagaaaaaagggttttggt	Protospacer
*****.************** *****.*. *  .* 

14. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007647 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
aatcaaatgaaaaaatattatttaggttttgatg	Protospacer
 * .*.************** ****** ** * .

15. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
aatcaaatgaaaaaatattatttaggttttgatg	Protospacer
 * .*.************** ****** ** * .

16. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
aatcaaatgaaaaaatattatttaggttttgatg	Protospacer
 * .*.************** ****** ** * .

17. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
aatcaaatgaaaaaatattatttaggttttgatg	Protospacer
 * .*.************** ****** ** * .

18. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
aatcaaatgaaaaaatattatttaggttttgatg	Protospacer
 * .*.************** ****** ** * .

19. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattagg---tattcaga	CRISPR spacer
tatgtaatgaaaaaatataaattaggaattattc---	Protospacer
.*   .************ *******   *****   

20. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattagg---tattcaga	CRISPR spacer
tatgtaatgaaaaaatataaattaggaattattc---	Protospacer
.*   .************ *******   *****   

21. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.735

cagtagatgaaaaaatattaattagg---tattcaga	CRISPR spacer
tatgtaatgaaaaaatataaattaggaattattc---	Protospacer
.*   .************ *******   *****   

22. spacer 1.170|2674644|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018809 (Escherichia coli strain E2865 plasmid pE2865-1, complete sequence) position: , mismatch: 10, identity: 0.722

tataaaaattcactttcactatttatttctaagatg	CRISPR spacer
gataaaaattcattttcactgtttattttgtactca	Protospacer
 ***********.*******.*******.  *  ..

23. spacer 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 10, identity: 0.714

tctttcaccctccaatgcagctttcaagtcttcaa	CRISPR spacer
taatcgcatgtccaatgcagctatcaagtcatcaa	Protospacer
*  *.   . ************ ******* ****

24. spacer 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 10, identity: 0.714

tctttcaccctccaatgcagctttcaagtcttcaa	CRISPR spacer
taatcgcatgtccaatgcagctatcaagtcatcaa	Protospacer
*  *.   . ************ ******* ****

25. spacer 5.5|2769921|35|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 10, identity: 0.714

tctttcaccctccaatgcagctttcaagtcttcaa	CRISPR spacer
taatcgcatgtccaatgcagctatcaagtcatcaa	Protospacer
*  *.   . ************ ******* ****

26. spacer 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to MF448562 (Lactococcus phage 56301, complete genome) position: , mismatch: 11, identity: 0.686

atcgttgtaaaagaatatattgatgaagcggtatc	CRISPR spacer
gaagttgtaaaagaatatattcatgtagacaaccc	Protospacer
.  ****************** *** **  .  .*

27. spacer 1.25|2665074|35|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NC_021860 (Lactococcus phage jm2, complete genome) position: , mismatch: 11, identity: 0.686

atcgttgtaaaagaatatattgatgaagcggtatc	CRISPR spacer
gaagttgtaaaagaatatattcatgtagataaccc	Protospacer
.  ****************** *** **  .  .*

28. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025921 (Escherichia coli strain 103605 plasmid p103605_146, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

29. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025911 (Escherichia coli strain 204446 plasmid p204446_146, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

30. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023347 (Escherichia coli strain ETEC-2265 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

31. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NC_022333 (Escherichia coli plasmid pCss165Kan DNA, complete genome, strain: 4266 delta cssB::Km) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

32. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to CP025908 (Escherichia coli strain 204576 plasmid p204576_146, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

33. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025917 (Escherichia coli strain 120899 plasmid p120899_146, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

34. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025863 (Escherichia coli strain 504237 plasmid p504237_142, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

35. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025848 (Escherichia coli strain 602354 plasmid p602354_148, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

36. spacer 5.4|2769857|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to CP025968 (Escherichia coli strain 2407 a plasmid p2407a_135, complete sequence) position: , mismatch: 11, identity: 0.676

cagtagatgaaaaaatattaattaggtattcaga	CRISPR spacer
gtttttatgaaaaaatatatattaggtattattc	Protospacer
   *  ************  **********    

37. spacer 1.80|2668701|36|NC_014720|CRISPRCasFinder,CRT,PILER-CR matches to NC_049466 (Escherichia phage vB_EcoM_4HA13, complete genome) position: , mismatch: 12, identity: 0.667

tccctcaactccataaatttcaattattcttcccct	CRISPR spacer
atggtcaacaccattaatttcaattattctgttttc	Protospacer
 .  ***** **** *************** .....

38. spacer 5.15|2770577|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042820 (Octadecabacter sp. SW4 plasmid pow41, complete sequence) position: , mismatch: 12, identity: 0.647

tcataatccagccctaaaatctcacaaactttaa	CRISPR spacer
agtggatccagccccaaaatctcgcaaacgcctt	Protospacer
    .*********.********.***** ..  

39. spacer 5.15|2770577|34|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031601 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_03, complete sequence) position: , mismatch: 12, identity: 0.647

tcataatccagccctaaaatctcacaaactttaa	CRISPR spacer
agtggatccagccccaaaatctcgcaaacgcctt	Protospacer
    .*********.********.***** ..  

40. spacer 3.7|2735544|37|NC_014720|PILER-CR,CRISPRCasFinder,CRT matches to MH999279 (Clostridium phage CPD2, complete genome) position: , mismatch: 13, identity: 0.649

acttgataggtggatatgtagatagtgacggggacgg	CRISPR spacer
gtcaaatagttggatatgtagatggtgacggttggtt	Protospacer
... .**** *************.*******  .   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 807808 : 861422 60 Sulfolobus_monocaudavirus(25.0%) transposase,coat,integrase attL 807718:807777|attR 842929:844292
DBSCAN-SWA_2 1425834 : 1437976 11 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 2586193 : 2596289 10 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage