CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017545	Listeria monocytogenes J0161, complete sequence	5 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csa3,csn2,cas1,cas9	4	29	7	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017545_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017545_1

514312-514890

Orphan

Consensus_repeat	Method
GATGTAAGTNATTTTGATACNAGTTCAGTAACT	CRT

7 spacers

The CRISPR arrays of NC_017545_1

>merge|NC_017545|1|514312-514890|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACAAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTGGATGTAAGCAACCTTGATACGAGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGTGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACT

>NC_017545|1|1|514312-514890|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACT	ACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACAAGTTCAGTAACT	AATATGTCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTG
GATGTAAGCAACCTTGATACGAGTTCAGTAACT	AATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACT	GATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACT	GCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACT	GATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGTGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACT	AATATGGCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017545.1\|WP_003721250.1\|511449_513519_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_017545.1\|WP_003721258.1\|518633_518969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
NC_017545.1\|WP_003721242.1\|502080_503028_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_017545.1\|WP_003721252.1\|515789_516263_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721245.1\|506196_507297_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NC_017545.1\|WP_003721241.1\|500927_502076_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_017545.1\|WP_003721256.1\|517983_518268_+\|DUF3130-domain-containing-protein	unknown	unknown	gnl\|CDD\|288220
NC_017545.1\|WP_003733941.1\|516795_517101_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NC_017545.1\|WP_003721239.1\|497898_498654_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NC_017545.1\|WP_003721255.1\|517176_517443_+\|transposase	unknown	unknown	unknown
NC_017545.1\|WP_003733213.1\|521082_521325_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721246.1\|507289_508840_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NC_017545.1\|WP_003721253.1\|516282_516768_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721240.1\|498771_500931_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NC_017545.1\|WP_003721249.1\|509659_511198_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NC_017545.1\|WP_003721244.1\|504912_506196_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NC_017545.1\|WP_003721261.1\|520331_520679_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721260.1\|520031_520304_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003734101.1\|503183_504779_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_017545.1\|WP_014601265.1\|518268_518637_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017545.1\|WP_003721250.1\|511449_513519_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.08206e-30
NC_017545.1\|WP_003721258.1\|518633_518969_+\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	1.40701e-17
NC_017545.1\|WP_003721242.1\|502080_503028_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NC_017545.1\|WP_003721245.1\|506196_507297_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NC_017545.1\|WP_003721241.1\|500927_502076_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.19872e-53
NC_017545.1\|WP_003733941.1\|516795_517101_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.04229e-05
NC_017545.1\|WP_003721239.1\|497898_498654_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	1.0462e-120
NC_017545.1\|WP_003721256.1\|517983_518268_+\|DUF3130-domain-containing-protein	gnl\|CDD\|288220	pfam11328, DUF3130, Protein of unknown function (DUF3130. This bacterial family of proteins has no known function.	4.16867e-42
NC_017545.1\|WP_003721246.1\|507289_508840_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.50918e-105
NC_017545.1\|WP_003721240.1\|498771_500931_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.41497e-28
NC_017545.1\|WP_003721249.1\|509659_511198_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.08327e-19
NC_017545.1\|WP_003721244.1\|504912_506196_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.12636e-95
NC_017545.1\|WP_003734101.1\|503183_504779_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.37236e-59

>NC_017545.1|WP_003721250.1|511449_513519_+|BspA-family-leucine-rich-repeat-surface-protein
MKKLSMRVILIVTVIFIACGSANVSIAQEMDIANKLPEEELGSLDTSNVNTEGVPQDKSAEVENLEEIPITDDLEQNPDVLEQPVADSDDSDLTVVDSGAYWTIYHNTANGEYSLHMFGNVPSSKPTAWNSYLNSIKHIEIEEATLIGDFSSYFRSFFFTALESVRIERSNLSGVKSFALAFYSSGIEKVIIRDNDYSTAPSLLTTEGMFKNCSNLTELDLSGLDTSAVTTMRDMFYSCSALEELDVSHFDTSSVTNMSYLFYDNEKLEKLDVSNFDTSLVTNMYAMFANCTSLEELDVSNFDTSSATDIYRMFESCVKLKKLDVSNFDTSSVTDMAYMFRNCSTLEKLDVSNFNTSSVTSMRAMFAGCTSLEALDISNFDTSSVTDMASMFLTCTSLEELDLSTFDTSLVDFMGYMFKDCTNLKTLYLNNFTDAASTIDMFTGTTSLTYLFVSHNFKVFNGLEDTNWYDEKNWVQFETVWQLQTYHWRQSEPIGYRKGAFLSLTMDAMGGQFEDMEEQKVQNKVFGDYWEEMLPVKDGHYFDGWYLDQYFTSKFDFSLPADASITIYAKWIENYTVVIPASIFLNETSELKVEGINRGDKTLSVGLNRTATSISESNELTLANTADTTVQCLAPLSWDGSENNPKNAILTLAPGSEITEGDAVMEIESPENIQAGKYTGNLVFSINYE
>NC_017545.1|WP_003721249.1|509659_511198_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVTYSGDRWPFSFVQYDEITDLLESCPKEIYRANSIDKGMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEITYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINRFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMRLLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIVYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NC_017545.1|WP_003721246.1|507289_508840_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRDTLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGANIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVRENDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGVAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVVQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NC_017545.1|WP_003721245.1|506196_507297_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTNSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NC_017545.1|WP_003721244.1|504912_506196_+|cytosine-permease
MTEKKTVEQAQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVVFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPILLFVCIYGLVVSLNNGGLAVVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMIAVGAILALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAIAGGLGTVLAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVTSWLVGAVIAGIPVILTFFPALPQLPNQPLIGIILSLAVYLVGAKVLSGKTNNVENLEGK
>NC_017545.1|WP_003734101.1|503183_504779_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEARVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKIDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHSSLVLTDNSFQVINSITWPRTRHWDFERVIETSKQIDEHELVQLHLDERDFYTARKPIFQDGMQAMHLFMMKEKGALTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRNNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKSLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRLLGGNNNNK
>NC_017545.1|WP_003721242.1|502080_503028_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NC_017545.1|WP_003721241.1|500927_502076_-|DUF58-domain-containing-protein
MLKKRLLLASRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISKAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEQASLLSRWERETK
>NC_017545.1|WP_003721240.1|498771_500931_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFTELTELSTATWIILFITLSLGSFFLRLKYYWTIPLHVVMIIIVSGIYYAKGGILAGNWLGSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAAFVFSSLMLPKKAPIFPDPIPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSGDVISFSSGDNFPIQLTEQTTGATNTAEISFASSSDYMPYPYGTQAVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIESYLSTSGTFTYSTDDAKETPMGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTPDKTPEQDNGSSSTGETPKKEEPKTETATSNVEIPSWVWWIPAGLVVALLALAIVFRRRIRGYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSARVDADLTTSEFSRLTKMYETQLYSKNLTEKVIAAEETQLVQQIIARLTK
>NC_017545.1|WP_003721239.1|497898_498654_-|DUF4866-family-protein
MTTIFPKEQNVTPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPNTLKLEMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NC_017545.1|WP_003721252.1|515789_516263_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NC_017545.1|WP_003721253.1|516282_516768_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NC_017545.1|WP_003733941.1|516795_517101_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQHMLPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NC_017545.1|WP_003721255.1|517176_517443_+|transposase
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTLLQIRELKQQKNKLEEEILFLNEAINLLESP
>NC_017545.1|WP_003721256.1|517983_518268_+|DUF3130-domain-containing-protein
MREIKVDERTFQQHATKLASESTGSYLPLKNGNMAYSRANSIDQLRSALIELVDVVEDFQHVTKKDASRLKKMGIAYAKQDQLMGQKINQLEVR
>NC_017545.1|WP_014601265.1|518268_518637_+|hypothetical-protein
MDSAHSQLEQQLQQIKKAKITAETDADQTRRKQNEQDWLEEDSNQLTQEKRVLLDFLRSGWQGEEASGFHRYLEEQQHEESQAWRRDLQDKRADLDTELQENKDKLHTLETKQATLQKEWSK
>NC_017545.1|WP_003721258.1|518633_518969_+|hypothetical-protein
MSRIDIAELNDFLHGLRSSNAEAKAMIRKIKEAAMDYAQDDRLKGEAVSTSKRYFTSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQEAMAKVSQL
>NC_017545.1|WP_003721260.1|520031_520304_+|hypothetical-protein
MTKKEQLYFLLNGLDNGEIEINNFTNQFMKIFDLEIDYDELSKEEYTILGNVSDMAARFSDSEEDLKLPNVYYSEKQIREEVTRSLEALA
>NC_017545.1|WP_003721261.1|520331_520679_+|hypothetical-protein
MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
>NC_017545.1|WP_003733213.1|521082_521325_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATSIVNVKKKEYLWSTMLFEGELVVLLSLIIVLV

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Crispr_ID: NC_017545_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017545_2

553387-553669

Unclear

NA:I-A

Consensus_repeat	Method
GTTTTAG---TTACTTATTTTGAA----ATGTAAAT	PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRT

4 spacers

cas6,cas8b2

The CRISPR arrays of NC_017545_2

>merge|NC_017545|2|553387-553669|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATAAACAGAAATGAAAGATGGTGAAGAAGTCCTTACCGTTTTAGTTACTTATTTTGAAATGTAAATTTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGCGTTTTAGTTACTTATTTTGAAATGTAAATCTAGAACAAAAGAAAAATCATGAGGGATATTTACGTTTTAGTTACTTATTTTGAAATGTAAATGGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAGGTTTTAGTTACTTATTATGAAATGTAAAT

>NC_017545|2|1|553387-553669|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>NC_017545|2|1|553387-553669|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>NC_017545|2|2|553387-553669|CRT
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017545.1\|WP_003721297.1\|554746_555427_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NC_017545.1\|WP_003721290.1\|548375_548774_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721287.1\|545197_547258_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NC_017545.1\|WP_003721286.1\|544438_545089_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NC_017545.1\|WP_003721301.1\|558593_559025_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_017545.1\|WP_003721302.1\|559071_560502_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NC_017545.1\|WP_003721293.1\|550493_550787_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NC_017545.1\|WP_003721294.1\|550801_552073_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NC_017545.1\|WP_003721288.1\|547261_547864_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NC_017545.1\|WP_003721291.1\|548784_549435_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NC_017545.1\|WP_003721304.1\|561789_562512_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_017545.1\|WP_003721303.1\|560622_561438_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_017545.1\|WP_003721292.1\|549431_550478_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NC_017545.1\|WP_003721298.1\|555451_555811_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NC_017545.1\|WP_003721300.1\|556657_558493_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NC_017545.1\|WP_003721295.1\|552212_553148_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_017545.1\|WP_003721299.1\|555817_556276_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NC_017545.1\|WP_003721305.1\|562527_564216_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_017545.1\|WP_009930754.1\|554060_554639_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721289.1\|547891_548359_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129

Protein	Function_ID	Function_description	E-value
NC_017545.1\|WP_003721297.1\|554746_555427_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NC_017545.1\|WP_003721287.1\|545197_547258_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80
NC_017545.1\|WP_003721302.1\|559071_560502_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.43469e-99
NC_017545.1\|WP_003721286.1\|544438_545089_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.40072e-62
NC_017545.1\|WP_003721301.1\|558593_559025_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NC_017545.1\|WP_003721293.1\|550493_550787_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NC_017545.1\|WP_003721294.1\|550801_552073_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NC_017545.1\|WP_003721291.1\|548784_549435_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NC_017545.1\|WP_003721304.1\|561789_562512_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NC_017545.1\|WP_003721303.1\|560622_561438_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NC_017545.1\|WP_003721292.1\|549431_550478_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NC_017545.1\|WP_003721298.1\|555451_555811_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NC_017545.1\|WP_003721300.1\|556657_558493_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.95498e-119
NC_017545.1\|WP_003721295.1\|552212_553148_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NC_017545.1\|WP_003721299.1\|555817_556276_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	8.31646e-13
NC_017545.1\|WP_003721305.1\|562527_564216_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NC_017545.1\|WP_003721288.1\|547261_547864_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.67992e-75
NC_017545.1\|WP_003721289.1\|547891_548359_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37

>NC_017545.1|WP_003721295.1|552212_553148_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NC_017545.1|WP_003721294.1|550801_552073_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NC_017545.1|WP_003721293.1|550493_550787_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NC_017545.1|WP_003721292.1|549431_550478_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NC_017545.1|WP_003721291.1|548784_549435_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NC_017545.1|WP_003721290.1|548375_548774_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NC_017545.1|WP_003721289.1|547891_548359_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NC_017545.1|WP_003721288.1|547261_547864_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVETIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NC_017545.1|WP_003721287.1|545197_547258_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NC_017545.1|WP_003721286.1|544438_545089_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NC_017545.1|WP_009930754.1|554060_554639_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NC_017545.1|WP_003721297.1|554746_555427_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NC_017545.1|WP_003721298.1|555451_555811_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NC_017545.1|WP_003721299.1|555817_556276_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGDAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NC_017545.1|WP_003721300.1|556657_558493_+|lmo0514-family-class-1-internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NC_017545.1|WP_003721301.1|558593_559025_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_017545.1|WP_003721302.1|559071_560502_-|CapA-family-protein
MKRRTYVIITGLVLIFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIKGGVTEYTYFDPF
>NC_017545.1|WP_003721303.1|560622_561438_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NC_017545.1|WP_003721304.1|561789_562512_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NC_017545.1|WP_003721305.1|562527_564216_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: NC_017545_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017545_3

568865-570900

Unclear

NA:I-A

Consensus_repeat	Method
GTTTTAA---CTACTTATTATGAA----ATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

31 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_017545_3

>merge|NC_017545|3|568865-570900|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTTGTTCGACGGCTTAGACAACCATCACGCTTCTTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATGGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGCGTTTTAACTACTTATTATGAAATGTAAATCACGTACTTTAATCGGCATCAAACCACCTCGATTTCGTTTTAACTACTTATTATGAAATCTAAATCAAGATATGCTAGAAATGGCGCAAATAGCGCGCGGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAATTAACGAGCCAATTAAACCATCTTCTTCTAGTAATGTTTTAACTACTTATTATGAAATCATAAA

>NC_017545|3|2|568865-570837|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>NC_017545|3|2|568865-570900|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NC_017545|3|3|568865-570900|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017545.1\|WP_003721319.1\|578853_580185_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NC_017545.1\|WP_003721302.1\|559071_560502_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NC_017545.1\|WP_003721306.1\|564205_565075_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_017545.1\|WP_003721308.1\|565902_568086_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_017545.1\|WP_003721317.1\|576447_576891_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721301.1\|558593_559025_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_017545.1\|WP_003721307.1\|565052_565835_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_017545.1\|WP_003721311.1\|570972_571341_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NC_017545.1\|WP_003721310.1\|568388_568667_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_017545.1\|WP_003733750.1\|571488_572904_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_017545.1\|WP_003721318.1\|576936_578598_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NC_017545.1\|WP_003721304.1\|561789_562512_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_017545.1\|WP_003721303.1\|560622_561438_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_017545.1\|WP_003721314.1\|573035_574040_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_017545.1\|WP_003721316.1\|575589_576342_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_017545.1\|WP_003721300.1\|556657_558493_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NC_017545.1\|WP_003721305.1\|562527_564216_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_017545.1\|WP_003721315.1\|574071_575388_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NC_017545.1\|WP_003721321.1\|581199_582675_+\|membrane-protein	unknown	unknown	unknown
NC_017545.1\|WP_003721320.1\|580229_580970_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381

Protein	Function_ID	Function_description	E-value
NC_017545.1\|WP_003721319.1\|578853_580185_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.98396e-75
NC_017545.1\|WP_003721302.1\|559071_560502_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.43469e-99
NC_017545.1\|WP_003721306.1\|564205_565075_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NC_017545.1\|WP_003721308.1\|565902_568086_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.13135e-60
NC_017545.1\|WP_003721301.1\|558593_559025_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NC_017545.1\|WP_003721307.1\|565052_565835_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NC_017545.1\|WP_003721311.1\|570972_571341_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NC_017545.1\|WP_003721310.1\|568388_568667_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NC_017545.1\|WP_003733750.1\|571488_572904_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.83532e-79
NC_017545.1\|WP_003721318.1\|576936_578598_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
NC_017545.1\|WP_003721304.1\|561789_562512_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NC_017545.1\|WP_003721303.1\|560622_561438_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NC_017545.1\|WP_003721314.1\|573035_574040_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20
NC_017545.1\|WP_003721316.1\|575589_576342_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
NC_017545.1\|WP_003721300.1\|556657_558493_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.95498e-119
NC_017545.1\|WP_003721305.1\|562527_564216_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NC_017545.1\|WP_003721315.1\|574071_575388_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_017545.1\|WP_003721320.1\|580229_580970_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51

>NC_017545.1|WP_003721310.1|568388_568667_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NC_017545.1|WP_003721308.1|565902_568086_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NC_017545.1|WP_003721307.1|565052_565835_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NC_017545.1|WP_003721306.1|564205_565075_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NC_017545.1|WP_003721305.1|562527_564216_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NC_017545.1|WP_003721304.1|561789_562512_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NC_017545.1|WP_003721303.1|560622_561438_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NC_017545.1|WP_003721302.1|559071_560502_-|CapA-family-protein
MKRRTYVIITGLVLIFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIKGGVTEYTYFDPF
>NC_017545.1|WP_003721301.1|558593_559025_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_017545.1|WP_003721300.1|556657_558493_+|lmo0514-family-class-1-internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NC_017545.1|WP_003721311.1|570972_571341_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NC_017545.1|WP_003733750.1|571488_572904_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NC_017545.1|WP_003721314.1|573035_574040_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NC_017545.1|WP_003721315.1|574071_575388_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NC_017545.1|WP_003721316.1|575589_576342_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>NC_017545.1|WP_003721317.1|576447_576891_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NC_017545.1|WP_003721318.1|576936_578598_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NC_017545.1|WP_003721319.1|578853_580185_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNVLKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NC_017545.1|WP_003721320.1|580229_580970_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NC_017545.1|WP_003721321.1|581199_582675_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Crispr_ID: NC_017545_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017545_4

2532876-2533037

Orphan

Consensus_repeat	Method
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NC_017545_4

>merge|NC_017545|4|2532876-2533037|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGGGATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACTTTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

>NC_017545|4|3|2532876-2533037|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	GATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACT
TTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017545.1\|WP_003733912.1\|2518160_2518580_-\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003732488.1\|2544618_2545545_-\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NC_017545.1\|WP_003723348.1\|2524481_2527757_-\|carbohydrate-binding-protein	unknown	unknown	gnl\|CDD\|224418
NC_017545.1\|WP_003723344.1\|2517415_2517985_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_017545.1\|WP_003723343.1\|2516474_2517371_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_017545.1\|WP_003732482.1\|2533444_2534188_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
NC_017545.1\|WP_003723350.1\|2529107_2529572_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NC_017545.1\|WP_003732481.1\|2529587_2531969_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NC_017545.1\|WP_003727926.1\|2533111_2533345_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NC_017545.1\|WP_003723928.1\|2541628_2542675_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NC_017545.1\|WP_003732487.1\|2543116_2544460_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|274109
NC_017545.1\|WP_003727923.1\|2535498_2536791_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_017545.1\|WP_003723924.1\|2536926_2538459_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_017545.1\|WP_003723346.1\|2523476_2524421_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NC_017545.1\|WP_003723927.1\|2540586_2541597_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_017545.1\|WP_003723349.1\|2528139_2529048_+\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017545.1\|WP_003723345.1\|2519529_2523462_-\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|224418
NC_017545.1\|WP_003772391.1\|2535222_2535396_-\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003723352.1\|2532002_2532749_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
NC_017545.1\|WP_003727924.1\|2534370_2535090_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NC_017545.1\|WP_003723928.1\|2541628_2542675_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	5.20149e-91
NC_017545.1\|WP_003732488.1\|2544618_2545545_-\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	7.63415e-121
NC_017545.1\|WP_003723348.1\|2524481_2527757_-\|carbohydrate-binding-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NC_017545.1\|WP_003723344.1\|2517415_2517985_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.8348e-39
NC_017545.1\|WP_003723343.1\|2516474_2517371_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.6084e-71
NC_017545.1\|WP_003723350.1\|2529107_2529572_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.29197e-92
NC_017545.1\|WP_003732481.1\|2529587_2531969_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_017545.1\|WP_003727926.1\|2533111_2533345_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.04836e-13
NC_017545.1\|WP_003732487.1\|2543116_2544460_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|274109	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., ). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations [Transcription, Transcription factors].	0
NC_017545.1\|WP_003727923.1\|2535498_2536791_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_017545.1\|WP_003723924.1\|2536926_2538459_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_017545.1\|WP_003723346.1\|2523476_2524421_-\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	4.02295e-06
NC_017545.1\|WP_003723927.1\|2540586_2541597_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NC_017545.1\|WP_003723349.1\|2528139_2529048_+\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.22542e-08
NC_017545.1\|WP_003723352.1\|2532002_2532749_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.8639e-136
NC_017545.1\|WP_003723345.1\|2519529_2523462_-\|DUF5110-domain-containing-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NC_017545.1\|WP_003732482.1\|2533444_2534188_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.94931e-122
NC_017545.1\|WP_003727924.1\|2534370_2535090_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.44979e-18

>NC_017545.1|WP_003723352.1|2532002_2532749_-|carboxylesterase
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
>NC_017545.1|WP_003732481.1|2529587_2531969_-|ribonuclease-R
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQGVAKESPKKKKRR
>NC_017545.1|WP_003723350.1|2529107_2529572_-|SsrA-binding-protein-SmpB
MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ
>NC_017545.1|WP_003723349.1|2528139_2529048_+|Rgg/GadR/MutR-family-transcriptional-regulator
MQNVGDTLKFIRKSKNLTQQEACTGALSRSNYQKIENNKIMPSMDRFIQLLLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDILLDVISKCDEYLATQNDYFISDIKASLEGILLVEKEHDFELARQKVTYIWDRLSEADELFWNDILILRNIFFIFENETAQHIVNRLIKQLKKYRYLHPTLPIEISLHVNRATYLILDEKYELALHYIEQSIKIAKQNHYYLQFCMAIAKKGIVLYKLGQKQDGKRFMQRALRVAKFLEEERILNGIKNEIDYFLHDELPVLSLNEFTKIDI
>NC_017545.1|WP_003723348.1|2524481_2527757_-|carbohydrate-binding-protein
MKRRTRKCSLVFILGILIFSCLSGFGTNVFAMDGEYHSPYGDDDLYSVQPTERSPRDPKAGEDVILNITTWPIEDGQNVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNMTATAGDFSPKLYLSFEDLDTLRMELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRMEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQKERTYLAVPFFVSANKYGMYVNSDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEAYMISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAFAPIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDTADNGKSMMRQMAMDYPEDINARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVDLWNGGIHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSVTIDGADVAKADTLGAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFAHLTNVSTASDHAGYTGTGFVAGFDAEKEAVEFDVDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTADWDTWSTIEVPVTLQAGNNQVVFDFEADDTAGINFDHVVFKK
>NC_017545.1|WP_003723346.1|2523476_2524421_-|hypothetical-protein
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTFIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENIEANGANITLFPDANYPNLTNADLSQNNFGFNIPKFVGMEALESINISDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIYQALDFIAPSKHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>NC_017545.1|WP_003723345.1|2519529_2523462_-|DUF5110-domain-containing-protein
MKKGMKQVCVSLAVVPLVWLNLGITQPLQVEVKAEETKKKETQKKANTETAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLANNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIAKEPARMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDNTAADSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTIVEGRRYVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNETEFRENINTYRAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMIGITKPRVVTNLEDGTATQQGKDAEANGYWYPGQSAYEDYAFPVTVRSIDPYNADERNWWWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVWQTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGMDTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKSSMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLAAPVLEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTINYEVNDDDWTDVPMFVKQGAIMPMQQPQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTSTFTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALENADGSGYAVGSDVYGAVTYVKVPAQADADTVITTSGSASIVQTGTYEMETGSNFADTVADKPVAEKTYVDGYDKDGAGTTIYANVKDSGDYNVDLTYKNASSDNQALSIFVNGEYVKQTTLKPNTDWSVQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLKVANDHWFYSGEGFVGGFGTAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNGDYNSRVTFPSKGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILFSAEPINSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQSAYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSKDDAAKAQMTVNNYDSSGGKTIDLVADDVWHYVTIKDVKVTKGNINTSFQMDSPGGTSIHIDNVRVMPSAE
>NC_017545.1|WP_003733912.1|2518160_2518580_-|hypothetical-protein
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKLENL
>NC_017545.1|WP_003723344.1|2517415_2517985_-|YdcF-family-protein
MRSLRKIVIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLILGAKVKGNPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASGLPATSQTFAKYKGMMREVLSITYAWVFDH
>NC_017545.1|WP_003723343.1|2516474_2517371_-|YafY-family-transcriptional-regulator
MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSQEILREKITLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLKITYIAMSGAETTREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIDKAIMEVEEKEYQPAEMKRIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKILEPASLQKDYKSEVEKLYFNLNC
>NC_017545.1|WP_003727926.1|2533111_2533345_-|preprotein-translocase-subunit-SecG
MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGKQKARGLELILHRTTIVLSVVFFAILIALAYFVQ
>NC_017545.1|WP_003732482.1|2533444_2534188_-|carboxylesterase
MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVHAPNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYDEIAIVGVAMGGVFALKMAESFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEARATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHDIVNDCEKDILEEDLIYFLDDLVWLEEKVV
>NC_017545.1|WP_003727924.1|2534370_2535090_-|alpha/beta-hydrolase
MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTNHQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMGKMQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTIYHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQKPKQLLQLIHSFFSNLSAEIHK
>NC_017545.1|WP_003772391.1|2535222_2535396_-|hypothetical-protein
MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINADMPQQQFHRRLMK
>NC_017545.1|WP_003727923.1|2535498_2536791_-|phosphopyruvate-hydratase
MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTGEYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPNKGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNVDVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEALETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEEMITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIANSILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTGAPTRTDRVAKYNQLLRIEDNLADLAEYHGNDTFYNLKK
>NC_017545.1|WP_003723924.1|2536926_2538459_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSVDAEVAFKPIEMKNVIGEVLSNEGLAQLRIAETEKYPHVTFFMNGGRNEEFPGESRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK
>NC_017545.1|WP_003723927.1|2540586_2541597_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMETASDSETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK
>NC_017545.1|WP_003723928.1|2541628_2542675_-|sugar-binding-transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLGKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK
>NC_017545.1|WP_003732487.1|2543116_2544460_-|RNA-polymerase-factor-sigma-54
MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKMTLADALKEQLHLMDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVGARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIASEMDVSLQDIQEVSDYIQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIEQRESTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENIGDISSTTIKKLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF
>NC_017545.1|WP_003732488.1|2544618_2545545_-|dipeptidase
MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEFVIASHSSAKAICAHPRNLDDEQIKAMIEHDAMIHVIFHPLFTTNDGVADIEDVIRHIDHICELGGMKNIGFGSDFDGIPDHVKGLEHAGKYQNFLETLGKHYTKEEVEGFASRNFLNHLPK

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Crispr_ID: NC_017545_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017545_5

2732100-2733388

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	PILER-CR

19 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_017545_5

>merge|NC_017545|5|2732100-2733388|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAACCCCTGTTAGTCATGGGGGGAAGAATATTCGTTTTGGTAGCATTCGAAATAACATAGCTCTAAAACCGAACGGCAGAGGAACAGTATTATGCGACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGCATTCTTGCTCTTGATCTTGACCTTGAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAACTATCCATCTTGCTATCTGTATATGCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTCTAACAATAAATGAATACATCAAAAAGAGATTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGTGCACGCAAAGGAAGGCACAACAGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGGCGTGTTCAAAAAATGAAAAGTGCCTTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTAGTATCTAATTCGTGTTAATATTTTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACGACGCCATCAACATGTGTTTGCGGATAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAATAAATCCATTCTGGTTCATCATCAAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGACATGGTTTTCTTATCTGCAACTTGCTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTCGGTCATTTAAAATATCAAGGCATAGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAACAACAGTTAACAGTGTTTATAACAACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTGTACTCATTAATTAATTCTTGCATTCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCAACATAATGCCTAGGGTTCCAAACGTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTGGGAAAGACTCTTCGTTCACTTCGTCTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTGTACATCCAATTTGTAGCTTGATAGATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACAACAGTGTATCGTTCATCAGAAACGGGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAAGTATCTTGTGAAAGCGAAAGAACCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_017545|5|4|2732100-2733388|CRISPRCasFinder
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAAC	CCCTGTTAGTCATGGGGGGAAGAATATTC
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_017545|5|4|2732100-2733388|CRT
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAAC	CCCTGTTAGTCATGGGGGGAAGAATATTC
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_017545|5|3|2732165-2733388|PILER-CR
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017545.1\|WP_003724014.1\|2717726_2718149_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017545.1\|WP_003723648.1\|2734168_2734510_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_017545.1\|WP_003723646.1\|2731211_2731574_-\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003723669.1\|2742387_2743185_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_017545.1\|WP_003723649.1\|2734506_2735373_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_017545.1\|WP_003724015.1\|2718164_2718590_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NC_017545.1\|WP_003724017.1\|2719370_2719976_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003723645.1\|2730667_2731090_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_017545.1\|WP_003723650.1\|2735373_2739378_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_017545.1\|WP_003723642.1\|2726930_2727959_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_017545.1\|WP_003723652.1\|2740589_2740982_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_017545.1\|WP_003723651.1\|2739887_2740367_-\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003733032.1\|2741635_2742382_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_017545.1\|WP_003723643.1\|2728226_2729753_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NC_017545.1\|WP_003723644.1\|2729794_2730646_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NC_017545.1\|WP_003724016.1\|2718604_2719312_+\|hypothetical-protein	unknown	unknown	unknown
NC_017545.1\|WP_003727703.1\|2741003_2741441_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_017545.1\|WP_003723670.1\|2743187_2744054_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NC_017545.1\|WP_003724018.1\|2720038_2721202_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017545.1\|WP_003723647.1\|2733516_2734179_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408

Protein	Function_ID	Function_description	E-value
NC_017545.1\|WP_003724014.1\|2717726_2718149_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10783e-14
NC_017545.1\|WP_003723669.1\|2742387_2743185_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.70432e-53
NC_017545.1\|WP_003723649.1\|2734506_2735373_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.51602e-136
NC_017545.1\|WP_003724015.1\|2718164_2718590_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	6.38766e-17
NC_017545.1\|WP_003723645.1\|2730667_2731090_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.26033e-42
NC_017545.1\|WP_003723650.1\|2735373_2739378_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_017545.1\|WP_003723642.1\|2726930_2727959_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.13281e-115
NC_017545.1\|WP_003723652.1\|2740589_2740982_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
NC_017545.1\|WP_003733032.1\|2741635_2742382_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
NC_017545.1\|WP_003723643.1\|2728226_2729753_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	5.31629e-69
NC_017545.1\|WP_003723644.1\|2729794_2730646_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	5.13526e-171
NC_017545.1\|WP_003723648.1\|2734168_2734510_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
NC_017545.1\|WP_003727703.1\|2741003_2741441_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NC_017545.1\|WP_003723670.1\|2743187_2744054_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NC_017545.1\|WP_003724018.1\|2720038_2721202_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.83105e-40
NC_017545.1\|WP_003723647.1\|2733516_2734179_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.33437e-112

>NC_017545.1|WP_003723646.1|2731211_2731574_-|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>NC_017545.1|WP_003723645.1|2730667_2731090_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERNKF
>NC_017545.1|WP_003723644.1|2729794_2730646_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDVFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>NC_017545.1|WP_003723643.1|2728226_2729753_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKKQEVIWSAPYNTEDANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKINYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>NC_017545.1|WP_003723642.1|2726930_2727959_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPCLS
>NC_017545.1|WP_003724018.1|2720038_2721202_+|site-specific-integrase
MASYVNLGNNKYELRVSKGYDARGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITEDGYSEAAKTFDNFYKSSK
>NC_017545.1|WP_003724017.1|2719370_2719976_+|hypothetical-protein
MSKYRHLLKKWWLWVIFLLVIIGIVSLFWYTQVYSSEWGKGLSKEDKEVLEKANKSTNEFNKFAKEANSGIKSFNNDATINPQIVINPFTKMGDNITERSDEFIKDYDEYSISIQNILKDDYNNIKKLRDDVVAQQEEIKSIYSNAHNYNRELSTVESRIVENIYQEMHKEQKESLGLKNHEFKKNAEFSDKAIKLMPGVD
>NC_017545.1|WP_003724016.1|2718604_2719312_+|hypothetical-protein
MKKWIVLCFILLLSLVLYACGEPELDISDSTGKGYYLNQTGKTSDNAKITLKDENGDSKKIETDNNSFTMLFPRLNSKATYTVLAEKDEKTSETEIVVPKQKKLVSYEDLQGQFNYIFETEDDLSISLPESVTSDAEVTNGFKIMSDGNNVMSLLLTYSSNDKIGITDYNDFTYSIAAIMMSLDSENGLDKVLNALNNSMDDQKDTKVSVNEITYQFSTINTSSTNLTTLEIYPS
>NC_017545.1|WP_003724015.1|2718164_2718590_+|ImmA/IrrE-family-metallo-endopeptidase
MEMSEFIQQQIQKLVNIHETRNPFLIAKEKDILILKEDLGEVYGYYNKINRIKMIHLNNLFSDERQLFTCAHELCHALIHQDENTPQLSKQTIVSEWKVEKEANYFATQLLIDGSHLEHYIDTTDKIINFYGLPEEMKKYI
>NC_017545.1|WP_003724014.1|2717726_2718149_+|helix-turn-helix-transcriptional-regulator
MFGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILGETDKKQYWELDDKDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSLRIAKEESKKRFTPKKYRK
>NC_017545.1|WP_003723647.1|2733516_2734179_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTRFFYQYEETEELTIFGATHQPLKSSELMLITDVLGHDINSAATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEIMVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDPDYFLHVENSV
>NC_017545.1|WP_003723648.1|2734168_2734510_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>NC_017545.1|WP_003723649.1|2734506_2735373_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWEAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHETLAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSVFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NC_017545.1|WP_003723650.1|2735373_2739378_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTNQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHDNYRTIYHLREKLVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIETYNQVFMSNIEEGALAKVEENIEVANILAGKFTRREKFERILQLYPGEKSTGMFAQFISLIVGSKGNFQKVFDLIEKTDIECAKDSYEEDLETLLAIIGDEYAELFVAAKNTYNAVVLSSIITVTDTETNAKLSASMIERFDAHEKDLVELKAFIKLNLPKQYEEIFSNAAIDGYAGYIDGKTKQVDFYKYLKTILENIEGSDYFIAKIEEENFLRKQRTFDNGAIPHQLHLEELEAIIHQQAKYYPFLKEDYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQVFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKPMIKEQLQQFSDVLDGGVLKKLERRHYTGWGRLSAKLLVGIREKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVAELAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILYQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNGYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQMNIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPMKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYRHPKVLTKLPKYTLYECEKGRRRMLASANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATRYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>NC_017545.1|WP_003723651.1|2739887_2740367_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEEEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKEILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDSSIFLALSKNTNLIEGLKDNYPDSEDLSTYNSDID
>NC_017545.1|WP_003723652.1|2740589_2740982_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NC_017545.1|WP_003727703.1|2741003_2741441_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NC_017545.1|WP_003733032.1|2741635_2742382_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NC_017545.1|WP_003723669.1|2742387_2743185_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRILRWRFADTFLLISLAVLSGLLFWLRS
>NC_017545.1|WP_003723670.1|2743187_2744054_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKQKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTSEMAPYLAKGGA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	NC_017545.1	2376518-2376553	0	1.0
NC_017545_5	5.4\|2732333\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	NC_017545.1	2365027-2365056	0	1.0
NC_017545_3	3.9\|569414\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	NC_017545.1	2364962-2364997	1	0.972
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NC_017545.1	2367051-2367080	1	0.967

1. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to position: 2376518-2376553, mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

2. spacer 5.4|2732333|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to position: 2365027-2365056, mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

3. spacer 3.9|569414|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to position: 2364962-2364997, mismatch: 1, identity: 0.972

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtagtacacctcaat	Protospacer
************************.***********

4. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to position: 2367051-2367080, mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017545_3	3.9\|569414\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NC_017545_3	3.9\|569414\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NC_017545_3	3.13\|569671\|34\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569671-569704	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NC_017545_3	3.13\|569671\|34\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569671-569704	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	KP399678	Listeria phage vB_LmoS_293, complete genome	6980-7015	0	1.0
NC_017545_5	5.4\|2732333\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	NC_003216	Listeria phage A118, complete genome	18504-18533	0	1.0
NC_017545_5	5.4\|2732333\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	AJ242593	Bacteriophage A118 complete genome	18504-18533	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MN172529	Listeria phage LP-039, complete genome	125154-125183	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ591604	Listeria phage LMTA-148, complete genome	2823-2852	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094033	Listeria phage LP-048, complete genome	127611-127640	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MN128594	Listeria phage LP-066, complete genome	126014-126043	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_042048	Listeria phage LMTA-34, complete genome	3149-3178	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094030	Listeria phage LP-083-2, complete genome	131180-131209	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_024360	Listeria phage LMSP-25, complete genome	3149-3178	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	125046-125075	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094031	Listeria phage LP-124, complete genome	93295-93324	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_025440	Listeria phage WIL-1, complete genome	41574-41603	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_047872	Listeria phage LMTA-94, complete genome	7851-7880	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ591605	Listeria phage LMTA-57, complete genome	18226-18255	0	1.0
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ535721	Listeria phage List-36, complete genome	2656-2685	0	1.0
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT438761	Listeria virus P61, complete genome	6334-6363	0	1.0
NC_017545_5	5.13\|2732927\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732927-2732956	30	KP399678	Listeria phage vB_LmoS_293, complete genome	3977-4006	0	1.0
NC_017545_5	5.14\|2732993\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	38055-38084	0	1.0
NC_017545_5	5.14\|2732993\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	37522-37551	0	1.0
NC_017545_5	5.14\|2732993\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	KP399677	Listeria phage vB_LmoS_188, complete genome	37313-37342	0	1.0
NC_017545_5	5.17\|2733191\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	5858-5887	0	1.0
NC_017545_3	3.3\|569024\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
NC_017545_3	3.3\|569024\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	NC_003216	Listeria phage A118, complete genome	6982-7017	1	0.972
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	AJ242593	Bacteriophage A118 complete genome	6982-7017	1	0.972
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	6993-7028	1	0.972
NC_017545_3	3.27\|570577\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570577-570612	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
NC_017545_3	3.27\|570577\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570577-570612	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NC_017545_5	5.7\|2732531\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	19214-19243	1	0.967
NC_017545_5	5.7\|2732531\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	DQ003641	Listeria phage P35, complete genome	35344-35373	1	0.967
NC_017545_5	5.8\|2732597\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	25335-25364	1	0.967
NC_017545_5	5.8\|2732597\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	DQ003637	Listeria phage A500, complete genome	26869-26898	1	0.967
NC_017545_5	5.10\|2732729\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732729-2732758	30	KJ094023	Listeria phage LP-101, complete genome	13135-13164	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	126453-126482	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT178766	Listeria virus P100plus, complete genome	91489-91518	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	DQ003638	Listeria phage A511, complete genome	125675-125704	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT178767	Listeria virus P200, complete genome	91490-91519	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	DQ004855	Listeria bacteriophage P100, complete genome	91484-91513	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_041862	Listeria phage LP-064, complete genome	134499-134528	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	JX126918	Listeria phage LP-125, complete genome	134501-134530	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	10033-10062	1	0.967
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ668717	Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds	3343-3372	1	0.967
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	7289-7318	1	0.967
NC_017545_5	5.14\|2732993\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	KP399678	Listeria phage vB_LmoS_293, complete genome	39597-39626	1	0.967
NC_017545_5	5.17\|2733191\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	2013-2042	1	0.967
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NC_003216	Listeria phage A118, complete genome	16480-16509	1	0.967
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	AJ242593	Bacteriophage A118 complete genome	16480-16509	1	0.967
NC_017545_3	3.3\|569024\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
NC_017545_3	3.8\|569349\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569349-569384	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
NC_017545_3	3.14\|569734\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569734-569769	36	KJ094022	Listeria phage LP-030-3, complete genome	38302-38337	2	0.944
NC_017545_3	3.16\|569864\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569864-569899	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	DQ003637	Listeria phage A500, complete genome	6959-6994	2	0.944
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NC_017545_3	3.28\|570642\|37\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NC_017545_5	5.10\|2732729\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732729-2732758	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	222662-222691	2	0.933
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT438761	Listeria virus P61, complete genome	2356-2385	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	130424-130453	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_041862	Listeria phage LP-064, complete genome	3238-3267	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	JX126918	Listeria phage LP-125, complete genome	3238-3267	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	582-611	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT178766	Listeria virus P100plus, complete genome	95444-95473	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_025440	Listeria phage WIL-1, complete genome	38923-38952	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_047872	Listeria phage LMTA-94, complete genome	3174-3203	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT178767	Listeria virus P200, complete genome	95445-95474	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	DQ004855	Listeria bacteriophage P100, complete genome	95437-95466	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ591605	Listeria phage LMTA-57, complete genome	13555-13584	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MN128594	Listeria phage LP-066, complete genome	130914-130943	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_042048	Listeria phage LMTA-34, complete genome	7886-7915	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094030	Listeria phage LP-083-2, complete genome	305-334	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_024360	Listeria phage LMSP-25, complete genome	7886-7915	2	0.933
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094031	Listeria phage LP-124, complete genome	98190-98219	2	0.933
NC_017545_5	5.13\|2732927\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732927-2732956	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	4024-4053	2	0.933
NC_017545_3	3.1\|568894\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	568894-568929	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
NC_017545_3	3.15\|569799\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569799-569834	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MN172529	Listeria phage LP-039, complete genome	129216-129245	3	0.9
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	DQ003638	Listeria phage A511, complete genome	128345-128374	3	0.9
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ591604	Listeria phage LMTA-148, complete genome	5611-5640	3	0.9
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094033	Listeria phage LP-048, complete genome	131673-131702	3	0.9
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	129041-129070	3	0.9
NC_017545_3	3.15\|569799\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569799-569834	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NC_017545_5	5.16\|2733125\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	209438-209467	5	0.833
NC_017545_5	5.16\|2733125\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	86777-86806	5	0.833
NC_017545_3	3.12\|569608\|34\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569608-569641	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NC_017545_3	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	KJ094022	Listeria phage LP-030-3, complete genome	15373-15408	6	0.833
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	142013-142042	6	0.8
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NC_041973	Erwinia phage vB_EamM_RAY, complete genome	97903-97932	6	0.8
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NC_042098	Erwinia phage vB_EamM_Desertfox, complete genome	98325-98354	6	0.8
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MG655267	Erwinia phage vB_EamM_Bosolaphorus, complete genome	98238-98267	6	0.8
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	3191-3220	6	0.8
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	CP031025	Lactobacillus phage ViSo-2018b, partial genome	5042-5071	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	25104-25133	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	52279-52308	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	36024-36053	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	65169-65198	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	36481-36510	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	AP014859	Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61	125738-125767	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	AP014861	Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61	73236-73265	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034287	Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-1, complete sequence	12210-12239	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP046413	Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence	111674-111703	6	0.8
NC_017545_5	5.12\|2732861\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	91576-91605	6	0.8
NC_017545_5	5.17\|2733191\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	AP014346	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, * SEQUENCING IN PROGRESS *	30872-30901	6	0.8
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_KY290886	Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence	64389-64418	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP027515	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence	21254-21283	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	113574-113603	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MT701594	Streptomyces phage Spernnie, complete genome	7197-7226	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MK433268	Streptomyces phage Popy, complete genome	7002-7031	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MF467948	Streptomyces phage DrGrey, complete genome	7002-7031	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN586054	Streptomyces phage FrodoSwaggins, complete genome	7002-7031	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN204504	Streptomyces phage Soshi, complete genome	7002-7031	7	0.767
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	NZ_CP027463	Escherichia coli isolate 07-4299 plasmid unnamed	104966-104995	7	0.767
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	MH356730	Staphylococcus phage VB-SauS-SA2, complete genome	40543-40572	7	0.767
NC_017545_5	5.7\|2732531\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1489905-1489934	7	0.767
NC_017545_5	5.8\|2732597\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	NZ_CP028888	Borrelia turcica IST7 plasmid cp33, complete sequence	17581-17610	7	0.767
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_KY888886	Acinetobacter pittii strain IHIT24944 plasmid pAP24944-OXA-58, complete sequence	13227-13256	7	0.767
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_CP033131	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA58_010062, complete sequence	11597-11626	7	0.767
NC_017545_5	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_CP032281	Acinetobacter sp. WCHA55 plasmid p2_010055, complete sequence	5197-5226	7	0.767
NC_017545_5	5.19\|2733323\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733323-2733352	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	880388-880417	7	0.767
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	67660-67689	8	0.733
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	GQ919031	Streptomyces phage ZL12, complete genome	40400-40429	8	0.733
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN204492	Streptomyces phage GirlPower, complete genome	8525-8554	8	0.733
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	NZ_MF477836	Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence	32562-32591	8	0.733
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP014435	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, * SEQUENCING IN PROGRESS *, 2 ordered pieces	10770-10799	8	0.733
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP013443	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7	19661-19690	8	0.733
NC_017545_5	5.5\|2732399\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP014428	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, * SEQUENCING IN PROGRESS *, 7 ordered pieces	8975-9004	8	0.733
NC_017545_5	5.16\|2733125\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1345009-1345038	8	0.733
NC_017545_3	3.12\|569608\|34\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569608-569641	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NC_017545_3	3.17\|569929\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569929-569963	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NC_017545_3	3.29\|570708\|35\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NC_017545_5	5.3\|2732267\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	113568-113597	9	0.7
NC_017545_5	5.7\|2732531\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	412741-412770	9	0.7
NC_017545_5	5.11\|2732795\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NZ_CP026119	Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence	93109-93138	9	0.7
NC_017545_5	5.17\|2733191\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	152644-152673	9	0.7
NC_017545_5	5.17\|2733191\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	NZ_CP047244	Trichormus variabilis 0441 plasmid unnamed2, complete sequence	86875-86904	9	0.7
NC_017545_3	3.26\|570514\|34\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570514-570547	34	NZ_CP034816	Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence	26153-26186	11	0.676

1. spacer 3.9|569414|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

2. spacer 3.9|569414|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

3. spacer 3.13|569671|34|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

4. spacer 3.13|569671|34|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

5. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

6. spacer 5.4|2732333|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

7. spacer 5.4|2732333|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

8. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

9. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

10. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

11. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

12. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

13. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

14. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

15. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

16. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

17. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

18. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

19. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

20. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

21. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataga	Protospacer
******************************

22. spacer 5.13|2732927|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gaacaacagttaacagtgtttataacaaca	CRISPR spacer
gaacaacagttaacagtgtttataacaaca	Protospacer
******************************

23. spacer 5.14|2732993|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

24. spacer 5.14|2732993|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

25. spacer 5.14|2732993|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

26. spacer 5.17|2733191|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 0, identity: 1.0

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
gtgtacatccaatttgtagcttgatagatg	Protospacer
******************************

27. spacer 3.3|569024|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

28. spacer 3.3|569024|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

29. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

30. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

31. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

32. spacer 3.27|570577|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

33. spacer 3.27|570577|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

34. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

35. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

36. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

37. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

38. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

39. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

40. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

41. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

42. spacer 5.7|2732531|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 1, identity: 0.967

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
tggcgtgttcaaaaaatgaaaagtaccttg	Protospacer
************************.*****

43. spacer 5.7|2732531|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 1, identity: 0.967

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
tggcgtgttcaaaaaatgaaaagtaccttg	Protospacer
************************.*****

44. spacer 5.8|2732597|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.967

ttagtatctaattcgtgttaatattttttt	CRISPR spacer
ttagtatctaattcatgttaatattttttt	Protospacer
**************.***************

45. spacer 5.8|2732597|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

ttagtatctaattcgtgttaatattttttt	CRISPR spacer
ttagtatctaattcatgttaatattttttt	Protospacer
**************.***************

46. spacer 5.10|2732729|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.967

taataaatccattctggttcatcatcaaaa	CRISPR spacer
taataaatccattctggttcatcatcaaag	Protospacer
*****************************.

47. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

48. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

49. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatccgcaacttgctta	Protospacer
*****************.************

50. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

51. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

52. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

53. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

54. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatccgcaacttgctta	Protospacer
*****************.************

55. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ668717 (Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttgtctgcaacttgctta	Protospacer
**************.***************

56. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcataga	Protospacer
***.**************************

57. spacer 5.14|2732993|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.967

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ttgtactcattaattaattcttgcattctc	Protospacer
.*****************************

58. spacer 5.17|2733191|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 1, identity: 0.967

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
gtatacatccaatttgtagcttgatagatg	Protospacer
**.***************************

59. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

60. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

61. spacer 3.3|569024|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

62. spacer 3.8|569349|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

63. spacer 3.14|569734|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

64. spacer 3.16|569864|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

65. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

66. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

67. spacer 3.28|570642|37|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

68. spacer 5.10|2732729|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.933

taataaatccattctggttcatcatcaaaa	CRISPR spacer
taataaatccattccggttcatcatcaaag	Protospacer
**************.**************.

69. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgtgacttgctta	Protospacer
*******************..*********

70. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

71. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

72. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

73. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

74. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

75. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

76. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

77. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

78. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

79. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

80. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

81. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

82. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

83. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

84. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

85. spacer 5.13|2732927|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.933

gaacaacagttaacagtgtttataacaaca	CRISPR spacer
gaacaacagttaacagtgtttataacagcg	Protospacer
***************************.*.

86. spacer 3.1|568894|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

87. spacer 3.15|569799|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

88. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

89. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

90. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

91. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

92. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

93. spacer 3.15|569799|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

94. spacer 5.16|2733125|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.833

ctgggaaagactcttcgttcacttcgtctt	CRISPR spacer
cggggaaagactcttcgatcgcttcgtcga	Protospacer
* *************** **.*******

95. spacer 5.16|2733125|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 5, identity: 0.833

ctgggaaagactcttcgttcacttcgtctt	CRISPR spacer
cggggaaagactcttcgatcgcttcgtcga	Protospacer
* *************** **.*******

96. spacer 3.12|569608|34|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

97. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

98. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

99. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
tgttttcttgatcttgatcttgatcttgat	Protospacer
 *. ****** ************.*****

100. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_041973 (Erwinia phage vB_EamM_RAY, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

101. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_042098 (Erwinia phage vB_EamM_Desertfox, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

102. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MG655267 (Erwinia phage vB_EamM_Bosolaphorus, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

103. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 6, identity: 0.8

--ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
ctgcca--cttgcccttgaccttgaccttgac	Protospacer
  * **  *****.*****.***********

104. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to CP031025 (Lactobacillus phage ViSo-2018b, partial genome) position: , mismatch: 6, identity: 0.8

ttctaacaataaat----gaatacatcaaaaaga	CRISPR spacer
----aacagtaagtaaaagaatacatcaaaaaga	Protospacer
    ****.***.*    ****************

105. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

106. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

107. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

108. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

109. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

110. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP014859 (Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

111. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP014861 (Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

112. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034287 (Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

113. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046413 (Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

114. spacer 5.12|2732861|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

115. spacer 5.17|2733191|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP014346 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
tgataaatccaattagtagcttgatagata	Protospacer
  .** ******** **************.

116. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
attactaatgctcttgatctagaccttgaa	Protospacer
. .*.*  ************ *********

117. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
attactaatgctcttgatctagaccttgaa	Protospacer
. .*.*  ************ *********

118. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
acccatcttgatcttgatcttgatcttgat	Protospacer
. *  ***** ************.*****

119. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MT701594 (Streptomyces phage Spernnie, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gatcttcttgcgcttgaccttgaccttggg	Protospacer
*.. ******* *****.**********..

120. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MK433268 (Streptomyces phage Popy, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

121. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MF467948 (Streptomyces phage DrGrey, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

122. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN586054 (Streptomyces phage FrodoSwaggins, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

123. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN204504 (Streptomyces phage Soshi, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

124. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027463 (Escherichia coli isolate 07-4299 plasmid unnamed) position: , mismatch: 7, identity: 0.767

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
ataaaacaataaatgaaaacatcgaaaaac	Protospacer
 *  ************* *****.****.

125. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MH356730 (Staphylococcus phage VB-SauS-SA2, complete genome) position: , mismatch: 7, identity: 0.767

ttctaa----caataaatgaatacatcaaaaaga	CRISPR spacer
----aaagttaaatgaatgaatacattaaaaaga	Protospacer
    **     ***.***********.*******

126. spacer 5.7|2732531|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.767

---tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
cctctgcg---tcataaaatgaaaagtgcctta	Protospacer
   . ***   *** *****************.

127. spacer 5.8|2732597|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028888 (Borrelia turcica IST7 plasmid cp33, complete sequence) position: , mismatch: 7, identity: 0.767

---ttagtatctaattcgtgttaatattttttt	CRISPR spacer
aatttag---ctaatttgtgttaatattttaac	Protospacer
   ****   ******.*************  .

128. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY888886 (Acinetobacter pittii strain IHIT24944 plasmid pAP24944-OXA-58, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

129. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033131 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA58_010062, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

130. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032281 (Acinetobacter sp. WCHA55 plasmid p2_010055, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

131. spacer 5.19|2733323|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

caaaagtatcttgtgaaagcgaaagaacca	CRISPR spacer
cgctattatcttttgaaagccaaagaacct	Protospacer
*.  * ****** ******* ********

132. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gatcttcctgctcttgatgttgaccttccg	Protospacer
*.. ***.********** ********  .

133. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cccgttcttgcccttgaccttgaccttctt	Protospacer
  *.*******.*****.*********

134. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to MN204492 (Streptomyces phage GirlPower, complete genome) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gttgctcttgctcttgctctcgaccttggc	Protospacer
* ...*********** ***.*******.

135. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF477836 (Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
ataatgaaataaatgaatacatcaataata	Protospacer
 *   . ****************** ** *

136. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP014435 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

137. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP013443 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

138. spacer 5.5|2732399|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to AP014428 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

139. spacer 5.16|2733125|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

ctgggaa-----agactcttcgttcacttcgtctt	CRISPR spacer
-----aatcgttgaactcttcgatcacttcgtctt	Protospacer
     **     ..******** ************

140. spacer 3.12|569608|34|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

141. spacer 3.17|569929|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

142. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

143. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

144. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

145. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

146. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

147. spacer 3.29|570708|35|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

148. spacer 5.3|2732267|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

ggcattcttgctcttgatcttgaccttgaa------	CRISPR spacer
------cttgatcttgatcttgatcttgatcttgat	Protospacer
      **** ************.*****

149. spacer 5.7|2732531|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
aatggaaaacaaaaaatgaaaagcgccttg	Protospacer
 .  * .  **************.******

150. spacer 5.11|2732795|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026119 (Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence) position: , mismatch: 9, identity: 0.7

gacatggttttcttatctgcaacttgctta	CRISPR spacer
agagacgttttcttatgagcaacttgcttc	Protospacer
.. .  **********  ***********

151. spacer 5.17|2733191|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.7

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
actatcatcgaatttgtagcttgatatctt	Protospacer
..   **** ****************  *

152. spacer 5.17|2733191|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047244 (Trichormus variabilis 0441 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
actatcatcgaatttgtagcttgatatctt	Protospacer
..   **** ****************  *

153. spacer 3.26|570514|34|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126289 : 132814

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|126289_126742_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|126747_127083_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003721741.1\|127299_127728_+	hypothetical protein	NA	NA	NA	NA
WP_003721742.1\|127739_128156_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
WP_003733902.1\|128433_128823_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|128835_129348_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|129395_129698_+	hypothetical protein	NA	NA	NA	NA
WP_020246385.1\|129739_130144_+	hypothetical protein	NA	NA	NA	NA
WP_003721747.1\|130130_131999_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	1.7e-19	45.3
WP_003721748.1\|131995_132814_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1145120 : 1154078

Hokovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1145120_1145504_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003721507.1\|1145525_1146509_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.1e-12	35.3
WP_003721508.1\|1146523_1147537_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_003721509.1\|1147745_1149236_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003721510.1\|1149247_1150072_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.2e-67	52.6
WP_003721511.1\|1150084_1150393_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003721512.1\|1150452_1150857_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_014601274.1\|1150985_1152542_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	28.1
WP_003721514.1\|1152674_1154078_+	SIR2 family protein	Q38324	Lactococcus_phage	9.2e-18	26.0

DBSCAN-SWA_3

1285961 : 1345505

Bacillus_virus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723562.1\|1285961_1287101_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1287181_1287577_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1287727_1287943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|1288061_1288595_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1288612_1289278_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1289539_1290478_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1290592_1291876_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1292061_1293321_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1293439_1294006_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1294040_1294610_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1294711_1295254_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1295263_1296127_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|1296123_1296909_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1297042_1297903_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003732799.1\|1298173_1300252_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_003723999.1\|1300314_1301619_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003724000.1\|1301901_1302804_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1302824_1303364_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003732800.1\|1303377_1304787_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	3.7e-43	28.7
WP_003726695.1\|1304807_1305587_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003724129.1\|1305689_1306109_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1306130_1306442_+	hypothetical protein	NA	NA	NA	NA
WP_003724131.1\|1306444_1307317_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1307358_1307955_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1308112_1308520_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1308700_1310668_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_003723732.1\|1310664_1313124_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.6
WP_003723733.1\|1313206_1313674_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003723734.1\|1314003_1315833_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_003723735.1\|1316164_1317967_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003723736.1\|1318000_1319869_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|1320081_1320780_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|1321012_1322689_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003723739.1\|1322814_1323732_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1323854_1324088_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_003733804.1\|1324198_1325422_+	GTPase HflX	NA	NA	NA	NA
WP_003723434.1\|1325414_1326641_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1326844_1327213_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1327283_1328618_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1328761_1330057_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|1330100_1330622_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1330651_1331266_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|1331422_1331752_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723440.1\|1331843_1332071_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003723441.1\|1332217_1334212_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|1334432_1334672_+	YneF family protein	NA	NA	NA	NA
WP_003723443.1\|1334722_1335565_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723444.1\|1335583_1336315_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003723445.1\|1336336_1336843_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|1336852_1338157_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_072217143.1\|1338146_1339352_-	helicase SNF2	L0P6E9	Lactobacillus_phage	3.7e-92	47.1
WP_003723448.1\|1339329_1339704_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1339996_1340725_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1340724_1341282_+	ribosome recycling factor	NA	NA	NA	NA
WP_003723451.1\|1341511_1342270_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.1e-22	41.4
WP_003723452.1\|1342283_1343072_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003723453.1\|1343086_1344229_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|1344242_1345505_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_4

1836780 : 1845066

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1836780_1837347_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_003722244.1\|1837343_1838393_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_003722245.1\|1838411_1839839_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003722246.1\|1839823_1842043_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.6e-160	41.4
WP_003722247.1\|1842035_1842719_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1842722_1842968_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003722249.1\|1842979_1843693_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
WP_003722250.1\|1843773_1845066_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_5

2359420 : 2402352

Listeria_phage(89.06%)

terminase,portal,plate,tail,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003727807.1\|2359420_2359654_-	hypothetical protein	A0A059T6E1	Listeria_phage	1.8e-35	94.8
WP_009924649.1\|2359953_2360187_+	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_003722517.1\|2360215_2360587_+	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	5.3e-58	92.7
WP_003722518.1\|2360592_2361042_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_003722519.1\|2361066_2361564_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	2.3e-88	95.8
WP_003722520.1\|2361838_2362612_+	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003734112.1\|2362652_2363498_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.0e-137	89.4
WP_003722522.1\|2363497_2363779_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|2363791_2364157_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003734113.1\|2364185_2364344_-	hypothetical protein	Q9T1A1	Listeria_phage	3.0e-18	98.1
WP_003727798.1\|2364348_2364666_-	hypothetical protein	Q9T1A2	Listeria_phage	1.3e-49	92.4
WP_003734114.1\|2364677_2365751_-\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	2.8e-192	96.6
WP_003734115.1\|2365750_2366779_-	hypothetical protein	Q9T1A4	Listeria_phage	5.6e-190	99.1
WP_003722528.1\|2366779_2367805_-\|tail	phage tail protein	Q9T1A5	Listeria_phage	4.3e-198	98.2
WP_003727794.1\|2367813_2368632_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	6.1e-147	93.0
WP_003734116.1\|2368633_2373997_-	tape measure protein	A8ASK6	Listeria_phage	0.0e+00	93.1
WP_003722531.1\|2374007_2374613_-	bacteriophage Gp15 family protein	Q9T1A8	Listeria_phage	1.3e-109	100.0
WP_003722532.1\|2374617_2375040_-\|tail	phage tail assembly chaperone	A8ASK4	Listeria_phage	9.1e-70	99.3
WP_003733875.1\|2375091_2375424_-	Ig domain-containing protein	A0A059T5E4	Listeria_phage	1.7e-39	95.9
WP_003734117.1\|2375353_2375788_-	hypothetical protein	Q9T1B1	Listeria_phage	1.5e-75	97.2
WP_003727788.1\|2375790_2376198_-	hypothetical protein	Q9T1B2	Listeria_phage	9.0e-67	98.5
WP_003727787.1\|2376197_2376536_-\|capsid	minor capsid protein	Q9T1B3	Listeria_phage	2.2e-58	100.0
WP_003727786.1\|2376535_2376898_-	hypothetical protein	A0A0B5D151	Listeria_phage	8.6e-61	95.8
WP_003727785.1\|2376897_2377293_-	hypothetical protein	A0A059T5E3	Listeria_phage	3.7e-65	97.7
WP_003734118.1\|2377311_2378313_-	hypothetical protein	A0A059T6D4	Listeria_phage	5.0e-183	97.9
WP_003727783.1\|2378312_2378903_-	phage scaffolding protein	Q9T1B8	Listeria_phage	2.6e-75	89.8
WP_003734119.1\|2378993_2380121_-\|capsid	phage minor capsid protein	A0A059T7W2	Listeria_phage	4.3e-199	95.7
WP_003734120.1\|2380121_2381882_-\|portal	phage portal protein	A0A0B5D0F2	Listeria_phage	1.0e-268	94.0
WP_003734121.1\|2381894_2383205_-\|terminase	PBSX family phage terminase large subunit	A0A286QNX6	Streptococcus_phage	6.5e-167	65.6
WP_003722545.1\|2383197_2383953_-\|terminase	terminase small subunit	V5URT8	Oenococcus_phage	2.4e-44	46.1
WP_003734122.1\|2383998_2384538_-	hypothetical protein	NA	NA	NA	NA
WP_003734123.1\|2384797_2385232_-	hypothetical protein	A8AU03	Listeria_phage	9.0e-73	95.1
WP_003734124.1\|2385250_2385415_-	hypothetical protein	A8ASQ0	Listeria_phage	6.7e-21	96.3
WP_003734126.1\|2385544_2385949_-	hypothetical protein	A8AU00	Listeria_phage	1.7e-70	98.5
WP_014601286.1\|2385914_2386055_-	BH0509 family protein	A8ATZ9	Listeria_phage	2.6e-18	100.0
WP_014601287.1\|2386051_2386357_-	hypothetical protein	A8ATZ8	Listeria_phage	1.5e-45	98.0
WP_014931702.1\|2386384_2386762_-	hypothetical protein	NA	NA	NA	NA
WP_014601288.1\|2386783_2387266_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.7e-78	93.1
WP_003733878.1\|2387262_2387442_-	hypothetical protein	A0A076G7F4	Listeria_phage	8.1e-20	87.3
WP_003722556.1\|2387438_2387909_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	2.9e-40	89.7
WP_003722557.1\|2387905_2388349_-	hypothetical protein	A8ASP1	Listeria_phage	2.1e-45	87.1
WP_003722558.1\|2388345_2388543_-	hypothetical protein	A0A0B5CU49	Listeria_phage	2.0e-27	95.4
WP_003734130.1\|2388545_2389142_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	5.8e-54	52.5
WP_014601289.1\|2389153_2390116_-	DNA cytosine methyltransferase	H7BVD3	unidentified_phage	4.5e-48	38.7
WP_003734132.1\|2390133_2390388_-	hypothetical protein	Q8W5X5	Listeria_phage	2.7e-37	97.6
WP_003734133.1\|2390384_2391314_-	hypothetical protein	I1W658	Staphylococcus_phage	8.8e-17	40.5
WP_003727756.1\|2391334_2392144_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A290GJV0	Caldibacillus_phage	2.1e-78	54.3
WP_003727755.1\|2392097_2392979_-	hypothetical protein	A0A2P1JTZ5	Anoxybacillus_phage	1.2e-87	59.0
WP_003727754.1\|2392975_2393179_-	hypothetical protein	NA	NA	NA	NA
WP_003727753.1\|2393396_2393585_-	hypothetical protein	A0A0B5CU43	Listeria_phage	1.0e-28	98.4
WP_003727752.1\|2393693_2393909_-	hypothetical protein	Q9T176	Listeria_phage	1.8e-26	90.1
WP_003727751.1\|2393905_2394439_-	hypothetical protein	A0A059T5F0	Listeria_phage	1.1e-83	93.1
WP_003727750.1\|2394559_2395339_-	phage antirepressor Ant	A0A059T6E7	Listeria_phage	1.1e-142	98.5
WP_003727749.1\|2395402_2395645_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.8e-38	100.0
WP_003727748.1\|2395637_2395799_-	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
WP_003727747.1\|2395830_2396112_-	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
WP_003727746.1\|2396137_2396422_-	hypothetical protein	A0A0B5D168	Listeria_phage	2.9e-40	85.1
WP_003727745.1\|2396433_2396628_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
WP_003727743.1\|2396852_2397119_-	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
WP_003727742.1\|2397122_2397365_-	helix-turn-helix transcriptional regulator	A0A059T7X5	Listeria_phage	1.7e-36	100.0
WP_003727741.1\|2397490_2397796_+	helix-turn-helix transcriptional regulator	A0A059T669	Listeria_phage	6.4e-49	100.0
WP_003727740.1\|2397828_2398320_+	hypothetical protein	A0A059T5E8	Listeria_phage	3.4e-92	100.0
WP_003727739.1\|2398342_2398561_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	5.4e-34	100.0
WP_003727738.1\|2398576_2399299_+	hypothetical protein	A0A059T7P9	Listeria_phage	1.3e-105	100.0
WP_003727737.1\|2399320_2400061_+	hypothetical protein	Q9T192	Listeria_phage	4.5e-133	100.0
WP_003727736.1\|2400124_2401483_+	recombinase family protein	Q8LTD8	Listeria_phage	3.0e-255	98.7
WP_003733969.1\|2401473_2401950_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|2402004_2402352_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_6

2555805 : 2563649

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2555805_2556777_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2556784_2557753_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|2557754_2558630_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003722607.1\|2558737_2560468_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	7.8e-176	54.2
WP_003734087.1\|2560509_2561571_-	galactose mutarotase	NA	NA	NA	NA
WP_003722609.1\|2561587_2562571_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.2e-50	36.9
WP_003722610.1\|2562689_2563649_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_7

2650110 : 2721202

Listeria_phage(87.5%)

terminase,tRNA,protease,integrase,tail,holin

attL 2681942:2681991|attR 2721290:2721339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723609.1\|2650110_2651781_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723610.1\|2651777_2652227_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003723611.1\|2652304_2652958_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003723612.1\|2653031_2653217_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003723613.1\|2653251_2654574_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.6e-30	33.2
WP_003723614.1\|2654588_2655425_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|2655742_2655943_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|2655964_2656288_-	YxeA family protein	NA	NA	NA	NA
WP_003734106.1\|2656442_2658104_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003723619.1\|2658239_2658854_-	SdpI family protein	NA	NA	NA	NA
WP_003723620.1\|2658877_2659510_-	nicotinamidase	NA	NA	NA	NA
WP_003723621.1\|2659510_2660035_-	dihydrofolate reductase	NA	NA	NA	NA
WP_003733266.1\|2660037_2661036_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003723623.1\|2661132_2661405_-	hypothetical protein	NA	NA	NA	NA
WP_003723624.1\|2661453_2662365_-	cation transporter	NA	NA	NA	NA
WP_003723275.1\|2662490_2667083_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003733264.1\|2667303_2668131_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003733263.1\|2668245_2669121_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003723278.1\|2669131_2669425_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003723279.1\|2669457_2669619_-	hypothetical protein	NA	NA	NA	NA
WP_003723280.1\|2669687_2670356_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-38	42.0
WP_003723281.1\|2670355_2671444_-	ABC transporter permease	NA	NA	NA	NA
WP_003723282.1\|2671522_2672902_-	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.6e-57	47.1
WP_003723283.1\|2672898_2673576_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-58	48.4
WP_003723284.1\|2673622_2674408_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003723285.1\|2674469_2674946_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_003723286.1\|2674945_2677933_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003723287.1\|2678430_2679273_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003723288.1\|2679322_2680804_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003723289.1\|2680904_2681792_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
2681942:2681991	attL	NA	NA	NA	NA
WP_003723290.1\|2682415_2682679_+	anti-CRISPR protein AcrIIA4	A0A2D0TCG7	unidentified_phage	1.9e-41	100.0
WP_003723291.1\|2682683_2683133_+	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	1.3e-71	94.6
WP_003723292.1\|2683206_2683806_-	N-acetyltransferase	Q9T197	Listeria_phage	1.0e-111	100.0
WP_003733956.1\|2683792_2683969_-	hypothetical protein	Q9T198	Listeria_phage	6.3e-25	100.0
WP_003723293.1\|2684207_2684915_-	M15 family metallopeptidase	A8ATW4	Listeria_phage	2.0e-130	98.7
WP_003723294.1\|2684914_2685196_-\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
WP_003733957.1\|2685195_2685501_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003723296.1\|2685551_2687714_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	99.7
WP_003734108.1\|2687726_2689295_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	3.1e-304	99.6
WP_003733958.1\|2689291_2694082_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	88.2
WP_003723779.1\|2694086_2694362_-	hypothetical protein	A0A0B5D116	Listeria_phage	5.7e-41	95.6
WP_003723780.1\|2694394_2694826_-	hypothetical protein	A8ATV7	Listeria_phage	9.3e-70	94.4
WP_031670280.1\|2694874_2695114_-	Ig-like domain-containing protein	A8ASK3	Listeria_phage	1.8e-30	89.9
WP_003723782.1\|2695136_2695568_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	8.1e-58	82.9
WP_003723783.1\|2695539_2695944_-	hypothetical protein	A8ATV5	Listeria_phage	2.1e-63	98.4
WP_003723784.1\|2695940_2696258_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	1.7e-49	95.2
WP_003733959.1\|2696247_2696613_-	hypothetical protein	A8ATV3	Listeria_phage	1.6e-62	95.9
WP_003723785.1\|2696612_2696966_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003723786.1\|2696966_2697122_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723787.1\|2697135_2698008_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723788.1\|2698030_2698585_-	hypothetical protein	A8ATU9	Listeria_phage	8.8e-89	98.9
WP_003723789.1\|2698680_2699724_-	hypothetical protein	A0A0B5D111	Listeria_phage	9.1e-196	97.1
WP_003723790.1\|2699728_2701285_-	hypothetical protein	A8ATU7	Listeria_phage	4.5e-300	98.8
WP_003733960.1\|2701299_2702619_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.5e-232	88.3
WP_003723792.1\|2702557_2703343_-	hypothetical protein	A0A0B5CTX0	Listeria_phage	3.0e-127	95.1
WP_003723793.1\|2703382_2703610_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	6.8e-32	94.7
WP_003723794.1\|2704155_2704758_-	hypothetical protein	NA	NA	NA	NA
WP_003723795.1\|2704784_2705222_-	hypothetical protein	A8ASQ1	Listeria_phage	8.5e-71	95.8
WP_003723796.1\|2705387_2705774_-	DUF2481 family protein	A0A0B5CU14	Listeria_phage	5.6e-42	65.4
WP_003733961.1\|2705777_2706182_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	4.5e-58	86.6
WP_003723797.1\|2706126_2706318_-	hypothetical protein	A8ASP6	Listeria_phage	1.8e-25	98.4
WP_003723952.1\|2706336_2706819_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	7.4e-76	91.2
WP_003723953.1\|2706815_2707316_-	hypothetical protein	NA	NA	NA	NA
WP_003723954.1\|2707312_2707714_-	hypothetical protein	A8ATZ6	Listeria_phage	1.1e-43	72.5
WP_003723955.1\|2707710_2707971_-	hypothetical protein	NA	NA	NA	NA
WP_003723956.1\|2707970_2708177_-	hypothetical protein	A0A059T5G1	Listeria_phage	6.0e-27	100.0
WP_003723957.1\|2708173_2708659_-	pentapeptide repeat-containing protein	A0A059T6G6	Listeria_phage	6.6e-48	94.4
WP_003723958.1\|2708655_2708865_-	hypothetical protein	A0A060ALG0	Listeria_phage	3.8e-29	92.8
WP_003723959.1\|2708861_2709269_-	hypothetical protein	A0A0B5CYR4	Listeria_phage	5.2e-30	53.7
WP_003733963.1\|2709265_2709454_-	hypothetical protein	NA	NA	NA	NA
WP_003723960.1\|2709446_2710049_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	4.2e-36	44.7
WP_003723961.1\|2710045_2710255_-	hypothetical protein	A8ASN7	Listeria_phage	2.7e-27	92.8
WP_003723963.1\|2710561_2710759_-	hypothetical protein	NA	NA	NA	NA
WP_003723964.1\|2710762_2711668_-	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	9.1e-144	93.4
WP_003723965.1\|2711705_2712617_-	recombinase RecT	NA	NA	NA	NA
WP_003723967.1\|2712609_2714121_-	hypothetical protein	A0A2I7SC81	Paenibacillus_phage	6.1e-76	36.2
WP_003722564.1\|2714353_2714542_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_003733681.1\|2714644_2714851_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003733682.1\|2714840_2715371_-	hypothetical protein	A0A0B5D173	Listeria_phage	2.7e-79	89.6
WP_003733683.1\|2715494_2716271_-	phage antirepressor Ant	A0A0B5D0I2	Listeria_phage	6.9e-140	97.7
WP_003733684.1\|2716334_2716532_+	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_003722567.1\|2716533_2716815_-	hypothetical protein	A8ATX8	Listeria_phage	1.8e-37	95.7
WP_003733686.1\|2716840_2717125_-	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
WP_003733687.1\|2717136_2717331_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733688.1\|2717351_2717561_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003724014.1\|2717726_2718149_+	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003724015.1\|2718164_2718590_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724016.1\|2718604_2719312_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
WP_003724017.1\|2719370_2719976_+	hypothetical protein	NA	NA	NA	NA
WP_003724018.1\|2720038_2721202_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	4.4e-50	31.2
2721290:2721339	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017545.1|WP_003723290.1|2682415_2682679_+|anti-CRISPR-protein-AcrIIA4

Click the colored protein region to show detailed information

Acr_ID: NC_017545.1|WP_003734124.1|2385250_2385415_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017545.1|WP_003723290.1|2682415_2682679_+|anti-CRISPR-protein-AcrIIA4

2682415_2682679_+

87 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|14	1.0	1	1.0

2650110-2721202

NC_017545.1|WP_003734124.1|2385250_2385415_-|hypothetical-protein

2385250_2385415_-

54 aa aa

2359420-2402352

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017545_3	Unclear	3.9\|569414\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	2364997-2364962	1
NC_017545_3	Unclear	3.25\|570449\|36\|NC_017545\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	2376518-2376553	0
NC_017545_5	TypeII	5.4\|2732333\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	2365027-2365056	0
NC_017545_5	TypeII	5.18\|2733257\|30\|NC_017545\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	2367051-2367080	1

1. spacer 3.9|569414|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_017545 position: 2364997-2364962, mismatch: 1

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtagtacacctcaat	Protospacer
************************.***********

2. spacer 3.25|570449|36|NC_017545|PILER-CR,CRISPRCasFinder,CRT matches to NC_017545 position: 2376518-2376553, mismatch: 0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

3. spacer 5.4|2732333|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_017545 position: 2365027-2365056, mismatch: 0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

4. spacer 5.18|2733257|30|NC_017545|CRISPRCasFinder,CRT,PILER-CR matches to NC_017545 position: 2367051-2367080, mismatch: 1

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information