CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017566	Shewanella putrefaciens 200, complete genome	6 crisprs	RT,cas3,csa3,WYL,DinG,DEDDh,cas6f,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx23,cas5,cas7f,cas3f,cas1,c2c9_V-U4,cas14j,TnsE_C	4	72	15	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017566_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_1

731077-732724

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

27 spacers

The CRISPR arrays of NC_017566_1

>merge|NC_017566|1|731077-732724|CRISPRCasFinder,CRT,PILER-CR
CATCTAAGCTGCCTGTGCGGCAGTGAACATGGTGCTCTCCCGTTTCTTTGCTGCTTGCTATTTCTAAGCTGCCTGTGCGGCAGTGAACATATTTTCAATGCCAGCGTATATAGAATTAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTCTGATTTATATGAAGCCTATGACACAAGACATTTCTAAGCTGCCTGTGCGGCAGTGAACTTCTCCTATGATAGAGCGCTGGGTTTACTCTGTTTCTAAGCTGCCTGTGCGGCAGTGAACAGTTACACGATAAAGACCCGCGAGAATGGCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACCCATAAATCCGAATATATTGCCATCGGTGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACATTTAGAAGCTTTTGAAAATCCCAATCACGAATTTCTAAGCTGCCTGTGCGGCAGTGAACATTTTGCATCAGCTTTCAGATTTAGAAGCAAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGAAGCGCCCATGCGGCATATCCCTAATGACTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGAATCTGGATAAAAGACTTCATCAGTTGAATTTCTAAGCTGCCTGTGCGGCAGTGAACAATCCAGCAAAACCACTTAGTCAGTCACACTTTTTCTAAGCTGCCTGTGCGGCAGTGAACATGCAATCGATCCGGCAGATGATTCCATTTTATTTCTAAGCTGCCTGTGCGGCAGTGAACGAAACACTCCTAAACCAGTTTCCCCCCATCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTCGGCAGCCAAGCGTATTGATGCCATTAGCTTTCTAAGCTGCCTGTGCGGCAGTGAACCGGATCCAAGTGCATCATAAAACGTGATAGCATTTCTAAGCTGCCTGTGCGGCAGTGAACGCCACCGCTGGAGCCTCTGAAGCTGTAATTGCTTTCTAAGCTGCCTGTGCGGCAGTGAACCGTTAATGGCATAGGTCTGTTGACCATATACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTAAGTAAGAACTCAGCGCGGGTGACGATATCATTTCTAAGCTGCCTGTGCGGCAGTGAACTTTCAAAAATAGGGCTAGAATGAACTCAAATATTTCTAAGCTGCCTGTGCGGCAGTGAACCACTGCTTGTTTCTGAAGATTGCGGCGTTCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACCCATTGTCGTTATTAGCATAAAACCTCGAAGATTTCTAAGCTGCCTGTGCGGCAGTGAACAGATAAATTAATTGATTCGGAAAATGGACAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGTAAATTCCAAAGACGGACAGTTTCTATTTTATTTCTAAGCTGCCTGTGCGGCAGTGAACTGACGTCGTGCATAGACACCTCAGATATTCGATTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGTTTTACGTGCAAAACAATTAATAGAAGATTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGTTTTACGTGCAAAACAATTAATAGAAGATTTCTAAGCTGCCTGTGCGGCAGTGAACACTGGTCGAGAGCATCATAGAGATTGGTGTCATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017566|1|1|731077-732724|CRISPRCasFinder
CATCTAAGCTGCCTGTGCGGCAGTGAAC	ATGGTGCTCTCCCGTTTCTTTGCTGCTTGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTTTCAATGCCAGCGTATATAGAATTAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTGATTTATATGAAGCCTATGACACAAGACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTCCTATGATAGAGCGCTGGGTTTACTCTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGTTACACGATAAAGACCCGCGAGAATGGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATAAATCCGAATATATTGCCATCGGTGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTAGAAGCTTTTGAAAATCCCAATCACGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTTGCATCAGCTTTCAGATTTAGAAGCAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAAGCGCCCATGCGGCATATCCCTAATGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAATCTGGATAAAAGACTTCATCAGTTGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCCAGCAAAACCACTTAGTCAGTCACACTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCAATCGATCCGGCAGATGATTCCATTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAACACTCCTAAACCAGTTTCCCCCCATCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCGGCAGCCAAGCGTATTGATGCCATTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGGATCCAAGTGCATCATAAAACGTGATAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCACCGCTGGAGCCTCTGAAGCTGTAATTGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTTAATGGCATAGGTCTGTTGACCATATACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAAGTAAGAACTCAGCGCGGGTGACGATATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTCAAAAATAGGGCTAGAATGAACTCAAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CACTGCTTGTTTCTGAAGATTGCGGCGTTCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATTGTCGTTATTAGCATAAAACCTCGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATAAATTAATTGATTCGGAAAATGGACAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGACGTCGTGCATAGACACCTCAGATATTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGTTTTACGTGCAAAACAATTAATAGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGTTTTACGTGCAAAACAATTAATAGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017566|1|1|731077-732724|CRT
CATCTAAGCTGCCTGTGCGGCAGTGAAC	ATGGTGCTCTCCCGTTTCTTTGCTGCTTGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTTTCAATGCCAGCGTATATAGAATTAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTGATTTATATGAAGCCTATGACACAAGACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTCCTATGATAGAGCGCTGGGTTTACTCTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGTTACACGATAAAGACCCGCGAGAATGGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATAAATCCGAATATATTGCCATCGGTGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTAGAAGCTTTTGAAAATCCCAATCACGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTTGCATCAGCTTTCAGATTTAGAAGCAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAAGCGCCCATGCGGCATATCCCTAATGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAATCTGGATAAAAGACTTCATCAGTTGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCCAGCAAAACCACTTAGTCAGTCACACTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCAATCGATCCGGCAGATGATTCCATTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAACACTCCTAAACCAGTTTCCCCCCATCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCGGCAGCCAAGCGTATTGATGCCATTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGGATCCAAGTGCATCATAAAACGTGATAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCACCGCTGGAGCCTCTGAAGCTGTAATTGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTTAATGGCATAGGTCTGTTGACCATATACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAAGTAAGAACTCAGCGCGGGTGACGATATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTCAAAAATAGGGCTAGAATGAACTCAAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CACTGCTTGTTTCTGAAGATTGCGGCGTTCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATTGTCGTTATTAGCATAAAACCTCGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATAAATTAATTGATTCGGAAAATGGACAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGACGTCGTGCATAGACACCTCAGATATTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGTTTTACGTGCAAAACAATTAATAGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGTTTTACGTGCAAAACAATTAATAGAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017566|1|1|731079-732724|PILER-CR
TCTAAGCTGCCTGTGCGGCAGTGAACAT	GGTGCTCTCCCGTTTCTTTGCTGCTTGCTATT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	ATTTTCAATGCCAGCGTATATAGAATTAGTTT
TCTAAGCTGCCTGTGCGGCAGTGAACTC	TGATTTATATGAAGCCTATGACACAAGACATT
TCTAAGCTGCCTGTGCGGCAGTGAACTT	CTCCTATGATAGAGCGCTGGGTTTACTCTGTT
TCTAAGCTGCCTGTGCGGCAGTGAACAG	TTACACGATAAAGACCCGCGAGAATGGCTTTT
TCTAAGCTGCCTGTGCGGCAGTGAACCC	ATAAATCCGAATATATTGCCATCGGTGCGATT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	TTAGAAGCTTTTGAAAATCCCAATCACGAATT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	TTTGCATCAGCTTTCAGATTTAGAAGCAAATT
TCTAAGCTGCCTGTGCGGCAGTGAACTT	GAAGCGCCCATGCGGCATATCCCTAATGACTT
TCTAAGCTGCCTGTGCGGCAGTGAACAA	GAATCTGGATAAAAGACTTCATCAGTTGAATT
TCTAAGCTGCCTGTGCGGCAGTGAACAA	TCCAGCAAAACCACTTAGTCAGTCACACTTTT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	GCAATCGATCCGGCAGATGATTCCATTTTATT
TCTAAGCTGCCTGTGCGGCAGTGAACGA	AACACTCCTAAACCAGTTTCCCCCCATCTTTT
TCTAAGCTGCCTGTGCGGCAGTGAACTG	TCGGCAGCCAAGCGTATTGATGCCATTAGCTT
TCTAAGCTGCCTGTGCGGCAGTGAACCG	GATCCAAGTGCATCATAAAACGTGATAGCATT
TCTAAGCTGCCTGTGCGGCAGTGAACGC	CACCGCTGGAGCCTCTGAAGCTGTAATTGCTT
TCTAAGCTGCCTGTGCGGCAGTGAACCG	TTAATGGCATAGGTCTGTTGACCATATACTTT
TCTAAGCTGCCTGTGCGGCAGTGAACTA	AGTAAGAACTCAGCGCGGGTGACGATATCATT
TCTAAGCTGCCTGTGCGGCAGTGAACTT	TCAAAAATAGGGCTAGAATGAACTCAAATATT
TCTAAGCTGCCTGTGCGGCAGTGAACCA	CTGCTTGTTTCTGAAGATTGCGGCGTTCTTTT
TCTAAGCTGCCTGTGCGGCAGTGAACCC	ATTGTCGTTATTAGCATAAAACCTCGAAGATT
TCTAAGCTGCCTGTGCGGCAGTGAACAG	ATAAATTAATTGATTCGGAAAATGGACAAATT
TCTAAGCTGCCTGTGCGGCAGTGAACGT	AAATTCCAAAGACGGACAGTTTCTATTTTATT
TCTAAGCTGCCTGTGCGGCAGTGAACTG	ACGTCGTGCATAGACACCTCAGATATTCGATT
TCTAAGCTGCCTGTGCGGCAGTGAACCT	TGTTTTACGTGCAAAACAATTAATAGAAGATT
TCTAAGCTGCCTGTGCGGCAGTGAACCT	TGTTTTACGTGCAAAACAATTAATAGAAGATT
TCTAAGCTGCCTGTGCGGCAGTGAACAC	TGGTCGAGAGCATCATAGAGATTGGTGTCATT
TCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_014609840.1\|716664_718701_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_017566.1\|WP_011790721.1\|725811_726801_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_017566.1\|WP_014609842.1\|721518_724602_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_017566.1\|WP_011790720.1\|726803_728174_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240554
NC_017566.1\|WP_011790710.1\|741432_741720_-\|ribosome-hibernation-promoting-factor	unknown	unknown	gnl\|CDD\|182484
NC_017566.1\|WP_011790712.1\|740135_740990_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_017566.1\|WP_011790716.1\|735566_735800_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_017566.1\|WP_011790726.1\|718872_719703_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_017566.1\|WP_011790711.1\|740986_741430_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	unknown	unknown	gnl\|CDD\|182818
NC_017566.1\|WP_011790715.1\|736438_737125_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|182507
NC_017566.1\|WP_014609844.1\|738296_739661_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_017566.1\|WP_014609843.1\|724605_725685_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_017566.1\|WP_011790717.1\|733863_734721_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224632
NC_017566.1\|WP_014609841.1\|719812_720496_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|236665
NC_017566.1\|WP_011918683.1\|739873_740149_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NC_017566.1\|WP_011790714.1\|737359_738184_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
NC_017566.1\|WP_011790724.1\|720564_721410_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_017566.1\|WP_011790718.1\|732957_733506_-\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NC_017566.1\|WP_011790719.1\|728747_730385_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_017566.1\|WP_006086113.1\|728399_728690_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_014609840.1\|716664_718701_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.76143e-34
NC_017566.1\|WP_011790721.1\|725811_726801_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.02735e-54
NC_017566.1\|WP_014609842.1\|721518_724602_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_017566.1\|WP_011790720.1\|726803_728174_-\|MATE-family-efflux-transporter	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.51551e-129
NC_017566.1\|WP_011790710.1\|741432_741720_-\|ribosome-hibernation-promoting-factor	gnl\|CDD\|182484	PRK10470, PRK10470, ribosome hibernation promoting factor.	1.13465e-33
NC_017566.1\|WP_011790712.1\|740135_740990_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	5.12213e-162
NC_017566.1\|WP_011790716.1\|735566_735800_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000112206
NC_017566.1\|WP_011790726.1\|718872_719703_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.48116e-23
NC_017566.1\|WP_011790711.1\|740986_741430_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	gnl\|CDD\|182818	PRK10896, PRK10896, PTS IIA-like nitrogen regulatory protein PtsN.	7.54197e-61
NC_017566.1\|WP_011790715.1\|736438_737125_+\|OmpA-family-protein	gnl\|CDD\|182507	PRK10510, PRK10510, OmpA family lipoprotein.	2.56889e-83
NC_017566.1\|WP_014609844.1\|738296_739661_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	1.13944e-154
NC_017566.1\|WP_014609843.1\|724605_725685_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.40414e-65
NC_017566.1\|WP_011790717.1\|733863_734721_+\|hypothetical-protein	gnl\|CDD\|224632	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning].	3.09423e-69
NC_017566.1\|WP_014609841.1\|719812_720496_+\|LysE-family-transporter	gnl\|CDD\|236665	PRK10229, PRK10229, threonine efflux system; Provisional.	5.01917e-30
NC_017566.1\|WP_011918683.1\|739873_740149_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.49342e-27
NC_017566.1\|WP_011790714.1\|737359_738184_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.40959e-120
NC_017566.1\|WP_011790724.1\|720564_721410_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00215186
NC_017566.1\|WP_011790718.1\|732957_733506_-\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	4.35157e-31
NC_017566.1\|WP_011790719.1\|728747_730385_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_017566.1\|WP_006086113.1\|728399_728690_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.80279e-44

>NC_017566.1|WP_011790719.1|728747_730385_+|chaperonin-GroEL
MAAKEVVFGNDARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAELEVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNYGYNAGNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQNSAPDMGGMGGMGGMGGMM
>NC_017566.1|WP_006086113.1|728399_728690_+|co-chaperone-GroES
MNIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEILAVGNGRILENGTVKPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAVVG
>NC_017566.1|WP_011790720.1|726803_728174_-|MATE-family-efflux-transporter
MKDRHGLLTAPIGRVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEPLAAISFTFPVTLIISSIAIGIGAGVSTNLGRLIGSGNAPKAKVFLHDALLLTFILTASLSALGSIFITPLFSLLGANESSLPLIRDYMIYWYLAAPLLVVLMVGNQGLRSTGDTRSPAMIMSLAAIINLILDPLLIFGIGPFPRLEIQGAAIATLIAWVVALSLSSYLLIIKRKMLEWAAFDIDRMRANWSKLAHIAQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQNLGAGQPQRAKEALLLSLKFIFIFQTLLYIPLVFLAEPIAHLFSTDPQVLEWLSFYILVLPCAYGPLGIVIIFATALNAYHRPINSLVINLCRLVLLMLPLAALGSYIGGVKGLLLALPVTNILMGIACYWLAQQICEPVKVTTVNANSATH
>NC_017566.1|WP_011790721.1|725811_726801_+|LysR-family-transcriptional-regulator
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFYLRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTVEVISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKTPQEIESHNVSLFRLSNGKIFNELWIGLEEEVRVRGNFCSNSVEVAVEFALQGRGIVYAPTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFIMQELVPNGVPTNMSEMSTRRTCKVSKEAFPHDDLRFRIKESV
>NC_017566.1|WP_014609843.1|724605_725685_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTSYRLLPLAARLPALLSGCSPAESSVQTPAVRPVKLFEVIQLEGGDFRTFPARVAANSRAELSFRISGQLTELALVEGQKVTEGSLLAKLDDRDAYNNLMTREADHELLAADYQRKVELLNRKLISQAEFDSTQAQLKSAKAALAAARDQLSYTRLTAPFSGTIAKRLVDNHQIVQANQGVLTLQNNNLLDVSIHVPEAMAAGLNEYIKQKNFTAKVRFTALEGMEFDAKFKEYSTQVTPGTQAYEVVFSLPQPNNEQLLPGMSAELTLALVKAPNQISAIVPVTAIDKRDQDGQVQVWVYQTQSGEVVPAPVTLGRVTNQGIEILGGLNKGDLIVSAGVSQLSTGMKVKPLRWQRGV
>NC_017566.1|WP_014609842.1|721518_724602_-|efflux-RND-transporter-permease-subunit
MNIAEYSIRHKVISWMFVLLLLIGGGISFTGLGQLEFPEFTIKEALVITAYPGASPEQVEEEVTLPLEDALQQLDAVKHVTSINSAGLSQIQIEIKDSYDKTSLPQVWDEVRRKVNDTAGQLPPGTGTPQVMDDFGDVYGILFNLSGPDYSNRELSNYADYLRRELVLVPGVKKVSVVGSITEQVVIEISQQKLSALGLDQSYIYGLINNQNVVSNAGSLVIGDNRIRIHPTGEFGSIQDLARLIVSPPGSTELIYLGDIANIAKDYNETPTVLYHNKGEAALSLGISFSSGVNVVEVGQRVSERLTELESQRPIGMNLDTVYNQSSAVDDTVNGFLINLLESIAIVIAVLLLFMGLRSGLLMGLILLLTILGTFIVMKVLGIELQLISLGALIIALGMLVDNAIVVTEGILIGLRRGKTRLEAAKQIVSQTQWPLLGATIIAIIAFAPIGLSQNASGEFCRSLFQVLMISLFISWITAITLTPFFCHLLFKDAPSDDEQDPYKGWVFNLYRASLTLALRFRIVSILLVGVLLVSAVIGFGHIKNVFFPASNTPIFFVDIWMPEGTDIKATERFAADIEQQLLKQAEQQHTGLTHLTTVIGQGAQRFILPYQPEKGYPAFAQLIVEMQDLEAVKNYMPELERFLNQRFPQAQYRLKNMENGPSSAAKIEARFYGDDPEVLRALGAQVEAIFYAEPSMDGIRHDWRNQVPLVRPQLENAQARETGISKQDLDNALLVNFSGKQIGLYRETSHLLPIVARAPAEERLQADSLWKLQIWSSEHSTFVPATQVVSNFNTEWENPLVMRRDRMRMLAVLADPKLGSDETADSVLRKVKDKVEAIALPAGYHLEWGGEYETAGEAQTAVFSSIPLGYLAMFLITVFLFNSVRQPLVIWFTVPLALIGVSAGLLLFDAPFSFMALLGLLSLSGMVIKNGIVLVDQINLELSEGKAAYSALLDSCVSRVRPVMMAAITTMLGMIPLISDAFFGSMAITIIFGLGFASVLTLIVLPVMYSLAFNIKPTLIGGQSRN
>NC_017566.1|WP_011790724.1|720564_721410_+|nuclear-transport-factor-2-family-protein
MAQVLWIIQIISKGLVRTLRFKAHILRMILLGSLGVAIHVSVVNAAVTDNSLPQESIPLVQGFIDAAKAHDRQAIADYMAYPIKRTNPIPAINTPEELLKRFDQVFDPEILETIAQSQVEADWQAMGWRGIMLGSGTIWMDFDGKITAVNYQTPAETKLKAELIANQKTGLHESVSQFVSPELAWQTAKFTIRVDNMGNSQYRYASWAKGKPLSEKPDLVLNQGKLVFDGSGGNHSFQFTSGPYLYVCDVIVLGTSDSPIGELVVFKHDRVLLREPAIKAE
>NC_017566.1|WP_014609841.1|719812_720496_+|LysE-family-transporter
MDLSLLLTLALIHAVALVSPGPDFAIMVKIATQQSRSAAVAAAVGISVAIVAHTILSLTGVSLVIKSSHTLYLLVQIIGACYLAWMGWGALRAAFTVLATPKGSQGVNDSGMAGSAVTPVPLGTTMSPKQGFLTGLYTNLLNPKALVFFLTLFSALITPSVTVSTKVAAAMLLLLLSLLWFGFLALMLSKVQVQRKLQRLTPVIDTVIGVIFIAVAFAIVSNLLFSA
>NC_017566.1|WP_011790726.1|718872_719703_+|AraC-family-transcriptional-regulator
MSTTASIENIDYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSYYQLGQHSLSTLNPDDTHDGQSRDAEGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDALLYHYFIHLHELLIQGQVTALASESHLFNFIQLLLRRHPSGILKCNSPQGLSTLQLGLVKQRMHDEPWHNTQLETLAGEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLCHGTLVADVAQQLGFFDQSHLNKAFKQAFLLSPVQFQRRML
>NC_017566.1|WP_014609840.1|716664_718701_+|TonB-dependent-receptor
MKLAVCFLPLLGLSYTVIAEDLADNIERLEIRGRQINTLGHSTSASEGIVGAAEIASRPLLRTGEILEFVPGMIVTQHSGSGKANQYFLRGFNLDHGTDFNTRVEGMPVNMRTHGHGQGYTDLNFLIPELLGEIRYAKGAYYPEVADFSGAGAAQLMLADQLAYNQVGVTLGEYGYQRLVATQALTTDVGRFILGAELQAYDGPWKDINEDVSKVNVVARYLTRLAGGDLSVTMMAYDNSWNSADQIPARAVESGLIDFYGSLDKDVGGDASRYSISAHYDAGNWQGNAYAIRSTMDLFSNFTYFLNDPVNGDEFEQVDERTLWGGDIKRDWHTSLGGTQINYSLGADIRYDDISAVGLYNTQARQRLSTVRLDEVQELSGGLFGKLEWLPLEQWRFNLGLRYDYFDVQVDSDNSLNSGDASDGMLSLKAGASYLWSDNLELYVNAGQGLHSNDARGATIQVDPVSGDEVDKVDLLVRSNGGEFGVKYYDRDFINFSAAVWYLQLDSELVFVGDAGNTEPSRASERYGAEITAYYWLNDDISLDMELAWTHARFTEDEAEEGKYIDGAVPFVGSAGITYRPDGGLYSSIRIRYLGERVLDNFNEHKADDTTLVNLALGYKFDHFDTKLELLNLFDSQDHDIDYFYASRLPGEAAEGIEDQHYHPVEPRMIRVSVSYHF
>NC_017566.1|WP_011790718.1|732957_733506_-|DUF2799-domain-containing-protein
MRYLNLTLALCALSLTHCTSLSLEECSSSDWYTLGLADGNRGATATRLNQYQKDCNEFNLKVDASQWQQGYQQGLINYCLPENGYRVGLEGESYYGVCSDNQFVERYNQGHQQYLVNKRLAEIADRLHTIDSEISSINTKLNNLTDKADLLRQKNILLNEKNHLLDEKARLRQGNIEFKFRF
>NC_017566.1|WP_011790717.1|733863_734721_+|hypothetical-protein
MKTPKRIQPLVDEGLVDEVISQLMSGKEATVYVVRSGDDIRCAKVYKEADKRSFKQAVLYQEGRKVRNSRRARAMEKGSKFGRDQMEEAWQSAEVDALYRLADAGVRVPIPYGCFDGVLLMELVTDAEGNVAPRLNDVTLSAEKAIRDHNLVMTYVKRMLCAGLVHGDLSEFNVLVDSEGPVIIDLPQAVDAAANNHAKWMLARDINNMTQYYGQYAPELLKTQYAKEMWALFEAGDLKPDTQLTGEFTEVLAEADVGSVLEEIQAAYEEAQERKLRIQEANEDY
>NC_017566.1|WP_011790716.1|735566_735800_-|transposase
MGIADNNLKLDVIAEVKVKGRLLSDVAHQYGISAKAVYQWVRESDQQPQQREYALISEIAQLQKRIKQLNNELRTLG
>NC_017566.1|WP_011790715.1|736438_737125_+|OmpA-family-protein
MKRFQVNRFTSSRLAFAAIIGTFVVSGCSTVNPYTNEQQTAKATSGAIIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLASTGVSVTRNGDNIILNMPNEVTFGVDQTELSDGASRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVANYLMSKGIAASRVKSKGMGKASPIASNASAEGRAQNRRVEIVLTPTG
>NC_017566.1|WP_011790714.1|737359_738184_+|molybdate-ABC-transporter-substrate-binding-protein
MMKKNILVALSFCPAMMVSIVQGAPVTAEVAPIELRAAGSLKAAMNDIITAYQAQTKDTVVAQYAPSGLLLKRIQEGERVDLFASANMAHPQALVDAGFGEKVQMFARNQLCAIAQNSVSLTSATLLDTLLDPNIKVGTSTPKADPAGDYAWAVFDKAQTLKPDAKAILEAKALQLTGGPDSAKPPKDRNPYGWVMENKQADIFLTYCTNAVLAKNEVPSLQIIDLPTSLAVGADYGLLILKESNASAAPLAEFILSAKGQAILSRYGFQPPVN
>NC_017566.1|WP_014609844.1|738296_739661_-|magnesium-transporter
MPVEASDSHQVGHRLDQLSKALSSGMFVHVRQMLQNMAASDIALILESSPPKARQVLWQLIDQEQLGAILDELSEELKDPLISTMSPERVAKATASMDTDDLAYILRSLPDTVYKQVLQSMSLQNRQRVEQALSYPDETAGSLMNTDTVTLRPDVNIDVVLRYLRQRGNLPDTTDTLYVVDKQDKVLGGVRLADLLTCDPNTPIRNIMDPDIESIPVGMSDSEVAQLFERHDWVSAPVVDSDNKLLGRITIDDVVDVIREDAEHSMMGMAGMDDDEDTFAPVLKSTFRRSLWLTINLFAALLAASVSSMFEGTIEKFATIAILMTIVPSMGGVAGNQTLVLVIRAIALGHIGQSNARWLIGKELAIGFLNGLLWSILVFVAVSLWKGDTALAGLIAGAMLINMTVAGLAGASIPLILKRLKIDPALAGGMVLTTVTDVTGLFAFLGLATLYLMN
>NC_017566.1|WP_011918683.1|739873_740149_-|HPr-family-phosphocarrier-protein
MPKLERQITICNKLGLHARAATKLVVLASEFDATITLIQGDKQASAASVLGLLMLETGMGKTIKLIAEGPDAELALDAICALIDAKFDEAC
>NC_017566.1|WP_011790712.1|740135_740990_-|RNase-adapter-RapZ
MKLVIVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLIGSLLEQLKGSNDLVAISVDVRNMPEQDKVLVQQLSNLPAGTEITSFFLNSSDKVLLKRYSETRRLHPLSKSRVSLQEAIKLEGKLLEPMSKLVDHYIDTSNLNIYDLSDQVRQILLGSVDKELVIYFESFGFKNGMPTEADFMFDVRFLPNPHWELALRPLTGLDEPVAEFLNRQPLVNKFIWQIENLLETWLPHLERNNRSYLTIAIGCTGGQHRSVYVAEQLAKRFSNGKHKVNVRHRELDHAKA
>NC_017566.1|WP_011790711.1|740986_741430_-|PTS-IIA-like-nitrogen-regulatory-protein-PtsN
MELCTILRPECTTCATPGSKKKVLELISDLAAAQYPTLSSQEIFESLVAREKMGSTGIGNGIAIPHGRLTDITQPIAILVKCEEPIAFDAIDKQPVDILFALLVPADQCQQHLSTLSCMAEKLSDKQILKQLRKTHDETELYQVITG
>NC_017566.1|WP_011790710.1|741432_741720_-|ribosome-hibernation-promoting-factor
MQIKLIGHHIEITESLRAYVEEKFSKLERHFEQIHNVHVVLNVEKMQQIAEARINLTGGEVFATSEHTDMYAAIDVLIDKLDRQVIKHKEKLTKH

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Crispr_ID: NC_017566_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_2

1971280-1972567

TypeIII

I-F:NA

Consensus_repeat	Method
GTTCACCGCCGAATACGCG-------------------------GCTTA------GAAA	PILER-CR
GTTCACCGCCGAATACGCGGCTTAGAAA	CRISPRCasFinder
GTTCACCGCCGAATACGCGGCTTAGAAA	CRT

21 spacers

csx23,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6f

The CRISPR arrays of NC_017566_2

>merge|NC_017566|2|1971280-1972567|PILER-CR,CRISPRCasFinder,CRT
GTTCACCGCCGAATACGCGGCTTAGAAATTGACCAAACCAATGATCGTTAAGTTCCATACGTTCACCGCCGAATACGCGGCTTAGAAATATCAGGTCGGACGACTTAATCGTGTCGTTCAGTTCACCGCCGAATACGCGGCTTAGAAATAAACATTATCTGTTCGCTAACTGGCACGATAGTTCACCGCCGAATACGCGGCTTAGAAAAGCTACGTGAATTAAACCAGATAGCACATTCAGTTCACCGCCGAATACGCGGCTTAGAAATTTGATTTGCTTAATGCTGGTTGCACTTTTGTGTTCACCGCCGAATACGCGGCTTAGAAAGTTGTACCACCAACGGTCAACCACAGGAGAAAGTTCACCGCCGAATACGCGGCTTAGAAAATATTTTAAAAGCAATGCCAGATGGTCGCTTGGTTCACCGCCGAATACGCGGCTTAGAAAAACCCGCGCCAGAAATGGAAGGTTGTACCTAGGTTCACCGCCGAATACGCGGCTTAGAAATCGCTTCATTCTGCGCTCGATGCCAGTGTAAAGTTCACCGCCGAATACGCGGCTTAGAAATGATACATAACCCGCGCCAGCGGTCACTTTAAGTTCACCGCCGAATACGCGGCTTAGAAAGATTAGGTTGGGTCAACTGAGGCTGCGACTTCGTTCACCGCCGAATACGCGGCTTAGAAAGTTACCAGAATTATTAATAGCAGTTGTTATTTGTTCACCGCCGAATACGCGGCTTAGAAAGCCAGTAATTGGCATCAACAATTGAGCATTTTGTTCACCGCCGAATACGCGGCTTAGAAAAACACATCAGTGGGTTGGCCGAACTACGTCAGGTTCACCGCCGAATACGCGGCTTAGAAATTCTTCGGTGCCTTATTTTCTTTAGGAGCCGGGTTCACCGCCGAATACGCGGCTTAGAAAAATGCATCAATCTCTTTATCTGCAATGGCCTTGTTCACCGCCGAATACGCGGCTTAGAAAATTCACGAAAGAAGGAATAGAGCATGTCACAAGTTCACCGCCGAATACGCGGCTTAGAAATTGTTGTCGAAATGGTGAATTCGGTACAAGTCGTTCACCGCCGAATACGCGGCTTAGAAAAGTCAGAATTAAAATAAACGATTTAAATTGGTGTTCACCGCCGAATACGCGGCTTAGAAAGCTAGCAACTAAGAGCGCGCTAACTTTGGTGGGTTCACCGCCGAATACACGGCTTAGAAACACCTCCAGTGAATGTTTTAACAGGTGTCATAGTTCACCGCCGAATACGCGGCAAGTAAG

>NC_017566|2|2|1971280-1972507|PILER-CR
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGACCAAACCAATGATCGTTAAGTTCCATAC
GTTCACCGCCGAATACGCGGCTTAGAAA	TATCAGGTCGGACGACTTAATCGTGTCGTTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TAAACATTATCTGTTCGCTAACTGGCACGATA
GTTCACCGCCGAATACGCGGCTTAGAAA	AGCTACGTGAATTAAACCAGATAGCACATTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTTGATTTGCTTAATGCTGGTTGCACTTTTGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTGTACCACCAACGGTCAACCACAGGAGAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	ATATTTTAAAAGCAATGCCAGATGGTCGCTTG
GTTCACCGCCGAATACGCGGCTTAGAAA	AACCCGCGCCAGAAATGGAAGGTTGTACCTAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TCGCTTCATTCTGCGCTCGATGCCAGTGTAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TGATACATAACCCGCGCCAGCGGTCACTTTAA
GTTCACCGCCGAATACGCGGCTTAGAAA	GATTAGGTTGGGTCAACTGAGGCTGCGACTTC
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTACCAGAATTATTAATAGCAGTTGTTATTT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCCAGTAATTGGCATCAACAATTGAGCATTTT
GTTCACCGCCGAATACGCGGCTTAGAAA	AACACATCAGTGGGTTGGCCGAACTACGTCAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TTCTTCGGTGCCTTATTTTCTTTAGGAGCCGG
GTTCACCGCCGAATACGCGGCTTAGAAA	AATGCATCAATCTCTTTATCTGCAATGGCCTT
GTTCACCGCCGAATACGCGGCTTAGAAA	ATTCACGAAAGAAGGAATAGAGCATGTCACAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGTTGTCGAAATGGTGAATTCGGTACAAGTC
GTTCACCGCCGAATACGCGGCTTAGAAA	AGTCAGAATTAAAATAAACGATTTAAATTGGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCTAGCAACTAAGAGCGCGCTAACTTTGGTGG
GTTCACCGCCGAATACACGGCTTAGAAA

>NC_017566|2|2|1971280-1972567|CRISPRCasFinder
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGACCAAACCAATGATCGTTAAGTTCCATAC
GTTCACCGCCGAATACGCGGCTTAGAAA	TATCAGGTCGGACGACTTAATCGTGTCGTTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TAAACATTATCTGTTCGCTAACTGGCACGATA
GTTCACCGCCGAATACGCGGCTTAGAAA	AGCTACGTGAATTAAACCAGATAGCACATTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTTGATTTGCTTAATGCTGGTTGCACTTTTGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTGTACCACCAACGGTCAACCACAGGAGAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	ATATTTTAAAAGCAATGCCAGATGGTCGCTTG
GTTCACCGCCGAATACGCGGCTTAGAAA	AACCCGCGCCAGAAATGGAAGGTTGTACCTAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TCGCTTCATTCTGCGCTCGATGCCAGTGTAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TGATACATAACCCGCGCCAGCGGTCACTTTAA
GTTCACCGCCGAATACGCGGCTTAGAAA	GATTAGGTTGGGTCAACTGAGGCTGCGACTTC
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTACCAGAATTATTAATAGCAGTTGTTATTT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCCAGTAATTGGCATCAACAATTGAGCATTTT
GTTCACCGCCGAATACGCGGCTTAGAAA	AACACATCAGTGGGTTGGCCGAACTACGTCAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TTCTTCGGTGCCTTATTTTCTTTAGGAGCCGG
GTTCACCGCCGAATACGCGGCTTAGAAA	AATGCATCAATCTCTTTATCTGCAATGGCCTT
GTTCACCGCCGAATACGCGGCTTAGAAA	ATTCACGAAAGAAGGAATAGAGCATGTCACAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGTTGTCGAAATGGTGAATTCGGTACAAGTC
GTTCACCGCCGAATACGCGGCTTAGAAA	AGTCAGAATTAAAATAAACGATTTAAATTGGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCTAGCAACTAAGAGCGCGCTAACTTTGGTGG
GTTCACCGCCGAATACACGGCTTAGAAA	CACCTCCAGTGAATGTTTTAACAGGTGTCATA
GTTCACCGCCGAATACGCGGCAAGTAAG

>NC_017566|2|2|1971280-1972567|CRT
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGACCAAACCAATGATCGTTAAGTTCCATAC
GTTCACCGCCGAATACGCGGCTTAGAAA	TATCAGGTCGGACGACTTAATCGTGTCGTTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TAAACATTATCTGTTCGCTAACTGGCACGATA
GTTCACCGCCGAATACGCGGCTTAGAAA	AGCTACGTGAATTAAACCAGATAGCACATTCA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTTGATTTGCTTAATGCTGGTTGCACTTTTGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTGTACCACCAACGGTCAACCACAGGAGAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	ATATTTTAAAAGCAATGCCAGATGGTCGCTTG
GTTCACCGCCGAATACGCGGCTTAGAAA	AACCCGCGCCAGAAATGGAAGGTTGTACCTAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TCGCTTCATTCTGCGCTCGATGCCAGTGTAAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TGATACATAACCCGCGCCAGCGGTCACTTTAA
GTTCACCGCCGAATACGCGGCTTAGAAA	GATTAGGTTGGGTCAACTGAGGCTGCGACTTC
GTTCACCGCCGAATACGCGGCTTAGAAA	GTTACCAGAATTATTAATAGCAGTTGTTATTT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCCAGTAATTGGCATCAACAATTGAGCATTTT
GTTCACCGCCGAATACGCGGCTTAGAAA	AACACATCAGTGGGTTGGCCGAACTACGTCAG
GTTCACCGCCGAATACGCGGCTTAGAAA	TTCTTCGGTGCCTTATTTTCTTTAGGAGCCGG
GTTCACCGCCGAATACGCGGCTTAGAAA	AATGCATCAATCTCTTTATCTGCAATGGCCTT
GTTCACCGCCGAATACGCGGCTTAGAAA	ATTCACGAAAGAAGGAATAGAGCATGTCACAA
GTTCACCGCCGAATACGCGGCTTAGAAA	TTGTTGTCGAAATGGTGAATTCGGTACAAGTC
GTTCACCGCCGAATACGCGGCTTAGAAA	AGTCAGAATTAAAATAAACGATTTAAATTGGT
GTTCACCGCCGAATACGCGGCTTAGAAA	GCTAGCAACTAAGAGCGCGCTAACTTTGGTGG
GTTCACCGCCGAATACACGGCTTAGAAA	CACCTCCAGTGAATGTTTTAACAGGTGTCATA
GTTCACCGCCGAATACGCGGCAAGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_041412329.1\|1961799_1962558_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_017566.1\|WP_041411941.1\|1982266_1984225_+\|propionyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|341271
NC_017566.1\|WP_014610414.1\|1973847_1974552_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NC_017566.1\|WP_014610417.1\|1977642_1978488_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NC_017566.1\|WP_011789594.1\|1981582_1981987_-\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133403
NC_017566.1\|WP_014610415.1\|1974640_1975573_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NC_017566.1\|WP_014610419.1\|1980260_1981430_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NC_017566.1\|WP_014610413.1\|1973062_1973719_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NC_017566.1\|WP_014610406.1\|1963889_1965125_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_017566.1\|WP_041412330.1\|1972642_1972963_+\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610407.1\|1965124_1966966_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_017566.1\|WP_014610410.1\|1968998_1969427_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|187880
NC_017566.1\|WP_014610404.1\|1962731_1963046_-\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610409.1\|1968131_1968995_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_017566.1\|WP_014610408.1\|1966968_1968108_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_017566.1\|WP_041412331.1\|1975573_1977628_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NC_017566.1\|WP_014610411.1\|1969426_1970560_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NC_017566.1\|WP_014610418.1\|1978549_1980157_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NC_017566.1\|WP_014610405.1\|1963306_1963864_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NC_017566.1\|WP_014610412.1\|1970559_1971024_+\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_041412329.1\|1961799_1962558_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.42391e-17
NC_017566.1\|WP_041411941.1\|1982266_1984225_+\|propionyl-CoA-synthetase	gnl\|CDD\|341271	cd05967, PrpE, Propionyl-CoA synthetase (PrpE). EC 6.2.1.17: propanoate:CoA ligase (AMP-forming) or propionate#CoA ligase (PrpE) catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of Salmonella enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency.	0
NC_017566.1\|WP_014610414.1\|1973847_1974552_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	1.73093e-108
NC_017566.1\|WP_014610417.1\|1977642_1978488_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	9.85275e-94
NC_017566.1\|WP_011789594.1\|1981582_1981987_-\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133403	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.84881e-58
NC_017566.1\|WP_014610405.1\|1963306_1963864_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.15667e-90
NC_017566.1\|WP_014610419.1\|1980260_1981430_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NC_017566.1\|WP_014610413.1\|1973062_1973719_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	2.60639e-119
NC_017566.1\|WP_014610406.1\|1963889_1965125_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.5159e-37
NC_017566.1\|WP_014610407.1\|1965124_1966966_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.26563e-45
NC_017566.1\|WP_014610410.1\|1968998_1969427_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	1.15981e-41
NC_017566.1\|WP_014610411.1\|1969426_1970560_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.13968e-36
NC_017566.1\|WP_014610409.1\|1968131_1968995_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	3.10127e-68
NC_017566.1\|WP_014610408.1\|1966968_1968108_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.18335e-102
NC_017566.1\|WP_014610418.1\|1978549_1980157_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_017566.1\|WP_014610415.1\|1974640_1975573_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	7.81497e-173
NC_017566.1\|WP_041412331.1\|1975573_1977628_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0

>NC_017566.1|WP_014610412.1|1970559_1971024_+|hypothetical-protein
MNTLKRIWFFLLVMFVVPLLIIIGIGFCTQQPEGFIYPILTSIATSLIAAGVVYWFIDNRLNDLIETDDEITVVLESPSGKKIECPPMRRKDFSRSEVQGYIGMLGGAQRFDIASLKTPAFGENLLKTSKSKGSQSFIVDCTDAEMKQFDIGSK
>NC_017566.1|WP_014610411.1|1969426_1970560_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MTVLVRNKIQSAFCQTDSVNPSLLLQKGMLDANKEKNSDGKLDNKKTGHLEKIVKLPATQEYKNAFNRWFDLTNDASRFKQSAMMLENRLLIGLTGQGALETGCSLNRNYGMPYIPGSSVKGIARAWANQHLAGHSDELEQLFGTADNEQLHRVSGLVTFHDAWWVPDPKKKEHKPFVLDVVTTHHQAYYNGKQQQPSDKDSPIPNHLLAVQGSFLFVIEGEPAAIELCQTLLEKALVDNGIGAKTTAGYGYMKVDLALMQRLLDESEKRLPQEVREQRQAEALRRKEQKREDAAKAELEMPPSHVISVINEKYQAQRDNQNFRDKVEAWIDRAIEAWNIDNRKSLASCLKEAGYIPGKKKKNYQISKDRLQQLKGE
>NC_017566.1|WP_014610410.1|1968998_1969427_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MQPRSQIVATAAYQRIKARKLENSDKDNKNYATLVHKLPSMILQNGLAQTTGFFLAKNEDHHQALLEDLTQVFKQVDAKLANIANGEALHGEIIQSDLHQIMRMTREALEIAGWLRRYVQGVLKIDATGEVNDDHHNPAEAK
>NC_017566.1|WP_014610409.1|1968131_1968995_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSFHVYHLFSQTILHCGSGQSVGIVDQPIARERASYLPIVPGSTVRGVLKAHISLKESDLSQSLFGYDKQDGEPSFAGALSITDAHLLLLPVRTVYGILAYATCPFILQRYKKDQKLDVKIPTPANDQALYPKGNPNHQDNLMVLEDLDLKAQECEYTQQWAENIAQTLYAKDRPDYSDMSKRIIVLPDTVFSFLAETATEIRTRIRINQETGVVDNGALWTEESLPAESVLWGVFSVDEPRLNDKNGDKRPRFNDIINNKPVLQMGGNMGTGNGLVQFIAQSAKGE
>NC_017566.1|WP_014610408.1|1966968_1968108_+|CRISPR-associated-protein-Cmr3
MLYYLIEPKDPLIIRSGRPFEEISDAQAARFPPPSTVAGALRNIHARSNGKPLNNELLKLAVTGPLAVKRPINGDAPSEKHILVPKPADVQYCYDQQTQLTHLVRSKPMAFAEGEGCDLPSGLLPLFAENVHGGKPVLGPNWWSFNDLVAWRKGEAVSFERICQNGWMPAEPDIRTHIAINNHSRNVESGKLFQTTGLSMWQQRADHQTFPEASLSILAGIDGDITLPLLNLGGERRLAAVEACTLWPSLPSDLVPSIIESKGFTLTFLTPALFSNGWLPTWLNDDLVGTPPCCQSLTVKLRATALERWIPQSGWDLVNNTPRAAQKMIPAGATYWFEIVGDATDEDIRSLWLAHFCDDPQSNLNGFGLALPAAYQFTI
>NC_017566.1|WP_014610407.1|1965124_1966966_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MDYLVAISIGPVQSLIEAGRRAQDLWCGSWLLSEVARAVALKLHQTQNGCLIFPNPEHPEVELLPQSSDEPKANIANVIRAVISADSKEELQNKLENAKGAAFDRLVGIFTEVLTKNELQNAGIDRARWQQQQNDVLEIFSAWVSLDNHQYNDNAASIRLGQLLHARKLSRNFEPMKDNMAALHKSTLDGANNTVTNKLTARNAAKELKISDQQVLQKRRFLGLTNEEELDALGVVKRRAGNLEQFTPFSRIVAHGWLNSLSDEQRAGLKVAYQPLLASGHITKVEGNDGIYADFPFDGEYLFLSRLAQADIEHDLKDKLQKQLAAIKSSPVPYGVLLKADGDRMGELLAQAKTYDDSKAISKALHKFAISVRKTLQDHGGHAIYAGGDDVLAFVPLAQSMTCAKQLADDFKENMKVIAAELKLSEAFYPTLSVGLAIGHFVQPMRQLRHRAIAAEKHAKGNKEQKPRNALAIHLGIRSGHEITWRCRWDDETLNALTDFTDAFTRGWMPTRIMQEVREMAVHLKWTAWQEELAGIRESELERMLARAEFNVSVEESGKTPEQIKESEKAALEKLKSQLRTQASHYSLDELANLLILARWLSAKTTADIGGEE
>NC_017566.1|WP_014610406.1|1963889_1965125_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MRRQIKGELLDGLRDELKKEPSKNEWITYHCTLVTPMYGGGVEAGKVDTAMPIRASAIRGQLRFWWRIACGPKDPKVMRENEEAIWGGIGDKAAIASQVQIRVISKNVIMSNLVSSKKLAGSGVKYGLGAADEAYCLPSGYNFVLEIRYKDYITSDQIKQVKESLRWWALFGGVGARTRRGFGAVEVKGVEPIPIHDFDDEQTNKGCKLAFAKGQYNDAKLAWEKATNSLYEFRQQPEIGRNKGKEKKEGRSFWPEADQLRYLTGKNDNGRHMPEFEKNLIFPRAAFGLPIQFQFPGKNNDPDKMNLYPEDSERLASPLILRPYLDENKKWRALALLLPNWKKALTQPLTLEPTSEKKSSNSRKVTYPVNHWPDEDQQLERDRLTNDIKPMKGRANDPLSAFLEYFKEGNS
>NC_017566.1|WP_014610405.1|1963306_1963864_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIKLMEDPEFSAPILMNALFSKLHRALVDVSQGDIGISFPAMSSKCLGQHLRIHGSRAALERLEQLTWRKGLSDYAQVSDILVVPNTSQHCLVSRVHAQSNLESLRRRAMKRRSISYEEACLQIPEDLSKQLDFPFVQIKSQSTHQLFRLFIKQSLSPPLQAESAFSKYGLSNTATVPWF
>NC_017566.1|WP_014610404.1|1962731_1963046_-|hypothetical-protein
MTTLKDLLNHLKTEHQITSAAELAALLAQDEALVQQIKQADAQYWVNFNKQTFDGWYCVATPSNASYHVYYQERGQNCWGEEVFSDQHLAIATVIFDSGLFHSE
>NC_017566.1|WP_041412329.1|1961799_1962558_-|sulfite-exporter-TauE/SafE-family-protein
MDWLLIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKDLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLASAAFIIGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVIVGLAMALGFFIR
>NC_017566.1|WP_041412330.1|1972642_1972963_+|hypothetical-protein
MRRTSQANSTDALATIGKRDFFVEPPRMGLRRVARAEGLFMAISIQKVHSAKHSVEQACSPKTRFVVDNLAVNLLMIPRLRGDDKSNKKPKINKKPRIIFWALLVS
>NC_017566.1|WP_014610413.1|1973062_1973719_-|CoA-transferase-subunit-B
MALSREQLAQRVAKELQDGYYVNLGIGIPTLVANYIPEGMEVMLQSENGLLGMGEFPTEDTIDPDLINAGKQTVTAVKGASFFSSAESFAMIRGGHVDLTVLGAFEVDVNGSIASWMIPGKLIKGMGGAMDLVAGAENIIVTMMHADKYGNSKLLPVCELPLTGYGCIKRVVTDLAFIEIKDGAFHLLERAPGVSVEEIVSKTAGKLIVPDHVPEMVF
>NC_017566.1|WP_014610414.1|1973847_1974552_-|CoA-transferase-subunit-A
MAGLNKVVSSYEEALTGLSDDMTIMVGGFGLCGIPEGLINQMVKMGVKGLTAISNNAGVDDFGLGLLLKHRQISTMIASYVGENATFEQQMLSGELNVILTPQGTLAEKIRAGGAGIPAFFTATGYGTPVAEGKETREIKGRHYVLEESLTADFALVRAWKADTMGNLVFRKTAANFNPMMATAGKITVVEAEFIVEPGELDPDHIHTPGIYVDRVIQGTFEKRIEQRTVKAAK
>NC_017566.1|WP_014610415.1|1974640_1975573_-|hydroxymethylglutaryl-CoA-lyase
MSALDLANLSATSDKVNLFEMGPRDGLQNEAAVPTEAKVALIEALADAGVKRIESGSFVSPKWVPQMADSGDVLRQIRRQAGVVYSALTPNVKGLELALDAKASEVAIFGAASQSFSQRNINCSIEESIERFIPLMDMAKAANIPVRGYVSCVLGCPYEGEIAASEVARVSEILYKMGCYEISLGDTIGVGTPLKARKMLQAVMERVPVEKLALHFHDTYGQALANITACLDLGVRSFDASVAGLGGCPYAKGASGNLASEDLVYMLHGLGLNTGIDLEKLALAGFGISKQLNRLNGSKVANAILQGAKA
>NC_017566.1|WP_041412331.1|1975573_1977628_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MLTNSMFTKLLIANRGEIACRIIKTAQAMGVRTVALYSDADKNARHVAMADESFYLGGSAPADSYLKGDLIIEIAKKAQAQAIHPGYGFLSENADFARKCEAAGIVFVGPGSEAIEAMGSKSAAKTIMTAAQVPLVPGYHGDDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDKLLLERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGEAAVAAAKAIDYVGAGTVEFLLDTDNSFYFMEMNTRLQVEHPVTEMVTGQDLVKWQLMVASGQPLPLKQDEVRIHGHSFEVRIYAEDPQNEFLPASGKLNFLREPEQSKYVRIDSGIRENDVISNFYDPMIAKLIVWDESRPRALQRLVHALESYQISGLKHNIEFLANIAEHPAFAKADFSTDFINRYGDALIGSASSEADTALAFAALYQVLARKEAAKAQAINSADPYSPWGQVSGFRLNSVSQHTIALLDDAHELQQLVLLDFGDHYLLSQPQLSQPTDAGQVSKSLSGELKQDLLLAEINGHKSKVPVSAQGDDFTLFLPSGSYHFRAVKTQVVEAQSSNEDKLKAPMNGTVVTHLVEVGAEVKAGQGLLVMEAMKMEYTIEAPFDGIVTEFYFKAGELVSDGAVLLHVEPKAQSEEA
>NC_017566.1|WP_014610417.1|1977642_1978488_-|gamma-carboxygeranoyl-CoA-hydratase
MTDTQHQNTSTQSLGRLQHVSYALNNGVGELILNRAEVHNAFDEVMISEMIAVLGYFAEHKDCKLLVLKANGKNFSAGADLNWMRKQAKMDFEQNLNDAKALAKLMQDLDTFPKPTIALVQGAAFGGALGLICASDIAIATERASFCLSEVKLGLIPAVISPYVARAMGNRASRRYMLTAERFDAQTALKLNIIHEINDDLAAAAQPIITALLANSPQGMAWVKTLLARLEDGVIDQDTIDYTSERIARIRVSDEGQEGLNAFFEKRQPNWHTPTDTQGAL
>NC_017566.1|WP_014610418.1|1978549_1980157_-|methylcrotonoyl-CoA-carboxylase
MTQLSSRINARSDEFKAKSDDMAALVADLKTKLAKIELGGGPVALERHLSRGKLLPRQRVEKLLDAGSPFLELSQFAAFEVYDEEVPAAGIIAGIGRVSGVECMIIANDATVKGGTYYPITVKKHLRAQDIASRCHLPCIYLVDSGGANLPRQDEVFPDRDHFGRIFYNQAQMSAKGIPQIAVVMGLCTAGGAYVPAMADESIIVKDQGTIFLAGPPLVKAATGEEVSAEELGGAEVHTKISGVADHLAQNDEHALELARRAVLRLNHQKQINSLLSPVKPPKFDINELYGIVGTDLKKPFDVKEVIARIVDDSDFDEFKANYGTTLVCGFARIHGYPVGIVANNGILFSESAQKGAHFIELCCQRKIPLLFLQNITGFMVGKKYEHEGIAKHGAKMVTAVSCANVPKFTVIIGGSYGAGNYGMCGRAFEPTMMWMWPNARISVMGGEQAAGVLATVRRDGLARKGEAWSVEDEKAFKAPIIAQYDKEGHPYHASARLWDDGIIDPAQTRDVVGLALSAALNAPIEDTRFGVFRM
>NC_017566.1|WP_014610419.1|1980260_1981430_-|isovaleryl-CoA-dehydrogenase
MNSLYTSLNFGLGEDVDMLRDAVQDFAANEIAPIAAKVDHDNAFPNELWPVLGGMGLLGVTVPEEFGGANMGYLAHVVAMEEISRASASIGLSYGAHSNLCVNQINRNGNAAQKAKYLPKLVSGEHIGALAMSEPNAGSDVVSMKLHARKEGDRYILNGNKMWITNGPDANTYVIYAKTDLTKGAHGITAFIVERGFKGFSQAQKLDKLGMRGSNTCELVFEDVEVPEENILGGLNNGVKVLMSGLDYERVVLSGGPLGIMNACMDIVVPYIHEREQFGKSIGEFQLVQGKLADMYTGMNAAKAYVYSVAKSCDRGETTRKDAAGAILYSAELATKMALDAIQLLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMLIGREIFNESK
>NC_017566.1|WP_011789594.1|1981582_1981987_-|MerR-family-DNA-binding-transcriptional-regulator
MSATHTVQTTYSISDLSKEFDITTRSIRFYEDQGLLKPKRRGQTRIYSLKDRVRLKLILRGKRLGFSLAETRRLFELYDADKSSTTQLNTMLALVEEKKSALQQQMDDIKVVLMELNSAEQQCRLALEESKTKA
>NC_017566.1|WP_041411941.1|1982266_1984225_+|propionyl-CoA-synthetase
MLTEQQNASVAQAANQKQNQQKHQALHQASLLNKAEFWGEAAKTLDWIKPAQTVLDESQAPFYHWFADGEMNTCYNAVDRHVLAGRGDQVAIQYVSPVTDTEYGISYGELQAQVSRLAGFMQSIGIRKGDRVVIYMPMVPETAFAMLACARIGAIHSVVFGGFAANELATRINDAKPKLVLSASCGIEPSGVIPYKPLLDKALAQSVHQVDHCLILNRSQYQADLLEGRDLDWQAALATAPKADCVALKATDPLYVLYTSGTTGQPKGVVRDNGGHAVALAWSMQHIYDIQTGDVFWAASDVGWVVGHSYIVYGPLLVGATTLMYEGKPVGTPDPGAFWRTIAKYKVKRFFTAPTAIRAIKREDPDGEYLQGVDLTCLKNVFLAGERCDPDTLVWAHTKLAKPVIDHWWQTETGWPVAANLMGTAPITIKPGSPALPVPGYAVEVLDELGEQVAPNTSGNVVIKLPLPPGTLTTLWQNDQRYQDSYLSMYPGYYLTGDAGYTDEDGYLYIMSRIDDIINVAGHRLSTGRFEEVLCQHPDVAEAAVIGVDDALKGQVPLGLVVLKKGVTISDEELHKQLITLVRQEIGPVASFRLVSAIQKLPKTRSGKILRGTMRKIADNQQYTAPATIEDPLTLELVRTALTRMGYADALV

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Crispr_ID: NC_017566_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_3

2382409-2382513

Orphan

Consensus_repeat	Method
TACCAACTGAGCTAATGTCGCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017566_3

>merge|NC_017566|3|2382409-2382513|CRISPRCasFinder
TACCAACTGAGCTAATGTCGCCTTTTGTATCGCTGCTATATTTGCCTTCAACATTGATAAAGGTATCGTCTGTTAACCTTTATCAACTGAGCTAATGTCGCCTTT

>NC_017566|3|3|2382409-2382513|CRISPRCasFinder
TACCAACTGAGCTAATGTCGCCTTT	TGTATCGCTGCTATATTTGCCTTCAACATTGATAAAGGTATCGTCTGTTAACCTT
TATCAACTGAGCTAATGTCGCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_014610634.1\|2393283_2393763_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NC_017566.1\|WP_014610630.1\|2386777_2387860_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_017566.1\|WP_014610631.1\|2387992_2389621_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NC_017566.1\|WP_014610633.1\|2391952_2392987_-\|succinylglutamate-desuccinylase	unknown	unknown	gnl\|CDD\|235408
NC_017566.1\|WP_011789406.1\|2366201_2366360_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|369084
NC_017566.1\|WP_011789409.1\|2371398_2372430_-\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|366471
NC_017566.1\|WP_041411982.1\|2366883_2370765_-\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|273900
NC_017566.1\|WP_014610625.1\|2379046_2379481_+\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_011789416.1\|2382877_2384311_-\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NC_017566.1\|WP_006081586.1\|2390611_2391790_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
NC_017566.1\|WP_011789412.1\|2378457_2378745_-\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
NC_017566.1\|WP_014610628.1\|2384514_2385402_+\|DUF2989-domain-containing-protein	unknown	unknown	gnl\|CDD\|371419
NC_017566.1\|WP_025007639.1\|2372550_2374404_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_017566.1\|WP_011789414.1\|2379431_2379980_-\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|283577
NC_017566.1\|WP_014610632.1\|2389630_2390608_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|185502
NC_017566.1\|WP_014610635.1\|2393846_2395499_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100094
NC_017566.1\|WP_011789408.1\|2370859_2371276_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NC_017566.1\|WP_014610629.1\|2385608_2386619_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_017566.1\|WP_014610624.1\|2374400_2378318_+\|DUF490-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NC_017566.1\|WP_014610627.1\|2380103_2381558_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_014610634.1\|2393283_2393763_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	2.90596e-87
NC_017566.1\|WP_014610630.1\|2386777_2387860_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_017566.1\|WP_014610631.1\|2387992_2389621_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NC_017566.1\|WP_014610633.1\|2391952_2392987_-\|succinylglutamate-desuccinylase	gnl\|CDD\|235408	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional.	0
NC_017566.1\|WP_011789406.1\|2366201_2366360_-\|nitrate-reductase	gnl\|CDD\|369084	pfam06796, NapE, Periplasmic nitrate reductase protein NapE. This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides f. sp. denitrificans IL106. NapE is thought to be a transmembrane protein.	1.10646e-15
NC_017566.1\|WP_011789409.1\|2371398_2372430_-\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|366471	pfam01112, Asparaginase_2, Asparaginase.	2.4327e-150
NC_017566.1\|WP_041411982.1\|2366883_2370765_-\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|273900	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. The HrpA/B homolog from Borrelia is 500 amino acids shorter but appears to be derived from HrpA rather than HrpB. [Unknown function, Enzymes of unknown specificity].	0
NC_017566.1\|WP_011789416.1\|2382877_2384311_-\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NC_017566.1\|WP_006081586.1\|2390611_2391790_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	6.83794e-146
NC_017566.1\|WP_011789412.1\|2378457_2378745_-\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	7.61785e-52
NC_017566.1\|WP_014610628.1\|2384514_2385402_+\|DUF2989-domain-containing-protein	gnl\|CDD\|371419	pfam11207, DUF2989, Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.	3.41575e-86
NC_017566.1\|WP_025007639.1\|2372550_2374404_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	2.25265e-103
NC_017566.1\|WP_011789414.1\|2379431_2379980_-\|DUF882-domain-containing-protein	gnl\|CDD\|283577	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.	3.19252e-83
NC_017566.1\|WP_014610632.1\|2389630_2390608_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|185502	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional.	0
NC_017566.1\|WP_014610635.1\|2393846_2395499_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100094	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_017566.1\|WP_011789408.1\|2370859_2371276_-\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.60953e-59
NC_017566.1\|WP_014610629.1\|2385608_2386619_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.47162e-172
NC_017566.1\|WP_014610624.1\|2374400_2378318_+\|DUF490-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	2.00832e-131
NC_017566.1\|WP_014610627.1\|2380103_2381558_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	4.84131e-95

>NC_017566.1|WP_014610627.1|2380103_2381558_-|L,D-transpeptidase-family-protein
MEHAKLPWLSKHGRLFKIVVCSLLFLGMFVSNTLRATSPFDSRINDNSFQQYPFLLEQTLLFDLAGVNPLFNTNYQALSQAKTEPLQPDDMVRMQGQVTAYWQHISALSGCDAVMTNNTNADPMSDIHYQAVLKKISQLIQLESQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELRQRIFSRKLTPRYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQDREFDVYDYSGQLIFHTPEEWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGTSEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDRLAPNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLEAEFTNAVTSSIFNIP
>NC_017566.1|WP_011789414.1|2379431_2379980_-|DUF882-domain-containing-protein
MTLICPARRQLLLGLGGVALYSLLPSKAAASRSTKGIRELSLYNRHTGERNDGSYWVDGHYQSEVLADFSQLLRDHRQNIAAPMDKRLFDLLYSLKTTLNVDDEIHVISGYRSPKTNGMLANNSGGVAKKSYHMQGMAMDIAIPSVNLKTLRDAALSLKLGGVGYYPKSGFVHVDCGPVRRW
>NC_017566.1|WP_014610625.1|2379046_2379481_+|hypothetical-protein
MRHALYLLQQENRLSCQLARELVSLIETVPYQQTTLELKLLELLACTQQKNHSLIQLMQTRGSTEVESQRQRQFQFSQRLSQLISDWQQHREMNKLDQQFMPLLRYYLCESQSLEHAFYDKIIQQISQATNASPDHSQRAQNQT
>NC_017566.1|WP_011789412.1|2378457_2378745_-|50S-ribosomal-protein-L25
MSYTIQAQTRTEIGKGSSRRLRHAGKVPAVIYGQGKEPVSIVFEHKDIINIQANEDFYTSVVTIVLDGKEVGVRAQAMQRHVFKPIIEHVDFVYA
>NC_017566.1|WP_014610624.1|2374400_2378318_+|DUF490-domain-containing-protein
MSHSKVNDKTNEQVDVASIDSTGSAQSVPVSGLQRIWRAFKLVTRIIVYVPLTVLVLIALLIGTEMGSRLSIGLANQFVPDLELTYTSGAINKELNLAHAVWAMDGIKVQLEALHLAWQPTCLLQKQLCITALTAAKVEVQIDTEQLVSDPADASSEIAGIDDAESQLTLPFGIILDTAQLMAVNVQLDGMHFAANSIETKATWLTKGLTIKQLSSEGLSILIPLDDSSNTTTNTAASNASPNASIDSVEWALAQLPPVFMPFPVMVEQLNLENTTLEIGDRKDVFRHAALQGSFQQYQLTLTHLLLEHTYGQAEVAGTLNLENDYPLSLDINVTLHQVAELPELSGQELTLKLRDSLGQLRINAHAKGDAEFILDGQIELKNPTLPYKAKLEQARLQWPLQSAEYFVSNLSIDTQGSLNKQNAKIQGQLITPFNKVLSIDTVLQHQDSKLTIDKLNASGDIGTVALEGELNYQKAISWKATVQLDAIQLEELTLPQTESADAIHLPNSLISGKLHTTGKLDNNRWQVALTETTFEGTLQGYPFDIKGDISLNDALYVSSKGLNANALGASLALKGEANANWDLQGELQVPDLGLWLPKASGQLQANIHVAGDAKHPQLEVTAQLVDLLYQNIKLQESTLKAYYKPLEQHEFAVSLKSKALHLGEQVLDTITLGSKGDINTQKLTLNVSGDLGLDLSLASQFDEKKSRLQAQINRLNLLTPLGLWQLDKDVSIGWDQNKSQGNITPFCLVNPNSRLCLNNQTVLGQTGDAQISYSGNPGKLLAPILPGNMNWDGNAALFANFAWVKGRKPTADLTLNFAPGSILLKRAKNREVTINYQQLALNTTLDAKRLVSSLSFESEGVASWQSEITVNVTPDRTLSGYATIKEINLQPLGEFFPQLNTIEGQLTSKLNFAGTLQDPEVSGNMSLTEGALALTANPTLINKIDMSMNLGGQQAELKGRWMMGNGLGRVSGNLRWPQGLFSGELAIEGDKLAVIQPPLAILDISPDLTLSFSSEQLEVKGTVNIPSGNIKIVQLAEGGVALSEDVVFNDSIAAAQPKSSPYAIVADLNINVGNDLRVDGMGLKGKLQGTLKLQQQAFRPPLLFGDIKVRQGSYKFMGQTLNIRTGEVQFVGPTSVPNLNIEAIREIKSEDLIAGVRVTGTPARPVVTLFSNPAKEQAEILSYIIKGSGFNSTNNEQNNSLMMGAALGLSSQVGGGAINNIGNTATGLIEEFGFSNVQLDTNDEGRVAISGYIGEKLMVKYGVGVFNPGYEMTVRYYLLSQLYLETVSGTLGQSLDIYYNFNIK
>NC_017566.1|WP_025007639.1|2372550_2374404_+|outer-membrane-protein-assembly-factor
MQRFLQITSLSFRLYLLVGLSLVASVATADNFLKLSVSGVDEALQRNILAHLGSLPDSDVQRRAFLFNVEDNVTTALESMGYYHGKIEEKLIENEKGPWELKLTVSAGEPTKIQWVDINFSGEMLNDRAFDQWLSQVNIKPGDTLNHGHYSELKSQLVALALARGYFDGEFTQSQIKINRDINTAQISLHFNSGQRYRFGQVSFDGHTLEPDILTNLIPFKENASYSTRRVSSLNRQLLDTGYFANIKVIPQIDLVEDNHIPVKVELTPKASHSIELGLGGDIGQSADNTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLTTYTIPLTHPLDDQLKIRLGLLRDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLDNQWLMSYSLDAIREEYNQSDTDYFPTFYLAGINFSKTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRVVARIDLAANIANENELAFIPPSLRYFAGGDQTVRGYGYQELGPYLDYIDTDGSTNREVIGGRYLMVGSLEYQYYLTPTWRLGTFIDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGIGLKETDTIERSWRIHLTMGTEL
>NC_017566.1|WP_011789409.1|2371398_2372430_-|isoaspartyl-peptidase/L-asparaginase
MKIKLATFSLIISSVLFMSHNTNANDKPFAIAIHGGAGTISKANLTPEQRQAYKDKLKEAVDKGSKVLEQGGDSLLAVQTAINVLENSPLFNAGVGSVYTFDGGHELDASIMDGKTMNAGAVAGVRHIANPIDLALAVMNKSEHVMLSGAGAEEFALTQGFTLVQNSYFDTEERYQQLLDAKQKLQAAEKSAQIAGIEMKDLDYKFGTVGAVALDKQGNLAAGTSTGGMTAKRFGRIGDSPVIGAGTYAENGVCAVSATGHGEYFIRYLVAGDICAKVKYQQKSIIQAADEVINQRLITAGGTGGVIAVDHRGNIATPFNTEGMYRATRSNGEPAQVMIWQDQ
>NC_017566.1|WP_011789408.1|2370859_2371276_-|CBS-domain-containing-protein
MDSIKIRDHMDRQPVLLRADMSLATAVEKLLENHKMGAAVVDDNGNLVGFLSQQDCLAVMLKSTYHCDMTSVVKDCMRTEVLFVGPDDSILQLAEQMLGAKPKTYPVVDQGKVIGTINRTNVLKAMNVYMQQCYLAPA
>NC_017566.1|WP_041411982.1|2366883_2370765_-|ATP-dependent-RNA-helicase-HrpA
MVLNSDKHPLSNAFLNLCYQSDASRIRRRLFKLNKEADSDKKTHQLAQLTEQAQTAFEKVVQRRNARPKITYPENLPVSLMRDEIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGCRGMIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVETRYRPLVQDTDADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIRDTAEQLSRRNYRDTEILPLYARLSYGEQSKVFHSHRGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFTDPEILRTNLASVILQMLAIGLGDIGAFPFIEPPDPRHIRDGFLLLEELQAVKHQHGKLVLTPLGRQLAQIPVDPRLARMVVESHQLGCLNEVLVIAAGLSIQDPRERPMDKKQASDEAHRRFADPHSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAVHDLKWRLNDTPATYDTLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGPKWIMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLYGLTIVHRRKVQYGPIDPIEAREIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRRRDILVDEQVLMDFYEPRIPQGIYNAQLFFGWWKKAKREQPDLLDFNKALLMQRSADHISALDFPDTWHKGNLRLKLSYHFEPSAADDGVSVHIPVALLNQIDEMDFDWLVAGLREEKCIALIKSLPKSLRRNFVPAPDYARACVQAMVPFSASLLEAMCKQLLRMSGTRVNPEDFDLTQIPLHLQMNFKIEDDKHKLIAEGRMLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGELPKQYQQQKGNYQVRAFPALIDNKDSVAIKLFDDELEAQDAHRQGLRRLLLLNIPSPVKHLQQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDQLQFEQAKDWVRQELNPTAEQIALKVEQILTLYQGIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVEACGWSRLGDVARYLKAIEIRIDKLPVDPTRDRLHMQSINKVQEILAAQLAKVPRSVPTPQTLIEARWMIEEYRVSCFAQVLGTAYPISEKRILNHIQQG
>NC_017566.1|WP_011789406.1|2366201_2366360_-|nitrate-reductase
MSANTAEEKSLELKIFIFLTVFLAPLLTVVLVSGLGFAIWFSQILTGPPGAG
>NC_017566.1|WP_011789416.1|2382877_2384311_-|glyceraldehyde-3-phosphate-dehydrogenase
MSADKHLQSWQERFEMAEAMQPLLGKLYRNQGVEVVVYGKPLLNASTIEIIKAHRLVRRHVGEKLRLRESFPFVQALSKLAVKQCKVDIGKLAVNYWRDHTDVSEIESYMAKELADAIDHADDVAPRDVVLYGFGRIGRLLARLLIERTGRSNKLRLRAIVLRGGKKGDLEKRASLLRRDSVHGPFNGSVEVDEENNAIIANGTYIQVIYANSPDEVDYTKYDINDALVVDNTGIWKDEAGLGLHLKSPGASKVLLTAPAKGAIKNIVYGVNEGDITPEDIIVSAASCTTNAITPVLKAVNDKYGIENGHVETIHSYTNDQNLIDNYHTADRRGRSAPLNMVITETGAAKAVAKALPVLAGKLTGNAIRVPTPNVSMAIISMNLNAETNKDELNEYLKDTALQSPLQNQIDYTDSTEIVSSDLVGSRYAGVVDSQATIAEGKRAILYVWYDNEFGYSCQVVGVMQTMLGLTTLSLPA
>NC_017566.1|WP_014610628.1|2384514_2385402_+|DUF2989-domain-containing-protein
MRQNLVIITSFTLGMSILGLFGCDNGRNIAIICKNNPEICADLHKDSWCLAEKTQLIRDRYTLKDTTHPTGKQLYLQLTYLEDYSRCIELAAGVQHIIHTSRTADRARAFRLSTENLTQLQEQTRERQDPFMSYYQWTRFGDTQALNRLLEHENAGEVTDPFLLAQIATYYSNRDAIKSQQLYLKVLSEIQYDDFDVNWLLGLASTFRHTQQFDKTYMLTKANLLLTQQKYSEDKMLALLSNNKTLAAKLDKYAQTLIDALKNGNYSTSSVRKWLEPAPQILPAETITTEPVPEK
>NC_017566.1|WP_014610629.1|2385608_2386619_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIRVAINGYGRIGRNVLRALYESEKVYPIKIVAINDLGDASINAHLTKYDSVHGRFNAKVDHDAEAIYVNGDKILTFQERDPAKLPWAELQVDVVFECTGIFTSKETVQPHLTAGAKKVIISAPGKNVDATVVYGVNNNVLTSDMTVISNASCTTNCLAPFAKPLNDEIGIESGLMTTIHAYTNDQRLSDVYHTDLRRARAAALSMIPTKTGAAAAVGLVVPELQGKFDGLAVRVPTVNVSLVDLSFIAARDTTVEEVNAIIERAASVAPLSEVLAVNKEPLVSIDFNHNAFSSNFDATQTRVNGRLVKVMSWYDNEWGFSNRMLDNAVALMNAK
>NC_017566.1|WP_014610630.1|2386777_2387860_-|quinolinate-synthase-NadA
MSQLAPSPFAPTIETIDYPFPPKPVPLSDAQKADYKARIKQLLTEKDAVLVAHYYTDPEIQALAEETGGCVSDSLEMARFGRDHSAKTLIVAGVKFMGETAKILSPEKTILMPTLEATCSLDLGCPIDKFSAFCDAHPDHTVVVYANTSAAVKARADWVVTSSIALEIVEHLDSEGKKIIWGPDRHLGSYIAKQTGAEMLMWQGDCIVHDEFKANALRDMKSVYPDAAILVHPESPASVVAMADAVGSTSQLIKAAQTMPNERFIVATDRGIFYKMQQAAPGKTLIEAPTGGNGATCKSCAHCPWMAMNGLQAIEASLADSDKTTHEIFVDEDLRVKALIPLTRMLDFAKTLNMKVKGNA
>NC_017566.1|WP_014610631.1|2387992_2389621_-|dihydrolipoyllysine-residue-acetyltransferase
MIKDFILPDIGEGVVECELVEWLVKEGDTVVEDQPIADVMTDKALVQIPAPFAGVVTKLYYAKGDIAKVHAPLYAVQIEDAEIAGEESVAAEPAAAATIAKAAEPVAVTNATTSSSSSVSIEEFLLPDIGEGIVECELVEWLVSEGDWVEEDQPIADVMTDKALVQIPAIKAGKIAKLHYRKGQLAKVHAPLFAIEVEQAASTPAATTNTDTVANVAGAAQAVSAEPARQGKALASPAVRRMARSLDIDLSRVPGTGKHGRVYKEDITRFQQGASNVSASSATQVKEAPVHATQASQTQVPISTVTQRADTVEPIRGVKAVMARMMVESVSSIPHFTYCEEFDLTDLVALRESMKVKYSSDEVKLTMMPFFMKSMSLAIGQFPVMNSQVNADCTELTYKARHNIGMAVDSKVGLLVPNIKDVQDKSILEIAAEITRLTQAARSGRVAPADLKDGTISISNIGALGGTVATPIINKPEVAIVALGKLQTLPRFNAKGEVEARQIMQVSWSGDHRVIDGGTIARFCNLWKQYLEQPQEMLLAMR
>NC_017566.1|WP_014610632.1|2389630_2390608_-|alpha-ketoacid-dehydrogenase-subunit-beta
MAEMNMLQAVNEALSIAMQADERMVVFGEDVGHFGGVFRATSGLQEKFGRARCFNTPLTEQGIAGFANGLASNGMTAVAEIQFADYIFPAFDQIVNESAKFRYRSGNEFDVGGLVFRTPYGGGIAGGHYHSQSPEAYFTQTPGLKVVVPRNPEQAKGLLLASIRDKNPVIFFEPKRLYRASVGEVPAGDYEIELGKAEVVREGKDITLVAWGAQMEILEKAADMAAKEGISCEVIDLRTLSPWDIDTVADSVKKTGRLLVNHEAPLTGGFAGEIAATIQQECFLYLESPISRVCGLDTPYPLVHEKEYMPDALKTFEAIKASVTF
>NC_017566.1|WP_006081586.1|2390611_2391790_-|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MSKATLNTDTVHRVGFLDKASLHIPILRILQADGTTYETAVLPVIDETLATKIYDTCVFTRVLDERMLGAQRQGRISFYMTCTGEEAAIVGSVAALDQEDVILAQYREHAALRYRGFTTEQFMNQMFSNEKDLGKGRQMPIHYGSAALHYQTISSPLATQIPQATGVGYSLKMQGKRKVAVCYFGEGAASEGDFHAGLNMAAVLKCPVIFFCRNNGYAISTPTEEQFAGNGIASRGVGYGMHTIRVDGNDMLAVLAATQQARAYAIEHNAPVLIEAMTYRLGAHSSSDDPSGYRSKDEEAKWQQHDPVKRFKLWLINKGWLAEADDVKLHEKYREEVLAAVKVAEKIPVPMLDEIIEDVYDKPTPVLKKQLADLKEHIKKYPQAYPKSAGRL
>NC_017566.1|WP_014610633.1|2391952_2392987_-|succinylglutamate-desuccinylase
MLQALLDSKDFLALTLAHPEQFDGEFSFNLGDHTQVEVWDTGVIVFEPIQNEGKDIVLSCGVHGNETAPIELCNSLIKQLLQQKIIAKQRTLFLIGNPLAINNGTRIIDENMNRLFSGEHSNPPGLVNPERVRAKKLEAYVDRFYTTVADGRQRIHYDLHTAMRASKHEKFAIYPYRPGRAFSGEQIMFLAASGIDTVLFHHEPTTTFSYFSSERYGADAFTIELGKVYPMGQNDMTRFIATHEMFMRLITAKPLELDAFDADKVNLYQVCRVINKHFDDFEFTFATDVENFRSFPKGFVLAREGGKEIKVEHEFESVVFPNAKVPIGNRTVICLIPAVNADVR
>NC_017566.1|WP_014610634.1|2393283_2393763_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MALATFGAGCFWGVEYFFRQVNGVLNATCGYMGGNNAATTYEEVKKGKTGHAEVVQVEFDPALVSYEDLLDVFWKNHNPTSLNMQGGDIGTQYRSTIFFHDREQKAAAEASKLAFARSGRWGLRHIVTEIVPLQQFHVAEEYHQNYIDKNNLPSCHIEY
>NC_017566.1|WP_014610635.1|2393846_2395499_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MAIHQRAGQIASQMELVNIPKLMSHYYSITPNMDDVQQRVTFGTSGHRGCAFNGSFNQQHIWAIAQAVVDYRQSVDINGPLILGIDTHALSFAAYLSAIEVLAANKVTVHIQQNDGFTPTPVVSHAVICANREANLNGAALSDGLIITPSHNPPQDGGIKYNPPHGGPAEGNITAWIESRANDYLRTQLKGVNKLAYVDALTSGYVHAIDLITPYVADLENVIDMQAIAKAKLKLGVDPLGGSGIHYWAPIAKHYGIDITLVNDKVDPSFSFMPLDKDGKIRMDCSSPYAMAGLLAHKESFDLCLGNDPDYDRHGIVCPGTGLMDPNHYLAVAIDYLLTHRPQWSDSLAIGKTLVSSALIDKICAFHGKKLLEVPVGFKWFVDGLAEATIAFGGEESAGAAFLRRDGTTWCTDKDGFILGLLAAEILAVTGKTPGQRHQELVKQFGQSFYKRIDSPISLENKAKFALLNAETLNATVLAGETIESVLTHAPGNNAAIGGIKVTTANGWFAARPSGTEALFKIYGESFISEQHLAEIIKDAQALIDKALNA

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Crispr_ID: NC_017566_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_4

2405045-2405149

Orphan

Consensus_repeat	Method
AGGAAAACTATGAGTCACTTATTTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017566_4

>merge|NC_017566|4|2405045-2405149|CRISPRCasFinder
AGGAAAACTATGAGTCACTTATTTGCCCGCTTTTATAACACGAATGAAGCTTATCTAACGCTGGCCTTCGAATAAATAGGAAAACTATGAGTCACTTATTTGCCC

>NC_017566|4|4|2405045-2405149|CRISPRCasFinder
AGGAAAACTATGAGTCACTTATTTGCCC	GCTTTTATAACACGAATGAAGCTTATCTAACGCTGGCCTTCGAATAAAT
AGGAAAACTATGAGTCACTTATTTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_014610638.1\|2403633_2404848_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NC_017566.1\|WP_014610636.1\|2400429_2401251_-\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610644.1\|2416405_2418685_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|237277
NC_017566.1\|WP_011789441.1\|2412265_2413120_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183082
NC_017566.1\|WP_011789444.1\|2418697_2419339_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380065
NC_017566.1\|WP_014610637.1\|2401465_2402848_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671
NC_017566.1\|WP_014610643.1\|2414817_2416191_-\|IS4-like-element-ISSpu9-family-transposase	unknown	unknown	gnl\|CDD\|373239
NC_017566.1\|WP_011789430.1\|2398462_2399641_+\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	unknown	unknown	gnl\|CDD\|378385
NC_017566.1\|WP_011919251.1\|2395545_2396103_-\|replication-initiation-negative-regulator-SeqA	unknown	unknown	gnl\|CDD\|236874
NC_017566.1\|WP_011789440.1\|2410482_2411955_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NC_017566.1\|WP_014610640.1\|2407261_2407903_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NC_017566.1\|WP_011789427.1\|2397263_2397485_+\|DUF2788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378526
NC_017566.1\|WP_011789429.1\|2397825_2398353_+\|flavodoxin-FldA	unknown	unknown	gnl\|CDD\|236439
NC_017566.1\|WP_041412337.1\|2407923_2409750_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NC_017566.1\|WP_014610639.1\|2405743_2407093_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|235403
NC_017566.1\|WP_011919250.1\|2396385_2397162_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|182637
NC_017566.1\|WP_011789442.1\|2413304_2414744_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NC_017566.1\|WP_011789431.1\|2399685_2400246_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_017566.1\|WP_011789428.1\|2397496_2397769_+\|LexA-regulated-protein	unknown	unknown	gnl\|CDD\|183272
NC_017566.1\|WP_014610642.1\|2409774_2410473_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_014610638.1\|2403633_2404848_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NC_017566.1\|WP_011789427.1\|2397263_2397485_+\|DUF2788-domain-containing-protein	gnl\|CDD\|378526	pfam10981, DUF2788, Protein of unknown function (DUF2788). This bacterial family of proteins have no known function.	2.45406e-13
NC_017566.1\|WP_014610644.1\|2416405_2418685_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|237277	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.	0
NC_017566.1\|WP_011789442.1\|2413304_2414744_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NC_017566.1\|WP_011789444.1\|2418697_2419339_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380065	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in the Pseudomonas aeruginosa PsrA which regulates the fadBA5 beta-oxidation operon. Functional analysis of PsrA indicated its importance in regulating b-oxidative enzymes. It has also been suggested that PsrA, a member of the TetR family of repressors, could affect global gene expression including activation of rpoS.	1.78454e-31
NC_017566.1\|WP_014610637.1\|2401465_2402848_-\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	6.4315e-42
NC_017566.1\|WP_014610643.1\|2414817_2416191_-\|IS4-like-element-ISSpu9-family-transposase	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	7.04967e-18
NC_017566.1\|WP_011789430.1\|2398462_2399641_+\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	gnl\|CDD\|378385	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP. This entry includes family members such as EarP enzymes which are essential for post-translational activation of elongation factor P(EF-P). It was identified as EF-P arginine R32 specific rhamnosyl transferase in Shewanella oneidensis using dTDP-beta-L-rhamnose as donor substrate. This was further confirmed for Pseudomonas aeruginosa, Pseudomonas putida, and Neisseria meningitidis. As for S. oneidensis and P. aeruginosa, EarP enzyme acts as an inverting glycosyltransferase, thus mediating the formation of an alpha-L-rhamnosidic linkage. Structural analysis show that EarP is composed of two opposing domains with Rossmann folds, thus constituting a B pattern-type glycosyltransferase (GT-B) and provide basis for arginine glycosylation by EarP. Mutational analysis of efp and earP genes, resulted in a substantial decrease in the production of rhamnolipids and pyocyanin (important factors for colonization and invasion during infection) of P. aeruginosa. Collectively this indicates that EarP and EF-P are essential for P. aeruginosa pathogenicity.The protein family is also annotated in the CaZy Database as GT104.	0
NC_017566.1\|WP_011919251.1\|2395545_2396103_-\|replication-initiation-negative-regulator-SeqA	gnl\|CDD\|236874	PRK11187, PRK11187, replication initiation negative regulator SeqA.	6.71494e-98
NC_017566.1\|WP_011789440.1\|2410482_2411955_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NC_017566.1\|WP_014610640.1\|2407261_2407903_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.83668e-132
NC_017566.1\|WP_011789441.1\|2412265_2413120_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NC_017566.1\|WP_011789429.1\|2397825_2398353_+\|flavodoxin-FldA	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	8.59013e-107
NC_017566.1\|WP_041412337.1\|2407923_2409750_-\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NC_017566.1\|WP_014610639.1\|2405743_2407093_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	gnl\|CDD\|235403	PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NC_017566.1\|WP_011919250.1\|2396385_2397162_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|182637	PRK10673, PRK10673, esterase.	1.09673e-77
NC_017566.1\|WP_011789431.1\|2399685_2400246_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.37873e-91
NC_017566.1\|WP_011789428.1\|2397496_2397769_+\|LexA-regulated-protein	gnl\|CDD\|183272	PRK11675, PRK11675, LexA regulated protein; Provisional.	1.25319e-44
NC_017566.1\|WP_014610642.1\|2409774_2410473_-\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	3.70282e-79

>NC_017566.1|WP_014610638.1|2403633_2404848_+|pyridoxal-phosphate-dependent-aminotransferase
MRPIIKSNKLDTVCYDIRGPVHKEARRLEDEGHRILKLNIGNPAPFGFEAPEEIVRDVILNLPSAQGYCESKGLFSARKAIVQHYQAQGIFGVDIEDIYIGNGVSELIMMAMQGLLNTDDEILIPSPDYPLWTAAANLAGGKAVHYRCDEEADWFPDLNDIKSKISSRTRGIVLINPNNPTGAVYSRELLLQVVELCRQHDLILFADEIYDKILYDEAKHIPAAGLSDDILTVTFNGLSKAYRAAGFRVGWMMLSGNLKAAKSYIEGLEMLSSMRLCANVPNQHAIQTALGGYQSINELILPNGRLTVQRDACYELLNQIPGVSVKKPKGALYAFPKLDMKKFNLRDDERLVLDLLREKKILLVHGSAFNWPEPDHLRVVFLPYKEDLNKALTEFGDFLENYRQ
>NC_017566.1|WP_014610637.1|2401465_2402848_-|sodium:proton-antiporter
MSEPTALSLIPPLVVLVLAIWLRRPILSLIIGAVSGLLLLDPSEVLNNFASASLKVMGDETIGWLILVCGCFGALIALLVRTGGALAFGHNALKFAKGPKSSLFMTFILGIVIFIDDYLNALTVGETMKRVTDKFKVSREMLAYVVDSTAAPVCVLVPLSTWAVFFGGLLVDNGVAAQGQGIAVYMQAIPYMLYAWLAVAMVLLVVLGIVPAIGPMKKAQLRAAQGEPAQEQVDFELVQTSDEYAVKAIEEEFKHADNHGKLHNFLVPIGLLVAFTVYFDIDVWKGLLATLVFTLPYYAVQRLMPLSEMMDQMIDGFKGMLPAIGTVIAAFVFKDVCDQLLLPQYVITALSPFMTPSLLPAVVFLSMSVLAFATGSSWGIFAVTIPIVMPLAQSVGADIPLVIGALLSASSFGSQACFYSDSTVLAAQGSGCNLVSHAVTQLPYALIAAVLAFVGFILIA
>NC_017566.1|WP_014610636.1|2400429_2401251_-|hypothetical-protein
MDKKAKKILFSTYWKNGWIDSKDRVLNADDFEYAKSKGLMFEPISISHDECIASIVDLVANISKAQIAKGFLSSLTSRRLDLRSSLSSYSMAKHIPAHQYTPVISGTSYKEGIATSHSYTCCICRDVQYGVAGAEAYVNTDLNVLNFERIKWGGVRHGNILYMLFDLEQFNNTDIPEPTSDDIFCFKEILKTIENSAPEDYPSTLEKRLATVIKSSKTEREMLIEILASMGVLKPSHYDRPRRGKNDWVFAEYWRGEDKYSREAIGEYFAKYI
>NC_017566.1|WP_011789431.1|2399685_2400246_+|elongation-factor-P
MKTAHEIRPGNVIMLDGSPWVVQKTETTRSGRNAAIVKLKLKNLLLNSGTETTFKGEDKLEDIVLDRLDCTYSYFADPMYVFMDAEYNQYDVEAENLGDAAAYIVDGMEETCQVTFYDGKAISVEMPTTIVREVIYTEPSARGDTSGKVMKPATITGGGTVSVADFVKVGDKIEIDTRTGEFKKRV
>NC_017566.1|WP_011789430.1|2398462_2399641_+|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP
MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDPRKAIQTFNDVNIIHWIEPLPIAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWLNLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGGLICEQDLFAKRDVWQANTANKLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHLLPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLGAFIQLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPVSLPLLQHAKQWPIDAINAADLATRLVQFVKKS
>NC_017566.1|WP_011789429.1|2397825_2398353_+|flavodoxin-FldA
MATVGLFFGSDTGNTEAVAKMIQKKLGKKMVEVKDIAKSTKEQIAEYDLLLFGIPTWYYGEAQCDWDDFFPELEQIDFTDKLVAIFGCGDQEDYAEYFLDAMGMVGDIVQARGGIIIGHWPTAGYNFEASKGQVDDDHFIGLGIDEDRQPELTEERVDAWVKQIYEEMCLAELED
>NC_017566.1|WP_011789428.1|2397496_2397769_+|LexA-regulated-protein
MAKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQDLYDALNEQALASNISRSQLIELILQRQIEC
>NC_017566.1|WP_011789427.1|2397263_2397485_+|DUF2788-domain-containing-protein
MLSQYMEQIETIGLNLFFAAIFFFIGMAIHDVLKQGNVPKFGRFIVWLVLFLGCAGFIAKGIIQITWEGSGIG
>NC_017566.1|WP_011919250.1|2396385_2397162_+|alpha/beta-fold-hydrolase
MNYVSSGQGHAVLIIHGLFGNLDNLKGLGQVLESQHQVIRVDVPNHGLSEHWDHMDYPRLAHAMIDLLDNLDIAHAHIIGHSMGGKIAMATALAFPERIISMVAADIAPVAYEPRHDIVFAALESLPLEGHTDRRFALNHLINHGIDEATAQFLLKNLQRTDTGFRWKMNLSGLKTCYPNIIGWHNQPPNPVLSYSGPSLFIRGGDSNYVNSEHRDAIMAQFPTAQAKTLEGCGHWLHAQKPAIFNRIVSEFIDKQAM
>NC_017566.1|WP_011919251.1|2395545_2396103_-|replication-initiation-negative-regulator-SeqA
MKYIEVDEELYRHIASKTERIGESASDILRRLLGLSVNTIEQVEPQAISQPSLEAVEQKPLVTSVPVIESSVPVSDFKQLVDEHKLAQQKGAVGRFLFLLESLYQQSQSQFSQILQIQGRDRLYFARSREELLKASPSANPKEIGSSGFWVTTNNNTAKKQAILVEVLVQFGCDAEVAYAISQRV
>NC_017566.1|WP_014610639.1|2405743_2407093_+|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein
MTSSVWQERRHGEDKQRRFDHRSPYQRDRARILHSAAFRRLQAKTQVLGVGMNDFYRTRLTHSLEVSQIGTGIAAQLRRKYPQHKQLLCSMSLLESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILSKLEPYTLDFGMNLCRRTMLGILKYPAPYSKLFVAGEHNEITNHRQLKPSQWPPVKGIFDDDNDIFAWVLEPLSEADSRRFTSTQQGSHPALHHYPHLRTQFKSFDCSIMELADDIAYAVHDLEDAIVMGIVTASQWHQDVAPTLTNSSDAWIKQELADIGNKLFSHEHHLRKDAIGTLVNGFVTAIVISEDDVFEEPLLRFNATLEPEFAIALNVLKQLVYKYVIRKPEIQMLEYKGQQIVMGLFEAFASDPERLLPLNTQVRWRESEQQGLNTHRILADYISGMTDEFAGRLYQQLFSPKAGSNVELSKEM
>NC_017566.1|WP_014610640.1|2407261_2407903_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MLENNWSLQPQDIFKRSPIVPVMVINKIEHAVPLAKALVAGGISVLEVTLRTPCALEAITKIAKEVPEALVGAGTILNETQLEQAIAAGAQFIITPGATVELLKAGMQGPIPLIPGVASISEVMAGMALGYTHFKFFPAEASGGVNALKAFSGPLADIRFCPTGGITPSSYKDYLALKNVDCIGGSWIAPTDAMEQGDWARITQLCKDAIGAL
>NC_017566.1|WP_041412337.1|2407923_2409750_-|phosphogluconate-dehydratase
MHSVVQAVTDRIIARSKASRAGYLAALNDARHHGVHRSSLSCGNLAHGFAACKPDDKNALRQLNKANIGIVTAFNDMLSAHQPYESYPELLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTEMGTQYTPIGEVVSEKSVVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVPLVARVYPNGHADINHFHAAGGMAYLIKELLDAGLLHEDVNTVAGFGLRRYTQEPRLLDGELCWVDGPTTSLDTEVLTSVASPFQGNGGLKLLKGNLGRAVIKVSAVQEQHRVVEAPAVVIDDQNKLDALFKVGALDRDCVVVVKGQGPKANGMPELHKLTPLLGTLQDKGFKVALLTDGRMSGASGKVPAAIHLTPEALDGGLIAKVQDGDLIRVDALTGELSLLVSETELATRAAGIVDLHRSRYGMGRELFSALRSNLSSPETGARCTNAIDELY
>NC_017566.1|WP_014610642.1|2409774_2410473_-|6-phosphogluconolactonase
MIKETVFKSFDTPSALEQQLANKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADERWVDVEDHASNERLVREHLLQHRAANAKFRGLKNMFSTAEAGADMAGESLSNFPRPFDVVVLGMGNDGHTCSWFPCSAELEHALTTQDLCVATNPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKTPVDVFWSA
>NC_017566.1|WP_011789440.1|2410482_2411955_-|glucose-6-phosphate-dehydrogenase
MGKTTSGAKACDFVLFGTKGDLARRKLLPSLYQLDKAELLDKDTKVIGVAKDEFSQEEFRELVTLALNTFVKESLCEETLQRFLSRCHYIGTNFTDSAGYSAFHDLLKPEERVMVSYFATPPAIFGDICRCLHEQDLIHPDSRVVLEKPIGSDLESSRVINDQVSAYFKERQVYRIDHYLGKETVQNLIALRFANSLFASKWDNRTIDHVQITVAEEVGIEGRWGYFDKAGQMRDMIQNHLLQVLTLVAMDPPVNLDADSIRDEKVKVLKSLRPINSDNVYENTVRGQYSAGFLKGSPVPGYLEEEGANLQSHTETFVAIRVDIDNWRWAGVPFYLRSGKRMPFKSSEIVVYFKNPPHNLYRSSYRNLPPNKLTIRLQPHEGVEIQMMNKVPGLEQKQRLQTTKLDLSFSDTFKNERIADAYERLLLEAMLGNQALFVRRDEVEQAWTWVDGIIQSWEQSNEKPKPYPAGTWGPVASVALITKDGRSWDE
>NC_017566.1|WP_011789441.1|2412265_2413120_+|MurR/RpiR-family-transcriptional-regulator
MNTLEKVQKSLTHFSKSERKVAEVILASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDTKGFPDFKLHLAQSLANGTPYVSRHVEEDDSTESYTTKIFESSMASLDTARQSLDVSAINKAVDILTQAKTISFFGLGASASVAHDAQNKFFRFNVPVICFDDVLMQRMSCINSNEGDVVVLISHTGRTKSLIEIARLARENGAAVIGITARNSPLSMECTLPVTMEVPEDTDMYLPMASRLAQLVTIDVLATGFTLRRGPRFRDNLKRVKEVLKESRINKDPIL
>NC_017566.1|WP_011789442.1|2413304_2414744_+|pyruvate-kinase
MFRRTKIVTTLGPATDRDDNLRRIIAAGANVVRLNFSHGSPEDHLKRATQAREIAKELGVHVAILGDLQGPKIRVSTFKDNKKVQLKLGQAYVLDAELAKGEGDETQVGIDYKQLPDDVTVGDILMLDDGRVQLRVEGVEGRKVHTTVTVAGPLSNNKGINKQGGGLSAAALTEKDKADILTAAMIQVDYLAVSFPRSGADLDYARDLARQAGCNALIVAKVERAEAVATDEAMDDVILASDVVMVARGDLGVEIGDAALVAVQKKLIARSRQLNKIVITATQMMESMISSPMPTRAEVMDVANAVLDGTDAVMLSAETAAGDFPEETVKAMANVCVGAESHPSVKVSKHRLDARFTSVEETIALSTMYAANHLEGVKAIIALTESGATPQMMSRISSSLPILGLSRHATTLAKMALYRGVLPIYFDSTIYPADLLAQKALESLTTAGYLQSGDLVLMTKGDAMETIGGTNTCKVLIVA
>NC_017566.1|WP_014610643.1|2414817_2416191_-|IS4-like-element-ISSpu9-family-transposase
MIKSNNDWAEEQFGHAKLGDPRRTARLVKMASDLAQHPGKSVVKSSPSPASMEGAYRFIRNDNVSADDIAEAGFRATVNQAHRYPLLLAIEDTTTLSYKHRSIRADLGHVNQGNRYRGLLAHSILLFAPETLDVVGLIEQHRWTRDIKTRGIRRENLKRPYEEKEGYKWESASRNMAARLGTAMANVISVCDREADIYDYLLYKIANQQRFVVRSMMSRHIEEGSDKLYHFASELNSVKQRQIQIAQRGGRKAREVTLDVKYAAVTLKTPANKKGSPISLNYVGCSEVGDEEKTLNWHILTNEPVNSAEDALKIIGYYEKRWLIEEYHKVWKSEGTGVEDLRVQSKDNLDRLATIYAFLAVRIFQLKFANEQIEDISSEKILSPRAWKLLWLKRIKTPPPEEVPTAKWAYEHLARLGGWKDSKRNGRASVKTLWEGWLKLQAILEGYELALSLEQDL
>NC_017566.1|WP_014610644.1|2416405_2418685_-|acyl-CoA-dehydrogenase
MLTIIILALIAIVVLFAVKNIRMQFITRPVFSFFKKVLPPLSDTEREAMEAGDVWWEGELFRGNPNWNILHSYGKPTLSAEEKDFIDNQVMTALTMIDDFDIVHNRKDLPPELWEYFKKEGFFALIIPKKFGGKAFSAYANSTIVSKLASRSVSAAVTVMVPNSLGPGELLTHYGTNEQKERWLPALAKGDEIPCFALTGPEAGSDAGAIPDVGIVCRDTFNGEEILGLKLTWDKRYITLAPVATVLGLAFQMRDPEGLLGDKKNLGITCALIPTDHPGVVIGRRHNPLGMAFMNGTTQGKDVFIPLDWIIGGPDFAGKGWRMLVECLSAGRGISLPALATASGHMATKTTTAYSYVRHQFGMAIGQFEGVQEALARIIANTYQLEAARRLTTTGIDLKVKPSVVTAIAKFHMTELGRSVMNDAMDIQSGKGIQLGPKNYLGHPYMSNPISITVEGANILTRSLMIFGQGATRCHPYVLAEMEAAAMENQHEALERFDSLLMGHMGYATRNAFSALVNALTGSVFGNAPVSGETKQYYKDMSRISSALALMTDLSMLIMGGDLKRKEMLSARMGDVLSQLYLGSATLKLFEDNGRQQDDLPAVRYVMANRLHLAAKALEDTIRNFPNRPVSWLLRALIFPLGNHFNAPSDKMATELASGMLKPGPARERITFLCPEFEGDKGGIAEVEQAFVAQYACKEIYKKLKKAQRAGELPAKVPNLVLFAKALETGVITADEEQKLQHADKLRLAAIHVNDFETL
>NC_017566.1|WP_011789444.1|2418697_2419339_-|TetR/AcrR-family-transcriptional-regulator
MASRSDTKTRILDAAEKLFAERGFSETSLRLITSKAEVNLASVNYHFGSKKELIRAVLARYLDVFMPAASTEIKRLDAIPAQATLEEILSSLVAPLLELNQLRTEGTTIFLQLLGRGYIESQGHLRWFITTHYGQHLDTFVSAVSASAPHIPPAEMFWRLHFTLGTIVFTMASADALNDIAKAEFGEHNDIEAVIRKVIPYMAAGVSVPVSPQ

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Crispr_ID: NC_017566_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_5

2466805-2471935

Unclear

I-F:NA

Consensus_repeat	Method
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRISPRCasFinder
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRT
GTTCACCGCCGCACAGGCG-------------------------GCTTA------GAAA	PILER-CR
GTTCACCGCCGCACAGGCG-------------------------GCTTA------GAAA	PILER-CR

85 spacers

DinG,cas6f,cas5,cas7f,cas3f,cas1

The CRISPR arrays of NC_017566_5

>merge|NC_017566|5|2466805-2471935|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TCTACAAGCCGCCAGTGCGGCGGTGAACTTAAAGCCGCGTGTGCGGCTATTCAGATTTACTTTCTAAGCCGCCTGTGCGGCGGTGAACTGATCGAGTACAGCGGCATTGCCGAGTTAACGTTTCTAAGCCGCCTGTGCGGCGGTGAACTTACGATTGCTTTTTTAGCGCCCTTTGAATCTTTTCTAAGCCGCCTGTGCGGCGGTGAACACTGGGTTTACTGCTGGCGTCGGGGTGGCTGTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAATACATCTTCCGCACCCAACGAGCCGCGGCTTTCTAAGCCGCCTGTGCGGCGGTGAACAGTAGCGGTTTACGCTCACCCGTTGGCACTATTTTCTAAGCCGCCTGTGCGGCGGTGAACCCGTTTGTGGCTACAGGGAAATGCTCACGGCGTTTCTAAGCCGCCTGTGCGGCGGTGAACAATCTTAGTCGTGTTTTAGATTTTAATTGCGATTTCTAAGCCGCCTGTGCGGCGGTGAACGGTAAACTAGCTGAACCGCTAGCGGATAACGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTCTTGCGCCCAAGCGGTTTATCGTTAACAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACATCAATCGTAGCTTCATCGCCATTCTTGATTATTTCTAAGCCGCCTGTGCGGCGGTGAACCCAGAATCTACGTTCGACGAAATAGCTAATGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCCACAGGTATCGATTACAGAGTAAGCCTCCAATTTCTAAGCCGCCTGTGCGGCGGTGAACCTTTATCGTCCGTTGTTGACTGTCATAATTGCTTTCTAAGCCGCCTGTGCGGCGGTGAACTAGAGCGTGGTCGCAATCTTATATGCCAGTACTTTCTAAGCCGCCTGTGCGGCGGTGAACTTAAAATTTTAGGGTCATTCGGTAATGCTGAATTTCTAAGCCGCCTGTGCGGCGGTGAACGTGCAGGTTAACGAAGTGGTGCTTGAGCCAAATTTCTAAGCCGCCTGTGCGGCGGTGAACATGACAATGGCGCGGCCAGAGTTAGGGCGAATTTTCTAAGCCGCCTGTGCGGCGGTGAACAACAAGTTGAGCGCTCTGTCGCTCAATTAATCTTTCTAAGCCGCCTGTGCGGCGGTGAACTATAATGCCCTCGATATTACGCAAAACAAAATTTTCTAAGCCGCCTGTGCGGCGGTGAACACTGCGCACAATGTATATTAATTAGTCTGCTATTTCTAAGCCGCCTGTGCGGCGGTGAACTGGGCGAATATCGCTCACAATGTGAGTGTGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTGCATGTGGTGAAAAGTGGAAAGACCAACAATTTCTAAGCCGCCTGTGCGGCGGTGAACCAATCAGCGCAACAGCGACCAGCACAAAATCATTTCTAAGCCGCCTGTGCGGCGGTGAACGGCACTATGGGAAAACGTGCCGCTAACTTTGATTTCTAAGCCGCCTGTGCGGCGGTGAACAGGTCAGTGCCTTCACTCTCGGTGTAGTGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTGCAAAGATGACCACAAACGTTACATTCTATCTTTCTAAGCCGCCTGTGCGGCGGTGAACACCCACCAAAGAAAGTCTTTTAGAAAAGAAACTTTCTAAGCCGCCTGTGCGGCGGTGAACCATCAACTTTTTTATCTTCAAGAGAAGGTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACAATGTTGAGTATGTGGATAAGAGGTTTTTAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTCTTGCAAAATGCGCTTTATCTAAAATCAATTTTCTAAGCCGCCTGTGCGGCGGTGAACAGGCACAAATAATAGTCCGCAACTCAGCTATTTTTCTAAGCCGCCTGTGCGGCGGTGAACGATTAACCCTTTTGAAGTTGTCTTAGCTCCTTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAAATATATGAAATTAAGTAGCCGACAAAAAATTTCTAAGCCGCCTGTGCGGCGGTGAACCTGTGTACTCGACCATCTGCCCAGCGTTGCGATTTCTAAGCCGCCTGTGCGGCGGTGAACCGTTATACGCGCTATCCCCCCATAAATTTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACACCAAACGATCACTGATAAAAAGTTTATTCAATTTCTAAGCCGCCTGTGCGGCGGTGAACAATTAATGGAAAAAGGTAACAACTCCATTGAATTTCTAAGCCGCCTGTGCGGCGGTGAACCATAGGCGATTCTAAGTCCTGAGAATCTAAATTTTCTAAGCCGCCTGTGCGGCGGTGAACACAGAGGGGATAGGCGGGGTATCTAACCGCACATTTCTAAGCCGCCTGTGCGGCGGTGAACATGGATCTGAACCGCAAGAAGATAATGCAGAATTTCTAAGCCGCCTGTGCGGCGGTGAACGTGGCTCAGTGCCAACAAACAGGCGATCTAACTTTCTAAGCCGCCTGTGCGGCGGTGAACGGAACTGATTATAACTATCGACTGATTTACGATTTCTAAGCCGCCTGTGCGGCGGTGAACATGAAAACGCAAAGGGCATGCCGTCAATCAATTTTCTAAGCCGCCTGTGCGGCGGTGAACGCGATAGTGTGGGCAATTCATTATTAAGAATATTTCTAAGCCGCCTGTGCGGCGGTGAACAAAAAATCTATCATGGAAAGCGACAACTTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACAAAAAGAAATGAAATGCAAACTAAAACTTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACCACTAAACTTCCAACTCTAGAGCACGCGCTAATTTCTAAGCCGCCTGTGCGGCGGTGAACCCATGTCAGACATGATGGCTCGCCAGATGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACGGCCGAGTGCATAGCGATAGCATCTTGATCATTTTCTAAGCCGCCTGTGCGGCGGTGAACAAGTCACTAAAACATTACAAACTTCATCTGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAGTTGATACGAGCATAATGATTCGCAAAAAATTTCTAAGCCGCCTGTGCGGCGGTGAACGCATCGGCCATTTTTTTACCGTCGGTTTTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACAGTCATACAGCTTTAGTTGCCTATATCAATACTTTCTAAGCCGCCTGTGCGGCGGTGAACACCCCGTCAATAACTCGATAACTTGTGGTTCTTTTCTAAGCCGCCTGTGCGGCGGTGAACCGCTATAAAAATCAAGCATTTCAGACAATCGATTTCTAAGCCGCCTGTGCGGCGGTGAACGAGTGAATGCACTATTACTTTCTATCTTAGTTTTTCTAAGCCGCCTGTGCGGCGGTGAACAATATTTCTAAGGTTCACCAAAAAGCATTCAATTTCTAAGCCGCCTGTGCGGCGGTGAACAATGAGCTTGTATCTGCATTAGACGATGACCATTTCTAAGCCGCCTGTGCGGCGGTGAACCTTACAAATGCAAAGAGTAGCCGTAAGTCAAATTTCTAAGCCGCCTGTGCGGCGGTGAACATGGCCGATAAGTTTGGCTTAAGTACCGTTGATTTCTAAGCCGCCTGTGCGGCGGTGAACATGCAGTTTGCCTTTGCAATCCAGTTTGATACATTTCTAAGCCGCCTGTGCGGCGGTGAACCGTAAAAGATATCGATAATGTCAGTGCAATAGTTTCTAAGCCGCCTGTGCGGCGGTGAACGAGTATTTAACATGGCTTTACCTGCGATTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACCTGTTACAGCAATGCCCGAGATACCAAAAAAATTTCTAAGCCGCCTGTGCGGCGGTGAACATAAACCTTGGCTATGTGAGTGCTACCCGAACTTTCTAAGCCGCCTGTGCGGCGGTGAACGTAAATTCCAAAGACGGACAGTTTCTATTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTTGGTCTATTTGGCTTTATAAACTTGTAAAAATTTCTAAGCCGCCTGTGCGGCGGTGAACCTGCGCAATGACCCGCGCTTAGTTGTGTTAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAAAAAGCCGGTAGCATGGCGAGCAGGTTATATTTCTAAGCCGCCTGTGCGGCGGTGAACACAACAAAAACTGTACGTTTAATGCAGTTACTTTTCTAAGCCGCCTGTGCGGCGGTGAACATGATGATTATTCGTCTAGCTATGAGCTAGTTTTTCTAAGCCGCCTGTGCGGCGGTGAACTCAGTTACTAAAACTATAAGAGACTTACTTACTTTCTAAGCCGCCTGTGCGGCGGTGAACATCAATTGAGTAAAGCCCTAGCTCTTACACTATTTCTAAGCCGCCTGTGCGGCGGTGAACTCGTTTATTCATGTTAATCACTCCTTCATTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTATCGGTCATTATTTTCACACCCATTCTTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACATGACAAGTCTTCATTTAAATCTATCGGCTTGATTTCTAAGCCGCCTGTGCGGCGGTGAACGAGATTCACGCTTTGATGTGAAATTTCCAAGCTTTCTAAGCCGCCTGTGCGGCGGTGAACTAGCAACAGAAACCTGTTGAGTATTAGTAGAATTTCTAAGCCGCCTGTGCGGCGGTGAACGGTGATCACTTGCACGGGCGCCCAACTCGATATTTCTAAGCCGCCTGTGCGGCGGTGAACATTGTTGATGGTCATGTCTTGCAGGGCGTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACTAATGACTTCTCGACTTACTTCTTTACTCGTTTTTCTAAGCCGCCTGTGCGGCGGTGAACCCGAAGCGCCACCGAATATTTGTTGTGCTGTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAGTCGATAAGTTAGCTTCACATATTCACAACTTTCTAAGCCGCCTGTGCGGCGGTGAACACTGGTCGAGAGCATCATAGAGATTGGTGTCATTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_017566|5|5|2466805-2471935|CRISPRCasFinder
TCTACAAGCCGCCAGTGCGGCGGTGAAC	TTAAAGCCGCGTGTGCGGCTATTCAGATTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGATCGAGTACAGCGGCATTGCCGAGTTAACG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGATTGCTTTTTTAGCGCCCTTTGAATCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGGTTTACTGCTGGCGTCGGGGTGGCTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAATACATCTTCCGCACCCAACGAGCCGCGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTAGCGGTTTACGCTCACCCGTTGGCACTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGTTTGTGGCTACAGGGAAATGCTCACGGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATCTTAGTCGTGTTTTAGATTTTAATTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTAAACTAGCTGAACCGCTAGCGGATAACGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCTTGCGCCCAAGCGGTTTATCGTTAACAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATCGTAGCTTCATCGCCATTCTTGATTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCAGAATCTACGTTCGACGAAATAGCTAATGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACAGGTATCGATTACAGAGTAAGCCTCCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTATCGTCCGTTGTTGACTGTCATAATTGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGAGCGTGGTCGCAATCTTATATGCCAGTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAAATTTTAGGGTCATTCGGTAATGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGCAGGTTAACGAAGTGGTGCTTGAGCCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAATGGCGCGGCCAGAGTTAGGGCGAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAAGTTGAGCGCTCTGTCGCTCAATTAATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATAATGCCCTCGATATTACGCAAAACAAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGCGCACAATGTATATTAATTAGTCTGCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGGCGAATATCGCTCACAATGTGAGTGTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCATGTGGTGAAAAGTGGAAAGACCAACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAATCAGCGCAACAGCGACCAGCACAAAATCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCACTATGGGAAAACGTGCCGCTAACTTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTCAGTGCCTTCACTCTCGGTGTAGTGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCAAAGATGACCACAAACGTTACATTCTATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCACCAAAGAAAGTCTTTTAGAAAAGAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATCAACTTTTTTATCTTCAAGAGAAGGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGTTGAGTATGTGGATAAGAGGTTTTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCTTGCAAAATGCGCTTTATCTAAAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGCACAAATAATAGTCCGCAACTCAGCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTAACCCTTTTGAAGTTGTCTTAGCTCCTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAATATATGAAATTAAGTAGCCGACAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTGTACTCGACCATCTGCCCAGCGTTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTTATACGCGCTATCCCCCCATAAATTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCAAACGATCACTGATAAAAAGTTTATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTAATGGAAAAAGGTAACAACTCCATTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATAGGCGATTCTAAGTCCTGAGAATCTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGAGGGGATAGGCGGGGTATCTAACCGCACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGATCTGAACCGCAAGAAGATAATGCAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGCTCAGTGCCAACAAACAGGCGATCTAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAACTGATTATAACTATCGACTGATTTACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGAAAACGCAAAGGGCATGCCGTCAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGATAGTGTGGGCAATTCATTATTAAGAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAATCTATCATGGAAAGCGACAACTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAGAAATGAAATGCAAACTAAAACTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACTAAACTTCCAACTCTAGAGCACGCGCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATGTCAGACATGATGGCTCGCCAGATGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCGAGTGCATAGCGATAGCATCTTGATCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGTCACTAAAACATTACAAACTTCATCTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGATACGAGCATAATGATTCGCAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATCGGCCATTTTTTTACCGTCGGTTTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTCATACAGCTTTAGTTGCCTATATCAATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCCGTCAATAACTCGATAACTTGTGGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCTATAAAAATCAAGCATTTCAGACAATCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTGAATGCACTATTACTTTCTATCTTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTTCTAAGGTTCACCAAAAAGCATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGAGCTTGTATCTGCATTAGACGATGACCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACAAATGCAAAGAGTAGCCGTAAGTCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGCCGATAAGTTTGGCTTAAGTACCGTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGCAGTTTGCCTTTGCAATCCAGTTTGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTAAAAGATATCGATAATGTCAGTGCAATAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTATTTAACATGGCTTTACCTGCGATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTACAGCAATGCCCGAGATACCAAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAACCTTGGCTATGTGAGTGCTACCCGAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGGTCTATTTGGCTTTATAAACTTGTAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGCGCAATGACCCGCGCTTAGTTGTGTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAAGCCGGTAGCATGGCGAGCAGGTTATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAACAAAAACTGTACGTTTAATGCAGTTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGATGATTATTCGTCTAGCTATGAGCTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAGTTACTAAAACTATAAGAGACTTACTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATTGAGTAAAGCCCTAGCTCTTACACTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCGTTTATTCATGTTAATCACTCCTTCATTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATCGGTCATTATTTTCACACCCATTCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAAGTCTTCATTTAAATCTATCGGCTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGATTCACGCTTTGATGTGAAATTTCCAAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGCAACAGAAACCTGTTGAGTATTAGTAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTGATCACTTGCACGGGCGCCCAACTCGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTGTTGATGGTCATGTCTTGCAGGGCGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGACTTCTCGACTTACTTCTTTACTCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGAAGCGCCACCGAATATTTGTTGTGCTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTCGATAAGTTAGCTTCACATATTCACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_017566|5|3|2466805-2471935|CRT
TCTACAAGCCGCCAGTGCGGCGGTGAAC	TTAAAGCCGCGTGTGCGGCTATTCAGATTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGATCGAGTACAGCGGCATTGCCGAGTTAACG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGATTGCTTTTTTAGCGCCCTTTGAATCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGGTTTACTGCTGGCGTCGGGGTGGCTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAATACATCTTCCGCACCCAACGAGCCGCGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTAGCGGTTTACGCTCACCCGTTGGCACTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGTTTGTGGCTACAGGGAAATGCTCACGGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATCTTAGTCGTGTTTTAGATTTTAATTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTAAACTAGCTGAACCGCTAGCGGATAACGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCTTGCGCCCAAGCGGTTTATCGTTAACAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATCGTAGCTTCATCGCCATTCTTGATTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCAGAATCTACGTTCGACGAAATAGCTAATGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACAGGTATCGATTACAGAGTAAGCCTCCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTATCGTCCGTTGTTGACTGTCATAATTGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGAGCGTGGTCGCAATCTTATATGCCAGTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAAATTTTAGGGTCATTCGGTAATGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGCAGGTTAACGAAGTGGTGCTTGAGCCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAATGGCGCGGCCAGAGTTAGGGCGAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAAGTTGAGCGCTCTGTCGCTCAATTAATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATAATGCCCTCGATATTACGCAAAACAAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGCGCACAATGTATATTAATTAGTCTGCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGGCGAATATCGCTCACAATGTGAGTGTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCATGTGGTGAAAAGTGGAAAGACCAACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAATCAGCGCAACAGCGACCAGCACAAAATCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCACTATGGGAAAACGTGCCGCTAACTTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTCAGTGCCTTCACTCTCGGTGTAGTGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCAAAGATGACCACAAACGTTACATTCTATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCACCAAAGAAAGTCTTTTAGAAAAGAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATCAACTTTTTTATCTTCAAGAGAAGGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGTTGAGTATGTGGATAAGAGGTTTTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCTTGCAAAATGCGCTTTATCTAAAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGCACAAATAATAGTCCGCAACTCAGCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTAACCCTTTTGAAGTTGTCTTAGCTCCTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAATATATGAAATTAAGTAGCCGACAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTGTACTCGACCATCTGCCCAGCGTTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTTATACGCGCTATCCCCCCATAAATTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCAAACGATCACTGATAAAAAGTTTATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTAATGGAAAAAGGTAACAACTCCATTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATAGGCGATTCTAAGTCCTGAGAATCTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGAGGGGATAGGCGGGGTATCTAACCGCACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGATCTGAACCGCAAGAAGATAATGCAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGCTCAGTGCCAACAAACAGGCGATCTAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAACTGATTATAACTATCGACTGATTTACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGAAAACGCAAAGGGCATGCCGTCAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGATAGTGTGGGCAATTCATTATTAAGAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAATCTATCATGGAAAGCGACAACTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAGAAATGAAATGCAAACTAAAACTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACTAAACTTCCAACTCTAGAGCACGCGCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATGTCAGACATGATGGCTCGCCAGATGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCGAGTGCATAGCGATAGCATCTTGATCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGTCACTAAAACATTACAAACTTCATCTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGATACGAGCATAATGATTCGCAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATCGGCCATTTTTTTACCGTCGGTTTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTCATACAGCTTTAGTTGCCTATATCAATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCCGTCAATAACTCGATAACTTGTGGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCTATAAAAATCAAGCATTTCAGACAATCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTGAATGCACTATTACTTTCTATCTTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTTCTAAGGTTCACCAAAAAGCATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGAGCTTGTATCTGCATTAGACGATGACCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACAAATGCAAAGAGTAGCCGTAAGTCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGCCGATAAGTTTGGCTTAAGTACCGTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGCAGTTTGCCTTTGCAATCCAGTTTGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTAAAAGATATCGATAATGTCAGTGCAATAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTATTTAACATGGCTTTACCTGCGATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTACAGCAATGCCCGAGATACCAAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAACCTTGGCTATGTGAGTGCTACCCGAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGGTCTATTTGGCTTTATAAACTTGTAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGCGCAATGACCCGCGCTTAGTTGTGTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAAGCCGGTAGCATGGCGAGCAGGTTATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAACAAAAACTGTACGTTTAATGCAGTTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGATGATTATTCGTCTAGCTATGAGCTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAGTTACTAAAACTATAAGAGACTTACTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATTGAGTAAAGCCCTAGCTCTTACACTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCGTTTATTCATGTTAATCACTCCTTCATTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATCGGTCATTATTTTCACACCCATTCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAAGTCTTCATTTAAATCTATCGGCTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGATTCACGCTTTGATGTGAAATTTCCAAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGCAACAGAAACCTGTTGAGTATTAGTAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTGATCACTTGCACGGGCGCCCAACTCGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTGTTGATGGTCATGTCTTGCAGGGCGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGACTTCTCGACTTACTTCTTTACTCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGAAGCGCCACCGAATATTTGTTGTGCTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTCGATAAGTTAGCTTCACATATTCACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_017566|5|3|2466865-2467192|PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGATCGAGTACAGCGGCATTGCCGAGTTAACG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGATTGCTTTTTTAGCGCCCTTTGAATCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGGTTTACTGCTGGCGTCGGGGTGGCTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAATACATCTTCCGCACCCAACGAGCCGCGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTAGCGGTTTACGCTCACCCGTTGGCACTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAACCCGTTTGTGGCTACAGGGAAATGCTCACGGCGTTTCTAAGCCGCCTGTGCGGCGGTGAACAATCTTAGTCGTGTTTTAGATTTTAATTGCGATTTCTAAGCCGCCTGTGCGGCGGTGAACGGTAAACTAGCTGAACCGCTAGCGGATAACGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTCTTGCGCCCAAGCGGTTTATCGTTAACAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACATCAATCGTAGCTTCATCGCCATTCTTGATTATTTCTAAGCCGCCTGTGCGGCGGTGAACCCAGAATCTACGTTCGACGAAATAGCTAATGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCCACAGGTATCGATTACAGAGTAAGCCTCCAATTTCTAAGCCGCCTGTGCGGCGGTGAACCTTTATCGTCCGTTGTTGACTGTCATAATTGCTTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGAGCGTGGTCGCAATCTTATATGCCAGTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAAATTTTAGGGTCATTCGGTAATGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGCAGGTTAACGAAGTGGTGCTTGAGCCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAATGGCGCGGCCAGAGTTAGGGCGAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAAGTTGAGCGCTCTGTCGCTCAATTAATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATAATGCCCTCGATATTACGCAAAACAAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGCGCACAATGTATATTAATTAGTCTGCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGGCGAATATCGCTCACAATGTGAGTGTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCATGTGGTGAAAAGTGGAAAGACCAACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAATCAGCGCAACAGCGACCAGCACAAAATCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCACTATGGGAAAACGTGCCGCTAACTTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTCAGTGCCTTCACTCTCGGTGTAGTGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCAAAGATGACCACAAACGTTACATTCTATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCACCAAAGAAAGTCTTTTAGAAAAGAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATCAACTTTTTTATCTTCAAGAGAAGGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGTTGAGTATGTGGATAAGAGGTTTTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCTTGCAAAATGCGCTTTATCTAAAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGCACAAATAATAGTCCGCAACTCAGCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTAACCCTTTTGAAGTTGTCTTAGCTCCTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAATATATGAAATTAAGTAGCCGACAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTGTACTCGACCATCTGCCCAGCGTTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTTATACGCGCTATCCCCCCATAAATTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCAAACGATCACTGATAAAAAGTTTATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTAATGGAAAAAGGTAACAACTCCATTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATAGGCGATTCTAAGTCCTGAGAATCTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGAGGGGATAGGCGGGGTATCTAACCGCACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGATCTGAACCGCAAGAAGATAATGCAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGCTCAGTGCCAACAAACAGGCGATCTAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAACTGATTATAACTATCGACTGATTTACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGAAAACGCAAAGGGCATGCCGTCAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGATAGTGTGGGCAATTCATTATTAAGAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAATCTATCATGGAAAGCGACAACTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAGAAATGAAATGCAAACTAAAACTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACTAAACTTCCAACTCTAGAGCACGCGCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATGTCAGACATGATGGCTCGCCAGATGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCGAGTGCATAGCGATAGCATCTTGATCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGTCACTAAAACATTACAAACTTCATCTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGATACGAGCATAATGATTCGCAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATCGGCCATTTTTTTACCGTCGGTTTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTCATACAGCTTTAGTTGCCTATATCAATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCCGTCAATAACTCGATAACTTGTGGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCTATAAAAATCAAGCATTTCAGACAATCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTGAATGCACTATTACTTTCTATCTTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTTCTAAGGTTCACCAAAAAGCATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGAGCTTGTATCTGCATTAGACGATGACCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACAAATGCAAAGAGTAGCCGTAAGTCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGCCGATAAGTTTGGCTTAAGTACCGTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGCAGTTTGCCTTTGCAATCCAGTTTGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTAAAAGATATCGATAATGTCAGTGCAATAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTATTTAACATGGCTTTACCTGCGATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTACAGCAATGCCCGAGATACCAAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAACCTTGGCTATGTGAGTGCTACCCGAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGGTCTATTTGGCTTTATAAACTTGTAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGCGCAATGACCCGCGCTTAGTTGTGTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAAGCCGGTAGCATGGCGAGCAGGTTATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAACAAAAACTGTACGTTTAATGCAGTTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGATGATTATTCGTCTAGCTATGAGCTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAGTTACTAAAACTATAAGAGACTTACTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATTGAGTAAAGCCCTAGCTCTTACACTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCGTTTATTCATGTTAATCACTCCTTCATTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATCGGTCATTATTTTCACACCCATTCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAAGTCTTCATTTAAATCTATCGGCTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGATTCACGCTTTGATGTGAAATTTCCAAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGCAACAGAAACCTGTTGAGTATTAGTAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTGATCACTTGCACGGGCGCCCAACTCGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTGTTGATGGTCATGTCTTGCAGGGCGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGACTTCTCGACTTACTTCTTTACTCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGAAGCGCCACCGAATATTTGTTGTGCTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTCGATAAGTTAGCTTCACATATTCACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA


>NC_017566|5|4|2467645-2471935|PILER-CR
	TGATCGAGTACAGCGGCATTGCCGAGTTAACG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGATTGCTTTTTTAGCGCCCTTTGAATCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGGTTTACTGCTGGCGTCGGGGTGGCTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAATACATCTTCCGCACCCAACGAGCCGCGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTAGCGGTTTACGCTCACCCGTTGGCACTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAACCCGTTTGTGGCTACAGGGAAATGCTCACGGCGTTTCTAAGCCGCCTGTGCGGCGGTGAACAATCTTAGTCGTGTTTTAGATTTTAATTGCGATTTCTAAGCCGCCTGTGCGGCGGTGAACGGTAAACTAGCTGAACCGCTAGCGGATAACGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTCTTGCGCCCAAGCGGTTTATCGTTAACAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACATCAATCGTAGCTTCATCGCCATTCTTGATTATTTCTAAGCCGCCTGTGCGGCGGTGAACCCAGAATCTACGTTCGACGAAATAGCTAATGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCCACAGGTATCGATTACAGAGTAAGCCTCCAATTTCTAAGCCGCCTGTGCGGCGGTGAACCTTTATCGTCCGTTGTTGACTGTCATAATTGCTTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGAGCGTGGTCGCAATCTTATATGCCAGTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAAATTTTAGGGTCATTCGGTAATGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGCAGGTTAACGAAGTGGTGCTTGAGCCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAATGGCGCGGCCAGAGTTAGGGCGAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAAGTTGAGCGCTCTGTCGCTCAATTAATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATAATGCCCTCGATATTACGCAAAACAAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGCGCACAATGTATATTAATTAGTCTGCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGGCGAATATCGCTCACAATGTGAGTGTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCATGTGGTGAAAAGTGGAAAGACCAACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAATCAGCGCAACAGCGACCAGCACAAAATCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCACTATGGGAAAACGTGCCGCTAACTTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTCAGTGCCTTCACTCTCGGTGTAGTGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCAAAGATGACCACAAACGTTACATTCTATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCACCAAAGAAAGTCTTTTAGAAAAGAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATCAACTTTTTTATCTTCAAGAGAAGGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGTTGAGTATGTGGATAAGAGGTTTTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCTTGCAAAATGCGCTTTATCTAAAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGCACAAATAATAGTCCGCAACTCAGCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTAACCCTTTTGAAGTTGTCTTAGCTCCTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAATATATGAAATTAAGTAGCCGACAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTGTACTCGACCATCTGCCCAGCGTTGCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTTATACGCGCTATCCCCCCATAAATTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCAAACGATCACTGATAAAAAGTTTATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTAATGGAAAAAGGTAACAACTCCATTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATAGGCGATTCTAAGTCCTGAGAATCTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGAGGGGATAGGCGGGGTATCTAACCGCACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGATCTGAACCGCAAGAAGATAATGCAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGCTCAGTGCCAACAAACAGGCGATCTAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAACTGATTATAACTATCGACTGATTTACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGAAAACGCAAAGGGCATGCCGTCAATCAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGATAGTGTGGGCAATTCATTATTAAGAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAATCTATCATGGAAAGCGACAACTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAGAAATGAAATGCAAACTAAAACTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACTAAACTTCCAACTCTAGAGCACGCGCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATGTCAGACATGATGGCTCGCCAGATGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCGAGTGCATAGCGATAGCATCTTGATCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGTCACTAAAACATTACAAACTTCATCTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGATACGAGCATAATGATTCGCAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATCGGCCATTTTTTTACCGTCGGTTTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTCATACAGCTTTAGTTGCCTATATCAATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCCCGTCAATAACTCGATAACTTGTGGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCTATAAAAATCAAGCATTTCAGACAATCGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTGAATGCACTATTACTTTCTATCTTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTTCTAAGGTTCACCAAAAAGCATTCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATGAGCTTGTATCTGCATTAGACGATGACCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACAAATGCAAAGAGTAGCCGTAAGTCAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGCCGATAAGTTTGGCTTAAGTACCGTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGCAGTTTGCCTTTGCAATCCAGTTTGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTAAAAGATATCGATAATGTCAGTGCAATAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTATTTAACATGGCTTTACCTGCGATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTACAGCAATGCCCGAGATACCAAAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAACCTTGGCTATGTGAGTGCTACCCGAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATTCCAAAGACGGACAGTTTCTATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGGTCTATTTGGCTTTATAAACTTGTAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGCGCAATGACCCGCGCTTAGTTGTGTTAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAAAAGCCGGTAGCATGGCGAGCAGGTTATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAACAAAAACTGTACGTTTAATGCAGTTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGATGATTATTCGTCTAGCTATGAGCTAGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAGTTACTAAAACTATAAGAGACTTACTTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCAATTGAGTAAAGCCCTAGCTCTTACACTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCGTTTATTCATGTTAATCACTCCTTCATTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TATCGGTCATTATTTTCACACCCATTCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGACAAGTCTTCATTTAAATCTATCGGCTTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGATTCACGCTTTGATGTGAAATTTCCAAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGCAACAGAAACCTGTTGAGTATTAGTAGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTGATCACTTGCACGGGCGCCCAACTCGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTGTTGATGGTCATGTCTTGCAGGGCGTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGACTTCTCGACTTACTTCTTTACTCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGAAGCGCCACCGAATATTTGTTGTGCTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGTCGATAAGTTAGCTTCACATATTCACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTGGTCGAGAGCATCATAGAGATTGGTGTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_014610666.1\|2455928_2458316_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_017566.1\|WP_011919229.1\|2464107_2464398_+\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|373118
NC_017566.1\|WP_014610670.1\|2464571_2466566_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_017566.1\|WP_011789487.1\|2479995_2481189_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_017566.1\|WP_014610672.1\|2477544_2478522_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_017566.1\|WP_014610671.1\|2474595_2477532_-\|CRISPR-associated-endonuclease-Cas3''	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_017566.1\|WP_025008602.1\|2483703_2483913_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271189
NC_017566.1\|WP_011789488.1\|2481185_2482403_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_017566.1\|WP_014610669.1\|2461535_2463521_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227112
NC_017566.1\|WP_011919227.1\|2472065_2472617_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_017566.1\|WP_006081370.1\|2455628_2455925_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NC_017566.1\|WP_011789473.1\|2454106_2454454_+\|hydrogenase/urease-nickel-incorporation-protein-HypA	unknown	unknown	gnl\|CDD\|376468
NC_017566.1\|WP_011919226.1\|2472625_2473636_-\|hypothetical-protein	cas5	cls000078_cas5_CAS-I-F	unknown
NC_017566.1\|WP_014610667.1\|2458331_2459315_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_017566.1\|WP_011919225.1\|2473644_2474592_-\|hypothetical-protein	cas7f	cls000079_cas7f_CAS-I-F	unknown
NC_017566.1\|WP_014610668.1\|2459837_2461346_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_017566.1\|WP_011789503.1\|2484238_2486233_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_017566.1\|WP_011789474.1\|2454590_2455532_-\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	unknown	unknown	gnl\|CDD\|236355
NC_017566.1\|WP_041411992.1\|2478663_2478858_+\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610665.1\|2453090_2454107_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_014610666.1\|2455928_2458316_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_017566.1\|WP_011919229.1\|2464107_2464398_+\|cytochrome-c3-family-protein	gnl\|CDD\|373118	pfam14537, Cytochrom_c3_2, Cytochrome c3.	9.52049e-10
NC_017566.1\|WP_014610670.1\|2464571_2466566_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	6.42063e-148
NC_017566.1\|WP_011789487.1\|2479995_2481189_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.09394e-61
NC_017566.1\|WP_014610672.1\|2477544_2478522_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.08386e-169
NC_017566.1\|WP_014610671.1\|2474595_2477532_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	4.21242e-36
NC_017566.1\|WP_025008602.1\|2483703_2483913_+\|hypothetical-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	0.000226068
NC_017566.1\|WP_011789488.1\|2481185_2482403_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.89438e-69
NC_017566.1\|WP_014610669.1\|2461535_2463521_+\|TonB-dependent-receptor	gnl\|CDD\|227112	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism].	2.63003e-142
NC_017566.1\|WP_011919227.1\|2472065_2472617_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	7.84552e-76
NC_017566.1\|WP_006081370.1\|2455628_2455925_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	4.31032e-63
NC_017566.1\|WP_011789473.1\|2454106_2454454_+\|hydrogenase/urease-nickel-incorporation-protein-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	2.23434e-39
NC_017566.1\|WP_014610667.1\|2458331_2459315_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_017566.1\|WP_014610668.1\|2459837_2461346_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.35735e-55
NC_017566.1\|WP_011789503.1\|2484238_2486233_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.37156e-56
NC_017566.1\|WP_011789474.1\|2454590_2455532_-\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	0
NC_017566.1\|WP_014610665.1\|2453090_2454107_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	6.60806e-168

>NC_017566.1|WP_014610670.1|2464571_2466566_-|ATP-dependent-DNA-helicase
MTRSRILTTQASVVKSLASNGSVSVSRLSTEVQRAFLQGGVLSTHIQGFSARESQMQMAQGVSEAIASKGNLVIEAGTGVGKTFAYLIPALLSGKQVIISTGSKNLQEQLFFKDLPALTSMFGIEPKLALLKGRNNYLCQWRLDKQMREASHIEARLLDDLLKINQWAGISQDGDIGALTSVPEHSSALPLVVSTKETCLGKRCDFYEVCFTRKARSRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVNYFGQQCSSRTIDDLIQKLLAIYQTELSDTGQIAQFCQRCLTKLSDWHNQLYSAGESDWRLVLGNKLLATASWDLLAELTALQNLLMAHIGRSELLDDIAIQLAELNNKLNVFFHCDNNQAAYSVEFGSRFVVLRISPINIARECQQLFVPETSWIFTSATLQVNRSLAHFAREMGIVDAAQSILDSPFDYPRQAVFCVPRQLGNVANQQQALKQLVDVCVQAIDAAQGRTFILFTSHNMLEQTALALRARTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNVSRQGGDPFTEVSLPQAIIALKQGVGRLIRDEKDRGVLILCDNRIVNRYYGQAFLNSLPPMARTRDLDKALAFLRTIP
>NC_017566.1|WP_011919229.1|2464107_2464398_+|cytochrome-c3-family-protein
MLKKMMLMSVLCFSTSLMAASLADSHSERSDCESCHKDKTPSADYVFENEQCVACHGEMKTLKGDAHTKHDGVLTCTNCHIAHEEKAPADSCKECH
>NC_017566.1|WP_014610669.1|2461535_2463521_+|TonB-dependent-receptor
MFTLQRLCKSRINCPSLPRFAPSVLSCAVAIGLSLSTTLVNAAETTSVNPDMERIVVTATQTKHSELSAPASVSVINRAELDALVIDDLASAVRYLQGVNISEGTSYGRNEISLRGLDSDYTLILINGRRINSREALTSSYGNDFDLSSIPMSAIERIEVVRGPMSSLYGSEALGGVINVILRQPTDDWQTSVGVQYDTPTKGDGGDTTKYNFYTSGALIKDKLLANLIVDSSKRDAWRSDLKPKLDALEDRDEISAIANLQWLIDSNQDLQFDLSYADDERESDWNNYGAILTNYQQAERISSGLTHNGHWNWGDTRLRYYYENVEVTDNSALIAEIGNITQTNHNLDGQSTVLLGDHMLTGGAEYRWTKLENSRNVLGDGVLDDNQSALYLQDEFNLGELNITLGGRVDHHDVYGTEFSPRLYLVYNLSSEWVIKGGGGKAFKAPNMSQSQADYIISSCRGSCTLAGNPELEPETSVNYELSTQYQTTDIGGSITYFHNDVENKIITETWNRVPGAVLTYQNVNEAKITGWELQAWYDLTDDLSLSGNYSKTDAKDKQNGTPFTLTPEDSYNIKLQWQALDGLSTFVAYHYTGEQYLRANVKSDGYGSLDIGANYQINPMFRLKLGVTNLTDSERDNAATDLDYIQKSRSVYAGITASF
>NC_017566.1|WP_014610668.1|2459837_2461346_+|methyl-accepting-chemotaxis-protein
MKEVKFRWIDQYLIHMTLKTKFAILALVPMIMIVGLAVFLNIQFQQTLIDTHFKTLQNSAQQINQITAQLHSKLPDQERQRLQNQLSHGNVNVIALNNADNKAQSIARSGGGIDDSQSQRAISGVNDQNQITIISIDNREIDALLAKDNLLVYALMAALLFVLFLFSYYISTFVGGALYTTVMALKRAASGDLTGRLNFFEVKDEFSILAISIDTLVERQHTLVKQIAESTNKIREVVSSFRSTAQQGQSLAVNQRQHLDSLATAMEEMTAAVKEVARNAEQSSAETQEANQQVSAGGKDIETTVKAIDLLSDEISDASNAVNILNDNASKIDEVVSSINAISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIKTMIESLQSGIRNLTQVMSRTVNQANEGKQHVLQTGKDLEFIAHHSNKVFEMSILIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELQATAGQLDQLMVGLKV
>NC_017566.1|WP_014610667.1|2458331_2459315_-|phenylalanine--tRNA-ligase-subunit-alpha
MQQLTEIVEQALVIIDQASDLKALDDIRVDYLGKKGKITDMMKMMGSLSPEEKPAFGQAVNDAKQAIQQKLTERIDVLKSSELEAKLIAEKIDVTLPGRTQENGGLHPVTRTIERIETFFGELGFSVKQGPEIEDDFHNFDALNISEHHPARADHDTFYFNPKLMLRTQTSGVQIRTMETEKPPLRIISPGRVYRNDYDQTHTPMFHQVEGLLVDEHVNFAELKGILHDFLRNFFEEDLQVRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRSVGIDPEKYSGFAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQFK
>NC_017566.1|WP_014610666.1|2455928_2458316_-|phenylalanine--tRNA-ligase-subunit-beta
MKFSESWLREWVNPSVSREALSHQITMAGLEVDGVDPVAADFNGVVVGEVVECGQHPDADKLRVTKVSVGTGELIDIVCGAPNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLCSYSELGINVESDGIIELPLDAPLGTDLREYLKLDDAVIEVDLTANRADCLGMVGLAREVGVLNRQAVVEPQWQAVMPTIDAKVTINVKAPTACPRYLGRVVKNVNVKAATPLWMQEKLRRSGIRSIDPIVDITNFVLVEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSDTLVIADDARPLALAGVFGGEYSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRFERGVDPEMQHKVIDRATRLVLDICGGEAGPVVEAKSDADLPKPAQILLRRSKLDRILGHHVPDTDVVEILQRLGFSVVASQDSWQVTTATYRFDMAIEEDLIEEVARIYGYDNIPNTAPVAALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGEQAMVLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALHPGQCAEILRNDRVIGHIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSAGDVMKVIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVESVVSALKTEFNASLRD
>NC_017566.1|WP_006081370.1|2455628_2455925_-|integration-host-factor-subunit-alpha
MALTKAEMAEHLFETLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANTGK
>NC_017566.1|WP_011789474.1|2454590_2455532_-|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase
MSRQPKYFDRRFTLALLHPKYWGSWLAIGLLVIFGLMPAWLRDPIARLLAKWVIPIAKKPIRVARANLKACFPEKSAAEIEALIKDNVEHFVLVLLSQGELLVRSKAHLRRRVSLFGFEHVKKAQAAGQPIIFIMPHVWPIDYAGLRINCEMPLVTMAKAHKNGLFNWFSNRVRSSCGGHVYMREAGIRALLAELKQNNSFFYLPDEDLGPEQSVFTPFLGTVKATLPVVGRLAQAGNAQVLPVKIGYNQAQYRFELTVMPAIAPEDMQGKENEALALNKVVEQVILAYPEQYMWFLRLLKTRPEGEASIYGN
>NC_017566.1|WP_011789473.1|2454106_2454454_+|hydrogenase/urease-nickel-incorporation-protein-HypA
MHEYSIVSALIEQCEQHALANQANKITRVEIKLGVMSGVEPALLQTAFDTFKLDGICKEAQLNMQLQPLVIECLDCQTSSELNERSIVCPACQSYRTRVLDGEDMLLMQLEMEQE
>NC_017566.1|WP_014610665.1|2453090_2454107_+|hydrogenase-expression/formation-protein-HypE
MADSPKDKSIQLSHGGGGKEMNKLIRELFFAEFDNPILRNEEDAAKLDLHGANAFTTDSFTVSPLFFAGGDIGKLAIAGTVNDLAMMGAEPQYLSCSVIIEEGFSINDLTTIVRSMAKELKQSGARIVCGDTKVVPKGCADGLFINTSGIGRILRPNISAANLTAGDTIIVSRDIGCHGAAILMAREGLVLESSLQSDCATLWPVVEQLIAANIPIHAMRDATRGGLSAVLNEWAVASNVGITVNEASIPVCDEVKGLCELYGFEAMDLANEGTFVLAVPQEIALGALEIMQRFGHCEQAAIIGTVTDETAGKVILKTPWNTKRYLDLPQGELLPRIC
>NC_017566.1|WP_011919227.1|2472065_2472617_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNSYIDIRLKPDAEMREAELSSKVFTKFHKALVTLNSHKIGISFPQMKLSLGQLFRIHGDASLLHDLQGLDWLGPLAGYCQVTAVSAVPDHVQYRIVSVKRSNLSKAKLKRLIARGSIDKDGEKRYKVKMLGQGFDNPYLDLFSSSTGQVYRKFFEFSDIQAHPLDGEFDSYGLSKTATVPWF
>NC_017566.1|WP_011919226.1|2472625_2473636_-|hypothetical-protein
MKIIIEYDSCWRNAFLGGSNNEPVPKKGREFLGSMTSLKKEGNFKVCENTLDTVMGVLNRLIGDQRKLYQARSKMYESAYYFEALEDKVSFIDKPQLTNEISFIRNMNGSTDQNAFTGMIKVSDPVFTSEYSQQFWGVLALDFTQLCDFIIKQSQVVGSIELNPLSIINRLESLNQEKALENSDDLAQVLKVLNEYFPDIEYLNNKGLITPISIYCSALYLQLARLETSFNMTTAKTKAGGISGISKRGFTKKDFMDRYTTGPKKTIWGNPFIKKEKIKGQGEVTSMMTKASGQLEISIDVDRDKAQEIKILIENAGVSSFYLGKKGLAYVSNIKL
>NC_017566.1|WP_011919225.1|2473644_2474592_-|hypothetical-protein
MQKVTGIKSVDFKIKALGHGVVNWNGPTTLTGDDGKTVDNHTLPKLRGYTNLTGKVKDETGYKYKKQATDINFKETPLYISQNCIRHHLFREQAFDLHYASDKNLKNVLASITGLIRGYVVPSSQCKRTSPLLLEDFVDQLGNGNFEQYGQAGARDSTSFFSKTTFGDTEYISYGSISIEQLQFISLDKKFDRAAMVIKEGEGEVIAAELQNYIQSLNPSLNPQAIFHSNYVRRGTIFEEGECGILLNDDAVKALVAETLERLANLSIRQAKGYMYVDDITVDYNDSHKMMRIKRDESEIINEQHAPFAQYFYAK
>NC_017566.1|WP_014610671.1|2474595_2477532_-|CRISPR-associated-endonuclease-Cas3''
MMVTFISQCEKNALKKTRRVLDAFANRIGDNTWQTLITEDGLLTVKKMLRQTASKSTAVSCHWIRSRARSQLLWVVGNRLKFNEQGIVPVNSTVKEVFMDVVTNKPKQGVLYANTQLQPLSEHLFAVGFVAELLHRQLFPENTQFSIANFIAGCLHDLGKIDPKFQEWVTNPKKRDFIAEDGQHIDDAKFSFDKHPRHNEVSLLLYQLLDSTELKLLNPSNKRSVKHALYWHHAKPFRKEKNGFDTYKDISKKLVANQKEIGLSDIVGQAQTLLRQVIGIDKKYRELTNSLLEKAFLAEVEQDLEANLPDAPALPSYKEYEFEESVSANSTNVKLNALNNIVRACLISADRTVSALSAAELHTAIFERQLDEIVTELLEVETTLSSDIDTCLNAFFPTSERSQKQRDIAKQLTTAEDVAVLAGAAGCGKTKIALEWAKLQGVKRIIWVCPRVQVCQGLFYELTSEQYLPNSTIEINTGEFKFHNQWDNPIPDDENFSGDIVITTIDQILGSVISHTKANTLIDFLNVHVVFDEFHEYVNMPAFNLLFAELIAAKKMQKDQAKTLLVSATPHYVFVEDLLGIHPDDIKIMPSFNPSQYQLDFKIFDDTNLSNINPLFAQQSGCTFVISNMALTAQNSFIVNQHNENAVLLHSKFIKSDKRKWFGEVYEAYKRDGTRKYEVLRSGPIVQASLNISCDYMVAEITSAEDCLQRLGRLDRFGENSDVNTYTLAVPESIANGKGKSPAAGFLSKMYALSSVRAWYQFLHSELADKTFTLPEIYQLYFAFHHTERNRGFIASDLVAALKNSVQQINAKVVDPITVPPKNNKDKKRTKISKGSLRGDNRFVQLAVVDLSQAEPKYIEAYAYSIPLDDDSNIDNLTYATKAICGYDQSDKDLLSHMFKKHHNIMGGTGKAFTDKILLNEARDPESPIYLSYTTNDLLQVGGESARHPHAIYYAVCDKQAIGAMSIKQINQTTEDEE
>NC_017566.1|WP_014610672.1|2477544_2478522_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEYCRVMQKDGRVLYLTEAKQDNQYFNIPIANTTVLLLGNGTSITQAAMRMLAQAGGLVGFCGGGGTPLYMTCEVEWLTPQSEYRPTEYLHGWMQFWFDDEKRLLAAKTFQQARIQFIEQVWQRDRELKTEGFIFKDPAIQAALETFHARTEAATKQSDLLLTEAQLTKVLYKHAANNTQLKDFTRQHQSTDIANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKEKASEQEFRQQVLQAFTDHNALDFMFNTVKGIALQDYSAEQIAAQGL
>NC_017566.1|WP_041411992.1|2478663_2478858_+|hypothetical-protein
MNIPNTVVTNLPNLNAGQVLDLSSADYAKHVMLLNGTMQPQGRAHQEANMSTIARTTSRTRALR
>NC_017566.1|WP_011789487.1|2479995_2481189_+|serine-hydrolase
MTTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRESARPMAVDTVFRLASVSKPIVSAAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITVRQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQENLKRIASVSLLYEPGTAWGYSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQLAEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPKELVAEMARDQTGGLELPNSPGFGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDRAQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR
>NC_017566.1|WP_011789488.1|2481185_2482403_+|MFS-transporter
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGSLLMAIPLMTITQGVRRRPLLLAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWALLAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLGNLVGWRVCFAMMSLLALMLIVWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGMAERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYCAVAAWGLAFGGAATLFQTGLAKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVSSFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPKQQTEV
>NC_017566.1|WP_025008602.1|2483703_2483913_+|hypothetical-protein
MAAPLEWVARQLGHSDTTMIKKHYGKWIPKDSQRMVSRISEIMGFDADINGQENGNSAPKMPQNNKGNQ
>NC_017566.1|WP_011789503.1|2484238_2486233_-|methyl-accepting-chemotaxis-protein
MKWQWIGNLSLKQKLLMVVLPPLIACFLYGALFLTEKFKYRQDLQLVVQLSELAVTNSNLVHELQKERGMSAGFIGSGGKAFAGKIPEQRRLTDSQLKLYQSFIADNALPELFAPKLRELNTQLGRLAGIRSQTDSLSISVAEEVAYYTDLNKILLAIVDETAKAGANQEIAIKAAAFSAYLQMKERAGIERAVLSSTFGQYGFKPQVYARFITLVSEQNSYLERFQALATPELVQAVSRIQNSNEVREVEALRQIALEQDNQKIQQQSPEEWFTKSTARIDSLRDFEQQVSTDLLKTTHKRLQSANEHMFFVLATLTLVLTLVLIFSLSVIRYLHDSVHHLYSTITQARKNYDLSVRLTHSSSDEFGELAIAFNDMMSDFENVILQVRASGAKLQQAVKQMDLCTHAMEQDVMEGHSEAEQVASAMTEMSATVAEIASNAVQASEASSAANQEAKAGNIEVGRTSNAIKALADDISGASQAINELDREIHGIVVVLDVISSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAQRSQTSTADIKNMTDRLKSGASIAVKAMERGLTQANISVQEAEQAGIELKRVVEQVDIIDRMNEQIATATHEQSAVSEDVNRNALKISEIYLNTQRISDELRELTKALTFDADLMSKEVHKFTVN

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Crispr_ID: NC_017566_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017566_6

3065886-3066109

Orphan

Consensus_repeat	Method
CAGGCACGCTACCG-ATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT	PILER-CR

2 spacers

The CRISPR arrays of NC_017566_6

>merge|NC_017566|6|3065886-3066109|PILER-CR
CAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTTTTCATTCGATGCCTTTCAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTTTTCATTCGATGCCTTTCAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT

>NC_017566|6|5|3065886-3066109|PILER-CR
CAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT	TTCATTCGATGCCTTT
CAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT	TTCATTCGATGCCTTT
CAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017566.1\|WP_014610961.1\|3057364_3057910_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NC_017566.1\|WP_014610960.1\|3056372_3057368_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NC_017566.1\|WP_011919590.1\|3067695_3069201_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NC_017566.1\|WP_014610969.1\|3076043_3077036_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NC_017566.1\|WP_014610968.1\|3070050_3071181_-\|response-regulator	unknown	unknown	gnl\|CDD\|381107
NC_017566.1\|WP_014610962.1\|3057984_3058860_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NC_017566.1\|WP_041412073.1\|3069637_3069940_+\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610957.1\|3052586_3053849_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240532
NC_017566.1\|WP_014610966.1\|3062969_3065456_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|224512
NC_017566.1\|WP_011919592.1\|3071300_3072083_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_017566.1\|WP_011788797.1\|3074972_3075371_-\|DUF2802-domain-containing-protein	unknown	unknown	gnl\|CDD\|378523
NC_017566.1\|WP_011919594.1\|3074273_3074585_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225166
NC_017566.1\|WP_011788796.1\|3075541_3076036_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NC_017566.1\|WP_014610963.1\|3059096_3059963_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_017566.1\|WP_014610964.1\|3060052_3061111_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NC_017566.1\|WP_014610965.1\|3061318_3062308_-\|LPS-biosynthesis-protein	unknown	unknown	gnl\|CDD\|182422
NC_017566.1\|WP_011788799.1\|3072313_3074233_+\|hypothetical-protein	unknown	unknown	unknown
NC_017566.1\|WP_014610958.1\|3053849_3055040_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|223515
NC_017566.1\|WP_014610967.1\|3066715_3067222_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|131010
NC_017566.1\|WP_041412367.1\|3055107_3056355_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486

Protein	Function_ID	Function_description	E-value
NC_017566.1\|WP_014610961.1\|3057364_3057910_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.4962e-106
NC_017566.1\|WP_014610960.1\|3056372_3057368_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	1.29314e-101
NC_017566.1\|WP_011919590.1\|3067695_3069201_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.3482e-148
NC_017566.1\|WP_014610969.1\|3076043_3077036_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	1.27962e-15
NC_017566.1\|WP_014610968.1\|3070050_3071181_-\|response-regulator	gnl\|CDD\|381107	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains. Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.8863e-54
NC_017566.1\|WP_014610962.1\|3057984_3058860_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	6.1524e-134
NC_017566.1\|WP_014610957.1\|3052586_3053849_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.21601e-14
NC_017566.1\|WP_014610966.1\|3062969_3065456_-\|sugar-transporter	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	6.1343e-25
NC_017566.1\|WP_011919592.1\|3071300_3072083_-\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	2.7257e-92
NC_017566.1\|WP_011788797.1\|3074972_3075371_-\|DUF2802-domain-containing-protein	gnl\|CDD\|378523	pfam10975, DUF2802, Protein of unknown function (DUF2802). This bacterial family of proteins has no known function.	4.73525e-22
NC_017566.1\|WP_011919594.1\|3074273_3074585_+\|hypothetical-protein	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	6.42797e-26
NC_017566.1\|WP_011788796.1\|3075541_3076036_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	2.79607e-52
NC_017566.1\|WP_014610963.1\|3059096_3059963_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_017566.1\|WP_014610964.1\|3060052_3061111_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NC_017566.1\|WP_014610965.1\|3061318_3062308_-\|LPS-biosynthesis-protein	gnl\|CDD\|182422	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.	4.4582e-14
NC_017566.1\|WP_014610958.1\|3053849_3055040_-\|glycosyltransferase	gnl\|CDD\|223515	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].	0.000208085
NC_017566.1\|WP_014610967.1\|3066715_3067222_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|131010	TIGR01955, Transcriptional_activator_rfaH., transcription elongation factor/antiterminator RfaH. This model represents the transcription elongation factor/antiterminator, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes. [Transcription, Transcription factors].	1.29766e-76
NC_017566.1\|WP_041412367.1\|3055107_3056355_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0

>NC_017566.1|WP_014610966.1|3062969_3065456_-|sugar-transporter
MLQQIKKFIIVGLSAMILMGVQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGASATSTVIENPAVVTPRAATNNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQFTLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTVSVMGEVRRPAIYELKNNETMADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTENSGLSIQAKNGDLLNVRSASSRIDNAITLSGAVIRPGKYQWTNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKPIIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVTVEHMQLSLDRVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVKFPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIKEKEQLEIAKLADELRREIAAKALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPATNQTVSVMGQVQHPSTHRYKQGITFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFWFNGGSVIEPGDTIVVPLDTEYKDNLTLWTQVTGIIFNTAVAVSAIAGI
>NC_017566.1|WP_014610965.1|3061318_3062308_-|LPS-biosynthesis-protein
MNTQITQNPNTYQSDARFPQMQDDEIDLRELFSVIWQGKWRIIGITAVFAIASVGLALYLPNIYKSEALLAPASEEQGGGLSALASQFGGLASLAGVNLGGKGGTDKTQLAIEVLKSRQFTSEFIQKHNILADLMAAKKWDRDADKIIYDPELYNEQTNTWVRDVEPPVKPEPSMQEAYKEFSKIIAVNKDKETAMVTVSIEHLSPTVAQQWVTWLIQDINKVMKDRDVAEAHRSTDFLNKQIALTNVADIKTVLYKLIEEQAKTIMFAEVRDEYVFKTIDPALAPEEKAKPKRALICVLGTMLGGMLGVMLVLVRHFMRKEQSLESRI
>NC_017566.1|WP_014610964.1|3060052_3061111_-|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVVRHIINKTQDCVINVDKLTYAGNLESLVSVAASERYAFEQVDICDRAELDRVFSQHRPDAVMHLAAESHVDRSITGPADFIQTNIVGTYTLLEAARHYWMKLDAERKVAFRFHHISTDEVYGDLPHPDEQEGQVVKQELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPFHFPEKLIPLVIINALEGKPLPIYGKGDQIRDWLYVEDHARALYIVVTEGKIGETYNIGGHNEKQNLEVVQTICRILDSLVPKATPYAEQITYVTDRLGHDRRYAIDASKMSRELNWQPQETFETGLRKTVEWYLANQEWCQHVQDGTY
>NC_017566.1|WP_014610963.1|3059096_3059963_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPISVLMLAGIRDILIITTPEDQSSFQRLLGDGSDFSIRLQYAVQPSPDGLAQAFLIGEEFIGNSNVCLVLGDNIFYGQSFSKTLKNAACRPTGATVFGYQVKDPERFGVVEFDAEMKAISIEEKPIKPKSNYAVTGLYFYDNKVVELAKKVKPSHRGELEITTLNEMYLKAGELNVELFGRGFAWLDTGTHESLHEASSFVQTIEHVQGLKVACLEEIAYRNGWLTVGELKELAKPMLKNDYGQYLNQLAHN
>NC_017566.1|WP_014610962.1|3057984_3058860_-|dTDP-4-dehydrorhamnose-reductase
MKILITGSNGQVGRSLVKQLNQMPDIEFLAMDREQLDITDCEAVNKLVNEFKPNVIINAAAHTAVDKAEQEVELSYAINRDGPQFLAKAANSVGATILHISTDYVFAGDKQGEYSEDDTVAPQSVYGQSKLAGELAVAAANPRHIILRTAWVFCETGNNFVKTMLRLAQSRDEFGVVADQFGGPTYAGDIAYALIAMAKVLHAGNNNYGVYHFAGLPHVNWHQFAVDIFKQANAQGILHKELRVNAITTAQYPTTAKRPANSKLNCYKIGQSFGINPSDWQAALNNLKTYV
>NC_017566.1|WP_014610961.1|3057364_3057910_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKIIDTKIPDIKIIEPTVFGDERGFFMETWNQKQFEVLVTGKPTTFVQDNHSKSKKGILRGLHYQTENTQGKLVRVVYGEVFDVAVDIRKNSSTFGQWVGEFLSADNKRQLWIPEGFAHGFYVTSDEAEFVYKCTNYYKLESEQSIRWNDNTLGIDWPIIGKPVLSNKDKNACSFKEAKFL
>NC_017566.1|WP_014610960.1|3056372_3057368_-|UDP-N-acetylmuramate-dehydrogenase
MIERFNVQMKKYNTLKLASVATKFFEIFDENELYELFDKKIFVKDCYRVLGEGSNLWISSKEIPVVIKLNLKGKLIDRQKEYTLVSAKAGENWSDFVEMLISYNIGGFESLVDIPGTVGAAPIQNIGAYGVEVCECISHVKVYDTKINDFRNISNKDCFFGYRDSLFKADKTLIVTEVFFEFKNKYLPNITNKEILKEMEGGEMTLQSILESVRKVRRRKLPDPNIFPNSGSFFKNPILNKKSLNKIRSVNSEVVVYEVKDGYKVSAAWLIEFSGWKGLKINDVGMSSLHSLVLVNYSESNLVSIDEFVEHLMEDVFTKFGVLLEVEPVRW
>NC_017566.1|WP_041412367.1|3055107_3056355_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MQKLEIVGGNKLDGSIPISGAKNAALPLMCAALLVNGKLKLDNVPSLKDVYTLLDILTSLGAKSKFDNNSLEIDCSELNSTFAAYELVKTMRASILVLGPLLARFGKAKVSLPGGCAIGSRPVDQHLKALKALGAEIYIEDGYVIAEGSLVGSEVYFDMPTVGGTENIVLAATLARGRTVINNAAMEPEIVDLCKCLKSMGAQISGEGTSCIIIDGVDKLSPTQHVVTPDRIEAGTFIIAAAITGSNLTLTNVKLMHLKSIIDKLTLAGVTLKEVEDGVFVQASSKLTSVDIQTQPHPGFPTDMQAQFTVLNCVAEGTATVEENIFENRFMHVAELNRMNASISVHGNHAKVTGNRNLRGATVMATDLRASASLVIAGLVAEGTTVVDRIYHLDRGYESIEKKLSSVGANIKRIS
>NC_017566.1|WP_014610958.1|3053849_3055040_-|glycosyltransferase
MHKEATSIIQSHIAFVIGTFGHGRGGHYWDVKTISESINSFESVIVFNIGCKPSPVLERSNIKVINVPLNFIEAVTVVKKYVVDLNVKTIFCIDIRVSLIPALVSNFTRTPMVLIKPGGPNPSKRYPVTKDFIVYSLENYLYFKNINDFKKTTIHFLPNRSCRVNVNKELVANIRDGRNEIFTFVQIIRITKEYAKNLYQSIDMIRKLNATNNYRVSLNIIGVVQDEKLFKDLCNYSKDQSVSFYTSGEYTNCASELLLSGDAVIANGRSVMEAASLGLPILISAKNTTLPVLLDKDNFERAFKVNFSPRFEVELSRDGEQCHLNHIKKLINDNGYLSEVRSHSLQCYQRYFNVESVVDRYIDISNCQKFTKISVVSLFLMIKAYVYSVAKLWLGN
>NC_017566.1|WP_014610957.1|3052586_3053849_-|oligosaccharide-flippase-family-protein
MSQSSVRKSLFFNVSSNLFSQLVSIIFIPILSRLYAPEQFGEVAFFLGISSCIIAVSSLRLSITIPIAENNNTKGIAFALSSVFIFGTTALIVMITQYTPFFFIIGIDSVSYLIAPYVLIVSLNGVLVNILISNGNYNFIGGSKLVTAVFLNLFRLVFFSFGLSDGLVYSLLISEVAAFFMLLLGSGKSLALFVKSLEWSVSPYLRFLYDFKDYPKYQVISQLVLIGTQYAPVFVLSATFDASFVGLYAMANNLVNLPVNSIGLALSQIYLGEYIKVENRNKILPHSIWIVLIFIVCSLPFLFIMGVWGTELTRFFLGEQWVDSAPIISLLIFLGVSKLCMSIISQSLNIFRAQRLQLAINILFFMLSYMSLYFAIQLGFDFYDTILVYTVSGSGALFFGIFLVLFNIRENLSNECCVHR
>NC_017566.1|WP_014610967.1|3066715_3067222_-|transcription/translation-regulatory-transformer-protein-RfaH
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFIKFDPSQTSVRQVHSTRGVNRIINCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESELKMGEKIRFKDGPFVDLEGVFQEKCPNKRCHVLFSLMGQVNTITVPEESLERVCV
>NC_017566.1|WP_011919590.1|3067695_3069201_+|peptide-MFS-transporter
MSVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVGKQGGGGLGWSQADALSLYGTFTALVYLTPLIGGWLADNFLGQRKAIYFGGALMAAGQFMLAAPHAWFPGVETTLFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINLGAALSGFVVAWAYTSFGHTEIINDQEVFVNNWQAGFFCAGIGMLLSLVIQFLFAQKLLGDIGTVPAARLERERQAQLGNVRKEPLTKVERDRIKVIMVLGLFTIIFWAGFEQAGGLMNLFTNEFTDRYIGTWEVPTTYFQSLNAIFIVLFAPVVASIWIRLGKNEPNSPVKFALGLFLLAIGFLFMIGAVVEMGGNPNAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGAWFLFIAMANKVAGVVGSFIGHGGGKEEQLANAMSIFAGIAITATFSAVVLYFMADKLVDWMHGAETKHSSEAQALEDEIAVTAEHEAIKR
>NC_017566.1|WP_041412073.1|3069637_3069940_+|hypothetical-protein
MRGSSFGFWLLNHTPLKHQKSALIDSRLRRNDSFKLSSSRMRGSSFGFWLLNHPALKHQKRSPIDSRLRGNDEGIGITKEYENDDGVQITKECKMTRRFE
>NC_017566.1|WP_014610968.1|3070050_3071181_-|response-regulator
MVLNGVSILLVEDDPVFRQIVATFLSGRGADVAQASDGEQGLSVFKQQRFDIVLADLSMPKLGGLDMLKEMTKLEPLIPSIVISGNNVMADVVEALRIGASDYLVKPVSDLFIIEQAIRQALNKILGDEPIQAEIDALSRQELSDNLALLEQSVEAAKQVQQQLFPASNISYPVAKVDYSLFKDSDISSYFIDSTMVGNDHLIMYMAHLYPEDNRAAFACVLLRSFVNQKLKNYRSGQSKTIIEPFNMLSYLNERLVNSGLDITVDIIYISIELTKYRAAIAQAGRGLRCYLRNDQGLSPLALSDSLQLGLLDWGKPSIQFRTILPQEQLCIATSEPIHKQNLLENKFKGLVYDRHIPAGGFMQLSLPIERSQAHG
>NC_017566.1|WP_011919592.1|3071300_3072083_-|VacJ-family-lipoprotein
MKLKWIGLSLGFVLLPQAYGAEVSVPDTTSQDITAVTITYDDPRDPFEGFNRAMWDFNYLYLDKYLYRPVAHGYNDYIPRPAKTGINNFVQNLEEPSSLVNNVLQGKWGWAANAGGRFTVNSTIGLLGVFDVADMMGMPRKQDAFNEVLGYYGVPNGPYFMAPFAGPYVVRELATDWVDGLYFPLSELTMWQSVVKWGLKSLHARASAIDQERLVDNALDPYAFVKDAYLQHMDYKVYDGNVPQKQEDDELLDQYMQELD
>NC_017566.1|WP_011788799.1|3072313_3074233_+|hypothetical-protein
MESIPVINNANPQQPAPAYQNDASNVSARPIPVEVLVSPKGDSIILNGTEYNLKLVDAQQRQALINANRFLLTQTTAEPAANTTPNAAITTASQPAQLTALGTALTLKLPEAIAQLAQQNGISLERLFSLAGRPQGYPLPDVTITHKEFQFSNGTVIAQDAGTRLSAGEYQAKIALSQGRPILVLTPIVSKLEILIGASINETKIPIIDKQAANVVIAKTEPAQIYASFLRKLESLIPQPEMRSSNATTINISPSLSAQSTSVAASSMTPTLDATNLGQATTKANANNTQANAQTGQSITAPRLPLGSLPPTTEQNITNTATNISLQNSSLIAATISQSAHVTNNLGQAKPDVQQIDSSSDGDINVNDVLQKAFNKAGALPSDQLVLRSNNNLATELLRHLPHINPQPLGQLSDPDSLKAEILGLATLNLAAQQLSHTSSFMNAGAITSLFQLLLGFRAKTTSALSQKLANYLEQLQARTGFSNNQLSQLSKAGGLESMGQLATSLHLYQQASGENNGNIVWFFALPYSINQRHEQLEGKFEQENDADEQQKHNGWHLQLKFNLAQGPLLISARYHQQLLEIQFKGNNQTLLNKVDNFLAPLSQKLSQLGFTTSELSTQIAPVPATLLPGDHFLVKTKA
>NC_017566.1|WP_011919594.1|3074273_3074585_+|hypothetical-protein
MTTEDNKTKQAVALSYDGKHAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFLRLLELGEEIPKELYLLIAELIAFVYMLDGKFPEQWNNMHQKIVEKA
>NC_017566.1|WP_011788797.1|3074972_3075371_-|DUF2802-domain-containing-protein
MGDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRSGTIGVGRRVIELEKRLHQQSERIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPKAEAELLIRLHRK
>NC_017566.1|WP_011788796.1|3075541_3076036_-|chemotaxis-protein-CheW
MKDTRNVAAVAASKDDVVLQWVTFKLDNETYGINVMQVQEVLRYTEIAPVPGAPYYVLGIINLRGNVVTVIDTRSRFGLQSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTEESAKFIQGVSNRDNELLILVDLDKLLSDEEWAELTQL
>NC_017566.1|WP_014610969.1|3076043_3077036_-|chemotaxis-protein-CheW
MSKSVDETVFDFFELLLHENDSSITGISKPPSHGDKSLQREAIGNEVTSLDDAILAERASVRLHQTITVTPEVQFAKVKAPSPNVVLSEVAPKVDKQSLEKLLAPVLKTEVKTEPKIIEELIQPEIVSEGKPVDDTEQPISFAAEEPLAVGREEAILVNKPETQLGITPPSITKDLQEVLDDEFQVLFFKVAGLTLAVPLVSLGGIVKVERINHIIGRPSWFLGVQSHREEQLNIVDTCAWVMPEKYTDKLAQSVNYQYLVLLEGSNWGLTCESLVNAVKINKSQVNWRSKAGKRPWLAGVVKEQMCGILHVQALVEMLDAGLGCQDSIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_017566_1	1.11\|731705\|32\|NC_017566\|CRISPRCasFinder,CRT	731705-731736	32	NC_017566.1	4208726-4208757	1.0
NC_017566_1	1.11\|731705\|32\|NC_017566\|CRISPRCasFinder,CRT	731705-731736	32	NC_017566.1	4424705-4424736	1.0
NC_017566_1	1.38\|731707\|32\|NC_017566\|PILER-CR	731707-731738	32	NC_017566.1	4208726-4208757	1.0
NC_017566_1	1.38\|731707\|32\|NC_017566\|PILER-CR	731707-731738	32	NC_017566.1	4424705-4424736	1.0
NC_017566_6	6.1\|3065950\|16\|NC_017566\|PILER-CR	3065950-3065965	16	NC_017566.1	3066110-3066125	1.0
NC_017566_6	6.2\|3066030\|16\|NC_017566\|PILER-CR	3066030-3066045	16	NC_017566.1	3066110-3066125	1.0

1. spacer 1.11|731705|32|NC_017566|CRISPRCasFinder,CRT matches to position: 4208726-4208757, mismatch: 0, identity: 1.0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
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2. spacer 1.11|731705|32|NC_017566|CRISPRCasFinder,CRT matches to position: 4424705-4424736, mismatch: 0, identity: 1.0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
********************************

3. spacer 1.38|731707|32|NC_017566|PILER-CR matches to position: 4208726-4208757, mismatch: 0, identity: 1.0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
********************************

4. spacer 1.38|731707|32|NC_017566|PILER-CR matches to position: 4424705-4424736, mismatch: 0, identity: 1.0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
********************************

5. spacer 6.1|3065950|16|NC_017566|PILER-CR matches to position: 3066110-3066125, mismatch: 0, identity: 1.0

ttcattcgatgccttt	CRISPR spacer
ttcattcgatgccttt	Protospacer
****************

6. spacer 6.2|3066030|16|NC_017566|PILER-CR matches to position: 3066110-3066125, mismatch: 0, identity: 1.0

ttcattcgatgccttt	CRISPR spacer
ttcattcgatgccttt	Protospacer
****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017566_5	5.66\|2470735\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470735-2470766	32	NZ_CP035695	Vibrio furnissii strain 2419-04 plasmid unnamed1	11871-11902	5	0.844
NC_017566_5	5.66\|2470735\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470735-2470766	32	MT662115	Vibrio phage ValB1MD-2, complete genome	34797-34828	5	0.844
NC_017566_5	5.66\|2470735\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470735-2470766	32	HG803181	Vibrio phage PV94 complete genome	1904-1935	5	0.844
NC_017566_1	1.8\|731525\|32\|NC_017566\|CRISPRCasFinder,CRT	731525-731556	32	MN693542	Marine virus AFVG_25M165, complete genome	36212-36243	6	0.812
NC_017566_1	1.8\|731525\|32\|NC_017566\|CRISPRCasFinder,CRT	731525-731556	32	MN693056	Marine virus AFVG_25M10, complete genome	36739-36770	6	0.812
NC_017566_1	1.8\|731525\|32\|NC_017566\|CRISPRCasFinder,CRT	731525-731556	32	MN693152	Marine virus AFVG_25M11, complete genome	22735-22766	6	0.812
NC_017566_1	1.8\|731525\|32\|NC_017566\|CRISPRCasFinder,CRT	731525-731556	32	MN693020	Marine virus AFVG_117M64, complete genome	23018-23049	6	0.812
NC_017566_1	1.35\|731527\|32\|NC_017566\|PILER-CR	731527-731558	32	MN693542	Marine virus AFVG_25M165, complete genome	36212-36243	6	0.812
NC_017566_1	1.35\|731527\|32\|NC_017566\|PILER-CR	731527-731558	32	MN693056	Marine virus AFVG_25M10, complete genome	36739-36770	6	0.812
NC_017566_1	1.35\|731527\|32\|NC_017566\|PILER-CR	731527-731558	32	MN693152	Marine virus AFVG_25M11, complete genome	22735-22766	6	0.812
NC_017566_1	1.35\|731527\|32\|NC_017566\|PILER-CR	731527-731558	32	MN693020	Marine virus AFVG_117M64, complete genome	23018-23049	6	0.812
NC_017566_2	2.9\|1971788\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971788-1971819	32	NZ_KY000056	Agrobacterium vitis strain Tun201 plasmid pTi_Tun201, complete sequence	116869-116900	6	0.812
NC_017566_2	2.16\|1972208\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972208-1972239	32	MG696114	Proteus phage phiP4-3, complete genome	128077-128108	6	0.812
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	NC_001884	Bacillus phage SPBc2, complete genome	97789-97820	6	0.812
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	AF020713	Bacteriophage SPBc2 complete genome	97789-97820	6	0.812
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	MT601274	Bacillus phage vB_BsuS-Goe13, complete genome	88562-88593	6	0.812
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	MT601273	Bacillus phage vB_BsuS-Goe12, complete genome	88316-88347	6	0.812
NC_017566_5	5.51\|2469834\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469834-2469865	32	KY421186	Flavobacterium phage FL-1, complete genome	31641-31672	6	0.812
NC_017566_5	5.66\|2470735\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470735-2470766	32	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	41783-41814	6	0.812
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	AP014122	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4-MedDCM-OCT-S43-C68, * SEQUENCING IN PROGRESS *	23684-23715	6	0.812
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	AP014140	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S37-C62, * SEQUENCING IN PROGRESS *	9903-9934	6	0.812
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	AP014141	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S46-C72, * SEQUENCING IN PROGRESS *	23699-23730	6	0.812
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	NC_029100	Pseudoalteromonas phage Pq0, complete genome	25921-25952	6	0.812
NC_017566_5	5.82\|2471696\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471696-2471727	32	KC292027	Halovirus HCTV-5, complete genome	94012-94043	6	0.812
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MK448653	Streptococcus satellite phage Javan77, complete genome	5378-5409	7	0.781
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MK448655	Streptococcus satellite phage Javan80, complete genome	5378-5409	7	0.781
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MK448606	Streptococcus satellite phage Javan72, complete genome	5378-5409	7	0.781
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MN794232	Vibrio phage VH1_2019, complete genome	106178-106209	7	0.781
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MK448419	Streptococcus satellite phage Javan307, complete genome	2992-3023	7	0.781
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MK448653	Streptococcus satellite phage Javan77, complete genome	5378-5409	7	0.781
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MK448655	Streptococcus satellite phage Javan80, complete genome	5378-5409	7	0.781
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MK448606	Streptococcus satellite phage Javan72, complete genome	5378-5409	7	0.781
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MN794232	Vibrio phage VH1_2019, complete genome	106178-106209	7	0.781
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MK448419	Streptococcus satellite phage Javan307, complete genome	2992-3023	7	0.781
NC_017566_5	5.2\|2466893\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2466893-2466924	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1785699-1785730	7	0.781
NC_017566_5	5.4\|2467013\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467013-2467044	32	JF270478	Psychrobacter phage Psymv2, complete genome	27952-27983	7	0.781
NC_017566_5	5.25\|2468273\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468273-2468304	32	MG592626	Vibrio phage 1.262.O._10N.286.51.A9, partial genome	10437-10468	7	0.781
NC_017566_5	5.42\|2469294\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469294-2469325	32	MG592429	Vibrio phage 1.047.O._10N.286.55.F2, partial genome	30367-30398	7	0.781
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	MK613349	Roseobacter phage CRP-7, complete genome	3692-3723	7	0.781
NC_017566_5	5.69\|2470915\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470915-2470946	32	MK972713	Salmonella phage SW5, complete genome	14144-14175	7	0.781
NC_017566_5	5.69\|2470915\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470915-2470946	32	MK972714	Salmonella phage SW3, complete genome	14366-14397	7	0.781
NC_017566_5	5.69\|2470915\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470915-2470946	32	NC_049460	Salmonella phage SI7, complete genome	4586-4617	7	0.781
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NC_018454	Cronobacter phage phiES15, complete genome	7500-7531	8	0.75
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	JQ780327	Cronobacter phage phiES15, complete sequence	7500-7531	8	0.75
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	JN849462	Vibriophage phi-pp2, complete genome	105709-105740	8	0.75
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MT135024	Vibrio phage V05, complete genome	70655-70686	8	0.75
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MT135026	Vibrio phage V09, complete genome	238651-238682	8	0.75
NC_017566_1	1.7\|731465\|32\|NC_017566\|CRISPRCasFinder,CRT	731465-731496	32	MT135025	Vibrio phage V07, complete genome	153167-153198	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_KR052811	Lactobacillus crispatus strain L6 plasmid pLc17, complete sequence	1577-1608	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_CP046312	Lactobacillus crispatus strain FDAARGOS_743 plasmid unnamed1, complete sequence	9531-9562	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_CP026504	Lactobacillus crispatus strain AB70 plasmid pLcAB70, complete sequence	15668-15699	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_CP044414	Lactobacillus sp. JM1 plasmid unnamed2, complete sequence	7588-7619	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_CP040501	Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence	36681-36712	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NZ_CP008839	Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence	17143-17174	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	NC_048859	Bifidobacterium phage BadAargau2, complete genome	1859-1890	8	0.75
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	MN047793	Xanthomonas phage Xoo-sp13, complete genome	123954-123985	8	0.75
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NC_018454	Cronobacter phage phiES15, complete genome	7500-7531	8	0.75
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	JQ780327	Cronobacter phage phiES15, complete sequence	7500-7531	8	0.75
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	JN849462	Vibriophage phi-pp2, complete genome	105709-105740	8	0.75
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MT135024	Vibrio phage V05, complete genome	70655-70686	8	0.75
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MT135026	Vibrio phage V09, complete genome	238651-238682	8	0.75
NC_017566_1	1.34\|731467\|32\|NC_017566\|PILER-CR	731467-731498	32	MT135025	Vibrio phage V07, complete genome	153167-153198	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_KR052811	Lactobacillus crispatus strain L6 plasmid pLc17, complete sequence	1577-1608	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_CP046312	Lactobacillus crispatus strain FDAARGOS_743 plasmid unnamed1, complete sequence	9531-9562	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_CP026504	Lactobacillus crispatus strain AB70 plasmid pLcAB70, complete sequence	15668-15699	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_CP044414	Lactobacillus sp. JM1 plasmid unnamed2, complete sequence	7588-7619	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_CP040501	Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence	36681-36712	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NZ_CP008839	Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence	17143-17174	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	NC_048859	Bifidobacterium phage BadAargau2, complete genome	1859-1890	8	0.75
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	MN047793	Xanthomonas phage Xoo-sp13, complete genome	123954-123985	8	0.75
NC_017566_2	2.2\|1971368\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971368-1971399	32	MN047793	Xanthomonas phage Xoo-sp13, complete genome	153812-153843	8	0.75
NC_017566_2	2.7\|1971668\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971668-1971699	32	MN692995	Marine virus AFVG_117M6, complete genome	17744-17775	8	0.75
NC_017566_2	2.8\|1971728\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971728-1971759	32	MN693328	Marine virus AFVG_25M83, complete genome	46673-46704	8	0.75
NC_017566_2	2.16\|1972208\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972208-1972239	32	MH992121	UNVERIFIED: Escherichia phage MLF4, partial genome	102396-102427	8	0.75
NC_017566_2	2.16\|1972208\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972208-1972239	32	NC_049857	Lactococcus phage P1048, complete genome	97932-97963	8	0.75
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	360675-360706	8	0.75
NC_017566_2	2.21\|1972508\|32\|NC_017566\|CRISPRCasFinder,CRT	1972508-1972539	32	JX415535	Escherichia phage ECBP1, complete genome	57733-57764	8	0.75
NC_017566_2	2.21\|1972508\|32\|NC_017566\|CRISPRCasFinder,CRT	1972508-1972539	32	MH669274	Escherichia phage PD38, complete genome	58114-58145	8	0.75
NC_017566_2	2.21\|1972508\|32\|NC_017566\|CRISPRCasFinder,CRT	1972508-1972539	32	KJ135004	Enterobacteria phage Bp4, complete genome	14472-14503	8	0.75
NC_017566_5	5.8\|2467253\|32\|NC_017566\|CRISPRCasFinder,CRT	2467253-2467284	32	KJ081346	Bacillus phage BCP8-2, complete genome	84134-84165	8	0.75
NC_017566_5	5.8\|2467253\|32\|NC_017566\|CRISPRCasFinder,CRT	2467253-2467284	32	MN364664	Xanthomonas phage Xoo-sp15, complete genome	143876-143907	8	0.75
NC_017566_5	5.19\|2467913\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467913-2467944	32	KY984068	Erwinia phage vB_EamM_Y3, complete genome	176419-176450	8	0.75
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	MN693374	Marine virus AFVG_25M38, complete genome	33428-33459	8	0.75
NC_017566_5	5.29\|2468513\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468513-2468544	32	NZ_CP017588	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ07, complete sequence	58068-58099	8	0.75
NC_017566_5	5.30\|2468573\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468573-2468604	32	KX119175	Helicobacter phage Pt22899G, complete genome	28443-28474	8	0.75
NC_017566_5	5.38\|2469053\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469053-2469084	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	59747-59778	8	0.75
NC_017566_5	5.48\|2469654\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469654-2469685	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	74796-74827	8	0.75
NC_017566_5	5.51\|2469834\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469834-2469865	32	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	8431-8462	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_015257	Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence	3220-3251	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_015260	Tetragenococcus halophilus plasmid pHDC-A DNA, complete sequence	4926-4957	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_015261	Tetragenococcus halophilus plasmid pHDC-RI DNA, complete sequence	20136-20167	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_015255	Tetragenococcus halophilus HO plasmid pHDC-HO, complete sequence	4926-4957	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_024991	Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB	6068-6099	8	0.75
NC_017566_5	5.64\|2470615\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470615-2470646	32	NC_024990	Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA	6068-6099	8	0.75
NC_017566_5	5.68\|2470855\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470855-2470886	32	NZ_CP015351	Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence	102521-102552	8	0.75
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	290707-290738	8	0.75
NC_017566_1	1.1\|731105\|32\|NC_017566\|CRISPRCasFinder,CRT	731105-731136	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	342640-342671	9	0.719
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NZ_MH362811	Acinetobacter baumannii strain 11A1314CRGN088 plasmid pO237-3, complete sequence	13700-13731	9	0.719
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NZ_MH362812	Acinetobacter baumannii strain 11A1314CRGN008 plasmid pO237-1, complete sequence	7339-7370	9	0.719
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NZ_CP015486	Acinetobacter baumannii strain ORAB01 plasmid pORAB01-3, complete sequence	4063-4094	9	0.719
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NZ_MK431775	Acinetobacter baumannii strain 11A14CRGN003 plasmid pO237-4, complete sequence	7339-7370	9	0.719
NC_017566_1	1.3\|731225\|32\|NC_017566\|CRISPRCasFinder,CRT	731225-731256	32	NZ_MH362813	Acinetobacter baumannii strain 11A1213CRGN055 plasmid pO237-2, complete sequence	7339-7370	9	0.719
NC_017566_1	1.14\|731885\|32\|NC_017566\|CRISPRCasFinder,CRT	731885-731916	32	NZ_AP018442	Undibacterium sp. YM2 plasmid pUYM01, complete sequence	157156-157187	9	0.719
NC_017566_1	1.20\|732245\|32\|NC_017566\|CRISPRCasFinder,CRT	732245-732276	32	NZ_CP032314	Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence	67992-68023	9	0.719
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	MN693355	Marine virus AFVG_25M40, complete genome	8812-8843	9	0.719
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	MK504443	Lactobacillus phage 521B, complete genome	18444-18475	9	0.719
NC_017566_1	1.22\|732365\|32\|NC_017566\|CRISPRCasFinder,CRT	732365-732396	32	MK504446	Lactobacillus phage SAC12B, complete genome	14299-14330	9	0.719
NC_017566_1	1.28\|731107\|32\|NC_017566\|PILER-CR	731107-731138	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	342640-342671	9	0.719
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NZ_MH362811	Acinetobacter baumannii strain 11A1314CRGN088 plasmid pO237-3, complete sequence	13700-13731	9	0.719
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NZ_MH362812	Acinetobacter baumannii strain 11A1314CRGN008 plasmid pO237-1, complete sequence	7339-7370	9	0.719
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NZ_CP015486	Acinetobacter baumannii strain ORAB01 plasmid pORAB01-3, complete sequence	4063-4094	9	0.719
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NZ_MK431775	Acinetobacter baumannii strain 11A14CRGN003 plasmid pO237-4, complete sequence	7339-7370	9	0.719
NC_017566_1	1.30\|731227\|32\|NC_017566\|PILER-CR	731227-731258	32	NZ_MH362813	Acinetobacter baumannii strain 11A1213CRGN055 plasmid pO237-2, complete sequence	7339-7370	9	0.719
NC_017566_1	1.41\|731887\|32\|NC_017566\|PILER-CR	731887-731918	32	NZ_AP018442	Undibacterium sp. YM2 plasmid pUYM01, complete sequence	157156-157187	9	0.719
NC_017566_1	1.47\|732247\|32\|NC_017566\|PILER-CR	732247-732278	32	NZ_CP032314	Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence	67992-68023	9	0.719
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	MN693355	Marine virus AFVG_25M40, complete genome	8812-8843	9	0.719
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	MK504443	Lactobacillus phage 521B, complete genome	18444-18475	9	0.719
NC_017566_1	1.49\|732367\|32\|NC_017566\|PILER-CR	732367-732398	32	MK504446	Lactobacillus phage SAC12B, complete genome	14299-14330	9	0.719
NC_017566_2	2.9\|1971788\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971788-1971819	32	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	89929-89960	9	0.719
NC_017566_2	2.12\|1971968\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971968-1971999	32	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	61356-61387	9	0.719
NC_017566_2	2.12\|1971968\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971968-1971999	32	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	125732-125763	9	0.719
NC_017566_2	2.15\|1972148\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972148-1972179	32	MK327933	Escherichia phage vB_EcoM_G2285, complete genome	165700-165731	9	0.719
NC_017566_2	2.17\|1972268\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972268-1972299	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	474723-474754	9	0.719
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	MG592450	Vibrio phage 1.074.O._10N.222.49.B7, partial genome	25055-25086	9	0.719
NC_017566_2	2.20\|1972448\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972448-1972479	32	MH153807	Rhodococcus phage Peregrin, complete genome	19566-19597	9	0.719
NC_017566_2	2.21\|1972508\|32\|NC_017566\|CRISPRCasFinder,CRT	1972508-1972539	32	MN693598	Marine virus AFVG_25M403, complete genome	20582-20613	9	0.719
NC_017566_5	5.2\|2466893\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2466893-2466924	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	252277-252308	9	0.719
NC_017566_5	5.5\|2467073\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467073-2467104	32	MH536815	Streptomyces phage Crosby, complete genome	36178-36209	9	0.719
NC_017566_5	5.5\|2467073\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467073-2467104	32	MH229864	Streptomyces phage UNTPL, complete genome	36451-36482	9	0.719
NC_017566_5	5.10\|2467373\|32\|NC_017566\|CRISPRCasFinder,CRT	2467373-2467404	32	AP013515	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S27-C25	21856-21887	9	0.719
NC_017566_5	5.14\|2467613\|32\|NC_017566\|CRISPRCasFinder,CRT	2467613-2467644	32	MN694370	Marine virus AFVG_250M325, complete genome	38102-38133	9	0.719
NC_017566_5	5.14\|2467613\|32\|NC_017566\|CRISPRCasFinder,CRT	2467613-2467644	32	MN694518	Marine virus AFVG_250M326, complete genome	5216-5247	9	0.719
NC_017566_5	5.22\|2468093\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468093-2468124	32	NZ_CP012500	Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence	210259-210290	9	0.719
NC_017566_5	5.22\|2468093\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468093-2468124	32	NZ_CP012501	Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence	56526-56557	9	0.719
NC_017566_5	5.22\|2468093\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468093-2468124	32	NZ_CP012501	Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence	124264-124295	9	0.719
NC_017566_5	5.22\|2468093\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468093-2468124	32	NZ_CP012499	Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence	84688-84719	9	0.719
NC_017566_5	5.23\|2468153\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468153-2468184	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	478200-478231	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	83094-83125	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	CP041518	Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence	107561-107592	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	NZ_CP018876	Bacillus megaterium strain JX285 plasmid 3, complete sequence	128656-128687	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	MK448893	Streptococcus phage Javan270, complete genome	15404-15435	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	MF547663	Clostridioides phage LIBA2945, complete genome	128029-128060	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	54195-54226	9	0.719
NC_017566_5	5.28\|2468453\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468453-2468484	32	AP013437	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C100-MedDCM-OCT-S33-C20	30086-30117	9	0.719
NC_017566_5	5.35\|2468873\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468873-2468904	32	MW117966	Synechococcus phage S-H9-1, complete genome	91557-91588	9	0.719
NC_017566_5	5.35\|2468873\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468873-2468904	32	KU686211	Synechococcus phage S-WAM2 isolate 0810PA29, complete genome	155638-155669	9	0.719
NC_017566_5	5.45\|2469474\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469474-2469505	32	MK250016	Prevotella phage Lak-A1, complete genome	323579-323610	9	0.719
NC_017566_5	5.46\|2469534\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469534-2469565	32	MK905543	Vibrio phage USC-1, complete genome	171394-171425	9	0.719
NC_017566_5	5.46\|2469534\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469534-2469565	32	MK358448	Vibrio phage 5, complete genome	93350-93381	9	0.719
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	NZ_CP015332	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpT28, complete sequence	22831-22862	9	0.719
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	31553-31584	9	0.719
NC_017566_5	5.55\|2470074\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470074-2470105	32	NZ_CP020865	Paenibacillus sp. Cedars plasmid unnamed2, complete sequence	17565-17596	9	0.719
NC_017566_5	5.56\|2470134\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470134-2470165	32	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	151330-151361	9	0.719
NC_017566_5	5.56\|2470134\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470134-2470165	32	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	76110-76141	9	0.719
NC_017566_5	5.73\|2471155\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471155-2471186	32	LC576631	Staphylococcus phage vB_SauH_DELF3 DNA, complete sequence	18932-18963	9	0.719
NC_017566_5	5.74\|2471215\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471215-2471246	32	MN693219	Marine virus AFVG_25M370, complete genome	14681-14712	9	0.719
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	68086-68117	9	0.719
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	NC_011775	Bacillus cereus G9842 plasmid pG9842_209, complete sequence	46425-46456	9	0.719
NC_017566_5	5.75\|2471275\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471275-2471306	32	NZ_AP022559	Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence	22299-22330	9	0.719
NC_017566_5	5.76\|2471335\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471335-2471366	32	NC_009496	Clostridium botulinum A str. ATCC 3502 plasmid pBOT3502, complete sequence	2051-2082	9	0.719
NC_017566_5	5.76\|2471335\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471335-2471366	32	NZ_CP046451	Clostridium botulinum strain NCTC 13319 plasmid unnamed1, complete sequence	10463-10494	9	0.719
NC_017566_5	5.79\|2471516\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471516-2471547	32	MN694028	Marine virus AFVG_250M137, complete genome	35774-35805	9	0.719
NC_017566_5	5.81\|2471636\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471636-2471667	32	MK962629	Achromobacter phage vB_AxyP_19-32_Axy10, complete genome	21861-21892	9	0.719
NC_017566_5	5.81\|2471636\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471636-2471667	32	MK962639	Achromobacter phage vB_AxyP_19-32_Axy22, complete genome	19698-19729	9	0.719
NC_017566_5	5.81\|2471636\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471636-2471667	32	MK962630	Achromobacter phage vB_AxyP_19-32_Axy11, complete genome	20643-20674	9	0.719
NC_017566_1	1.10\|731645\|32\|NC_017566\|CRISPRCasFinder,CRT	731645-731676	32	NC_030948	Ralstonia phage RSP15 DNA, complete genome	106365-106396	10	0.688
NC_017566_1	1.12\|731765\|32\|NC_017566\|CRISPRCasFinder,CRT	731765-731796	32	MN693068	Marine virus AFVG_25M252, complete genome	18453-18484	10	0.688
NC_017566_1	1.12\|731765\|32\|NC_017566\|CRISPRCasFinder,CRT	731765-731796	32	MN693337	Marine virus AFVG_25M253, complete genome	14404-14435	10	0.688
NC_017566_1	1.20\|732245\|32\|NC_017566\|CRISPRCasFinder,CRT	732245-732276	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	255846-255877	10	0.688
NC_017566_1	1.37\|731647\|32\|NC_017566\|PILER-CR	731647-731678	32	NC_030948	Ralstonia phage RSP15 DNA, complete genome	106365-106396	10	0.688
NC_017566_1	1.39\|731767\|32\|NC_017566\|PILER-CR	731767-731798	32	MN693068	Marine virus AFVG_25M252, complete genome	18453-18484	10	0.688
NC_017566_1	1.39\|731767\|32\|NC_017566\|PILER-CR	731767-731798	32	MN693337	Marine virus AFVG_25M253, complete genome	14404-14435	10	0.688
NC_017566_1	1.47\|732247\|32\|NC_017566\|PILER-CR	732247-732278	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	255846-255877	10	0.688
NC_017566_2	2.8\|1971728\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971728-1971759	32	KF787095	Achromobacter phage JWAlpha, complete genome	37339-37370	10	0.688
NC_017566_2	2.8\|1971728\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971728-1971759	32	KF787094	Achromobacter phage JWDelta, complete genome	38612-38643	10	0.688
NC_017566_2	2.9\|1971788\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971788-1971819	32	NZ_CP017303	Rhodococcus sp. YL-1 plasmid pYLL1 sequence	309140-309171	10	0.688
NC_017566_2	2.12\|1971968\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971968-1971999	32	AP014288	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C33, * SEQUENCING IN PROGRESS *	9604-9635	10	0.688
NC_017566_2	2.13\|1972028\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972028-1972059	32	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	111262-111293	10	0.688
NC_017566_2	2.13\|1972028\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972028-1972059	32	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	111303-111334	10	0.688
NC_017566_2	2.13\|1972028\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972028-1972059	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	444670-444701	10	0.688
NC_017566_2	2.19\|1972388\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1972388-1972419	32	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	87607-87638	10	0.688
NC_017566_5	5.2\|2466893\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2466893-2466924	32	NZ_CP032053	Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence	64751-64782	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	250046-250077	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	261505-261536	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	261273-261304	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	261271-261302	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	261271-261302	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	264683-264714	10	0.688
NC_017566_5	5.6\|2467133\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2467133-2467164	32	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	261273-261304	10	0.688
NC_017566_5	5.23\|2468153\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468153-2468184	32	NC_047875	Salmonella phage UPF_BP1, complete genome	10947-10978	10	0.688
NC_017566_5	5.27\|2468393\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468393-2468424	32	MN812722	Vibrio phage NF, complete genome	9588-9619	10	0.688
NC_017566_5	5.37\|2468993\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468993-2469024	32	MH572493	Microviridae sp. isolate SD_HF_33, complete genome	3432-3463	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	NC_008201	Mannheimia phage phiMHaA1, complete genome	32970-33001	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	33045-33076	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	33009-33040	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	33163-33194	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	33370-33401	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	35192-35223	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	34208-34239	10	0.688
NC_017566_5	5.47\|2469594\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469594-2469625	32	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	32970-33001	10	0.688
NC_017566_5	5.53\|2469954\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2469954-2469985	32	NZ_CP022518	Pantoea vagans strain FBS135 plasmid pPant2, complete sequence	23277-23308	10	0.688
NC_017566_5	5.56\|2470134\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470134-2470165	32	MN693029	Marine virus AFVG_117M56, complete genome	58414-58445	10	0.688
NC_017566_5	5.56\|2470134\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470134-2470165	32	MN692985	Marine virus AFVG_117M57, complete genome	58559-58590	10	0.688
NC_017566_5	5.57\|2470194\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2470194-2470225	32	NZ_CP006590	Hymenobacter sp. APR13 plasmid pHC, complete sequence	2438-2469	10	0.688
NC_017566_5	5.74\|2471215\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471215-2471246	32	MT074138	Bacteroides phage DAC17, complete genome	13748-13779	10	0.688
NC_017566_5	5.74\|2471215\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2471215-2471246	32	MT074136	Bacteroides phage DAC15, complete genome	14102-14133	10	0.688
NC_017566_1	1.6\|731405\|32\|NC_017566\|CRISPRCasFinder,CRT	731405-731436	32	MN694188	Marine virus AFVG_250M625, complete genome	26456-26487	11	0.656
NC_017566_1	1.12\|731765\|32\|NC_017566\|CRISPRCasFinder,CRT	731765-731796	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1261666-1261697	11	0.656
NC_017566_1	1.12\|731765\|32\|NC_017566\|CRISPRCasFinder,CRT	731765-731796	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	382746-382777	11	0.656
NC_017566_1	1.33\|731407\|32\|NC_017566\|PILER-CR	731407-731438	32	MN694188	Marine virus AFVG_250M625, complete genome	26456-26487	11	0.656
NC_017566_1	1.39\|731767\|32\|NC_017566\|PILER-CR	731767-731798	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1261666-1261697	11	0.656
NC_017566_1	1.39\|731767\|32\|NC_017566\|PILER-CR	731767-731798	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	382746-382777	11	0.656
NC_017566_2	2.3\|1971428\|32\|NC_017566\|PILER-CR,CRISPRCasFinder,CRT	1971428-1971459	32	NZ_CP046706	Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence	179606-179637	11	0.656
NC_017566_5	5.27\|2468393\|32\|NC_017566\|CRISPRCasFinder,CRT,PILER-CR	2468393-2468424	32	MN855774	Myoviridae sp. isolate 278, complete genome	23596-23627	11	0.656

1. spacer 5.66|2470735|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035695 (Vibrio furnissii strain 2419-04 plasmid unnamed1) position: , mismatch: 5, identity: 0.844

ataaaccttggctatgtgagtgctacccgaac	CRISPR spacer
aaaaaccttggctttgtgagtgctacccacaa	Protospacer
* *********** **************. *

2. spacer 5.66|2470735|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MT662115 (Vibrio phage ValB1MD-2, complete genome) position: , mismatch: 5, identity: 0.844

ataaaccttggctatgtgagtgctacccgaac	CRISPR spacer
aaaaaccttggctatgcgagtgctacccacaa	Protospacer
* **************.***********. *

3. spacer 5.66|2470735|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 5, identity: 0.844

ataaaccttggctatgtgagtgctacccgaac	CRISPR spacer
aaaaaccttggctttgtgagtgctacccacag	Protospacer
* *********** **************. *

4. spacer 1.8|731525|32|NC_017566|CRISPRCasFinder,CRT matches to MN693542 (Marine virus AFVG_25M165, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

5. spacer 1.8|731525|32|NC_017566|CRISPRCasFinder,CRT matches to MN693056 (Marine virus AFVG_25M10, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

6. spacer 1.8|731525|32|NC_017566|CRISPRCasFinder,CRT matches to MN693152 (Marine virus AFVG_25M11, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcatttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

7. spacer 1.8|731525|32|NC_017566|CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

8. spacer 1.35|731527|32|NC_017566|PILER-CR matches to MN693542 (Marine virus AFVG_25M165, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

9. spacer 1.35|731527|32|NC_017566|PILER-CR matches to MN693056 (Marine virus AFVG_25M10, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

10. spacer 1.35|731527|32|NC_017566|PILER-CR matches to MN693152 (Marine virus AFVG_25M11, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcatttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

11. spacer 1.35|731527|32|NC_017566|PILER-CR matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 6, identity: 0.812

attttgcatcagctttcagatttagaagcaaa	CRISPR spacer
aatttgcatcagcgtttagatttagaggtaga	Protospacer
* *********** **.*********.*.*.*

12. spacer 2.9|1971788|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000056 (Agrobacterium vitis strain Tun201 plasmid pTi_Tun201, complete sequence) position: , mismatch: 6, identity: 0.812

tcgcttcattctgcgctcgatgccagtgtaaa--	CRISPR spacer
tcgcttctttgtgcgctcgatgc--gtgcaagtg	Protospacer
******* ** ************  ***.**.

13. spacer 2.16|1972208|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MG696114 (Proteus phage phiP4-3, complete genome) position: , mismatch: 6, identity: 0.812

aatgcatcaatctctttatctgcaatggcctt	CRISPR spacer
aatccatcaatttctttatctgcattatgctt	Protospacer
*** *******.************ *.  ***

14. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NC_001884 (Bacillus phage SPBc2, complete genome) position: , mismatch: 6, identity: 0.812

agtcagaattaaaataaacgattt-aaattggt	CRISPR spacer
agtcagaattaagctaaacgatttcttattga-	Protospacer
************. **********   ****.

15. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to AF020713 (Bacteriophage SPBc2 complete genome) position: , mismatch: 6, identity: 0.812

agtcagaattaaaataaacgattt-aaattggt	CRISPR spacer
agtcagaattaagctaaacgatttcttattga-	Protospacer
************. **********   ****.

16. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MT601274 (Bacillus phage vB_BsuS-Goe13, complete genome) position: , mismatch: 6, identity: 0.812

agtcagaattaaaataaacgattt-aaattggt	CRISPR spacer
agtcagaattaagctaaacgatttcttattga-	Protospacer
************. **********   ****.

17. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MT601273 (Bacillus phage vB_BsuS-Goe12, complete genome) position: , mismatch: 6, identity: 0.812

agtcagaattaaaataaacgattt-aaattggt	CRISPR spacer
agtcagaattaagctaaacgatttcttattga-	Protospacer
************. **********   ****.

18. spacer 5.51|2469834|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 6, identity: 0.812

aagtca-ctaaaacattacaaacttcatctggt	CRISPR spacer
-tgtcatctaaaacattacaagcttcttcttct	Protospacer
  **** **************.**** ***  *

19. spacer 5.66|2470735|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 6, identity: 0.812

ataaaccttggctatgtgagtgctacccgaac	CRISPR spacer
aaaagccttggctttgtgagtgctacccacaa	Protospacer
* **.******** **************. *

20. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to AP014122 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4-MedDCM-OCT-S43-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
ttttttattcatgttaattactccttttttta	Protospacer
*. ***************.*******. ** *

21. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to AP014140 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S37-C62, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
taatttattcatgttaattactccttttttta	Protospacer
* .***************.*******. ** *

22. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to AP014141 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S46-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
taatttattcatgttaattactccttttttta	Protospacer
* .***************.*******. ** *

23. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_029100 (Pseudoalteromonas phage Pq0, complete genome) position: , mismatch: 6, identity: 0.812

tcgtttattcatgttaatcactccttcattaa-	CRISPR spacer
tggttttttcattttaatcactcctt-acaaac	Protospacer
* **** ***** ************* *. **

24. spacer 5.82|2471696|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KC292027 (Halovirus HCTV-5, complete genome) position: , mismatch: 6, identity: 0.812

taatg-acttctcgacttacttctttactcgtt	CRISPR spacer
-agtacacttctcgacttctttctttactcggt	Protospacer
 *.*. ************ .*********** *

25. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MK448653 (Streptococcus satellite phage Javan77, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

26. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MK448655 (Streptococcus satellite phage Javan80, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

27. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MK448606 (Streptococcus satellite phage Javan72, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

28. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MN794232 (Vibrio phage VH1_2019, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccatttgcgtttgaaaatctcaatcacgaa	Protospacer
**..*   ** **********.**********

29. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MK448419 (Streptococcus satellite phage Javan307, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

30. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MK448653 (Streptococcus satellite phage Javan77, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

31. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MK448655 (Streptococcus satellite phage Javan80, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

32. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MK448606 (Streptococcus satellite phage Javan72, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

33. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MN794232 (Vibrio phage VH1_2019, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccatttgcgtttgaaaatctcaatcacgaa	Protospacer
**..*   ** **********.**********

34. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MK448419 (Streptococcus satellite phage Javan307, complete genome) position: , mismatch: 7, identity: 0.781

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atgaagaagcttttgaaaataccaaacaagct	Protospacer
**  **************** **** ** *

35. spacer 5.2|2466893|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.781

tgatcgagtacagcggcattgccga-gttaacg	CRISPR spacer
tgatcgagtacagcggcgatgccgacaccgac-	Protospacer
*****************. ****** ....**

36. spacer 5.4|2467013|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to JF270478 (Psychrobacter phage Psymv2, complete genome) position: , mismatch: 7, identity: 0.781

actgggtttactgctggcgtcggggtggctgt	CRISPR spacer
ggtgggtttgctgctgccgtcggggtgcgagt	Protospacer
. *******.****** **********   **

37. spacer 5.25|2468273|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MG592626 (Vibrio phage 1.262.O._10N.286.51.A9, partial genome) position: , mismatch: 7, identity: 0.781

ggcact-atgggaaaacgtgccgctaactttga	CRISPR spacer
-acactcatgggaacacgagccgctaacttcat	Protospacer
 .**** ******* *** ***********..

38. spacer 5.42|2469294|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MG592429 (Vibrio phage 1.047.O._10N.286.55.F2, partial genome) position: , mismatch: 7, identity: 0.781

gtggctcagtgccaacaaacaggcgatctaac	CRISPR spacer
atcggtcgatgccaacaaacgggcgacctaac	Protospacer
.* * **..***********.*****.*****

39. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK613349 (Roseobacter phage CRP-7, complete genome) position: , mismatch: 7, identity: 0.781

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
atggagaaataaaatggaaactaaaacttatg	Protospacer
* ..******.***** ************* .

40. spacer 5.69|2470915|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 7, identity: 0.781

ctgcgcaatgacccgcgcttagttgtgttagt	CRISPR spacer
ttccgcaatgacccgcgcctggttgtgctggc	Protospacer
.* ***************.*.******.*.*.

41. spacer 5.69|2470915|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 7, identity: 0.781

ctgcgcaatgacccgcgcttagttgtgttagt	CRISPR spacer
ttccgcaatgacccgcgcctggttgtgctggc	Protospacer
.* ***************.*.******.*.*.

42. spacer 5.69|2470915|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 7, identity: 0.781

ctgcgcaatgacccgcgcttagttgtgttagt	CRISPR spacer
ttccgcaatgacccgcgcctggttgtgctggc	Protospacer
.* ***************.*.******.*.*.

43. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NC_018454 (Cronobacter phage phiES15, complete genome) position: , mismatch: 8, identity: 0.75

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
cctgatttttatgaagcctgtgacaagaaaag	Protospacer
.******* **********.***** .*.* .

44. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to JQ780327 (Cronobacter phage phiES15, complete sequence) position: , mismatch: 8, identity: 0.75

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
cctgatttttatgaagcctgtgacaagaaaag	Protospacer
.******* **********.***** .*.* .

45. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to JN849462 (Vibriophage phi-pp2, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

46. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MT135024 (Vibrio phage V05, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

47. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MT135026 (Vibrio phage V09, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

48. spacer 1.7|731465|32|NC_017566|CRISPRCasFinder,CRT matches to MT135025 (Vibrio phage V07, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

49. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_KR052811 (Lactobacillus crispatus strain L6 plasmid pLc17, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

50. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP046312 (Lactobacillus crispatus strain FDAARGOS_743 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

51. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP026504 (Lactobacillus crispatus strain AB70 plasmid pLcAB70, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

52. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP044414 (Lactobacillus sp. JM1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

53. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP040501 (Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

54. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP008839 (Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

55. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to NC_048859 (Bifidobacterium phage BadAargau2, complete genome) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
caatagtttaattgattcggaaaattcaaaga	Protospacer
 .***. ******************  * *.*

56. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaatttattgattccgaaactactctga	Protospacer
********* ******** **** *.  * .*

57. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NC_018454 (Cronobacter phage phiES15, complete genome) position: , mismatch: 8, identity: 0.75

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
cctgatttttatgaagcctgtgacaagaaaag	Protospacer
.******* **********.***** .*.* .

58. spacer 1.30|731227|32|NC_017566|PILER-CR matches to JQ780327 (Cronobacter phage phiES15, complete sequence) position: , mismatch: 8, identity: 0.75

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
cctgatttttatgaagcctgtgacaagaaaag	Protospacer
.******* **********.***** .*.* .

59. spacer 1.34|731467|32|NC_017566|PILER-CR matches to JN849462 (Vibriophage phi-pp2, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

60. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MT135024 (Vibrio phage V05, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

61. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MT135026 (Vibrio phage V09, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

62. spacer 1.34|731467|32|NC_017566|PILER-CR matches to MT135025 (Vibrio phage V07, complete genome) position: , mismatch: 8, identity: 0.75

atttagaagcttttgaaaatcccaatcacgaa	CRISPR spacer
atccgtttgcgtttgaaaatctcaatcacgaa	Protospacer
**...   ** **********.**********

63. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_KR052811 (Lactobacillus crispatus strain L6 plasmid pLc17, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

64. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_CP046312 (Lactobacillus crispatus strain FDAARGOS_743 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

65. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_CP026504 (Lactobacillus crispatus strain AB70 plasmid pLcAB70, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

66. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_CP044414 (Lactobacillus sp. JM1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

67. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_CP040501 (Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

68. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NZ_CP008839 (Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaactaattgatttggaaaagaaatatt	Protospacer
*******.*********.****** ..*.*

69. spacer 1.49|732367|32|NC_017566|PILER-CR matches to NC_048859 (Bifidobacterium phage BadAargau2, complete genome) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
caatagtttaattgattcggaaaattcaaaga	Protospacer
 .***. ******************  * *.*

70. spacer 1.49|732367|32|NC_017566|PILER-CR matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 8, identity: 0.75

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaatttattgattccgaaactactctga	Protospacer
********* ******** **** *.  * .*

71. spacer 2.2|1971368|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 8, identity: 0.75

tatcaggtcggacgacttaatcgtgtcgttca	CRISPR spacer
catcaggtcgaactacttaatcgtatagattc	Protospacer
.*********.** **********.* * *.

72. spacer 2.7|1971668|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MN692995 (Marine virus AFVG_117M6, complete genome) position: , mismatch: 8, identity: 0.75

atattttaaaagcaatgccagatggtcgcttg	CRISPR spacer
agatttggaaagcaatgccagatggtccagaa	Protospacer
* **** .*******************    .

73. spacer 2.8|1971728|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MN693328 (Marine virus AFVG_25M83, complete genome) position: , mismatch: 8, identity: 0.75

aacccgcgccagaaatggaaggttgtacctag	CRISPR spacer
gatcctgtccagaaattgaaggttgaacctat	Protospacer
.*.**   ******** ******** *****

74. spacer 2.16|1972208|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MH992121 (UNVERIFIED: Escherichia phage MLF4, partial genome) position: , mismatch: 8, identity: 0.75

aatgcatcaatctctttatctgcaatggcctt	CRISPR spacer
agttcatcaatgtctttatttgcaatgcctga	Protospacer
*.* ******* *******.******* *.

75. spacer 2.16|1972208|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 8, identity: 0.75

aatgcatcaatctctttatctgcaatggcctt	CRISPR spacer
aatgcttcaatctctttatttgcttctaccat	Protospacer
***** *************.***  . .** *

76. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.75

agtcagaattaaaataaacgatttaaattggt	CRISPR spacer
cttgataagttaaataaacgatttaaattaga	Protospacer
  * * ** * ******************.*

77. spacer 2.21|1972508|32|NC_017566|CRISPRCasFinder,CRT matches to JX415535 (Escherichia phage ECBP1, complete genome) position: , mismatch: 8, identity: 0.75

cacctccagtgaatgttttaacaggtgtcata	CRISPR spacer
cacctccagagaatgctttaacaccagttagt	Protospacer
********* *****.*******   **.*

78. spacer 2.21|1972508|32|NC_017566|CRISPRCasFinder,CRT matches to MH669274 (Escherichia phage PD38, complete genome) position: , mismatch: 8, identity: 0.75

cacctccagtgaatgttttaacaggtgtcata	CRISPR spacer
cacctccagagaatgctttaacaccagttagt	Protospacer
********* *****.*******   **.*

79. spacer 2.21|1972508|32|NC_017566|CRISPRCasFinder,CRT matches to KJ135004 (Enterobacteria phage Bp4, complete genome) position: , mismatch: 8, identity: 0.75

cacctccagtgaatgttttaacaggtgtcata	CRISPR spacer
cacctccagagaatgctttaacaccagttagt	Protospacer
********* *****.*******   **.*

80. spacer 5.8|2467253|32|NC_017566|CRISPRCasFinder,CRT matches to KJ081346 (Bacillus phage BCP8-2, complete genome) position: , mismatch: 8, identity: 0.75

aatcttagtcgtgttttagattttaattgcga	CRISPR spacer
tttcttagtcgtgtttttcattttaaattccc	Protospacer
  ***************  ******* * *

81. spacer 5.8|2467253|32|NC_017566|CRISPRCasFinder,CRT matches to MN364664 (Xanthomonas phage Xoo-sp15, complete genome) position: , mismatch: 8, identity: 0.75

aatcttagtcgtgttttagattttaattgcga	CRISPR spacer
tttcttagtcgtgtttttcattttaaattccc	Protospacer
  ***************  ******* * *

82. spacer 5.19|2467913|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KY984068 (Erwinia phage vB_EamM_Y3, complete genome) position: , mismatch: 8, identity: 0.75

aacaagttgagcgctctgtcgctcaattaatc	CRISPR spacer
atgaagttgaacgctctgttgctcaactcaaa	Protospacer
*  *******.********.******.* *

83. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN693374 (Marine virus AFVG_25M38, complete genome) position: , mismatch: 8, identity: 0.75

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
aattaaaaaagaaattcctttagaaaagaaaa	Protospacer
* ..*  ******* **.*************

84. spacer 5.29|2468513|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017588 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ07, complete sequence) position: , mismatch: 8, identity: 0.75

catcaacttttttatcttcaagagaaggtaaa	CRISPR spacer
ttccaacatttttatctttaagagaagagata	Protospacer
. .**** **********.********. * *

85. spacer 5.30|2468573|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KX119175 (Helicobacter phage Pt22899G, complete genome) position: , mismatch: 8, identity: 0.75

aatgttgagtatgtggataagaggtttttagt	CRISPR spacer
tttgattggtatatggctaagaggtttttagg	Protospacer
  ** * .****.*** **************

86. spacer 5.38|2469053|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

aattaatggaaaaaggtaacaactccattgaa	CRISPR spacer
aattaattgaaaaaggtaaaaactcgcagggg	Protospacer
******* *********** *****    *..

87. spacer 5.48|2469654|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cactaaacttccaactctagagcacgcgctaa	CRISPR spacer
gatgaaactcccaactctggagcacgcattat	Protospacer
 *. *****.********.********..**

88. spacer 5.51|2469834|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aagtcacta-aaacattacaaacttcatctggt	CRISPR spacer
-aatgatggtaaatattaaaaacttcatctggt	Protospacer
 *.* *. . ***.**** **************

89. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_015257 (Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

90. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_015260 (Tetragenococcus halophilus plasmid pHDC-A DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

91. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_015261 (Tetragenococcus halophilus plasmid pHDC-RI DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

92. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_015255 (Tetragenococcus halophilus HO plasmid pHDC-HO, complete sequence) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

93. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_024991 (Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

94. spacer 5.64|2470615|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_024990 (Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA) position: , mismatch: 8, identity: 0.75

gagtatttaacatggctttacctgcgatttta	CRISPR spacer
aagaatttaacgtggctttacctgttgaatta	Protospacer
.** *******.************. .  ***

95. spacer 5.68|2470855|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015351 (Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence) position: , mismatch: 8, identity: 0.75

ttggtctatttggctttataaacttgtaaaaa	CRISPR spacer
tctgttgatgttgctttataaacttgtaaagc	Protospacer
*. **. ** * ******************.

96. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
ctgtttattcatgtgattcactccttttttgt	Protospacer
..************ * *********. **.

97. spacer 1.1|731105|32|NC_017566|CRISPRCasFinder,CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgctctcccgtttctttgctgcttgcta	CRISPR spacer
atggcggtctcccgtttctttgcccgtcccgc	Protospacer
****.* ****************.  *. *

98. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_MH362811 (Acinetobacter baumannii strain 11A1314CRGN088 plasmid pO237-3, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

99. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_MH362812 (Acinetobacter baumannii strain 11A1314CRGN008 plasmid pO237-1, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

100. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP015486 (Acinetobacter baumannii strain ORAB01 plasmid pORAB01-3, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

101. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_MK431775 (Acinetobacter baumannii strain 11A14CRGN003 plasmid pO237-4, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

102. spacer 1.3|731225|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_MH362813 (Acinetobacter baumannii strain 11A1213CRGN055 plasmid pO237-2, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

103. spacer 1.14|731885|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_AP018442 (Undibacterium sp. YM2 plasmid pUYM01, complete sequence) position: , mismatch: 9, identity: 0.719

tgtcggcagccaagcgtattgatgccattagc	CRISPR spacer
cggaaacggccaatcgcattgatgccattagg	Protospacer
.*  ..*.***** **.**************

104. spacer 1.20|732245|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP032314 (Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence) position: , mismatch: 9, identity: 0.719

cactgcttgtttctgaagattgcggcgttctt	CRISPR spacer
gactgcttgtttctgaagaacgcgaactgtgt	Protospacer
 ****************** .***.  * . *

105. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to MN693355 (Marine virus AFVG_25M40, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaattaattaattcagaaaaagattttg	Protospacer
*************.****.***** *. .  .

106. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
aattaaattaattgattcagaaagtgaaagcg	Protospacer
*. ***************.****.**.* . .

107. spacer 1.22|732365|32|NC_017566|CRISPRCasFinder,CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
aattaaattaattgattcagaaagtgaaagcg	Protospacer
*. ***************.****.**.* . .

108. spacer 1.28|731107|32|NC_017566|PILER-CR matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgctctcccgtttctttgctgcttgcta	CRISPR spacer
atggcggtctcccgtttctttgcccgtcccgc	Protospacer
****.* ****************.  *. *

109. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NZ_MH362811 (Acinetobacter baumannii strain 11A1314CRGN088 plasmid pO237-3, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

110. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NZ_MH362812 (Acinetobacter baumannii strain 11A1314CRGN008 plasmid pO237-1, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

111. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NZ_CP015486 (Acinetobacter baumannii strain ORAB01 plasmid pORAB01-3, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

112. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NZ_MK431775 (Acinetobacter baumannii strain 11A14CRGN003 plasmid pO237-4, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

113. spacer 1.30|731227|32|NC_017566|PILER-CR matches to NZ_MH362813 (Acinetobacter baumannii strain 11A1213CRGN055 plasmid pO237-2, complete sequence) position: , mismatch: 9, identity: 0.719

tctgatttatatgaagcctatgacacaagaca	CRISPR spacer
aaagtgttatatgaagcctattacccaagtga	Protospacer
   *  *************** ** ****  *

114. spacer 1.41|731887|32|NC_017566|PILER-CR matches to NZ_AP018442 (Undibacterium sp. YM2 plasmid pUYM01, complete sequence) position: , mismatch: 9, identity: 0.719

tgtcggcagccaagcgtattgatgccattagc	CRISPR spacer
cggaaacggccaatcgcattgatgccattagg	Protospacer
.*  ..*.***** **.**************

115. spacer 1.47|732247|32|NC_017566|PILER-CR matches to NZ_CP032314 (Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence) position: , mismatch: 9, identity: 0.719

cactgcttgtttctgaagattgcggcgttctt	CRISPR spacer
gactgcttgtttctgaagaacgcgaactgtgt	Protospacer
 ****************** .***.  * . *

116. spacer 1.49|732367|32|NC_017566|PILER-CR matches to MN693355 (Marine virus AFVG_25M40, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
agataaattaattaattcagaaaaagattttg	Protospacer
*************.****.***** *. .  .

117. spacer 1.49|732367|32|NC_017566|PILER-CR matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
aattaaattaattgattcagaaagtgaaagcg	Protospacer
*. ***************.****.**.* . .

118. spacer 1.49|732367|32|NC_017566|PILER-CR matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 9, identity: 0.719

agataaattaattgattcggaaaatggacaaa	CRISPR spacer
aattaaattaattgattcagaaagtgaaagcg	Protospacer
*. ***************.****.**.* . .

119. spacer 2.9|1971788|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 9, identity: 0.719

tcgcttcattctgcgctcgatgccagtgtaaa	CRISPR spacer
tcgcttctttgtgcgctcgatgcgtgcgagtg	Protospacer
******* ** ************  *.* . .

120. spacer 2.12|1971968|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 9, identity: 0.719

gttaccaga------attattaatagcagttgttattt	CRISPR spacer
------aaatgatttattattaatagaagtttttattt	Protospacer
      *.*      *********** **** ******

121. spacer 2.12|1971968|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gttaccaga------attattaatagcagttgttattt	CRISPR spacer
------aaatgatttattattaatagaagtttttattt	Protospacer
      *.*      *********** **** ******

122. spacer 2.15|1972148|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MK327933 (Escherichia phage vB_EcoM_G2285, complete genome) position: , mismatch: 9, identity: 0.719

ttcttcggtgccttattttctttaggagccgg	CRISPR spacer
gacttcggtccctttttttctttaggggtaat	Protospacer
  ******* **** ***********.*. .

123. spacer 2.17|1972268|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attcacgaaagaaggaatagagcatgtcacaa	CRISPR spacer
ttccacgaaagaaggaaaagaccatgatcaga	Protospacer
 *.************** *** **** .  .*

124. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MG592450 (Vibrio phage 1.074.O._10N.222.49.B7, partial genome) position: , mismatch: 9, identity: 0.719

agtcagaattaaaataaacgatttaaattggt	CRISPR spacer
ctttatgggtaaaataagcgatttaaatgggt	Protospacer
  *.* .. ********.********** ***

125. spacer 2.20|1972448|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to MH153807 (Rhodococcus phage Peregrin, complete genome) position: , mismatch: 9, identity: 0.719

gctagcaactaagagcgcgctaactttggtgg	CRISPR spacer
ggtagtaactaaaagcgcgctaactccattta	Protospacer
* ***.******.************... * .

126. spacer 2.21|1972508|32|NC_017566|CRISPRCasFinder,CRT matches to MN693598 (Marine virus AFVG_25M403, complete genome) position: , mismatch: 9, identity: 0.719

cacctccagtgaatgttttaacaggtgtcata	CRISPR spacer
ctgctctagtgaatgatttaacaggttttcgt	Protospacer
*  ***.******** ********** *.

127. spacer 5.2|2466893|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

tgatcgagtacagcggcattgccgagttaacg	CRISPR spacer
cgatcgagcacagcggcatcgccgtgaagagc	Protospacer
.*******.**********.**** *  .*

128. spacer 5.5|2467073|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MH536815 (Streptomyces phage Crosby, complete genome) position: , mismatch: 9, identity: 0.719

gaatacatcttccgcacccaacgagccgcggc	CRISPR spacer
cagaagctcttcctcaccgaacgagccgcgcg	Protospacer
 *. *  ****** **** ***********

129. spacer 5.5|2467073|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MH229864 (Streptomyces phage UNTPL, complete genome) position: , mismatch: 9, identity: 0.719

gaatacatcttccgcacccaacgagccgcggc	CRISPR spacer
cagaagctcttcctcaccgaacgagccgcgcg	Protospacer
 *. *  ****** **** ***********

130. spacer 5.10|2467373|32|NC_017566|CRISPRCasFinder,CRT matches to AP013515 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S27-C25) position: , mismatch: 9, identity: 0.719

tcttgcgcccaagcggtttatcgttaacaact	CRISPR spacer
ttatagagccaagtggtttatctttaacaaca	Protospacer
*. *. . *****.******** ********

131. spacer 5.14|2467613|32|NC_017566|CRISPRCasFinder,CRT matches to MN694370 (Marine virus AFVG_250M325, complete genome) position: , mismatch: 9, identity: 0.719

ctttatcgtccgttgttgactgtcataattgc	CRISPR spacer
tctgctacgccgttgttgactgtgatatttgc	Protospacer
..*  *   ************** *** ****

132. spacer 5.14|2467613|32|NC_017566|CRISPRCasFinder,CRT matches to MN694518 (Marine virus AFVG_250M326, complete genome) position: , mismatch: 9, identity: 0.719

ctttatcgtccgttgttgactgtcataattgc	CRISPR spacer
tctgctacgccgttgttgactgtgatatttgc	Protospacer
..*  *   ************** *** ****

133. spacer 5.22|2468093|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012500 (Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgaatatcgctcacaatgtgagtgtggt	CRISPR spacer
agggcgaatatgactcacaatgtgcggcaatt	Protospacer
 ********** .*********** *   . *

134. spacer 5.22|2468093|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgaatatcgctcacaatgtgagtgtggt	CRISPR spacer
agggcgaatatgactcacaatgtgcggcaatt	Protospacer
 ********** .*********** *   . *

135. spacer 5.22|2468093|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgaatatcgctcacaatgtgagtgtggt	CRISPR spacer
agggcgaatatgactcacaatgtgcggcaatt	Protospacer
 ********** .*********** *   . *

136. spacer 5.22|2468093|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012499 (Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgaatatcgctcacaatgtgagtgtggt	CRISPR spacer
agggcgaatatgactcacaatgtgcggcaatt	Protospacer
 ********** .*********** *   . *

137. spacer 5.23|2468153|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgcatgtggtgaaaagtggaaagaccaacaa	CRISPR spacer
ctgacagtcgtgaaaggtggaaagaccaatcc	Protospacer
.**   ** ******.*************.

138. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
cttttgcaaagaaagtcttctagaaaataaag	Protospacer
 ...  *************.******* ***

139. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
cttttgcaaagaaagtcttctagaaaataaag	Protospacer
 ...  *************.******* ***

140. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
cttttgcaaagaaagtcttctagaaaataaag	Protospacer
 ...  *************.******* ***

141. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK448893 (Streptococcus phage Javan270, complete genome) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
cagagtcaaagaaagttttttaaaaaagaaat	Protospacer
    ..**********.*****.********.

142. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
ggtaaaaaaagaaagttttatagaaaagaaat	Protospacer
. . *  *********.** ***********.

143. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
aactgacaaagaatatcttttagaaaagatct	Protospacer
* *.. ******* .**************  .

144. spacer 5.28|2468453|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to AP013437 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C100-MedDCM-OCT-S33-C20) position: , mismatch: 9, identity: 0.719

acccaccaaagaaagtcttttagaaaagaaac	CRISPR spacer
ttttacaaaagaaactcttttagaaaaaacat	Protospacer
 ...** ******* ************.* *.

145. spacer 5.35|2468873|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 9, identity: 0.719

ctgtgtactcgaccatctgcccagcgttgcga	CRISPR spacer
atctctactctaccatctacccagcgttcacg	Protospacer
 * * ***** *******.*********   .

146. spacer 5.35|2468873|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KU686211 (Synechococcus phage S-WAM2 isolate 0810PA29, complete genome) position: , mismatch: 9, identity: 0.719

ctgtgtactcgaccatctgcccagcgttgcga	CRISPR spacer
atttctactctaccatctacccagcgttcacg	Protospacer
 * * ***** *******.*********   .

147. spacer 5.45|2469474|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

gcgatagtgtgggcaattcattattaagaata	CRISPR spacer
tatatggtgttggcaattcattattattatca	Protospacer
   **.**** ***************  * .*

148. spacer 5.46|2469534|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaatctatcatggaaagcgacaactttaa	CRISPR spacer
ggtcaatctatcattgaaatcgacaacatgca	Protospacer
..  ********** **** ******* *  *

149. spacer 5.46|2469534|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaatctatcatggaaagcgacaactttaa	CRISPR spacer
ggtcaatctatcattgaaatcgacaacatgca	Protospacer
..  ********** **** ******* *  *

150. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015332 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpT28, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
aacaagaaatgaaatgcaaaatacgagcagta	Protospacer
** ***************** ** .* . . *

151. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
tagaagaaatgaaataaaaactaaaatagtag	Protospacer
 *.************. *********.   *.

152. spacer 5.55|2470074|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020865 (Paenibacillus sp. Cedars plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

accccgtcaataactcgataacttgtggttct	CRISPR spacer
acctcgtcaataactcgaaaactgacgaccat	Protospacer
***.************** **** ..*... *

153. spacer 5.56|2470134|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgctataaaaatcaag-----catttcagacaatcga	CRISPR spacer
cgctataaaaatcaaggttttcacttccaaaa-----	Protospacer
****************     **.*** .* *

154. spacer 5.56|2470134|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 9, identity: 0.719

cgctataaaaatcaag-----catttcagacaatcga	CRISPR spacer
cgctataaaaatcaaggttttcacttccaaaa-----	Protospacer
****************     **.*** .* *

155. spacer 5.73|2471155|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to LC576631 (Staphylococcus phage vB_SauH_DELF3 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

tcagttactaaaactataagagacttacttac	CRISPR spacer
taccttacaaaaacaataagagacttaaaaag	Protospacer
*   **** ***** ************   *

156. spacer 5.74|2471215|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN693219 (Marine virus AFVG_25M370, complete genome) position: , mismatch: 9, identity: 0.719

atcaattgagtaaagccctagctcttacacta	CRISPR spacer
cagtataaagtaaagacctagctcttactctg	Protospacer
    ** .******* ************ **.

157. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
ttctaaattcatcttaatcactcctccatcct	Protospacer
*. *  ****** ************.***.

158. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
ttctaaattcatcttaatcactcctccatcct	Protospacer
*. *  ****** ************.***.

159. spacer 5.75|2471275|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtttattcatgttaatcactccttcattaa	CRISPR spacer
ccgttttttcatgttcatcactccagggcaaa	Protospacer
.***** ******** ********   .. **

160. spacer 5.76|2471335|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_009496 (Clostridium botulinum A str. ATCC 3502 plasmid pBOT3502, complete sequence) position: , mismatch: 9, identity: 0.719

tatcggtcattattttcacacccattctttaa	CRISPR spacer
acccttaaattattttcatactcattctttaa	Protospacer
  .*    **********.**.**********

161. spacer 5.76|2471335|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046451 (Clostridium botulinum strain NCTC 13319 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tatcggtcattattttcacacccattctttaa	CRISPR spacer
acccttaaattattttcatactcattctttaa	Protospacer
  .*    **********.**.**********

162. spacer 5.79|2471516|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN694028 (Marine virus AFVG_250M137, complete genome) position: , mismatch: 9, identity: 0.719

tagcaacagaaacctgttgagtattagtagaa	CRISPR spacer
caaatacagaaacctctttagtattagtatcc	Protospacer
.*.  ********** ** **********

163. spacer 5.81|2471636|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK962629 (Achromobacter phage vB_AxyP_19-32_Axy10, complete genome) position: , mismatch: 9, identity: 0.719

attgttgatggtcatgtcttgcagggcgtaaa	CRISPR spacer
cttgttggtggtcatttcttgcaggactcgct	Protospacer
 ******.******* *********.* ..

164. spacer 5.81|2471636|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK962639 (Achromobacter phage vB_AxyP_19-32_Axy22, complete genome) position: , mismatch: 9, identity: 0.719

attgttgatggtcatgtcttgcagggcgtaaa	CRISPR spacer
cttgttggtggtcatttcttgcaggactcgct	Protospacer
 ******.******* *********.* ..

165. spacer 5.81|2471636|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MK962630 (Achromobacter phage vB_AxyP_19-32_Axy11, complete genome) position: , mismatch: 9, identity: 0.719

attgttgatggtcatgtcttgcagggcgtaaa	CRISPR spacer
cttgttggtggtcatttcttgcaggactcgct	Protospacer
 ******.******* *********.* ..

166. spacer 1.10|731645|32|NC_017566|CRISPRCasFinder,CRT matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 10, identity: 0.688

aagaatctggataaaagacttcatcagttgaa	CRISPR spacer
cagaatctgggtcaaagacttcattaagaatg	Protospacer
 *********.* ***********.*.  . .

167. spacer 1.12|731765|32|NC_017566|CRISPRCasFinder,CRT matches to MN693068 (Marine virus AFVG_25M252, complete genome) position: , mismatch: 10, identity: 0.688

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
cattgatcgatgcggcagatgaatccattacc	Protospacer
   ..****** ********** ****** .

168. spacer 1.12|731765|32|NC_017566|CRISPRCasFinder,CRT matches to MN693337 (Marine virus AFVG_25M253, complete genome) position: , mismatch: 10, identity: 0.688

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
cattgatcgatgcggcagatgaatccattacc	Protospacer
   ..****** ********** ****** .

169. spacer 1.20|732245|32|NC_017566|CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.688

cactgcttgtttctgaagattgcggcgttctt	CRISPR spacer
gcgggcttgtttctcgagattgcggcggatct	Protospacer
    ********** .***********  ..*

170. spacer 1.37|731647|32|NC_017566|PILER-CR matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 10, identity: 0.688

aagaatctggataaaagacttcatcagttgaa	CRISPR spacer
cagaatctgggtcaaagacttcattaagaatg	Protospacer
 *********.* ***********.*.  . .

171. spacer 1.39|731767|32|NC_017566|PILER-CR matches to MN693068 (Marine virus AFVG_25M252, complete genome) position: , mismatch: 10, identity: 0.688

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
cattgatcgatgcggcagatgaatccattacc	Protospacer
   ..****** ********** ****** .

172. spacer 1.39|731767|32|NC_017566|PILER-CR matches to MN693337 (Marine virus AFVG_25M253, complete genome) position: , mismatch: 10, identity: 0.688

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
cattgatcgatgcggcagatgaatccattacc	Protospacer
   ..****** ********** ****** .

173. spacer 1.47|732247|32|NC_017566|PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.688

cactgcttgtttctgaagattgcggcgttctt	CRISPR spacer
gcgggcttgtttctcgagattgcggcggatct	Protospacer
    ********** .***********  ..*

174. spacer 2.8|1971728|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to KF787095 (Achromobacter phage JWAlpha, complete genome) position: , mismatch: 10, identity: 0.688

aacccgcgccagaaatggaaggttgtacctag	CRISPR spacer
ggccagcgccagaaatggacggttgccacaga	Protospacer
..** ************** *****.  * ..

175. spacer 2.8|1971728|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to KF787094 (Achromobacter phage JWDelta, complete genome) position: , mismatch: 10, identity: 0.688

aacccgcgccagaaatggaaggttgtacctag	CRISPR spacer
ggccagcgccagaaatggacggttgccacaga	Protospacer
..** ************** *****.  * ..

176. spacer 2.9|1971788|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 10, identity: 0.688

tcgcttcattctgcgctcgatgccagtgtaaa	CRISPR spacer
gtgcttcagtctgcgctcgatgacacctcgat	Protospacer
 .****** ************* ** . ..*

177. spacer 2.12|1971968|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to AP014288 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C33, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

gttaccagaattattaatagcagttgttattt	CRISPR spacer
agatccagaaatattaaaagcagttgttgcaa	Protospacer
.   ****** ****** **********..

178. spacer 2.13|1972028|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 10, identity: 0.688

gccagtaattggcatcaacaattgagcatttt	CRISPR spacer
taggagaattggcatcaacatttgagtatatg	Protospacer
   .. ************** *****.** *

179. spacer 2.13|1972028|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 10, identity: 0.688

gccagtaattggcatcaacaattgagcatttt	CRISPR spacer
taggagaattggcatcaacatttgagtatatg	Protospacer
   .. ************** *****.** *

180. spacer 2.13|1972028|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 10, identity: 0.688

gccagtaattggcatcaacaattgagcatttt	CRISPR spacer
taggagaattggcatcaacatttgagtatatg	Protospacer
   .. ************** *****.** *

181. spacer 2.19|1972388|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

agtcagaattaaaataaacgatttaaattggt	CRISPR spacer
ttatattattataataaccgatttaaattgaa	Protospacer
   .*  **** ***** ************.

182. spacer 5.2|2466893|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032053 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence) position: , mismatch: 10, identity: 0.688

tgatcgagtacagcggcattgccgagttaacg	CRISPR spacer
ggatcgagtacagcggcctcgccgccgcgtcc	Protospacer
 **************** *.****   .. *

183. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

184. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcg	Protospacer
 ***.***** *************. . *

185. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

186. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

187. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

188. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

189. spacer 5.6|2467133|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 10, identity: 0.688

agtagcggtttacgctcacccgttggcactat	CRISPR spacer
cgtaacggttgacgctcacccgttactccgcc	Protospacer
 ***.***** *************. . *  .

190. spacer 5.23|2468153|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 10, identity: 0.688

ttgcatgtggtgaaaagtggaaagaccaacaa	CRISPR spacer
atgcaggtggtcaaaagtggaaaggactggtt	Protospacer
 **** ***** ************. * .

191. spacer 5.27|2468393|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN812722 (Vibrio phage NF, complete genome) position: , mismatch: 10, identity: 0.688

tgcaaagatgaccacaaacgttacattctatc	CRISPR spacer
aatgatgatgacgacaaacgctacattcttaa	Protospacer
 ...* ****** *******.********

192. spacer 5.37|2468993|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MH572493 (Microviridae sp. isolate SD_HF_33, complete genome) position: , mismatch: 10, identity: 0.688

accaaacgatcactgataaaaagtttattcaa	CRISPR spacer
gataaaatatcactgataaaaagtttctgatc	Protospacer
. .***  ****************** *

193. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

194. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

195. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

196. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

197. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

198. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

199. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

200. spacer 5.47|2469594|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 10, identity: 0.688

aaaaagaaatgaaatgcaaactaaaacttaaa	CRISPR spacer
gtcaagaaatgaaatccaagctaaaagcgagg	Protospacer
.  ************ ***.****** . *..

201. spacer 5.53|2469954|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022518 (Pantoea vagans strain FBS135 plasmid pPant2, complete sequence) position: , mismatch: 10, identity: 0.688

gcatcggccatttttttaccgtcggttttaaa	CRISPR spacer
actattctcatatttttaccttcggttttaat	Protospacer
.*  .  .*** ******** **********

202. spacer 5.56|2470134|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 10, identity: 0.688

cgctataaaaatcaagcatttcagacaatcga	CRISPR spacer
gaacatataaatcaggcatttcagacacaggt	Protospacer
 . .*** ******.************   *

203. spacer 5.56|2470134|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 10, identity: 0.688

cgctataaaaatcaagcatttcagacaatcga	CRISPR spacer
gaacatataaatcaggcatttcagacacaggt	Protospacer
 . .*** ******.************   *

204. spacer 5.57|2470194|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006590 (Hymenobacter sp. APR13 plasmid pHC, complete sequence) position: , mismatch: 10, identity: 0.688

gagtgaatgcactattactttctatcttagtt	CRISPR spacer
ataatattgcactattcctttgtatcttaggg	Protospacer
. .  * ********* **** ********

205. spacer 5.74|2471215|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MT074138 (Bacteroides phage DAC17, complete genome) position: , mismatch: 10, identity: 0.688

atcaattgagtaaagccctagctcttacacta	CRISPR spacer
agtgattgagtaaagcattagctcttatctct	Protospacer
* ..************ .*********. ..

206. spacer 5.74|2471215|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MT074136 (Bacteroides phage DAC15, complete genome) position: , mismatch: 10, identity: 0.688

atcaattgagtaaagccctagctcttacacta	CRISPR spacer
agtgattgagtaaagcattagctcttatctct	Protospacer
* ..************ .*********. ..

207. spacer 1.6|731405|32|NC_017566|CRISPRCasFinder,CRT matches to MN694188 (Marine virus AFVG_250M625, complete genome) position: , mismatch: 11, identity: 0.656

ccataaatccgaatatattgccatcggtgcga	CRISPR spacer
ccatagatccgaatatattgtcaatcaaatct	Protospacer
*****.**************.** . . ..

208. spacer 1.12|731765|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.656

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
atgccatcgacccggcagatgatctgcaagcg	Protospacer
**** *****.************..     ..

209. spacer 1.12|731765|32|NC_017566|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.656

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
atgccatcgacccggcagatgatctgcaagcg	Protospacer
**** *****.************..     ..

210. spacer 1.33|731407|32|NC_017566|PILER-CR matches to MN694188 (Marine virus AFVG_250M625, complete genome) position: , mismatch: 11, identity: 0.656

ccataaatccgaatatattgccatcggtgcga	CRISPR spacer
ccatagatccgaatatattgtcaatcaaatct	Protospacer
*****.**************.** . . ..

211. spacer 1.39|731767|32|NC_017566|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.656

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
atgccatcgacccggcagatgatctgcaagcg	Protospacer
**** *****.************..     ..

212. spacer 1.39|731767|32|NC_017566|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.656

atgcaatcgatccggcagatgattccatttta	CRISPR spacer
atgccatcgacccggcagatgatctgcaagcg	Protospacer
**** *****.************..     ..

213. spacer 2.3|1971428|32|NC_017566|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046706 (Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence) position: , mismatch: 11, identity: 0.656

taaacattatctgttcgctaactggcacgata	CRISPR spacer
ctggtataatctgtgcgctaactggcactgac	Protospacer
. ...** ****** ************* .

214. spacer 5.27|2468393|32|NC_017566|CRISPRCasFinder,CRT,PILER-CR matches to MN855774 (Myoviridae sp. isolate 278, complete genome) position: , mismatch: 11, identity: 0.656

tgcaaagatgaccacaaacgttacattctatc	CRISPR spacer
caatctcatgaccacaatcgttacatgctact	Protospacer
..     ********** ******** ***..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

69671 : 78190

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014609527.1\|69671_70652_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.5e-10	31.7
WP_014609528.1\|70689_71781_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-97	52.7
WP_014609529.1\|71823_72699_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.4e-109	67.7
WP_014609530.1\|72702_73125_+	WxcM-like domain-containing protein	NA	NA	NA	NA
WP_014609531.1\|73102_73573_+	N-acetyltransferase	NA	NA	NA	NA
WP_014609532.1\|73565_74678_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.1e-42	30.7
WP_014609533.1\|74737_75796_+	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA
WP_014609534.1\|75834_76602_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014609535.1\|76714_77599_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	5.8e-42	39.2
WP_011920285.1\|77644_78190_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-50	57.4

DBSCAN-SWA_2

127722 : 136260

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014609564.1\|127722_129087_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	3.1e-10	25.4
WP_014609565.1\|129079_129775_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	1.1e-06	26.5
WP_014609566.1\|129777_130080_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_041411871.1\|130484_131429_+	hypothetical protein	NA	NA	NA	NA
WP_011920253.1\|131510_131984_+	peroxiredoxin	M1I839	Pelagibacter_phage	5.5e-23	47.4
WP_014609568.1\|132064_134047_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.1e-11	27.9
WP_014609569.1\|134175_135492_-	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	5.4e-12	24.1
WP_011787527.1\|135534_136260_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.3e-31	34.7

DBSCAN-SWA_3

800014 : 846824

Leptospira_phage(20.0%)

integrase,transposase

attL 799803:799832|attR 856535:856564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
799803:799832	attL	NA	NA	NA	NA
WP_014609872.1\|800014_801298_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011790088.1\|801459_802962_-\|transposase	IS66-like element ISShes9 family transposase	S5VTD3	Leptospira_phage	2.0e-79	35.8
WP_011790089.1\|803042_803393_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.3e-18	42.9
WP_014611559.1\|803389_803725_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014609874.1\|805442_806525_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_014609875.1\|806718_807105_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014609876.1\|807253_807874_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_049789521.1\|808104_808443_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014609877.1\|808616_809135_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014609878.1\|809161_809521_+	hypothetical protein	NA	NA	NA	NA
WP_014609879.1\|809793_810150_+	hypothetical protein	NA	NA	NA	NA
WP_014609880.1\|810469_810691_+	hypothetical protein	NA	NA	NA	NA
WP_014609881.1\|810953_811346_+	SirB2 family protein	NA	NA	NA	NA
WP_014609882.1\|811374_812166_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_014609883.1\|812284_813031_+	heme ABC transporter permease	NA	NA	NA	NA
WP_014609884.1\|813030_813267_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_014609885.1\|814244_814484_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014609886.1\|815067_815445_-	hypothetical protein	NA	NA	NA	NA
WP_014609887.1\|817703_817976_-	hypothetical protein	NA	NA	NA	NA
WP_014609889.1\|818561_819473_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_014609890.1\|819469_820051_-	hypothetical protein	NA	NA	NA	NA
WP_014609891.1\|820121_820418_-	hypothetical protein	NA	NA	NA	NA
WP_014609892.1\|821029_823006_+	AAA family ATPase	A0A2H4J1E0	uncultured_Caudovirales_phage	4.8e-28	32.9
WP_014609893.1\|822991_824026_-	hypothetical protein	NA	NA	NA	NA
WP_014609894.1\|824668_824983_-	hypothetical protein	NA	NA	NA	NA
WP_014609895.1\|825254_825464_-	hypothetical protein	NA	NA	NA	NA
WP_014609896.1\|825590_826052_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011787749.1\|826524_826857_-	hypothetical protein	NA	NA	NA	NA
WP_011787748.1\|826882_827413_-	hypothetical protein	NA	NA	NA	NA
WP_011787747.1\|827432_828128_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_014609897.1\|828117_831261_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_014609898.1\|831272_832517_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014609899.1\|832525_833809_-	TolC family protein	NA	NA	NA	NA
WP_014609900.1\|833822_834803_-	M56 family metallopeptidase	NA	NA	NA	NA
WP_014609901.1\|834811_835189_-	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_011787741.1\|835278_835638_+	DUF3147 family protein	NA	NA	NA	NA
WP_014609902.1\|835895_837368_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.4e-127	51.1
WP_014609903.1\|838622_839972_+	group II intron reverse transcriptase/maturase	A0A0N7AE80	Bacillus_phage	1.2e-17	26.7
WP_014609904.1\|840083_840530_-	DUF2846 domain-containing protein	NA	NA	NA	NA
WP_014609905.1\|840865_841825_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.3e-52	39.5
WP_014609906.1\|841934_843191_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.1e-85	40.9
WP_014609907.1\|843191_843599_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	1.5e-21	44.9
WP_014609908.1\|843660_843891_-	hypothetical protein	NA	NA	NA	NA
WP_014609909.1\|843997_844321_-	putative lipoprotein	NA	NA	NA	NA
WP_014609910.1\|844355_844925_-	hypothetical protein	NA	NA	NA	NA
WP_041411916.1\|844978_845191_-	hypothetical protein	NA	NA	NA	NA
WP_011840012.1\|845664_845955_+\|transposase	IS3 family transposase	Q716C1	Shigella_phage	5.4e-05	37.2
WP_011840011.1\|846014_846824_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-44	35.1
856535:856564	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1603303 : 1614196

uncultured_virus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014610245.1\|1603303_1605538_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.0e-92	34.7
WP_025007472.1\|1605909_1607478_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.5e-56	28.0
WP_014610247.1\|1607584_1608118_-	hypothetical protein	A0A1W6JNX6	Morganella_phage	1.0e-46	50.9
WP_014610248.1\|1608287_1610963_-	FAD-binding protein	A0A0B5JBT9	Pandoravirus	1.1e-24	39.5
WP_014610249.1\|1611069_1612089_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.2e-12	30.1
WP_014610250.1\|1613161_1614196_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	3.1e-10	23.4

DBSCAN-SWA_5

2106485 : 2116602

Faustovirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014610488.1\|2106485_2107700_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	32.4
WP_011789190.1\|2107738_2108122_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.2e-51	76.6
WP_011789191.1\|2108136_2108460_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	8.3e-23	46.3
WP_011789192.1\|2108476_2109001_+	co-chaperone HscB	NA	NA	NA	NA
WP_014610489.1\|2109069_2110932_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.1e-103	38.8
WP_011789194.1\|2110940_2111279_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011789195.1\|2111437_2112343_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_011789196.1\|2112413_2112611_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_014610490.1\|2112841_2113009_+	hypothetical protein	NA	NA	NA	NA
WP_011789197.1\|2113206_2113638_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_011789198.1\|2113875_2114319_+	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	2.4e-20	49.5
WP_011789199.1\|2114389_2114884_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_014610491.1\|2114883_2116602_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.2e-55	29.3

DBSCAN-SWA_6

2278804 : 2290064

uncultured_Caudovirales_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014610566.1\|2278804_2281495_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	8.3e-84	48.5
WP_014610567.1\|2281571_2282198_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_014610568.1\|2282206_2283538_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.4e-78	39.4
WP_011789326.1\|2283530_2283905_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	6.3e-06	37.0
WP_014610569.1\|2283923_2285210_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-99	45.5
WP_011789328.1\|2285227_2285350_+	hypothetical protein	NA	NA	NA	NA
WP_011789329.1\|2285445_2285784_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_011789330.1\|2285777_2286059_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_011789331.1\|2286058_2286415_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_011789332.1\|2286429_2286819_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.1e-20	41.7
WP_011789333.1\|2286879_2287539_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-33	43.4
WP_014610570.1\|2287771_2288674_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014610571.1\|2288789_2290064_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	7.3e-14	23.8

DBSCAN-SWA_7

2883417 : 2952846

Acinetobacter_phage(14.29%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011788863.1\|2883417_2884542_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.3e-94	47.8
WP_011919550.1\|2884701_2885739_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_011788861.1\|2885795_2886014_-	hypothetical protein	NA	NA	NA	NA
WP_014610845.1\|2886120_2886735_+	DUF479 domain-containing protein	NA	NA	NA	NA
WP_011919552.1\|2886946_2887618_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_011788858.1\|2887674_2888109_-	hypothetical protein	NA	NA	NA	NA
WP_014610846.1\|2888431_2889811_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_014610847.1\|2889873_2890398_-	CIA30 family protein	NA	NA	NA	NA
WP_014610848.1\|2890474_2891698_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_011788854.1\|2891851_2892751_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.8e-27	28.3
WP_011788853.1\|2892882_2893353_-	protein phosphatase	NA	NA	NA	NA
WP_014610849.1\|2893417_2894701_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.4e-42	28.1
WP_014610850.1\|2894748_2895306_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	7.9e-21	55.4
WP_014610851.1\|2895366_2897058_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_041412019.1\|2897225_2897534_+\|transposase	transposase	NA	NA	NA	NA
WP_041412022.1\|2897593_2898403_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.8e-43	34.7
WP_014610852.1\|2898614_2902343_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_014610853.1\|2902320_2903601_-	radical SAM protein	NA	NA	NA	NA
WP_014610854.1\|2903597_2904395_-	taurine catabolism dioxygenase tauD/tfdA	NA	NA	NA	NA
WP_014610855.1\|2904397_2904898_-	hypothetical protein	NA	NA	NA	NA
WP_014610856.1\|2905265_2907095_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-29	29.2
WP_014610857.1\|2909342_2910752_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_041412025.1\|2911977_2912169_-	hypothetical protein	NA	NA	NA	NA
WP_014610858.1\|2912395_2913418_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_014610859.1\|2913480_2914125_+	TRAP transporter small permease	NA	NA	NA	NA
WP_014610860.1\|2914124_2915522_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_011788844.1\|2915633_2917445_+	sensor histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	1.4e-05	29.9
WP_011788843.1\|2917441_2918821_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_014610861.1\|2918927_2921999_-	penicillin-binding protein	NA	NA	NA	NA
WP_011788841.1\|2922101_2922680_-	thymidine kinase	A0A191ZC13	Erwinia_phage	4.3e-54	54.5
WP_014610862.1\|2923222_2925325_+	cytochrome c	NA	NA	NA	NA
WP_011788839.1\|2925525_2927679_+	M3 family metallopeptidase	A0A1V0SIU1	Klosneuvirus	5.2e-20	21.4
WP_011919562.1\|2927750_2929319_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_014610863.1\|2929691_2930618_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_011788836.1\|2930618_2931368_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_011788835.1\|2931680_2932073_+	H-NS histone family protein	NA	NA	NA	NA
WP_041412028.1\|2932252_2932447_-	hypothetical protein	NA	NA	NA	NA
WP_001206290.1\|2932562_2933771_+\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4
WP_041412030.1\|2933767_2934526_+	hypothetical protein	NA	NA	NA	NA
WP_001206290.1\|2934564_2935773_+\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4
WP_049789537.1\|2935809_2938053_+	amidohydrolase family protein	NA	NA	NA	NA
WP_014610864.1\|2938052_2939369_+	amidohydrolase family protein	NA	NA	NA	NA
WP_014610865.1\|2939445_2939826_+	hypothetical protein	NA	NA	NA	NA
WP_014610866.1\|2939964_2940699_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_014610867.1\|2940699_2941329_+	acyltransferase	NA	NA	NA	NA
WP_014610868.1\|2941535_2943251_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_014610869.1\|2943393_2944518_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_014610870.1\|2945001_2945250_+	hypothetical protein	NA	NA	NA	NA
WP_014610871.1\|2945397_2946108_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_014610872.1\|2946116_2946902_+	hypothetical protein	NA	NA	NA	NA
WP_014610873.1\|2946901_2949271_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_014610874.1\|2949379_2950474_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_014610875.1\|2950507_2951047_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.2e-47	51.4
WP_011840011.1\|2951686_2952496_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-44	35.1
WP_011840012.1\|2952555_2952846_-\|transposase	IS3 family transposase	Q716C1	Shigella_phage	5.4e-05	37.2

DBSCAN-SWA_8

2961837 : 3047674

107

Bluetongue_virus(11.11%)

integrase,transposase

attL 2963841:2963900|attR 3034266:3034285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011840011.1\|2961837_2962647_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-44	35.1
WP_011840012.1\|2962706_2962997_-\|transposase	IS3 family transposase	Q716C1	Shigella_phage	5.4e-05	37.2
WP_049789539.1\|2963011_2963341_-	hypothetical protein	NA	NA	NA	NA
WP_049789540.1\|2963527_2963779_+	hypothetical protein	NA	NA	NA	NA
2963841:2963900	attL	NA	NA	NA	NA
WP_001206290.1\|2963918_2965127_-\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4
2963841:2963900	attL	NA	NA	NA	NA
WP_014610885.1\|2965834_2966848_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.0e-92	49.9
WP_041412037.1\|2967423_2967858_-	hypothetical protein	A0A218MNI5	uncultured_virus	5.2e-36	72.3
WP_041412039.1\|2967990_2968497_+	mobile mystery protein A	NA	NA	NA	NA
WP_014610886.1\|2968532_2969822_-\|transposase	ISL3-like element ISPpu12 family transposase	A0A2D1GQC1	Lysinibacillus_phage	4.7e-85	40.2
WP_003821921.1\|2969843_2970356_-	signal peptidase II	NA	NA	NA	NA
WP_004364974.1\|2970359_2971256_-	cation transporter	NA	NA	NA	NA
WP_004364961.1\|2971351_2971759_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_014610887.1\|2971855_2972467_+	mobile mystery protein B	NA	NA	NA	NA
WP_049789541.1\|2972527_2972782_+	hypothetical protein	NA	NA	NA	NA
WP_014610888.1\|2972866_2973121_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_014610889.1\|2973117_2973459_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_014610890.1\|2973622_2974015_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014610891.1\|2973999_2975367_-	phosphatidylinositol kinase	NA	NA	NA	NA
WP_014610892.1\|2975721_2976039_-	CcdB family protein	NA	NA	NA	NA
WP_014610893.1\|2976038_2976284_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_041412043.1\|2976864_2977047_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_014610895.1\|2977759_2978677_-	hypothetical protein	NA	NA	NA	NA
WP_014610896.1\|2978885_2979155_+	hypothetical protein	NA	NA	NA	NA
WP_014610897.1\|2979351_2980908_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_049789542.1\|2980897_2981653_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.3e-36	34.8
WP_014610899.1\|2981642_2982131_+	DnaG primase-like protein	NA	NA	NA	NA
WP_014610900.1\|2982111_2983086_+\|integrase	tyrosine-type recombinase/integrase	A0A142K830	Mycobacterium_phage	3.3e-14	27.0
WP_014610901.1\|2983158_2983455_+	hypothetical protein	NA	NA	NA	NA
WP_014610902.1\|2983464_2984058_+	hypothetical protein	NA	NA	NA	NA
WP_014610903.1\|2984105_2984705_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_014610904.1\|2984705_2985131_+	hypothetical protein	NA	NA	NA	NA
WP_006087376.1\|2985481_2985817_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_006087375.1\|2985816_2986062_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_011979512.1\|2986258_2986660_-	hypothetical protein	NA	NA	NA	NA
WP_041412050.1\|2987323_2987782_+\|transposase	transposase	NA	NA	NA	NA
WP_014610905.1\|2988058_2988388_-	mRNA-degrading endonuclease	Q708N9	Streptococcus_phage	3.8e-07	51.0
WP_014610906.1\|2988387_2988642_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014610907.1\|2988913_2989213_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014610908.1\|2989205_2989448_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_014610909.1\|2989534_2989768_-	HipA protein	NA	NA	NA	NA
WP_014610910.1\|2989760_2990087_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049789543.1\|2990721_2991903_-\|transposase	transposase	A0A068A1P5	Thermus_phage	2.3e-38	35.4
WP_014610912.1\|2991960_2992374_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.0e-25	41.4
WP_014610913.1\|2992471_2994193_-	potassium/proton antiporter	NA	NA	NA	NA
WP_014610914.1\|2994702_2995620_-\|transposase	IS5-like element ISSpu16 family transposase	A0A1V0E8E1	Vibrio_phage	1.1e-96	56.9
WP_008114006.1\|2995702_2995945_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.5e-16	56.2
WP_024606882.1\|2996391_2996598_+	hypothetical protein	NA	NA	NA	NA
WP_041412056.1\|2996685_2996889_+	hypothetical protein	NA	NA	NA	NA
WP_014609561.1\|2996866_2997898_-\|transposase	IS630-like element ISSpu23 family transposase	NA	NA	NA	NA
WP_008114000.1\|2998005_2998296_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_008113998.1\|2998297_2998537_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_014610915.1\|2998879_3000106_-\|transposase	transposase	A0A077SL42	Escherichia_phage	7.5e-32	29.6
WP_049789544.1\|3000214_3000454_+\|transposase	IS200/IS605 family transposase	A0A1S5RG20	Helicobacter_phage	2.4e-11	39.7
WP_014610916.1\|3001016_3002225_+\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	1.5e-170	71.1
WP_014610917.1\|3002281_3002461_-	CCGSCS motif protein	NA	NA	NA	NA
WP_014610918.1\|3003834_3004575_+	hypothetical protein	NA	NA	NA	NA
3004207:3004271	attR	NA	NA	NA	NA
WP_011074401.1\|3004705_3004948_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
3004207:3004271	attR	NA	NA	NA	NA
WP_014610919.1\|3005147_3005783_+	recombinase family protein	NA	NA	NA	NA
WP_014610920.1\|3007196_3007559_+	hypothetical protein	NA	NA	NA	NA
WP_014610921.1\|3008258_3008495_+	hypothetical protein	NA	NA	NA	NA
WP_014610922.1\|3008494_3010132_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014610923.1\|3010097_3013046_+	hypothetical protein	NA	NA	NA	NA
WP_014610924.1\|3013053_3014568_+	hypothetical protein	NA	NA	NA	NA
WP_014610925.1\|3014970_3016137_+	DUF3596 domain-containing protein	A0A0P0ZGA8	Escherichia_phage	1.1e-19	24.3
WP_014610926.1\|3016210_3016936_+	ATPase AAA	NA	NA	NA	NA
WP_014610885.1\|3017447_3018461_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.0e-92	49.9
WP_049789545.1\|3019016_3019466_-\|transposase	transposase	A0A218MNI5	uncultured_virus	4.1e-44	70.8
WP_014610927.1\|3019598_3020087_+	mobile mystery protein A	NA	NA	NA	NA
WP_014610928.1\|3020083_3020695_+	mobile mystery protein B	NA	NA	NA	NA
WP_049789546.1\|3020755_3021007_+	hypothetical protein	NA	NA	NA	NA
WP_014610888.1\|3021091_3021346_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_014610929.1\|3021342_3021684_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_014610890.1\|3021847_3022240_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014610930.1\|3022224_3023592_-	phosphatidylinositol kinase	NA	NA	NA	NA
WP_014610892.1\|3023946_3024264_-	CcdB family protein	NA	NA	NA	NA
WP_014610893.1\|3024263_3024509_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_041412043.1\|3025091_3025274_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_014610931.1\|3025538_3026789_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_014610932.1\|3026785_3027103_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041412063.1\|3027374_3027659_+\|transposase	transposase	NA	NA	NA	NA
WP_041412361.1\|3027709_3028117_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.8e-13	35.6
WP_041412050.1\|3028169_3028628_+\|transposase	transposase	NA	NA	NA	NA
WP_014610933.1\|3028904_3029234_-	mRNA-degrading endonuclease	Q708N9	Streptococcus_phage	3.8e-07	51.0
WP_041412362.1\|3029233_3029488_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014610935.1\|3029759_3030059_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014610908.1\|3030051_3030294_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_049789547.1\|3030368_3030740_+	DUF3596 domain-containing protein	NA	NA	NA	NA
WP_049789548.1\|3030739_3031015_+	hypothetical protein	NA	NA	NA	NA
WP_014610936.1\|3031007_3031376_-	DNA-binding protein	A0A0P0ZCT8	Stx2-converting_phage	6.8e-21	47.4
WP_014610937.1\|3031386_3031686_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	2.2e-14	45.2
WP_014610938.1\|3032000_3032285_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014610939.1\|3032274_3032514_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_041412066.1\|3032629_3033286_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.6e-33	39.5
WP_014610940.1\|3033361_3033676_+	hypothetical protein	NA	NA	NA	NA
WP_014610941.1\|3033666_3034083_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_014610942.1\|3034550_3034757_+	hypothetical protein	NA	NA	NA	NA
WP_041412068.1\|3034876_3036085_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_014610944.1\|3036312_3036660_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014610945.1\|3036661_3036922_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014610946.1\|3037300_3038653_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_014610947.1\|3038748_3039810_-	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_014610948.1\|3039954_3041028_-	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_014610950.1\|3041561_3042728_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	4.0e-115	57.1
WP_014610952.1\|3043044_3044049_-	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	7.1e-12	30.7
WP_049789549.1\|3045658_3045868_-	hypothetical protein	NA	NA	NA	NA
WP_041412070.1\|3046096_3046369_-	hypothetical protein	NA	NA	NA	NA
WP_001206290.1\|3046465_3047674_-\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4

DBSCAN-SWA_9

3253152 : 3264150

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014611058.1\|3253152_3255777_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.6e-79	38.9
WP_014611059.1\|3256117_3256531_-	regulatory protein RecX	NA	NA	NA	NA
WP_011788615.1\|3256605_3257679_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.1e-111	62.2
WP_014611060.1\|3258062_3260633_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.2e-31	23.0
WP_014611061.1\|3261791_3262676_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	6.9e-11	31.9
WP_014611062.1\|3262768_3263404_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.1e-34	50.0
WP_011788610.1\|3263400_3264150_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-71	52.7

DBSCAN-SWA_10

3296166 : 3303634

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007646164.1\|3296166_3296643_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.1e-30	47.0
WP_011788587.1\|3296775_3297879_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.0e-69	40.0
WP_011919711.1\|3297944_3298601_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.3e-27	34.5
WP_014611081.1\|3298612_3299767_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.7e-52	35.7
WP_011788584.1\|3299874_3300324_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_041412096.1\|3300311_3300527_+	hypothetical protein	NA	NA	NA	NA
WP_011919713.1\|3300523_3301777_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.7e-101	53.4
WP_011788582.1\|3301966_3303634_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	2.5e-38	27.9

DBSCAN-SWA_11

3655063 : 3721810

Tupanvirus(12.5%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014609561.1\|3655063_3656095_+\|transposase	IS630-like element ISSpu23 family transposase	NA	NA	NA	NA
WP_011919917.1\|3656168_3656792_-	hypothetical protein	NA	NA	NA	NA
WP_011919918.1\|3657287_3657749_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011788205.1\|3658263_3658467_-	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_014611256.1\|3658720_3660631_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	6.8e-72	32.2
WP_014611257.1\|3660675_3661137_+	DUF2390 domain-containing protein	NA	NA	NA	NA
WP_011788202.1\|3661174_3661585_-	GFA family protein	NA	NA	NA	NA
WP_041412379.1\|3661586_3663197_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_011788200.1\|3663265_3663772_-	hypothetical protein	NA	NA	NA	NA
WP_041412137.1\|3663881_3664910_+	hydrolase	NA	NA	NA	NA
WP_011788198.1\|3664893_3665139_+	YheU family protein	NA	NA	NA	NA
WP_011788197.1\|3665229_3666117_+	phosphoribulokinase	NA	NA	NA	NA
WP_041408318.1\|3666580_3667090_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011788195.1\|3667312_3668605_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	3.9e-31	33.5
WP_014611261.1\|3668789_3669494_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_007644947.1\|3669657_3670101_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_014611262.1\|3670277_3671177_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_014611263.1\|3671292_3672777_+	polynucleotide adenylyltransferase PcnB	G3MAR3	Bacillus_virus	6.7e-27	36.7
WP_011788191.1\|3672776_3673259_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_011788190.1\|3673322_3674117_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_014611264.1\|3674169_3675015_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_014611265.1\|3675227_3675755_+	hypothetical protein	NA	NA	NA	NA
WP_011788187.1\|3676077_3676497_+	curlin	NA	NA	NA	NA
WP_014611266.1\|3676511_3678002_+	curlin	NA	NA	NA	NA
WP_014611267.1\|3678170_3678836_-	response regulator transcription factor	NA	NA	NA	NA
WP_011788184.1\|3679229_3679838_-	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_011788183.1\|3679992_3681222_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	1.1e-107	49.6
WP_014611268.1\|3681372_3682329_+\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_014609977.1\|3682378_3683701_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_011788181.1\|3683822_3684839_-	two-component system response regulator	W8CYM9	Bacillus_phage	1.3e-10	32.1
WP_014611269.1\|3684996_3690309_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.9e-80	35.8
WP_014611270.1\|3690441_3691800_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_025007561.1\|3691945_3692263_-	hypothetical protein	NA	NA	NA	NA
WP_011788178.1\|3692541_3693213_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-24	35.7
WP_014611271.1\|3693209_3695846_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_014611272.1\|3695842_3697054_+	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_011788175.1\|3697377_3697647_+	chaperone NapD	NA	NA	NA	NA
WP_011788174.1\|3697643_3700124_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_014611273.1\|3700177_3700912_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_014611274.1\|3700908_3701880_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_014611275.1\|3701876_3702308_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_014609977.1\|3702528_3703851_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_014611276.1\|3703938_3704091_-	hypothetical protein	NA	NA	NA	NA
WP_011788169.1\|3704184_3705072_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014611277.1\|3705227_3707321_-	elongation factor G	E4ZFJ7	Streptococcus_phage	2.2e-60	28.3
WP_014609696.1\|3707954_3709340_+\|transposase	IS4-like element ISSpu12 family transposase	NA	NA	NA	NA
WP_014611278.1\|3709392_3713946_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_011788166.1\|3714067_3714979_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014611279.1\|3715059_3715872_-	class D beta-lactamase	NA	NA	NA	NA
WP_014611280.1\|3716199_3717354_+	hypothetical protein	NA	NA	NA	NA
WP_014611281.1\|3717512_3718172_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_014611282.1\|3718865_3719603_+	HNH endonuclease	NA	NA	NA	NA
WP_014611283.1\|3720505_3721810_-\|transposase	IS1380-like element ISSpu19 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

3727754 : 3748720

Stx2-converting_phage(33.33%)

integrase,protease,transposase

attL 3733468:3733527|attR 3738187:3739403

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049789569.1\|3727754_3729257_-\|transposase	IS66-like element ISSpu24 family transposase	A0A0P0ZBS5	Stx2-converting_phage	4.2e-117	46.0
WP_014611285.1\|3729371_3729719_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.9e-33	62.6
WP_014611286.1\|3729715_3730123_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014611287.1\|3730467_3730872_-	hypothetical protein	NA	NA	NA	NA
WP_014611288.1\|3730868_3732938_-\|integrase	integrase	NA	NA	NA	NA
WP_041412146.1\|3732934_3733417_-	hypothetical protein	NA	NA	NA	NA
3733468:3733527	attL	NA	NA	NA	NA
WP_011840012.1\|3733515_3733806_+\|transposase	IS3 family transposase	Q716C1	Shigella_phage	5.4e-05	37.2
WP_011840011.1\|3733865_3734675_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-44	35.1
WP_014609561.1\|3735259_3736291_+\|transposase	IS630-like element ISSpu23 family transposase	NA	NA	NA	NA
WP_041412149.1\|3736282_3737194_-	hypothetical protein	NA	NA	NA	NA
WP_041412151.1\|3737193_3738186_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011840012.1\|3738234_3738525_+\|transposase	IS3 family transposase	Q716C1	Shigella_phage	5.4e-05	37.2
WP_011840011.1\|3738584_3739394_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-44	35.1
WP_041412154.1\|3739370_3739889_-	hypothetical protein	NA	NA	NA	NA
3738187:3739403	attR	NA	NA	NA	NA
WP_014611289.1\|3740320_3741052_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_014611290.1\|3741116_3742070_+	glutathione synthase	NA	NA	NA	NA
WP_011788159.1\|3742156_3743479_+	alkaline phosphatase	NA	NA	NA	NA
WP_014611291.1\|3743630_3744674_+	methyltransferase	NA	NA	NA	NA
WP_014611292.1\|3745101_3746790_+	DUF342 domain-containing protein	NA	NA	NA	NA
WP_011788156.1\|3746958_3747336_+	hypothetical protein	NA	NA	NA	NA
WP_011919927.1\|3747583_3748720_+\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_13

4200341 : 4234477

Vibrio_phage(26.92%)

head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014611507.1\|4200341_4207070_-	membrane protein	A0A2L0V157	Salmonella_phage	8.5e-77	32.1
WP_049789555.1\|4207054_4207459_-	hypothetical protein	NA	NA	NA	NA
WP_014611509.1\|4207463_4208087_-	hypothetical protein	A0A2L0V147	Salmonella_phage	1.6e-30	37.2
WP_014611510.1\|4208083_4208686_-	hypothetical protein	S4TSP7	Salmonella_phage	1.8e-23	36.4
WP_014611511.1\|4208784_4211652_-	tape measure protein	I6P8E3	Pseudomonas_phage	4.6e-48	33.3
WP_014611512.1\|4211982_4212312_-	hypothetical protein	NA	NA	NA	NA
WP_014611513.1\|4212320_4213229_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	4.4e-37	37.2
WP_014611514.1\|4213233_4213644_-	hypothetical protein	NA	NA	NA	NA
WP_014611515.1\|4213640_4214060_-	DUF1320 domain-containing protein	C9DGP4	Escherichia_phage	1.5e-19	41.5
WP_014611516.1\|4214062_4214578_-	termination factor Rho	NA	NA	NA	NA
WP_014611517.1\|4214648_4215551_-\|head	head protein	A0SMP3	Pseudomonas_virus	1.4e-88	54.5
WP_014611518.1\|4215558_4216707_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	1.2e-42	39.5
WP_014611519.1\|4216992_4217451_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	3.6e-11	33.6
WP_014611520.1\|4217546_4218791_-\|head	head morphogenesis protein SPP1 gp7	J9STS2	Pseudomonas_phage	4.6e-53	46.6
WP_014611521.1\|4218790_4220350_-	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	1.3e-113	44.7
WP_014611522.1\|4220349_4222011_-	hypothetical protein	M1NVQ0	Vibrio_phage	2.3e-164	60.1
WP_014611523.1\|4222010_4222580_-	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	9.1e-49	58.6
WP_014611524.1\|4222582_4222879_-	helix-turn-helix transcriptional regulator	A0A2I7S9D8	Vibrio_phage	3.3e-18	53.1
WP_014611525.1\|4222878_4223214_-	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_014611526.1\|4223210_4223423_-	hypothetical protein	A0A0H5ARI0	Pseudomonas_phage	1.3e-05	45.6
WP_014611527.1\|4223507_4224077_-	hypothetical protein	NA	NA	NA	NA
WP_014611528.1\|4224073_4224646_-	lysozyme	A0A0A1I5L5	Burkholderia_phage	2.1e-24	45.2
WP_014611529.1\|4224635_4224932_-	hypothetical protein	NA	NA	NA	NA
WP_014611530.1\|4225010_4225457_-	hypothetical protein	NA	NA	NA	NA
WP_014611531.1\|4225568_4226015_-	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	9.7e-14	38.1
WP_014611532.1\|4226004_4226535_-	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	7.0e-27	45.2
WP_014611533.1\|4226531_4227116_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	6.1e-16	38.6
WP_014611534.1\|4227115_4227334_-	hypothetical protein	NA	NA	NA	NA
WP_014611535.1\|4227432_4227891_-	hypothetical protein	M4MHH2	Vibrio_phage	2.0e-38	55.9
WP_041412216.1\|4227902_4228100_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_014611537.1\|4228193_4228826_-	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	5.9e-57	53.3
WP_014611538.1\|4228836_4229115_-	hypothetical protein	NA	NA	NA	NA
WP_014611539.1\|4229126_4229372_-	hypothetical protein	NA	NA	NA	NA
WP_014611540.1\|4229374_4229587_-	hypothetical protein	NA	NA	NA	NA
WP_041412219.1\|4229629_4230610_-	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	2.1e-93	63.2
WP_014611542.1\|4230655_4232653_-\|transposase	transposase	M4M9R2	Vibrio_phage	5.2e-208	53.6
WP_014611543.1\|4232649_4233135_-	hypothetical protein	Q6QID6	Burkholderia_phage	3.4e-44	52.3
WP_014611544.1\|4233255_4233558_-	transcriptional regulator	A0A2P9JZG5	Alteromonadaceae_phage	1.7e-14	46.7
WP_014611545.1\|4233718_4234477_+	helix-turn-helix domain-containing protein	A0A2I7S9A5	Vibrio_phage	3.1e-60	46.1

DBSCAN-SWA_14

4382925 : 4450456

Vibrio_phage(23.33%)

head,integrase,transposase

attL 4395710:4395726|attR 4437843:4437859

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014611683.1\|4382925_4383591_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014611684.1\|4383782_4384526_+	hypothetical protein	NA	NA	NA	NA
WP_014611686.1\|4384766_4385057_+	hypothetical protein	NA	NA	NA	NA
WP_014611687.1\|4385067_4385400_+	hypothetical protein	NA	NA	NA	NA
WP_041412250.1\|4385592_4385838_+	hypothetical protein	NA	NA	NA	NA
WP_014611690.1\|4385865_4386201_+	hypothetical protein	NA	NA	NA	NA
WP_041412253.1\|4386408_4386852_+	hypothetical protein	NA	NA	NA	NA
WP_011918360.1\|4386943_4387285_-	hypothetical protein	NA	NA	NA	NA
WP_041412255.1\|4387294_4387492_-	hypothetical protein	NA	NA	NA	NA
WP_014611693.1\|4387791_4388022_+	hypothetical protein	NA	NA	NA	NA
WP_014611694.1\|4388653_4389007_-	YnfA family protein	A0A218MNG8	uncultured_virus	4.6e-27	57.1
WP_011918390.1\|4388981_4389890_-	cation transporter	NA	NA	NA	NA
WP_011918389.1\|4389921_4390386_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_014611696.1\|4390408_4391314_+	cation transporter	NA	NA	NA	NA
WP_011918387.1\|4391367_4391733_+	hypothetical protein	NA	NA	NA	NA
WP_014611697.1\|4391784_4393029_+	TolC family protein	NA	NA	NA	NA
WP_014611698.1\|4393107_4394154_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014611699.1\|4394163_4397286_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
4395710:4395726	attL	NA	NA	NA	NA
WP_014611700.1\|4397351_4397771_-	DUF3703 domain-containing protein	NA	NA	NA	NA
WP_049789559.1\|4397987_4398395_-	hypothetical protein	NA	NA	NA	NA
WP_011919306.1\|4398419_4398935_-	hypothetical protein	NA	NA	NA	NA
WP_014611701.1\|4398935_4399211_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014611702.1\|4399479_4400652_+	DNA-binding protein	NA	NA	NA	NA
WP_014611703.1\|4401057_4401546_+	PaaI family thioesterase	NA	NA	NA	NA
WP_014611704.1\|4401542_4402034_+	PaaI family thioesterase	NA	NA	NA	NA
WP_014611705.1\|4402140_4403223_-	aldo/keto reductase	NA	NA	NA	NA
WP_014611706.1\|4403298_4403883_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007103158.1\|4403927_4404596_-	cupin	NA	NA	NA	NA
WP_007103157.1\|4404643_4405264_-	glutathione S-transferase	NA	NA	NA	NA
WP_014611707.1\|4405512_4406064_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	5.1e-12	35.6
WP_040291333.1\|4407934_4408396_-\|transposase	transposase	A0A193DTP9	Autographa_californica_nuclear_polyhedrosis_virus	3.1e-15	40.0
WP_008983524.1\|4408584_4409022_-	hypothetical protein	NA	NA	NA	NA
WP_008983523.1\|4409164_4409389_-	hypothetical protein	NA	NA	NA	NA
WP_041408180.1\|4409576_4410347_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.6e-48	44.2
WP_014611708.1\|4411456_4411804_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014611709.1\|4411805_4412063_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014611710.1\|4412224_4412857_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014611712.1\|4413795_4414266_+	hypothetical protein	NA	NA	NA	NA
WP_014611714.1\|4415047_4415383_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011918371.1\|4415379_4415667_+	transcriptional regulator	NA	NA	NA	NA
WP_014611506.1\|4415861_4416278_-	hypothetical protein	NA	NA	NA	NA
WP_014611507.1\|4416320_4423049_-	membrane protein	A0A2L0V157	Salmonella_phage	8.5e-77	32.1
WP_049789555.1\|4423033_4423438_-	hypothetical protein	NA	NA	NA	NA
WP_014611509.1\|4423442_4424066_-	hypothetical protein	A0A2L0V147	Salmonella_phage	1.6e-30	37.2
WP_014611510.1\|4424062_4424665_-	hypothetical protein	S4TSP7	Salmonella_phage	1.8e-23	36.4
WP_014611511.1\|4424763_4427631_-	tape measure protein	I6P8E3	Pseudomonas_phage	4.6e-48	33.3
WP_014611512.1\|4427961_4428291_-	hypothetical protein	NA	NA	NA	NA
WP_014611513.1\|4428299_4429208_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	4.4e-37	37.2
WP_014611514.1\|4429212_4429623_-	hypothetical protein	NA	NA	NA	NA
WP_014611515.1\|4429619_4430039_-	DUF1320 domain-containing protein	C9DGP4	Escherichia_phage	1.5e-19	41.5
WP_014611516.1\|4430041_4430557_-	termination factor Rho	NA	NA	NA	NA
WP_014611517.1\|4430627_4431530_-\|head	head protein	A0SMP3	Pseudomonas_virus	1.4e-88	54.5
WP_014611518.1\|4431537_4432686_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	1.2e-42	39.5
WP_014611519.1\|4432971_4433430_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	3.6e-11	33.6
WP_014611520.1\|4433525_4434770_-\|head	head morphogenesis protein SPP1 gp7	J9STS2	Pseudomonas_phage	4.6e-53	46.6
WP_014611521.1\|4434769_4436329_-	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	1.3e-113	44.7
WP_014611522.1\|4436328_4437990_-	hypothetical protein	M1NVQ0	Vibrio_phage	2.3e-164	60.1
4437843:4437859	attR	NA	NA	NA	NA
WP_014611523.1\|4437989_4438559_-	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	9.1e-49	58.6
WP_014611524.1\|4438561_4438858_-	helix-turn-helix transcriptional regulator	A0A2I7S9D8	Vibrio_phage	3.3e-18	53.1
WP_014611525.1\|4438857_4439193_-	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_014611526.1\|4439189_4439402_-	hypothetical protein	A0A0H5ARI0	Pseudomonas_phage	1.3e-05	45.6
WP_014611527.1\|4439486_4440056_-	hypothetical protein	NA	NA	NA	NA
WP_014611528.1\|4440052_4440625_-	lysozyme	A0A0A1I5L5	Burkholderia_phage	2.1e-24	45.2
WP_014611529.1\|4440614_4440911_-	hypothetical protein	NA	NA	NA	NA
WP_014611530.1\|4440989_4441436_-	hypothetical protein	NA	NA	NA	NA
WP_014611531.1\|4441547_4441994_-	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	9.7e-14	38.1
WP_014611532.1\|4441983_4442514_-	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	7.0e-27	45.2
WP_014611533.1\|4442510_4443095_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	6.1e-16	38.6
WP_014611534.1\|4443094_4443313_-	hypothetical protein	NA	NA	NA	NA
WP_014611535.1\|4443411_4443870_-	hypothetical protein	M4MHH2	Vibrio_phage	2.0e-38	55.9
WP_041412216.1\|4443881_4444079_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_014611537.1\|4444172_4444805_-	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	5.9e-57	53.3
WP_014611538.1\|4444815_4445094_-	hypothetical protein	NA	NA	NA	NA
WP_014611539.1\|4445105_4445351_-	hypothetical protein	NA	NA	NA	NA
WP_014611540.1\|4445353_4445566_-	hypothetical protein	NA	NA	NA	NA
WP_041412219.1\|4445608_4446589_-	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	2.1e-93	63.2
WP_014611542.1\|4446634_4448632_-\|transposase	transposase	M4M9R2	Vibrio_phage	5.2e-208	53.6
WP_014611543.1\|4448628_4449114_-	hypothetical protein	Q6QID6	Burkholderia_phage	3.4e-44	52.3
WP_014611544.1\|4449234_4449537_-	transcriptional regulator	A0A2P9JZG5	Alteromonadaceae_phage	1.7e-14	46.7
WP_014611545.1\|4449697_4450456_+	helix-turn-helix domain-containing protein	A0A2I7S9A5	Vibrio_phage	3.1e-60	46.1

DBSCAN-SWA_15

4666333 : 4804672

118

Leptospira_phage(16.0%)

integrase,tRNA,transposase

attL 4657344:4657359|attR 4805354:4805371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4657344:4657359	attL	NA	NA	NA	NA
WP_014610306.1\|4666333_4666597_-\|transposase	transposase	NA	NA	NA	NA
4657344:4657359	attL	NA	NA	NA	NA
WP_014610305.1\|4666615_4668283_-\|transposase	IS66-like element ISSpu21 family transposase	NA	NA	NA	NA
WP_014610304.1\|4668304_4668655_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_014610303.1\|4668654_4668936_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011791220.1\|4669596_4671093_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_011791222.1\|4672233_4673481_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.3e-95	47.0
WP_041412435.1\|4673606_4675139_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	4.3e-85	39.3
WP_014611814.1\|4675200_4676868_-	urocanate hydratase	NA	NA	NA	NA
WP_014611815.1\|4677022_4677730_-	histidine utilization repressor	NA	NA	NA	NA
WP_011918294.1\|4677949_4679176_+	imidazolonepropionase	NA	NA	NA	NA
WP_014611816.1\|4679273_4680026_-	siderophore-interacting protein	NA	NA	NA	NA
WP_011791228.1\|4680107_4680539_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011918292.1\|4680705_4681062_-	hypothetical protein	NA	NA	NA	NA
WP_014611817.1\|4681176_4681713_-	hypothetical protein	NA	NA	NA	NA
WP_041412271.1\|4681942_4682287_-	hypothetical protein	NA	NA	NA	NA
WP_014611819.1\|4682446_4684270_+	glycerophosphodiester phosphodiesterase	M1HUL1	Acanthocystis_turfacea_Chlorella_virus	1.6e-17	27.8
WP_014611820.1\|4684271_4684700_-	hypothetical protein	NA	NA	NA	NA
WP_011791234.1\|4685080_4685761_+	acireductone synthase	NA	NA	NA	NA
WP_025007944.1\|4685845_4686952_-	hypothetical protein	NA	NA	NA	NA
WP_014611822.1\|4687305_4687701_-	GFA family protein	NA	NA	NA	NA
WP_014611823.1\|4687824_4688253_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014611824.1\|4688322_4688589_+	N-acetyltransferase	NA	NA	NA	NA
WP_012586382.1\|4688585_4689134_-	HPP family protein	NA	NA	NA	NA
WP_014611825.1\|4689257_4689668_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014611826.1\|4689793_4692250_-	hypothetical protein	NA	NA	NA	NA
WP_014609977.1\|4692380_4693703_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_014611827.1\|4693823_4695620_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	1.1e-39	24.1
WP_014611828.1\|4695812_4697129_-	hypothetical protein	NA	NA	NA	NA
WP_011791243.1\|4697125_4697989_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-19	35.5
WP_011791244.1\|4698031_4698403_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014611829.1\|4698496_4700137_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_011791246.1\|4700140_4700875_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-21	27.3
WP_011918278.1\|4700957_4702097_+	ABC transporter permease	NA	NA	NA	NA
WP_014611830.1\|4702176_4702425_+	hypothetical protein	NA	NA	NA	NA
WP_006083754.1\|4702497_4703031_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_011791249.1\|4703321_4703786_-	peptidase P60	A0A1V0DZX6	Clostridioides_phage	3.8e-13	39.3
WP_014611831.1\|4703972_4705163_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_014611832.1\|4705450_4706374_+	pirin family protein	NA	NA	NA	NA
WP_014611833.1\|4706622_4707669_+	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_014611834.1\|4707669_4708359_+	response regulator transcription factor	NA	NA	NA	NA
WP_011791254.1\|4708401_4709100_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_014611835.1\|4709101_4710466_+	Ktr system potassium transporter B	NA	NA	NA	NA
WP_014611836.1\|4710757_4711222_+	hypothetical protein	NA	NA	NA	NA
WP_041412436.1\|4711294_4712479_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014611838.1\|4712753_4713770_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011791259.1\|4713774_4714260_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_011791260.1\|4714518_4714953_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_011918275.1\|4715219_4716764_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_011791262.1\|4716774_4717908_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_011918274.1\|4717937_4719146_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	2.8e-15	26.5
WP_011918273.1\|4719155_4719899_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011791265.1\|4719884_4720340_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011791266.1\|4720362_4720617_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_014611839.1\|4721115_4721745_+	hypothetical protein	NA	NA	NA	NA
WP_014611840.1\|4721734_4723975_+	hypothetical protein	NA	NA	NA	NA
WP_014611841.1\|4723959_4727163_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014611842.1\|4727400_4728276_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_014611843.1\|4728272_4729451_-\|integrase	site-specific integrase	Q76UT6	Pseudomonas_virus	2.8e-15	30.7
WP_014611845.1\|4729803_4730013_+	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	1.2e-09	43.5
WP_049789562.1\|4731993_4732635_-\|transposase	IS21 family transposase	NA	NA	NA	NA
4732500:4732515	attR	NA	NA	NA	NA
WP_014611846.1\|4732704_4733721_+\|transposase	IS110 family transposase	NA	NA	NA	NA
4732500:4732515	attR	NA	NA	NA	NA
WP_041412272.1\|4734102_4734582_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041412273.1\|4734565_4735129_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.3e-10	75.0
WP_041412274.1\|4735125_4736031_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.0e-66	48.0
WP_014611848.1\|4736146_4736446_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014611849.1\|4736442_4736787_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.4e-20	46.2
WP_049789563.1\|4738390_4738960_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_014611850.1\|4739098_4739539_-	hypothetical protein	NA	NA	NA	NA
WP_014611851.1\|4739549_4740215_-	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_014611852.1\|4740282_4740960_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.7e-65	54.3
WP_014611853.1\|4740976_4743523_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	4.1e-181	42.8
WP_014611854.1\|4743542_4745546_-	MtrB/PioB family decaheme-associated outer membrane protein	NA	NA	NA	NA
WP_014611855.1\|4745560_4746502_-	DmsE family decaheme c-type cytochrome	NA	NA	NA	NA
WP_014611856.1\|4746859_4747651_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_014611857.1\|4748210_4749671_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.8e-75	39.4
WP_014611849.1\|4749757_4750102_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.4e-20	46.2
WP_014611848.1\|4750098_4750398_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041411927.1\|4750995_4751475_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_049789524.1\|4751458_4752028_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-09	70.0
WP_011791267.1\|4758187_4759615_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_011791268.1\|4759706_4760057_+	hypothetical protein	NA	NA	NA	NA
WP_014611858.1\|4760175_4761078_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_011791270.1\|4761261_4761465_+	DUF2061 domain-containing protein	NA	NA	NA	NA
WP_014611859.1\|4761795_4762386_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014611860.1\|4762420_4763551_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014611861.1\|4763550_4766592_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_014611862.1\|4766592_4767069_+	small multi-drug export protein	NA	NA	NA	NA
WP_014610303.1\|4768298_4768580_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014610304.1\|4768579_4768930_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_014610305.1\|4768951_4770619_+\|transposase	IS66-like element ISSpu21 family transposase	NA	NA	NA	NA
WP_014610306.1\|4770637_4770901_+\|transposase	transposase	NA	NA	NA	NA
WP_014611864.1\|4771210_4772464_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.1e-81	41.4
WP_014611865.1\|4772551_4773364_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_014611866.1\|4773609_4774746_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.0e-18	34.5
WP_014611867.1\|4774907_4776503_-	hypothetical protein	NA	NA	NA	NA
WP_014611868.1\|4776477_4778025_-	transcriptional antiterminator	NA	NA	NA	NA
WP_014611869.1\|4778024_4779680_-	AAA family ATPase	NA	NA	NA	NA
WP_014611870.1\|4779676_4781752_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_036512827.1\|4781735_4782572_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_014611872.1\|4782687_4784517_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	8.0e-139	45.5
WP_014611873.1\|4784561_4785332_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_011791273.1\|4785534_4787640_-	TonB-dependent receptor	NA	NA	NA	NA
WP_014611874.1\|4787916_4789281_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	7.6e-33	37.3
WP_011791275.1\|4789478_4789907_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_011791276.1\|4789941_4791333_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_011791277.1\|4791368_4792229_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_011791278.1\|4792279_4793821_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_011791279.1\|4793835_4794369_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_011791280.1\|4794384_4794855_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_011791281.1\|4794882_4795137_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_011791282.1\|4795172_4795994_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_014611875.1\|4796006_4796390_-	ATP synthase subunit I	NA	NA	NA	NA
WP_011791284.1\|4796615_4797494_-	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	2.8e-12	37.4
WP_011791285.1\|4797503_4798292_-	ParA family protein	Q8JL10	Natrialba_phage	1.9e-20	36.9
WP_011791286.1\|4798366_4798987_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_014611876.1\|4799104_4800994_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_014611877.1\|4801433_4801874_-	FMN-binding protein MioC	NA	NA	NA	NA
WP_001206290.1\|4803463_4804672_+\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4
4805354:4805371	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017566.1|WP_014611547.1|4234995_4235286_-|hypothetical-protein

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Acr_ID: NC_017566.1|WP_014611548.1|4235310_4235613_-|hypothetical-protein

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Acr_ID: NC_017566.1|WP_011918387.1|4391367_4391733_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017566.1|WP_014611547.1|4234995_4235286_-|hypothetical-protein

4234995_4235286_-

96 aa aa

NC_017566.1|WP_014611548.1|4235310_4235613_-|hypothetical-protein

4235310_4235613_-

100 aa aa

NC_017566.1|WP_011918387.1|4391367_4391733_+|hypothetical-protein

4391367_4391733_+

121 aa aa

4382925-4450456

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017566_1	Orphan	1.11\|731705\|32\|NC_017566\|CRISPRCasFinder,CRT	731705-731736	32	4424736-4424705	0
NC_017566_1	Orphan	1.38\|731707\|32\|NC_017566\|PILER-CR	731707-731738	32	4424736-4424705	0

1. spacer 1.11|731705|32|NC_017566|CRISPRCasFinder,CRT matches to NC_017566 position: 4424736-4424705, mismatch: 0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
********************************

2. spacer 1.38|731707|32|NC_017566|PILER-CR matches to NC_017566 position: 4424736-4424705, mismatch: 0

aatccagcaaaaccacttagtcagtcacactt	CRISPR spacer
aatccagcaaaaccacttagtcagtcacactt	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017566

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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