CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	0 crisprs	NA	0	0
NZ_CP021125	Rhizobium sp. Kim5 plasmid pRetKim5a, complete sequence	0 crisprs	NA	0	2
NZ_CP021124	Rhizobium sp. Kim5 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh	1	7
NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	0 crisprs	csa3	0	0
NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	0 crisprs	csa3,DEDDh	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021124_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021124_1

2069840-2069932

Orphan

Consensus_repeat	Method
GATCGGCAACGGCGTGCAGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021124_1

>merge|NZ_CP021124|1|2069840-2069932|CRISPRCasFinder
CATCGGTCCGGGCGTCAAGATCGGCCGGGATTGTTCGATTGCAGCCGGCGCCAGCATTCTCTGTGCGCTGATCGGCAACGGCGTCATCATCCA

>NZ_CP021124|1|1|2069840-2069932|CRISPRCasFinder
CATCGGTCCGGGCGTCAAGATCG	GCCGGGATTGTTCGATTGCAGCCGGCGCCAGCATTCTCTGTGCGCT
GATCGGCAACGGCGTCATCATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021124.1\|WP_009995727.1\|2077778_2078498_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP021124.1\|WP_077993842.1\|2064778_2065609_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP021124.1\|WP_009994369.1\|2061617_2062544_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP021124.1\|WP_038688692.1\|2073785_2075075_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP021124.1\|WP_077993852.1\|2064035_2064779_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237829
NZ_CP021124.1\|WP_077993837.1\|2075365_2077798_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP021124.1\|WP_077993838.1\|2071702_2072584_+\|LpxI-family-protein	unknown	unknown	gnl\|CDD\|226025
NZ_CP021124.1\|WP_077993839.1\|2070417_2070885_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP021124.1\|WP_038688698.1\|2080574_2081849_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP021124.1\|WP_038688680.1\|2066967_2069307_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP021124.1\|WP_077993835.1\|2078694_2079591_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP021124.1\|WP_038688686.1\|2070881_2071700_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP021124.1\|WP_038688678.1\|2065646_2066771_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NZ_CP021124.1\|WP_009986721.1\|2072580_2073750_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP021124.1\|WP_008526906.1\|2060610_2061378_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|183428
NZ_CP021124.1\|WP_009996073.1\|2059271_2060378_+\|solute-binding-protein	unknown	unknown	unknown
NZ_CP021124.1\|WP_038688672.1\|2062640_2063363_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP021124.1\|WP_077993855.1\|2058654_2059272_+\|5-bromo-4-chloroindolyl-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|378398
NZ_CP021124.1\|WP_004678618.1\|2063437_2063998_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP021124.1\|WP_009994476.1\|2079587_2080433_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363

Protein	Function_ID	Function_description	E-value
NZ_CP021124.1\|WP_009995727.1\|2077778_2078498_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.57497e-116
NZ_CP021124.1\|WP_077993842.1\|2064778_2065609_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.10358e-48
NZ_CP021124.1\|WP_009994369.1\|2061617_2062544_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.41252e-144
NZ_CP021124.1\|WP_038688692.1\|2073785_2075075_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP021124.1\|WP_077993852.1\|2064035_2064779_+\|isoprenyl-transferase	gnl\|CDD\|237829	PRK14834, PRK14834, isoprenyl transferase.	5.53388e-136
NZ_CP021124.1\|WP_077993837.1\|2075365_2077798_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	2.14056e-51
NZ_CP021124.1\|WP_077993838.1\|2071702_2072584_+\|LpxI-family-protein	gnl\|CDD\|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	5.85954e-111
NZ_CP021124.1\|WP_038688698.1\|2080574_2081849_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP021124.1\|WP_038688680.1\|2066967_2069307_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP021124.1\|WP_077993835.1\|2078694_2079591_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	5.20263e-26
NZ_CP021124.1\|WP_038688686.1\|2070881_2071700_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.66743e-143
NZ_CP021124.1\|WP_038688678.1\|2065646_2066771_+\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.82568e-83
NZ_CP021124.1\|WP_009986721.1\|2072580_2073750_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	3.41747e-170
NZ_CP021124.1\|WP_008526906.1\|2060610_2061378_+\|30S-ribosomal-protein-S2	gnl\|CDD\|183428	PRK12311, rpsB, 30S ribosomal protein S2.	1.19783e-166
NZ_CP021124.1\|WP_077993839.1\|2070417_2070885_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	3.55137e-92
NZ_CP021124.1\|WP_038688672.1\|2062640_2063363_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	7.97236e-129
NZ_CP021124.1\|WP_077993855.1\|2058654_2059272_+\|5-bromo-4-chloroindolyl-phosphate-hydrolase	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	2.51604e-19
NZ_CP021124.1\|WP_004678618.1\|2063437_2063998_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	5.64763e-101
NZ_CP021124.1\|WP_009994476.1\|2079587_2080433_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0

>NZ_CP021124.1|WP_038688680.1|2066967_2069307_+|outer-membrane-protein-assembly-factor-BamA
MKAGSKFLNAVSAVALSASVVASGAGALTFVSATAAEAAVIQRIDVRGASRVGAEAVRSNLTITPGKSFSNTDIDDSVKQLYGTGYFSDVKISVSGGTLVVNVQEAQLVNQVVFNGNRKIKDDKLATIVQTHAAGPYSDTQIQADIQAIKEAYAATGRSEVEVTTQVVPLGEGRVNLAFVINEGDRTKIDAINFVGNNAYSAGRLAAVINTKRSNFLSFLTRKDVYNEDKLHADEEALRQFYYNRGYADMRIVSSDASFDEATNKYTLTFNIEEGQRYDFGPVTVQSTVEGVGSDQLLPLVRTKEGHVYSAKEVQKSIEAISDQVASAGYPFARVTPRGNRDLNNNTIGVEYLVDQGERAYVERIEIRGNSRTRDYVIRREFDMSEGDAFNQQMITKAKRRLEALGYFSSVNISTQPGSSPDRVVVVVDVQDQSTGSFGVGAGYAAGGDGLLLEASIEEKNFLGRGQYIRISAGGGQEGSRAYGVSFTEPYFLGYRLAAGFDVNHSETSSNDNYDYEETSVVLRVTAPITEDLATTFRYNYKQMKYDADNGDLSDLSAPYQHLVEDSPWTRSSISQTLTYNTLDDTVLPREGIYATATQEIAGLGGDSQFYKIYGKARYYHLLADDADIIGSVSASAGYVVGFGEHLNVFDQFTLTNGDIRGFENKGIGPRVAGTNDDPLGGTTYFTASAEATFPMPGFPRDFNLRGAVFADAGTLFGNDVDLRGDGIEGEDASLRASVGVGVVWQSPFGSLRLDYAIPVLKEDFDKTQNFKFGINNQF
>NZ_CP021124.1|WP_038688678.1|2065646_2066771_+|RIP-metalloprotease-RseP
MSGLYTFLMGNVVTFILVLSLLVFVHEMGHYLVGRWSGIRILAFSVGFGPEIFGFTDRHGTRWKISAIPLGGYVRFFGDEDVSSKPDNDGIAAMSEEDRARSFAGAKLWKRAATVAAGPIANFLLAIAIFAVLFSVYGRMIADPVVAEVAPDGAAAAAGILPGDLLVAIDGNKVETFDDVRRYVAIRPSQKIIVTVERGGQKLDVPMVPQRTDRTDQFGNKIELGQIGIITNKEAGNFRLRTYTPLEAVREGVIESAGIVTGTFKYIANIFAGSMRADQLGGPIRVAQASGQMASLGIGAVLQLAAALSVSIGLLNLMPVPVLDGGHLMFYAVEAVRGRPLGSKAQEIAFRIGLAMILTLMVFTTWNDISVSSG
>NZ_CP021124.1|WP_077993842.1|2064778_2065609_+|phosphatidate-cytidylyltransferase
MQQELKLRIASGLILAVIVLAATWYGGLAFRILAAVIGLLIYYEWSKISGVARDWVSNAVGWIGEAAIALLVLVGNFEFAAGMLAGVTAVGIALIILHGTSRWFPAGLFYAGATGVALAGIRGDDRPGLYAMLFVFAVVWTTDILAYFVGRALRGPKLAPSISPGKTWSGAIGGAVSAVAAGVVLVHFLVPGAEVVAAGVALILSVCSQSGDLFESFIKRKFGVKDSSRLIPGHGGVMDRVDGLIFACFSAFLLAGLFSLIKGAEMTSLGSALFGL
>NZ_CP021124.1|WP_077993852.1|2064035_2064779_+|isoprenyl-transferase
MSETVFLTVPEHVAIIMDGNGRWAKQRGLPRTMGHRKGVEAVRETVRAAGAAGIKYLTLFAFSSENWRRPEAEVSDLLGLLKAFIRRDLAELHRQNVRIRVIGDRHSLRSDILGLLLEAEETTKDNTALTLVIAFNYGSRDEISRAVVSLAKDVESGRLRAQDITPALIDARLDTAGIPDPDLIIRTSGEERLSNFLLWQAAYSEFIFVPEYWPDFSPEIFRSALEKFASRDRRFGGLSSQAAAVGT
>NZ_CP021124.1|WP_004678618.1|2063437_2063998_+|ribosome-recycling-factor
MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKEKEIMQV
>NZ_CP021124.1|WP_038688672.1|2062640_2063363_+|UMP-kinase
MSLEPVYKRVLLKASGEALMGAQGFGIDVAVADRIASDIAEARHMGVEVGVVVGGGNIFRGVAVASKGGDRVTGDHMGMLGTIINALALATSLRKLNIDTVVLSAISMPEICESFSQRATLYHLSMGRVVIFAGGTGNPFFTTDSAAALRAAEMGAQAIFKGTQVDGIYTADPKKYPDATRLDRLTHQEVLDRGLAVMDVAAVALARENSIPIIVFSIHEKGGFAQILTGGGLKTIVSDN
>NZ_CP021124.1|WP_009994369.1|2061617_2062544_+|elongation-factor-Ts
MSEITAAMVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQDLVRGIAKVAVSTNGSVEAVAAATYPASGKSVSDTIKDAIATIGENMNLRRSVALSVEDGVVATYIHNAVSDGLGKLGVLVALKSTGDKEALNAIGRQVAMHIAATAPLAIRPEEVDAAVAERERNVFIEQSRASGKPDNIIEKMVEGRMRKFFEEVALLSQAFVINPDLTVAAAVKEAEKAVGAPIEVAGMARLLLGEGVEKEETDFAAEVAAAVKG
>NZ_CP021124.1|WP_008526906.1|2060610_2061378_+|30S-ribosomal-protein-S2
MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKLDEILGGEAQGFTKKERLNLEREREKLDKALGGIRDMGGTPDLMFIIDTNKEKIAIDEAKRLGIPVVAIIDSNCDPDLIDYPIPGNDDASRAIALYCELISRAAIDGIARQQSSSGRDLGASSEVPVEPALEEAAEG
>NZ_CP021124.1|WP_009996073.1|2059271_2060378_+|solute-binding-protein
MALSRRAFGVGLLGAGVVGTGGYFAVRDRPELQGLLGSRTTLFGFVGGEKEAFLADPEVVRALGSYGLTMDSRVAGSVEMVREQALLSQHPQYLWPSSSIMVDIARQSGIGIRNDRVVLNTPIVVYSWQPVVDGLMKAGLVTVISEGHHQLDLKALLDAILAGANWSKLGVNSLYGRARIVSTDPNRSNSGFMFAGLVLSLFSGNVATASDLATFGGKAQAIFRNMGFKSPSSGKLFDQYLAGGLGGEPMIVGYENQLVEWILADPTRWDRIKTSAGAKPVVLYPRPTVYSAHPLIVVDENANRLIEALVSPRLQELAWTRHGFRGPLGTATGNADSAIGSLLPAEVDAILPMPDAGVMLSLLSTLVS
>NZ_CP021124.1|WP_077993855.1|2058654_2059272_+|5-bromo-4-chloroindolyl-phosphate-hydrolase
MRNWLGNDGNWIVAGLAAAITVPLLSFAAGMPFWIAAIIALLVFVGLVSLLAPRRLFEGLDFKRIGSGRVAFARDLLEAAVPFAERLETAADAIGDKPAAAAVRHLAEIAADVFRKVEAKPESANAVRRFLSYYLPRAAEVAEGFAVIEAKRVPDPKQLGEVRGVLVKLEEAFVHYADSLVDEELGTLDTDLRLIQASLKEDIGR
>NZ_CP021124.1|WP_077993839.1|2070417_2070885_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTEEATTTLSSADIIEIMKLLPHRYPFLMVDKIIEIDGDNSAVGIKNVTVNEPHFTGHFPESPIMPGVLLIEGMAQTAGAICAKKEGQPGNLVYFMTIENARFRKPVVPGDRVEFHVKKHKQRGNIWKFHCDAKVDGALVAEADIGAMIVRKDQA
>NZ_CP021124.1|WP_038688686.1|2070881_2071700_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MSTIAESARIHPMAVVEDGATIGEGVKIGPFCHVGPHVVLHENVELLAHAIVTGRTVIGKGTRIFPMAVVGGDPQSVHHAGEETTLSVGANCTIREGVTMNTGTADFGGQTIVGDNNLFLANSHVAHDCRVGNHVIMSNNVMLAGHVVIEDRVILGGGSAVHQFTRVGRQAFVGGLSAVSYDVIPYGMLNGNPGLLGGLNVVGMTRAGIDRAVIHRVRRAYKAIFEGTASVRENAAAIREEYADCAEVMQILDFIAADSDRALSSPTRGQKG
>NZ_CP021124.1|WP_077993838.1|2071702_2072584_+|LpxI-family-protein
MALSSDTAAGRLAIIAGGGLLPSYVAEAARAAGENPVIVALKDESDRRWEGYDHAIIGIGDFAALDSLLNRYGIGRVVMSGSVRRRPEWREVRPTLRILMRVPAAIRTLLSGGDDTVLQMVIRLIEGNGRRVVGAHEIAPDLLASVGPLGAVTPGDEDRRDISRAAEAAETLGRLDVGQGAVSIGGRVVALEGLEGTDEMLDRVAGLRAAGRISTRRRGVLVKLCKPQQDIRADLPAIGVSTVLNAGKAGLAGIAVEAGRSLVLDRAAVIRAADETELFVCGIDRGLPEWGLE
>NZ_CP021124.1|WP_009986721.1|2072580_2073750_+|lipid-A-disaccharide-synthase
MNGAPLKIAVIAGEVSGDLLGADLIAALKRIHDGPVELVGVGGEGLQAEGLRSLFDFSELSIMGITQVLSRLPKLFGLIRRTTAEIIAAKPDILLIIDSPDFTHRVAKRVRTALPDLPVVNYVCPSVWAWKEYRANRMLAYVDHVLAVLPFEPATMQRLNGPATTYVGHRLTADPALLETRRLRAGRRPGSGTILLLPGSRSSEIQKLLPHFEAAVSELVSRNGPMRFILPTMRHKEGLVRELTAKWAVTPEIVIGAEAKWKAFVEADAAMAASGTVILELALADVPVVSAYKVDWIMRLLTSGIKTWTGALPNLIADYAVVPEYLNDIVRGASLARWMERLSADTLQLKAMKEGYELIWQRMQTEKPPGEHAAEILLEVLKKKKPGRF
>NZ_CP021124.1|WP_038688692.1|2073785_2075075_-|citrate-(Si)-synthase
MTDQSATIKIGDKSVDLAVKSGTIGPSVIDIGALYKNTASFTYDPGFTSTASCESKITYIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVASLRMIAKMPTLAAMAYKYHIGQPFVYPKNDLDYASNFLRMCFAVPCEEYVVNPVLSRAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLTEIGTVDHIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTTHEVLGELGIKDDPLLEVAMELERIALTDEYFIEKKLYPNIDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPEQRIGRPRQLYVGEPKRDYIPVSKR
>NZ_CP021124.1|WP_077993837.1|2075365_2077798_+|ComEC/Rec2-family-competence-protein
MQELTTVELRPQAGVGLADPVAFPAPAVGSRPAKTQSAVPLRHRLTTAVAQLLRAAGRLLSEEADHGRLLLFSPVFLGAGAAYWFLAATDFPLLPSLLCLSVLMLAVLVAGRSRPALRATFMALALVACGMLCAQLESWRASTVILDSSVTTTVTGRVERREGDDRGRWRYVLAVTGTEAPQVKRPPRRITVIARGADASFEIGDVITGRARLTPPAGPALPTLNDFSFGAYFDGIGANGFFYGAPEKVDSQAGPQPARSTSEALLEWLYQLRSGIGDRIRSILPGDTGAFAAALVTDERRAISKETTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLVPGVAQAYPTKKIAAAGALIAVTAYFLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALVIIAISPSEVLGPSFQMSFAATLALVSGYQLWKERRVRENPLLKLPVLRLVVAVAGFFGGVFLTSLIGGFSTALFAVEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDAPLWTVVGFGLDLVIAVAKTVSAWGGDIDLGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLIVLILPGSRPPDLVISEDGGLVALVATAAMASNRENPPDFIFDQWQRALVLPTHHPPKMLDGPAIPPQGEDRRLRLSRDQQNEARTAMMAAAAGGEANRFSCVKKAWCIARLGNGHVVAVIDNAAYLGPACDASEIVVTAVRLRFDRCHSGATLFTGETLRRTGSVELRFAQTGPEVATAFDTLSRPWMRHRAYDWRKDAFTESAPLAVSDSGE
>NZ_CP021124.1|WP_009995727.1|2077778_2078498_-|transcriptional-repressor-LexA
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGSSVSVPVMGRIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKVQGKLVGLIRRYH
>NZ_CP021124.1|WP_077993835.1|2078694_2079591_+|VOC-family-protein
MIAHSAKPHPLDHVVLPVVNIDLARERLGKLGFTVAADARHPFGTENACVFFADKTYIEPLGVASVEESEAAARQGNVFIARNRAFRFRCGEEGLSALAFLTEDAGLDHRRFVGNGASAGEMLQFSRPMRMPDGSESVGSFKLAFSSDLRAPDFFLFTCQRINSFPADRAALEAHANGVTGLAEIALCAPEPAAFAAFVGLAVGQTAVEKTGFGMNIAASNAKISLMTPEGLEAYFELVVSSADRGLRGRAILFTVTDLAVTEAHLAANGVTYTRKNNRILVKPTPGQGALFAFEEPR
>NZ_CP021124.1|WP_009994476.1|2079587_2080433_+|3-deoxy-8-phosphooctulonate-synthase
MSTDTNSEVKIGEGEGQVTFSNTGRLSLIAGPCQMESRDHAFMVAGTLKELCAKLGIGLVYKSSFDKANRTSLSAERGIGLEKGMQVFADLKREFGFPVLTDVHTAEQCAEVAEVIDVLQIPAFLCRQTDLLIAAAKTGRVVNVKKGQFLAPWDMKNVLKKLNASGNPNVLLCERGASFGYNTLVSDMRSLPIMAAMGAPVIFDATHSVAQPGGQGESSGGQREFVETLARAAVATGIAGVFLETHQDPDNAPSDGPNMVYLKDMPRLLEKLLAFDAVAKA
>NZ_CP021124.1|WP_038688698.1|2080574_2081849_+|phosphopyruvate-hydratase
MTAITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMIELDGTPNKSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGASASLLPVPMMNIINGGAHADNPIDFQEFMILPVGADSIAEAVRMGSEVFHTLRKELAAQGHNTNVGDEGGFAPGLKSASEALDFIVKSVEKAGYKPGEDIYLGLDCASTEFFKDGKYVLEGEGRTLESGAMAEYLAELAAKYPIISIEDGMAEDDWDGWKALTDLTGKKTQLVGDDLFVTNSARLRDGIRMGVANSILVKVNQIGSLTETLDAVNTAHKAAYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLSRSDRLAKYNQLIRIEEGLGPQAQYAGRSIIRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP021124_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021124_2

2070194-2070270

Orphan

Consensus_repeat	Method
GATCGGCAACGGCGTGCAGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021124_2

>merge|NZ_CP021124|2|2070194-2070270|CRISPRCasFinder
GATCGGCAACGGCGTGCAGATCGGCGGCCAGGCCGGCATCAAGGGCCATGTGACGATCGGCGACGGCGTGCAGATCG

>NZ_CP021124|2|2|2070194-2070270|CRISPRCasFinder
GATCGGCAACGGCGTGCAGATCG	GCGGCCAGGCCGGCATCAAGGGCCATGTGAC
GATCGGCGACGGCGTGCAGATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021124.1\|WP_009995727.1\|2077778_2078498_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP021124.1\|WP_077993842.1\|2064778_2065609_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP021124.1\|WP_009994369.1\|2061617_2062544_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP021124.1\|WP_038688692.1\|2073785_2075075_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP021124.1\|WP_077993852.1\|2064035_2064779_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237829
NZ_CP021124.1\|WP_077993837.1\|2075365_2077798_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP021124.1\|WP_077993838.1\|2071702_2072584_+\|LpxI-family-protein	unknown	unknown	gnl\|CDD\|226025
NZ_CP021124.1\|WP_077993839.1\|2070417_2070885_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP021124.1\|WP_038688698.1\|2080574_2081849_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP021124.1\|WP_038688680.1\|2066967_2069307_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP021124.1\|WP_077993835.1\|2078694_2079591_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP021124.1\|WP_038688686.1\|2070881_2071700_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP021124.1\|WP_038688678.1\|2065646_2066771_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NZ_CP021124.1\|WP_009986721.1\|2072580_2073750_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP021124.1\|WP_008526906.1\|2060610_2061378_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|183428
NZ_CP021124.1\|WP_009996073.1\|2059271_2060378_+\|solute-binding-protein	unknown	unknown	unknown
NZ_CP021124.1\|WP_038688672.1\|2062640_2063363_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP021124.1\|WP_077993855.1\|2058654_2059272_+\|5-bromo-4-chloroindolyl-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|378398
NZ_CP021124.1\|WP_004678618.1\|2063437_2063998_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP021124.1\|WP_009994476.1\|2079587_2080433_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363

Protein	Function_ID	Function_description	E-value
NZ_CP021124.1\|WP_009995727.1\|2077778_2078498_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.57497e-116
NZ_CP021124.1\|WP_077993842.1\|2064778_2065609_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.10358e-48
NZ_CP021124.1\|WP_009994369.1\|2061617_2062544_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.41252e-144
NZ_CP021124.1\|WP_038688692.1\|2073785_2075075_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP021124.1\|WP_077993852.1\|2064035_2064779_+\|isoprenyl-transferase	gnl\|CDD\|237829	PRK14834, PRK14834, isoprenyl transferase.	5.53388e-136
NZ_CP021124.1\|WP_077993837.1\|2075365_2077798_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	2.14056e-51
NZ_CP021124.1\|WP_077993838.1\|2071702_2072584_+\|LpxI-family-protein	gnl\|CDD\|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	5.85954e-111
NZ_CP021124.1\|WP_038688698.1\|2080574_2081849_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP021124.1\|WP_038688680.1\|2066967_2069307_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP021124.1\|WP_077993835.1\|2078694_2079591_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	5.20263e-26
NZ_CP021124.1\|WP_038688686.1\|2070881_2071700_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.66743e-143
NZ_CP021124.1\|WP_038688678.1\|2065646_2066771_+\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.82568e-83
NZ_CP021124.1\|WP_009986721.1\|2072580_2073750_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	3.41747e-170
NZ_CP021124.1\|WP_008526906.1\|2060610_2061378_+\|30S-ribosomal-protein-S2	gnl\|CDD\|183428	PRK12311, rpsB, 30S ribosomal protein S2.	1.19783e-166
NZ_CP021124.1\|WP_077993839.1\|2070417_2070885_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	3.55137e-92
NZ_CP021124.1\|WP_038688672.1\|2062640_2063363_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	7.97236e-129
NZ_CP021124.1\|WP_077993855.1\|2058654_2059272_+\|5-bromo-4-chloroindolyl-phosphate-hydrolase	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	2.51604e-19
NZ_CP021124.1\|WP_004678618.1\|2063437_2063998_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	5.64763e-101
NZ_CP021124.1\|WP_009994476.1\|2079587_2080433_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0

>NZ_CP021124.1|WP_038688680.1|2066967_2069307_+|outer-membrane-protein-assembly-factor-BamA
MKAGSKFLNAVSAVALSASVVASGAGALTFVSATAAEAAVIQRIDVRGASRVGAEAVRSNLTITPGKSFSNTDIDDSVKQLYGTGYFSDVKISVSGGTLVVNVQEAQLVNQVVFNGNRKIKDDKLATIVQTHAAGPYSDTQIQADIQAIKEAYAATGRSEVEVTTQVVPLGEGRVNLAFVINEGDRTKIDAINFVGNNAYSAGRLAAVINTKRSNFLSFLTRKDVYNEDKLHADEEALRQFYYNRGYADMRIVSSDASFDEATNKYTLTFNIEEGQRYDFGPVTVQSTVEGVGSDQLLPLVRTKEGHVYSAKEVQKSIEAISDQVASAGYPFARVTPRGNRDLNNNTIGVEYLVDQGERAYVERIEIRGNSRTRDYVIRREFDMSEGDAFNQQMITKAKRRLEALGYFSSVNISTQPGSSPDRVVVVVDVQDQSTGSFGVGAGYAAGGDGLLLEASIEEKNFLGRGQYIRISAGGGQEGSRAYGVSFTEPYFLGYRLAAGFDVNHSETSSNDNYDYEETSVVLRVTAPITEDLATTFRYNYKQMKYDADNGDLSDLSAPYQHLVEDSPWTRSSISQTLTYNTLDDTVLPREGIYATATQEIAGLGGDSQFYKIYGKARYYHLLADDADIIGSVSASAGYVVGFGEHLNVFDQFTLTNGDIRGFENKGIGPRVAGTNDDPLGGTTYFTASAEATFPMPGFPRDFNLRGAVFADAGTLFGNDVDLRGDGIEGEDASLRASVGVGVVWQSPFGSLRLDYAIPVLKEDFDKTQNFKFGINNQF
>NZ_CP021124.1|WP_038688678.1|2065646_2066771_+|RIP-metalloprotease-RseP
MSGLYTFLMGNVVTFILVLSLLVFVHEMGHYLVGRWSGIRILAFSVGFGPEIFGFTDRHGTRWKISAIPLGGYVRFFGDEDVSSKPDNDGIAAMSEEDRARSFAGAKLWKRAATVAAGPIANFLLAIAIFAVLFSVYGRMIADPVVAEVAPDGAAAAAGILPGDLLVAIDGNKVETFDDVRRYVAIRPSQKIIVTVERGGQKLDVPMVPQRTDRTDQFGNKIELGQIGIITNKEAGNFRLRTYTPLEAVREGVIESAGIVTGTFKYIANIFAGSMRADQLGGPIRVAQASGQMASLGIGAVLQLAAALSVSIGLLNLMPVPVLDGGHLMFYAVEAVRGRPLGSKAQEIAFRIGLAMILTLMVFTTWNDISVSSG
>NZ_CP021124.1|WP_077993842.1|2064778_2065609_+|phosphatidate-cytidylyltransferase
MQQELKLRIASGLILAVIVLAATWYGGLAFRILAAVIGLLIYYEWSKISGVARDWVSNAVGWIGEAAIALLVLVGNFEFAAGMLAGVTAVGIALIILHGTSRWFPAGLFYAGATGVALAGIRGDDRPGLYAMLFVFAVVWTTDILAYFVGRALRGPKLAPSISPGKTWSGAIGGAVSAVAAGVVLVHFLVPGAEVVAAGVALILSVCSQSGDLFESFIKRKFGVKDSSRLIPGHGGVMDRVDGLIFACFSAFLLAGLFSLIKGAEMTSLGSALFGL
>NZ_CP021124.1|WP_077993852.1|2064035_2064779_+|isoprenyl-transferase
MSETVFLTVPEHVAIIMDGNGRWAKQRGLPRTMGHRKGVEAVRETVRAAGAAGIKYLTLFAFSSENWRRPEAEVSDLLGLLKAFIRRDLAELHRQNVRIRVIGDRHSLRSDILGLLLEAEETTKDNTALTLVIAFNYGSRDEISRAVVSLAKDVESGRLRAQDITPALIDARLDTAGIPDPDLIIRTSGEERLSNFLLWQAAYSEFIFVPEYWPDFSPEIFRSALEKFASRDRRFGGLSSQAAAVGT
>NZ_CP021124.1|WP_004678618.1|2063437_2063998_+|ribosome-recycling-factor
MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKEKEIMQV
>NZ_CP021124.1|WP_038688672.1|2062640_2063363_+|UMP-kinase
MSLEPVYKRVLLKASGEALMGAQGFGIDVAVADRIASDIAEARHMGVEVGVVVGGGNIFRGVAVASKGGDRVTGDHMGMLGTIINALALATSLRKLNIDTVVLSAISMPEICESFSQRATLYHLSMGRVVIFAGGTGNPFFTTDSAAALRAAEMGAQAIFKGTQVDGIYTADPKKYPDATRLDRLTHQEVLDRGLAVMDVAAVALARENSIPIIVFSIHEKGGFAQILTGGGLKTIVSDN
>NZ_CP021124.1|WP_009994369.1|2061617_2062544_+|elongation-factor-Ts
MSEITAAMVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQDLVRGIAKVAVSTNGSVEAVAAATYPASGKSVSDTIKDAIATIGENMNLRRSVALSVEDGVVATYIHNAVSDGLGKLGVLVALKSTGDKEALNAIGRQVAMHIAATAPLAIRPEEVDAAVAERERNVFIEQSRASGKPDNIIEKMVEGRMRKFFEEVALLSQAFVINPDLTVAAAVKEAEKAVGAPIEVAGMARLLLGEGVEKEETDFAAEVAAAVKG
>NZ_CP021124.1|WP_008526906.1|2060610_2061378_+|30S-ribosomal-protein-S2
MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKLDEILGGEAQGFTKKERLNLEREREKLDKALGGIRDMGGTPDLMFIIDTNKEKIAIDEAKRLGIPVVAIIDSNCDPDLIDYPIPGNDDASRAIALYCELISRAAIDGIARQQSSSGRDLGASSEVPVEPALEEAAEG
>NZ_CP021124.1|WP_009996073.1|2059271_2060378_+|solute-binding-protein
MALSRRAFGVGLLGAGVVGTGGYFAVRDRPELQGLLGSRTTLFGFVGGEKEAFLADPEVVRALGSYGLTMDSRVAGSVEMVREQALLSQHPQYLWPSSSIMVDIARQSGIGIRNDRVVLNTPIVVYSWQPVVDGLMKAGLVTVISEGHHQLDLKALLDAILAGANWSKLGVNSLYGRARIVSTDPNRSNSGFMFAGLVLSLFSGNVATASDLATFGGKAQAIFRNMGFKSPSSGKLFDQYLAGGLGGEPMIVGYENQLVEWILADPTRWDRIKTSAGAKPVVLYPRPTVYSAHPLIVVDENANRLIEALVSPRLQELAWTRHGFRGPLGTATGNADSAIGSLLPAEVDAILPMPDAGVMLSLLSTLVS
>NZ_CP021124.1|WP_077993855.1|2058654_2059272_+|5-bromo-4-chloroindolyl-phosphate-hydrolase
MRNWLGNDGNWIVAGLAAAITVPLLSFAAGMPFWIAAIIALLVFVGLVSLLAPRRLFEGLDFKRIGSGRVAFARDLLEAAVPFAERLETAADAIGDKPAAAAVRHLAEIAADVFRKVEAKPESANAVRRFLSYYLPRAAEVAEGFAVIEAKRVPDPKQLGEVRGVLVKLEEAFVHYADSLVDEELGTLDTDLRLIQASLKEDIGR
>NZ_CP021124.1|WP_077993839.1|2070417_2070885_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTEEATTTLSSADIIEIMKLLPHRYPFLMVDKIIEIDGDNSAVGIKNVTVNEPHFTGHFPESPIMPGVLLIEGMAQTAGAICAKKEGQPGNLVYFMTIENARFRKPVVPGDRVEFHVKKHKQRGNIWKFHCDAKVDGALVAEADIGAMIVRKDQA
>NZ_CP021124.1|WP_038688686.1|2070881_2071700_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MSTIAESARIHPMAVVEDGATIGEGVKIGPFCHVGPHVVLHENVELLAHAIVTGRTVIGKGTRIFPMAVVGGDPQSVHHAGEETTLSVGANCTIREGVTMNTGTADFGGQTIVGDNNLFLANSHVAHDCRVGNHVIMSNNVMLAGHVVIEDRVILGGGSAVHQFTRVGRQAFVGGLSAVSYDVIPYGMLNGNPGLLGGLNVVGMTRAGIDRAVIHRVRRAYKAIFEGTASVRENAAAIREEYADCAEVMQILDFIAADSDRALSSPTRGQKG
>NZ_CP021124.1|WP_077993838.1|2071702_2072584_+|LpxI-family-protein
MALSSDTAAGRLAIIAGGGLLPSYVAEAARAAGENPVIVALKDESDRRWEGYDHAIIGIGDFAALDSLLNRYGIGRVVMSGSVRRRPEWREVRPTLRILMRVPAAIRTLLSGGDDTVLQMVIRLIEGNGRRVVGAHEIAPDLLASVGPLGAVTPGDEDRRDISRAAEAAETLGRLDVGQGAVSIGGRVVALEGLEGTDEMLDRVAGLRAAGRISTRRRGVLVKLCKPQQDIRADLPAIGVSTVLNAGKAGLAGIAVEAGRSLVLDRAAVIRAADETELFVCGIDRGLPEWGLE
>NZ_CP021124.1|WP_009986721.1|2072580_2073750_+|lipid-A-disaccharide-synthase
MNGAPLKIAVIAGEVSGDLLGADLIAALKRIHDGPVELVGVGGEGLQAEGLRSLFDFSELSIMGITQVLSRLPKLFGLIRRTTAEIIAAKPDILLIIDSPDFTHRVAKRVRTALPDLPVVNYVCPSVWAWKEYRANRMLAYVDHVLAVLPFEPATMQRLNGPATTYVGHRLTADPALLETRRLRAGRRPGSGTILLLPGSRSSEIQKLLPHFEAAVSELVSRNGPMRFILPTMRHKEGLVRELTAKWAVTPEIVIGAEAKWKAFVEADAAMAASGTVILELALADVPVVSAYKVDWIMRLLTSGIKTWTGALPNLIADYAVVPEYLNDIVRGASLARWMERLSADTLQLKAMKEGYELIWQRMQTEKPPGEHAAEILLEVLKKKKPGRF
>NZ_CP021124.1|WP_038688692.1|2073785_2075075_-|citrate-(Si)-synthase
MTDQSATIKIGDKSVDLAVKSGTIGPSVIDIGALYKNTASFTYDPGFTSTASCESKITYIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVASLRMIAKMPTLAAMAYKYHIGQPFVYPKNDLDYASNFLRMCFAVPCEEYVVNPVLSRAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLTEIGTVDHIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTTHEVLGELGIKDDPLLEVAMELERIALTDEYFIEKKLYPNIDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPEQRIGRPRQLYVGEPKRDYIPVSKR
>NZ_CP021124.1|WP_077993837.1|2075365_2077798_+|ComEC/Rec2-family-competence-protein
MQELTTVELRPQAGVGLADPVAFPAPAVGSRPAKTQSAVPLRHRLTTAVAQLLRAAGRLLSEEADHGRLLLFSPVFLGAGAAYWFLAATDFPLLPSLLCLSVLMLAVLVAGRSRPALRATFMALALVACGMLCAQLESWRASTVILDSSVTTTVTGRVERREGDDRGRWRYVLAVTGTEAPQVKRPPRRITVIARGADASFEIGDVITGRARLTPPAGPALPTLNDFSFGAYFDGIGANGFFYGAPEKVDSQAGPQPARSTSEALLEWLYQLRSGIGDRIRSILPGDTGAFAAALVTDERRAISKETTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLVPGVAQAYPTKKIAAAGALIAVTAYFLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALVIIAISPSEVLGPSFQMSFAATLALVSGYQLWKERRVRENPLLKLPVLRLVVAVAGFFGGVFLTSLIGGFSTALFAVEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDAPLWTVVGFGLDLVIAVAKTVSAWGGDIDLGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLIVLILPGSRPPDLVISEDGGLVALVATAAMASNRENPPDFIFDQWQRALVLPTHHPPKMLDGPAIPPQGEDRRLRLSRDQQNEARTAMMAAAAGGEANRFSCVKKAWCIARLGNGHVVAVIDNAAYLGPACDASEIVVTAVRLRFDRCHSGATLFTGETLRRTGSVELRFAQTGPEVATAFDTLSRPWMRHRAYDWRKDAFTESAPLAVSDSGE
>NZ_CP021124.1|WP_009995727.1|2077778_2078498_-|transcriptional-repressor-LexA
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGSSVSVPVMGRIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKVQGKLVGLIRRYH
>NZ_CP021124.1|WP_077993835.1|2078694_2079591_+|VOC-family-protein
MIAHSAKPHPLDHVVLPVVNIDLARERLGKLGFTVAADARHPFGTENACVFFADKTYIEPLGVASVEESEAAARQGNVFIARNRAFRFRCGEEGLSALAFLTEDAGLDHRRFVGNGASAGEMLQFSRPMRMPDGSESVGSFKLAFSSDLRAPDFFLFTCQRINSFPADRAALEAHANGVTGLAEIALCAPEPAAFAAFVGLAVGQTAVEKTGFGMNIAASNAKISLMTPEGLEAYFELVVSSADRGLRGRAILFTVTDLAVTEAHLAANGVTYTRKNNRILVKPTPGQGALFAFEEPR
>NZ_CP021124.1|WP_009994476.1|2079587_2080433_+|3-deoxy-8-phosphooctulonate-synthase
MSTDTNSEVKIGEGEGQVTFSNTGRLSLIAGPCQMESRDHAFMVAGTLKELCAKLGIGLVYKSSFDKANRTSLSAERGIGLEKGMQVFADLKREFGFPVLTDVHTAEQCAEVAEVIDVLQIPAFLCRQTDLLIAAAKTGRVVNVKKGQFLAPWDMKNVLKKLNASGNPNVLLCERGASFGYNTLVSDMRSLPIMAAMGAPVIFDATHSVAQPGGQGESSGGQREFVETLARAAVATGIAGVFLETHQDPDNAPSDGPNMVYLKDMPRLLEKLLAFDAVAKA
>NZ_CP021124.1|WP_038688698.1|2080574_2081849_+|phosphopyruvate-hydratase
MTAITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMIELDGTPNKSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGASASLLPVPMMNIINGGAHADNPIDFQEFMILPVGADSIAEAVRMGSEVFHTLRKELAAQGHNTNVGDEGGFAPGLKSASEALDFIVKSVEKAGYKPGEDIYLGLDCASTEFFKDGKYVLEGEGRTLESGAMAEYLAELAAKYPIISIEDGMAEDDWDGWKALTDLTGKKTQLVGDDLFVTNSARLRDGIRMGVANSILVKVNQIGSLTETLDAVNTAHKAAYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLSRSDRLAKYNQLIRIEEGLGPQAQYAGRSIIRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_LR723672	Rhizobium flavum strain YW14 plasmid 3	117273-117303	5	0.839
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP039905	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence	171034-171064	5	0.839
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	110882-110912	5	0.839
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_LS974446	Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence	10027-10057	5	0.839
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	734894-734924	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	350211-350241	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	597559-597589	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	455773-455803	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	756251-756281	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1460821-1460851	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	232935-232965	8	0.742
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP010856	Marinovum algicola DG 898 plasmid pMaD1, complete sequence	216682-216712	9	0.71
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	MG925349	Mycobacterium phage Mendokysei, complete genome	20937-20967	9	0.71
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	7423-7453	9	0.71
NZ_CP021124_2	2.1\|2070217\|31\|NZ_CP021124\|CRISPRCasFinder	2070217-2070247	31	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	554325-554355	9	0.71

1. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_LR723672 (Rhizobium flavum strain YW14 plasmid 3) position: , mismatch: 5, identity: 0.839

gcggccaggccggcatcaagggccat-gtgac	CRISPR spacer
gcggcctcgccggcatcaagggcaacagtga-	Protospacer
******  *************** *. ****

2. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 5, identity: 0.839

gcggccaggccggcatcaagggccat-gtgac	CRISPR spacer
gcggcctcgccggcatcaagggcaacagtga-	Protospacer
******  *************** *. ****

3. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 5, identity: 0.839

gcggccaggccggcatcaagggccat-gtgac	CRISPR spacer
gcggcctcgccggcatcaagggcaacagtga-	Protospacer
******  *************** *. ****

4. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_LS974446 (Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.839

gcggccaggccggcatcaagggccat-gtgac	CRISPR spacer
gcggcctcgccggcatcaagggcaacagtga-	Protospacer
******  *************** *. ****

5. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
tcgaggcggccggcatcaaggcccatgtgtg	Protospacer
 **.   ************** *******

6. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
gaggccaggcgggcagcaagggccacggcct	Protospacer
* ******** **** *********.*   .

7. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
gaggccaggcgggcagcaagggccacggcct	Protospacer
* ******** **** *********.*   .

8. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
tcgagaaggccggcatcaaagcccatgtgtg	Protospacer
 **.  *************.* *******

9. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
gaaacggcgccgacatcaagggccgtgtgac	Protospacer
* ..* . ****.***********.******

10. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
gaaacggcgccgacatcaagggccgtgtgac	Protospacer
* ..* . ****.***********.******

11. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
gcggccagcacggcatcaagggcttcacgaa	Protospacer
********  *************. ...**

12. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP010856 (Marinovum algicola DG 898 plasmid pMaD1, complete sequence) position: , mismatch: 9, identity: 0.71

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
tcacacagaccggcatcaagggccatggtcg	Protospacer
 *.  ***.******************

13. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to MG925349 (Mycobacterium phage Mendokysei, complete genome) position: , mismatch: 9, identity: 0.71

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
ccggccaggccggcagcaagggcggcgacgg	Protospacer
 ************** ******* ..*  .

14. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.71

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
ccggcaaggccggcaacaagggcctcttcga	Protospacer
 **** ********* ******** . * .

15. spacer 2.1|2070217|31|NZ_CP021124|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.71

gcggccaggccggcatcaagggccatgtgac	CRISPR spacer
ccggcaaggccggcaacaagggcctcttcga	Protospacer
 **** ********* ******** . * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1652408 : 1661509

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077993245.1\|1652408_1653707_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.2e-97	50.5
WP_003547190.1\|1653716_1654193_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_077993247.1\|1654196_1655435_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-33	36.6
WP_009995785.1\|1655434_1656046_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	6.8e-18	35.9
WP_009995786.1\|1656114_1656984_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	3.4e-95	59.4
WP_086156188.1\|1656993_1657881_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_077993253.1\|1657887_1658940_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.8e-96	51.8
WP_077993258.1\|1658946_1659525_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.2e-37	48.1
WP_077993260.1\|1659514_1661509_-	hypothetical protein	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	6.8e-06	26.9

DBSCAN-SWA_2

1961190 : 1974241

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077994098.1\|1961190_1962204_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	6.2e-24	42.6
WP_038688483.1\|1962222_1963080_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.6e-33	37.2
WP_077993964.1\|1963076_1963781_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.1e-39	47.0
WP_009990121.1\|1963963_1964155_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.4e-09	74.4
WP_009990120.1\|1964206_1964824_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_038688492.1\|1964820_1965648_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.1e-42	42.8
WP_077993961.1\|1965747_1967031_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-99	45.8
WP_038688496.1\|1967035_1967809_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	30.2
WP_077993958.1\|1967805_1968459_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.1e-17	36.3
WP_077993955.1\|1968598_1970179_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	1.1e-11	29.2
WP_009990833.1\|1970233_1971106_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1971308_1971656_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_077993953.1\|1971700_1974241_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.7e-58	49.8

DBSCAN-SWA_3

2223740 : 2233900

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077993685.1\|2223740_2226662_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.0
WP_086156221.1\|2226945_2227458_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.4e-45	56.5
WP_038688903.1\|2227542_2228190_-	MarC family protein	NA	NA	NA	NA
WP_077993681.1\|2228427_2231250_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	6.7e-76	41.9
WP_003539654.1\|2231570_2231726_-	hypothetical protein	NA	NA	NA	NA
WP_125461974.1\|2231857_2232148_-	hypothetical protein	NA	NA	NA	NA
WP_077993679.1\|2232238_2232733_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.1e-25	37.8
WP_077993677.1\|2232789_2233362_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.9e-42	52.6
WP_004671916.1\|2233390_2233900_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-44	58.8

DBSCAN-SWA_4

2869038 : 2917791

Enterobacteria_phage(25.0%)

integrase,transposase

attL 2864936:2864952|attR 2916508:2916524

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2864936:2864952	attL	NA	NA	NA	NA
WP_009996985.1\|2869038_2870604_+\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_009996984.1\|2870603_2870909_+	hypothetical protein	NA	NA	NA	NA
WP_010054217.1\|2871635_2872034_-	transcriptional repressor	NA	NA	NA	NA
WP_077992903.1\|2872030_2872846_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_009993021.1\|2872838_2873795_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-07	25.0
WP_077992905.1\|2873896_2874973_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_077992907.1\|2875086_2876292_+	GTP-binding protein	NA	NA	NA	NA
WP_164519039.1\|2876288_2876456_+	hypothetical protein	NA	NA	NA	NA
WP_077992909.1\|2876747_2877074_-	hypothetical protein	NA	NA	NA	NA
WP_077992911.1\|2877413_2878646_+	chromate efflux transporter	NA	NA	NA	NA
WP_038692638.1\|2878771_2879155_+	VOC family protein	NA	NA	NA	NA
WP_038689835.1\|2879248_2880580_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_077992913.1\|2880580_2882002_-	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	5.6e-39	87.5
WP_009994915.1\|2882003_2882819_-	chromate resistance protein	NA	NA	NA	NA
WP_038689841.1\|2883108_2883432_+	hypothetical protein	NA	NA	NA	NA
WP_077992915.1\|2883671_2883974_-	hypothetical protein	NA	NA	NA	NA
WP_009995741.1\|2884402_2885830_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_125461979.1\|2886132_2886414_-	hypothetical protein	NA	NA	NA	NA
WP_086156260.1\|2886400_2887075_-	hypothetical protein	NA	NA	NA	NA
WP_086156261.1\|2887067_2887361_-	hypothetical protein	NA	NA	NA	NA
WP_086156262.1\|2887353_2887803_-	hypothetical protein	NA	NA	NA	NA
WP_086156263.1\|2887789_2888494_-	hypothetical protein	NA	NA	NA	NA
WP_009994407.1\|2888483_2888906_-	hypothetical protein	NA	NA	NA	NA
WP_009994408.1\|2888902_2889325_-	hypothetical protein	NA	NA	NA	NA
WP_086156264.1\|2889321_2889864_-	hypothetical protein	A0A142F138	Bacillus_phage	5.1e-17	53.8
WP_009995091.1\|2890062_2890908_-	hypothetical protein	NA	NA	NA	NA
WP_009995090.1\|2890900_2892370_-	hypothetical protein	NA	NA	NA	NA
WP_009996747.1\|2893182_2893434_+	hypothetical protein	NA	NA	NA	NA
WP_009996748.1\|2893430_2893784_+	hypothetical protein	NA	NA	NA	NA
WP_009996750.1\|2893838_2894042_+	hypothetical protein	NA	NA	NA	NA
WP_009996751.1\|2894041_2894602_+	hypothetical protein	NA	NA	NA	NA
WP_164519040.1\|2894601_2894745_+	hypothetical protein	NA	NA	NA	NA
WP_086156266.1\|2894732_2895584_+	hypothetical protein	NA	NA	NA	NA
WP_086156464.1\|2895580_2896351_-	thermonuclease family protein	NA	NA	NA	NA
WP_086156267.1\|2896499_2897519_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_086156268.1\|2897519_2898260_-	hypothetical protein	NA	NA	NA	NA
WP_125461980.1\|2898230_2899427_+	hypothetical protein	NA	NA	NA	NA
WP_009993591.1\|2899517_2900216_-	hypothetical protein	NA	NA	NA	NA
WP_086156271.1\|2900442_2900985_-	hypothetical protein	NA	NA	NA	NA
WP_086156272.1\|2900981_2901602_-	hypothetical protein	NA	NA	NA	NA
WP_009996443.1\|2901601_2902213_-	hypothetical protein	A0A0H3UZD5	Geobacillus_virus	1.3e-13	29.3
WP_125461981.1\|2902607_2903132_+	hypothetical protein	NA	NA	NA	NA
WP_086156275.1\|2903136_2904285_+	glycosyltransferase	NA	NA	NA	NA
WP_086156276.1\|2904697_2906623_-	hypothetical protein	NA	NA	NA	NA
WP_009997106.1\|2906619_2907516_-	hypothetical protein	NA	NA	NA	NA
WP_086156278.1\|2907518_2908484_-	hypothetical protein	NA	NA	NA	NA
WP_009997103.1\|2908483_2909554_-	hypothetical protein	NA	NA	NA	NA
WP_086156280.1\|2909554_2910850_-	metallophosphoesterase	NA	NA	NA	NA
WP_029875831.1\|2911808_2913095_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	6.9e-44	34.3
WP_009997167.1\|2913094_2913895_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.5e-57	44.0
WP_086156281.1\|2913949_2915065_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086156283.1\|2915424_2915736_-	hypothetical protein	NA	NA	NA	NA
WP_009997163.1\|2916262_2916466_-\|transposase	transposase	NA	NA	NA	NA
WP_089152689.1\|2916601_2917791_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.3e-48	40.4
2916508:2916524	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3155773 : 3164250

Rhizobium_phage(50.0%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086156312.1\|3155773_3156577_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	2.5e-108	71.6
WP_009997092.1\|3158624_3159296_-	hypothetical protein	R9U4D4	Rhizobium_phage	1.2e-31	56.8
WP_009997093.1\|3159292_3160309_-	hypothetical protein	A0A068CE15	Rhizobium_phage	4.0e-23	30.5
WP_009997094.1\|3160308_3160905_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_009997096.1\|3160904_3162044_-\|plate	baseplate J family protein	A0A192Y6E4	Salmonella_phage	3.0e-27	30.9
WP_009997097.1\|3162045_3162507_-	GP46 family protein	NA	NA	NA	NA
WP_077991905.1\|3162562_3163075_-	hypothetical protein	R9TP58	Rhizobium_phage	4.0e-19	44.8
WP_077991955.1\|3163074_3164250_-	Mu P family protein	M4M9L5	Vibrio_phage	5.0e-33	29.3

DBSCAN-SWA_6

3168947 : 3193686

Ochrobactrum_phage(38.1%)

integrase,tail,head,transposase

attL 3177583:3177597|attR 3202097:3202111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086156313.1\|3168947_3170435_-\|tail	phage tail protein	A0A068CC80	Rhizobium_phage	2.2e-22	26.1
WP_077991890.1\|3170438_3170735_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_077991884.1\|3170738_3171320_-	hypothetical protein	NA	NA	NA	NA
WP_009995560.1\|3171319_3171754_-	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	1.4e-12	38.9
WP_009995561.1\|3171841_3172279_-	hypothetical protein	NA	NA	NA	NA
WP_009995562.1\|3172400_3173294_-\|head	Mu-like prophage major head subunit gpT	A0A1B0T6J4	Pelagibaca_phage	2.3e-75	50.2
WP_077991879.1\|3173304_3173700_-	hypothetical protein	A0A2H4IZH5	uncultured_Caudovirales_phage	1.5e-05	33.3
WP_077991877.1\|3173701_3174739_-	hypothetical protein	M4SNT6	Rhodobacter_phage	2.9e-37	35.8
WP_009997114.1\|3174823_3175336_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	5.0e-14	42.2
WP_086156314.1\|3175439_3176648_-	hypothetical protein	J9STS2	Pseudomonas_phage	1.4e-54	45.3
WP_009997112.1\|3176650_3178249_-	DUF935 domain-containing protein	M4SPR8	Rhodobacter_phage	3.8e-116	44.4
3177583:3177597	attL	NA	NA	NA	NA
WP_009997111.1\|3179896_3180118_-	hypothetical protein	NA	NA	NA	NA
WP_009997109.1\|3180275_3180884_-	DUF3486 family protein	M4SNU5	Rhodobacter_phage	1.2e-43	50.3
WP_077991953.1\|3180886_3181168_-	hypothetical protein	A0A219VHE1	Ochrobactrum_phage	4.7e-22	59.8
WP_037140408.1\|3181200_3181548_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	2.6e-14	40.9
WP_077991868.1\|3181547_3181769_-	molecular chaperone DnaK	NA	NA	NA	NA
WP_077991866.1\|3181765_3181978_-	hypothetical protein	NA	NA	NA	NA
WP_077991863.1\|3181997_3182360_-	hypothetical protein	A0A068CE23	Rhizobium_phage	1.9e-15	51.6
WP_009994352.1\|3182356_3182635_-	hypothetical protein	NA	NA	NA	NA
WP_009994353.1\|3182624_3183359_-	TIGR02594 family protein	A0A1B0WLU0	Flavobacterium_phage	4.3e-27	46.0
WP_077991860.1\|3183455_3183815_-	hypothetical protein	NA	NA	NA	NA
WP_125461984.1\|3183811_3184012_-	hypothetical protein	NA	NA	NA	NA
WP_009995567.1\|3184092_3184734_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	6.4e-43	45.4
WP_009995566.1\|3184772_3185429_+	hypothetical protein	NA	NA	NA	NA
WP_077991850.1\|3185456_3186194_+	hypothetical protein	NA	NA	NA	NA
WP_009995811.1\|3186211_3186877_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	3.6e-65	59.5
WP_009995808.1\|3187075_3187354_-	hypothetical protein	NA	NA	NA	NA
WP_037140431.1\|3187350_3187644_-	hypothetical protein	NA	NA	NA	NA
WP_077991847.1\|3187640_3188660_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	1.6e-96	57.3
WP_077991845.1\|3188782_3190741_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A219VHD4	Ochrobactrum_phage	2.2e-187	68.8
WP_037140437.1\|3190743_3191202_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	2.2e-53	68.6
WP_077991841.1\|3191194_3192046_-	ParB N-terminal domain-containing protein	A0A219VHB6	Ochrobactrum_phage	2.7e-81	62.3
WP_009994519.1\|3192045_3192408_-	hypothetical protein	A0A219VHC3	Ochrobactrum_phage	1.4e-15	41.0
WP_009994523.1\|3192535_3192868_-	hypothetical protein	NA	NA	NA	NA
WP_086156315.1\|3193011_3193686_+	helix-turn-helix domain-containing protein	R9U2Q5	Rhizobium_phage	4.7e-44	41.9
3202097:3202111	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4120057 : 4130344

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077994995.1\|4120057_4120768_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.0e-49	48.2
WP_077994994.1\|4120767_4121124_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_086156382.1\|4121120_4121849_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	3.6e-42	39.4
WP_077994992.1\|4121965_4123189_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	3.4e-16	28.3
WP_077994991.1\|4123292_4124267_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.1e-139	75.7
WP_086156383.1\|4124468_4126673_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.5e-211	51.5
WP_009989857.1\|4127068_4127290_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.0e-16	53.4
WP_077994988.1\|4128106_4130344_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.8e-120	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021125

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

231049 : 289994

Mannheimia_phage(100.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029875552.1\|231049_232276_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|232239_234126_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|234125_234629_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|234715_235249_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|235364_236852_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004680424.1\|236854_237409_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|237444_238437_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_086156541.1\|240173_242453_-	hypothetical protein	NA	NA	NA	NA
WP_010069402.1\|245010_246366_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_029875554.1\|246427_247594_+	FHA domain-containing protein	NA	NA	NA	NA
WP_012489524.1\|247593_248883_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_029875555.1\|248892_252498_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004678816.1\|252583_252772_+	hypothetical protein	NA	NA	NA	NA
WP_012489526.1\|252794_254411_+	hypothetical protein	NA	NA	NA	NA
WP_008536071.1\|254506_254749_+	hypothetical protein	NA	NA	NA	NA
WP_037147017.1\|256089_257100_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536079.1\|260117_261005_-	hypothetical protein	NA	NA	NA	NA
WP_086156542.1\|262074_265380_+	hypothetical protein	NA	NA	NA	NA
WP_086156522.1\|267945_270930_+	hypothetical protein	NA	NA	NA	NA
WP_086156523.1\|273519_274941_-\|transposase	ISNCY-like element ISRel10 family transposase	NA	NA	NA	NA
WP_012489538.1\|275114_275318_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_086156543.1\|275983_276712_+	carbonic anhydrase	NA	NA	NA	NA
WP_080771763.1\|278232_279165_-	cation transporter	NA	NA	NA	NA
WP_040111830.1\|279858_280353_-	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_040111944.1\|280349_281705_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA
WP_040111831.1\|281712_283203_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_012489545.1\|283261_284803_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_010023084.1\|284926_286429_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_040111861.1\|286536_287430_-	nitrogenase iron protein	NA	NA	NA	NA
WP_086156524.1\|289043_289994_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	5.9e-08	31.7

DBSCAN-SWA_2

320939 : 364083

Paenibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086156525.1\|320939_321908_-\|transposase	IS481 family transposase	Q4QYC7	Simian_immunodeficiency_virus	2.8e-05	35.3
WP_040111947.1\|322028_323063_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_040111855.1\|323163_324066_-	hypothetical protein	NA	NA	NA	NA
WP_040111856.1\|324062_325616_-	hypothetical protein	NA	NA	NA	NA
WP_086156526.1\|327725_328568_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	6.8e-16	30.6
WP_086156527.1\|331191_331458_-	polysaccharide repressor protein	NA	NA	NA	NA
WP_008536498.1\|332610_333048_+	hypothetical protein	NA	NA	NA	NA
WP_009996802.1\|333565_334276_+	nitrogen fixation protein NifQ	NA	NA	NA	NA
WP_040111861.1\|335161_336055_+	nitrogenase iron protein	NA	NA	NA	NA
WP_040111862.1\|336162_336375_+	hypothetical protein	NA	NA	NA	NA
WP_040111864.1\|337318_338407_+	coproporphyrinogen dehydrogenase	NA	NA	NA	NA
WP_086156528.1\|338880_339831_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.7e-07	31.0
WP_040111865.1\|339963_340503_-	hypothetical protein	NA	NA	NA	NA
WP_040111950.1\|340632_341307_-	transcriptional regulator	NA	NA	NA	NA
WP_089152686.1\|342871_343634_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.1e-20	42.6
WP_009988764.1\|346261_346594_+	nodulation protein NolE	NA	NA	NA	NA
WP_040111866.1\|346760_347705_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_086156530.1\|348054_348471_-	cupin domain-containing protein	NA	NA	NA	NA
WP_009998866.1\|348674_349463_-	ABC transporter permease	NA	NA	NA	NA
WP_018247215.1\|349466_350381_-	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-29	30.8
WP_077993555.1\|351139_351757_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_040111869.1\|351772_353092_-	chitooligosaccharide synthase NodC	M1HJ48	Acanthocystis_turfacea_Chlorella_virus	7.9e-11	25.9
WP_040111870.1\|353099_353759_-	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_089152686.1\|354482_355245_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.1e-20	42.6
WP_077989437.1\|357539_357911_+	hypothetical protein	NA	NA	NA	NA
WP_089152686.1\|357927_358690_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.1e-20	42.6
WP_040111874.1\|363114_364083_+\|transposase	IS481 family transposase	Q4QYC7	Simian_immunodeficiency_virus	2.8e-05	35.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021124

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021125

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection