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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017181 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB03, complete sequence 0 crisprs NA 0 0 0 0
NC_017182 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB05, complete sequence 0 crisprs NA 0 0 0 0
NC_017185 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOBP6, complete sequence 0 crisprs NA 0 0 0 0
NC_017184 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB04, complete sequence 0 crisprs NA 0 0 0 0
NC_017183 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB02, complete sequence 0 crisprs NA 0 0 0 0
NC_017180 Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB01, complete sequence 0 crisprs NA 0 0 0 0
NC_017262 Zymomonas mobilis subsp. mobilis ATCC 10988, complete sequence 4 crisprs cas7f,cas5f,cas8f,cas3f,cas1,DEDDh,csa3 0 6 3 0

Results visualization

1. NC_017262
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017262_1 125014-125404 Orphan I-F
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017262_2 579550-579677 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017262_3 830110-830314 Orphan I-F
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017262_4 1811916-1812426 Orphan I-F
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017262_4 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812247-1812278 32 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 256905-256936 6 0.812
NC_017262_1 1.6|125345|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 125345-125376 32 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3983943-3983974 7 0.781
NC_017262_4 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812187-1812218 32 NC_024970 Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence 203674-203705 7 0.781
NC_017262_4 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812187-1812218 32 NZ_KJ396772 Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence 203674-203705 7 0.781
NC_017262_4 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812187-1812218 32 NZ_CP024986 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence 37372-37403 7 0.781
NC_017262_1 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 125103-125134 32 NC_014718 Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence 695836-695867 8 0.75
NC_017262_4 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT 1811944-1811975 32 NZ_CP036405 Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence 180802-180833 8 0.75
NC_017262_4 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT 1811944-1811975 32 NZ_CP023037 Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence 34319-34350 8 0.75
NC_017262_1 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 125103-125134 32 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 288850-288881 9 0.719
NC_017262_1 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 125103-125134 32 NZ_CP016463 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence 685247-685278 9 0.719
NC_017262_1 1.6|125345|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 125345-125376 32 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 767826-767857 9 0.719
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MT741943 Acinetobacter phage Meroveus, complete genome 144143-144178 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MN648195 Acinetobacter phage Konradin, complete genome 143029-143064 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MN732883 Acinetobacter phage Kimel, complete genome 144450-144485 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MN662249 Acinetobacter phage Stupor, complete genome 141335-141370 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 NC_049493 Acinetobacter phage vB_AbaP_Lazarus, complete genome 142812-142847 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 NC_049441 Acinetobacter phage KARL-1, complete genome 40055-40090 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MN782535 Acinetobacter phage Lazarus, complete genome 142812-142847 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 NC_049479 Acinetobacter phage vB_AbaP_Konradin, complete genome 143029-143064 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MH460829 Acinetobacter phage vB_ApiM_fHyAci03, complete genome 143415-143450 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MN723850 Acinetobacter phage Apostate, complete genome 142620-142655 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 NC_049492 Acinetobacter phage vB_AbaP_Kimel, complete genome 144450-144485 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 MT409116 Acinetobacter phage Octan, complete genome 143220-143255 9 0.75
NC_017262_3 3.2|830194|36|NC_017262|CRISPRCasFinder 830194-830229 36 NC_049491 Acinetobacter phage vB_AbaP_Apostate, complete genome 142620-142655 9 0.75
NC_017262_4 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT 1811944-1811975 32 NZ_CP031163 Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence 538903-538934 9 0.719
NC_017262_4 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812247-1812278 32 NZ_CP046100 Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence 106036-106067 9 0.719
NC_017262_4 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR 1812247-1812278 32 CP052389 Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1 4544-4575 9 0.719

1. spacer 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

acggttgaccatgttggtgaccagacttttac	CRISPR spacer
acggttgaccatgttggtgaacaggatggcac	Protospacer
******************** ***. *  .**

2. spacer 1.6|125345|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

cgactgccggacgttctgcgacacctgaaata	CRISPR spacer
caactaccggacgttctgcggcacctgaccgc	Protospacer
*.***.**************.*******    

3. spacer 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 7, identity: 0.781

gatttggctgaccggttacatgatctcgatgc	CRISPR spacer
gctgtcgcagaccggttacatgatcgcgacga	Protospacer
* * * ** **************** ***.* 

4. spacer 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 7, identity: 0.781

gatttggctgaccggttacatgatctcgatgc	CRISPR spacer
gctgtcgcagaccggttacatgatcgcgacga	Protospacer
* * * ** **************** ***.* 

5. spacer 4.5|1812187|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 7, identity: 0.781

gatttggctgaccggttacatgatctcgatgc	CRISPR spacer
gctgtcgcagaccggttacatgatcgcgacga	Protospacer
* * * ** **************** ***.* 

6. spacer 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NC_014718 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence) position: , mismatch: 8, identity: 0.75

agcctgtcgctggtggccggtagcctgtcgct	CRISPR spacer
gtcgcggcgctggtagccgggagcctgtcgcg	Protospacer
. * .* *******.***** ********** 

7. spacer 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 8, identity: 0.75

gggaatgatggagccggatcaggctgggatat	CRISPR spacer
gggaatgatgaagccgcatcaggcatgggcgg	Protospacer
**********.***** *******  **... 

8. spacer 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gggaatgatggagccggatcaggctgggatat	CRISPR spacer
gggaatgatgaagccgcatcaggcatgggcgg	Protospacer
**********.***** *******  **... 

9. spacer 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

agcctgtcgctggtggccggtagcctgtcgct	CRISPR spacer
gcggtgtcgctgctggccggtaacctggagca	Protospacer
.   ******** *********.****  ** 

10. spacer 1.2|125103|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 9, identity: 0.719

agcctgtcgctggtggccggtagcctgtcgct	CRISPR spacer
gcctggacgctggtgtccggtagcctgccggc	Protospacer
. *. * ******** ***********.** .

11. spacer 1.6|125345|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgactgccggacgttctgcgacac-------ctgaaata	CRISPR spacer
cgactgccggacgtttcgcgacacggtcgtgc-------	Protospacer
***************..*******       *       

12. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MT741943 (Acinetobacter phage Meroveus, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

13. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MN648195 (Acinetobacter phage Konradin, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

14. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MN732883 (Acinetobacter phage Kimel, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

15. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MN662249 (Acinetobacter phage Stupor, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

16. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to NC_049493 (Acinetobacter phage vB_AbaP_Lazarus, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgacaaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

17. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to NC_049441 (Acinetobacter phage KARL-1, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

18. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MN782535 (Acinetobacter phage Lazarus, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgacaaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

19. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to NC_049479 (Acinetobacter phage vB_AbaP_Konradin, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

20. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MH460829 (Acinetobacter phage vB_ApiM_fHyAci03, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

21. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MN723850 (Acinetobacter phage Apostate, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

22. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to NC_049492 (Acinetobacter phage vB_AbaP_Kimel, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

23. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to MT409116 (Acinetobacter phage Octan, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

24. spacer 3.2|830194|36|NC_017262|CRISPRCasFinder matches to NC_049491 (Acinetobacter phage vB_AbaP_Apostate, complete genome) position: , mismatch: 9, identity: 0.75

attaaaggaaacccattttcccgccttgtcttgttc	CRISPR spacer
atatcgataaacccattttgccgccttgtcatgttg	Protospacer
**   .. *********** ********** **** 

25. spacer 4.1|1811944|32|NC_017262|CRISPRCasFinder,CRT matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 9, identity: 0.719

gggaatgatggagccggatcaggctgggatat	CRISPR spacer
gggacagatggagccggatcaggtcgtcagcc	Protospacer
****  *****************..*  *  .

26. spacer 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acggttgaccatgttggtgaccagacttttac	CRISPR spacer
gcgtagaaccatgttcgtgaccaggcttttcg	Protospacer
.**   .******** ********.*****  

27. spacer 4.6|1812247|32|NC_017262|CRISPRCasFinder,CRT,PILER-CR matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 9, identity: 0.719

acggttgaccatgttggtgaccagacttttac	CRISPR spacer
ccggttcaccatgttggtgaacaggatggcgc	Protospacer
 ***** ************* ***. *  ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 148498 : 161739 9 Thermus_phage(12.5%) NA NA
DBSCAN-SWA_2 1085148 : 1095632 10 Sinorhizobium_phage(33.33%) terminase NA
DBSCAN-SWA_3 1921671 : 1928449 6 Enterobacteria_phage(66.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage