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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014964 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence 6 crisprs RT,cas6,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,Cas14b_CAS-V-F,csx20,csx1,cas10,csm3gr7,csx19,DEDDh,cmr1gr7,cas14k,cas14j,casR 0 11 7 0

Results visualization

1. NC_014964
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_1 121660-124897 TypeI-B NA
48 spacers
cas3,cas5,cas7,cas8b1,cas6,cas4,cas1,cas2,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_2 126460-128029 TypeI-B NA
23 spacers
cas3,cas5,cas7,cas8b1,cas6,cas4,cas1,cas2,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_3 131252-133555 TypeI-B NA
34 spacers
cas3,cas5,cas7,cas8b1,cas6,cas4,cas1,cas2,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_4 135119-136882 TypeI-B NA
26 spacers
cas3,cas5,cas7,cas8b1,cas6,cas4,cas1,cas2,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_5 801340-801538 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014964_6 955169-956468 TypeIII NA
19 spacers
csx20,csx1,cas10,csm3gr7,csx19

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014964_1 1.18|122825|38|NC_014964|PILER-CR,CRISPRCasFinder,CRT 122825-122862 38 CP003186 Thermoanaerobacterium phage THSA-485A, complete genome 27908-27945 1 0.974
NC_014964_1 1.39|124230|38|NC_014964|PILER-CR,CRISPRCasFinder,CRT 124230-124267 38 NC_004979 Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence 252-289 1 0.974
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897276 Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence 11053-11088 6 0.833
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897280 Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence 10971-11006 6 0.833
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897275 Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence 11042-11077 6 0.833
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897277 Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence 11053-11088 6 0.833
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897278 Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence 10971-11006 6 0.833
NC_014964_6 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 955332-955367 36 NZ_KT897279 Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence 10971-11006 6 0.833
NC_014964_4 4.3|135281|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder 135281-135316 36 NZ_CP015333 Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence 19023-19058 7 0.806
NC_014964_1 1.7|122089|37|NC_014964|PILER-CR,CRISPRCasFinder,CRT 122089-122125 37 NZ_CP019190 Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence 128113-128149 8 0.784
NC_014964_1 1.20|122960|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 122960-122995 36 MN694760 Marine virus AFVG_250M661, complete genome 46244-46279 8 0.778
NC_014964_2 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder 126963-126998 36 NZ_CP021437 Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence 123645-123680 8 0.778
NC_014964_2 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder 126963-126998 36 NZ_CP021437 Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence 33833-33868 8 0.778
NC_014964_2 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder 126963-126998 36 NZ_CP015351 Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence 7249-7284 8 0.778
NC_014964_2 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder 126963-126998 36 NZ_CP015352 Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence 106305-106340 8 0.778
NC_014964_6 6.18|956335|36|NC_014964|CRISPRCasFinder,CRT 956335-956370 36 NZ_LR699117 Aquicella lusitana strain SGT-39 plasmid 4 49039-49074 8 0.778
NC_014964_1 1.20|122960|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 122960-122995 36 NZ_CP011133 Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence 61910-61945 9 0.75
NC_014964_1 1.48|124832|36|NC_014964|CRISPRCasFinder,CRT 124832-124867 36 NZ_CP031100 Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence 29453-29488 9 0.75
NC_014964_1 1.48|124832|36|NC_014964|CRISPRCasFinder,CRT 124832-124867 36 NZ_CP014147 Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence 6019-6054 9 0.75
NC_014964_1 1.36|124030|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT 124030-124065 36 NC_019924 Clostridium phage phi8074-B1, complete genome 44692-44727 11 0.694
NC_014964_3 3.27|133023|38|NC_014964|CRT,PILER-CR,CRISPRCasFinder 133023-133060 38 NC_010507 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08, complete sequence 1319-1356 11 0.711

1. spacer 1.18|122825|38|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 1, identity: 0.974

tgcaaaatttcagaaaatttcaggaaaggaggtatgcg	CRISPR spacer
tgcaaaatttcagaaaatttcaggaaaggaggtatgct	Protospacer
************************************* 

2. spacer 1.39|124230|38|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NC_004979 (Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence) position: , mismatch: 1, identity: 0.974

ccaccttttttacctcaattagttctatagtattaaag	CRISPR spacer
ccaccttttttacctcaattagttctatagtattaaaa	Protospacer
*************************************.

3. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

4. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

5. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

6. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

7. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

8. spacer 6.3|955332|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 6, identity: 0.833

-tttgacgttgtttcttgctccacttcttctttttgc	CRISPR spacer
atttcatgat-tttgtttctccacttcttctttttgc	Protospacer
 *** *.* * *** ** *******************

9. spacer 4.3|135281|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 7, identity: 0.806

gctggtgct--tattattggaaaggatataaacaagca	CRISPR spacer
--ttattcttgtattattgcaaaggatataaataagca	Protospacer
  * .* **  ******** ************.*****

10. spacer 1.7|122089|37|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019190 (Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence) position: , mismatch: 8, identity: 0.784

tgcatttccccaccttcgcggtaaagctccacgaacg	CRISPR spacer
tacctctccccaccttcgcgataaagatccacatccg	Protospacer
*.* *.**************.***** *****.  **

11. spacer 1.20|122960|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to MN694760 (Marine virus AFVG_250M661, complete genome) position: , mismatch: 8, identity: 0.778

agatactttttaacttctttatatatttaataaaaa	CRISPR spacer
aaaaactttttaaattctttatatattaaaaagtta	Protospacer
*.* ********* ************* ** *.  *

12. spacer 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 8, identity: 0.778

agctgttgt------tttgacatattcatcatcctttctgaa	CRISPR spacer
------tgtaaagcgtttgacatatttgtcatcctttctgaa	Protospacer
      ***      ***********..**************

13. spacer 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 8, identity: 0.778

agctgttgt------tttgacatattcatcatcctttctgaa	CRISPR spacer
------tgtaaagcgtttgacatatttgtcatcctttctgaa	Protospacer
      ***      ***********..**************

14. spacer 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015351 (Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence) position: , mismatch: 8, identity: 0.778

agctgttgt------tttgacatattcatcatcctttctgaa	CRISPR spacer
------tgtaaagcgtttgacatatttgtcatcctttctgaa	Protospacer
      ***      ***********..**************

15. spacer 2.8|126963|36|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015352 (Bacillus thuringiensis strain MYBT18246 plasmid p142098, complete sequence) position: , mismatch: 8, identity: 0.778

agctgttgt------tttgacatattcatcatcctttctgaa	CRISPR spacer
------tgtaaagcgtttgacatatttgtcatcctttctgaa	Protospacer
      ***      ***********..**************

16. spacer 6.18|956335|36|NC_014964|CRISPRCasFinder,CRT matches to NZ_LR699117 (Aquicella lusitana strain SGT-39 plasmid 4) position: , mismatch: 8, identity: 0.778

aattattgcagaggcaatggcaaaaggcttaagcaa---	CRISPR spacer
aattattgcagatgcaatggccaaag---tgggtaaaga	Protospacer
************ ******** ****   *..*.**   

17. spacer 1.20|122960|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011133 (Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

agatactttttaacttctttatatatttaataaaaa	CRISPR spacer
ttcttctttttaactttttaatatatttaatttaat	Protospacer
   * ***********.** ***********  ** 

18. spacer 1.48|124832|36|NC_014964|CRISPRCasFinder,CRT matches to NZ_CP031100 (Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence) position: , mismatch: 9, identity: 0.75

agtattaaaaattaaggaggtttaaaaaatggaaaa	CRISPR spacer
tttattaaaaatttaggaggtataaaaatgaataaa	Protospacer
  *********** ******* ******  .. ***

19. spacer 1.48|124832|36|NC_014964|CRISPRCasFinder,CRT matches to NZ_CP014147 (Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence) position: , mismatch: 9, identity: 0.75

agtattaaaaattaaggaggtttaaaaaatggaaaa	CRISPR spacer
tttattaaaaatttaggaggtataaaaatgaataaa	Protospacer
  *********** ******* ******  .. ***

20. spacer 1.36|124030|36|NC_014964|PILER-CR,CRISPRCasFinder,CRT matches to NC_019924 (Clostridium phage phi8074-B1, complete genome) position: , mismatch: 11, identity: 0.694

agtactaaagattgaggaggtataaacatggaagag	CRISPR spacer
aacactaaagttttaggaggtataaacatatggata	Protospacer
*..******* ** ***************. ... .

21. spacer 3.27|133023|38|NC_014964|CRT,PILER-CR,CRISPRCasFinder matches to NC_010507 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08, complete sequence) position: , mismatch: 11, identity: 0.711

aaatactcgccggcgcgaaccttaatcttcaccggcca	CRISPR spacer
tcatactcgccggcgcggaccttgatcttcgagaggtc	Protospacer
  ***************.*****.******.  .* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 86989 : 138188 34 Wolbachia_phage(17.65%) protease,integrase,transposase,tRNA attL 80562:80607|attR 88357:88402
DBSCAN-SWA_2 174529 : 182580 6 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_3 303919 : 311856 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 431877 : 480209 41 Bacillus_phage(25.0%) coat,transposase,tRNA NA
DBSCAN-SWA_5 865495 : 873783 10 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 1367188 : 1421749 53 Pseudomonas_phage(13.33%) transposase,tRNA NA
DBSCAN-SWA_7 1740426 : 1749204 9 Synechococcus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage