CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015675	Mesorhizobium opportunistum WSM2075, complete sequence	4 crisprs	csa3,DEDDh,WYL,cas3	5	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015675_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015675_1

3129517-3129966

Orphan

Consensus_repeat	Method
TTGCCCTGGGCCTGCTNN	CRT

12 spacers

The CRISPR arrays of NC_015675_1

>merge|NC_015675|1|3129517-3129966|CRT
TTGCCCTGGGCCTGCTGGTCCGTGGTGGTGCCGGCGCTGCCCTGGGCCTGCTCATCGGTCTGGACCTTTGCCTTGCCCTGGGCCTGCTGGTCCGTGGTGGCGCCGGCCTTGCCCTGAGCCTGCTCATCGGTCTTGATCTTGGGCTTGCCCTGGGCCTGCTGGTCCGTGGTGGCGCCGGCCTTGCCCTGAGCCTGCTCATCGGTCTTCATCTTGGTCTTGCCCTGGGCCTGCTGGTCCGTGGTGGCGCCGGCCTTGCCCTGAGCCTGCTCATCGGTCTTGATCTTGGGCTTGCCCTGGGCCTGCTGGTCCGTGGTGGCGCCGGCCTTGCCCTGGGCCTGCTCATCGGTCTTGATCTTGGGCTTGCCCTGGGCCTGCTGGTCCGTGGTAGCGCCGGCCTTGCCCTGGGCTTGCTCATCGGTCTTCATCTTGGCCTTGCCCTGGACCTGCTCA

>NC_015675|1|1|3129517-3129966|CRT
TTGCCCTGGGCCTGCTGG	TCCGTGGTGGTGCCGGCG
CTGCCCTGGGCCTGCTCA	TCGGTCTGGACCTTTGCC
TTGCCCTGGGCCTGCTGG	TCCGTGGTGGCGCCGGCC
TTGCCCTGAGCCTGCTCA	TCGGTCTTGATCTTGGGC
TTGCCCTGGGCCTGCTGG	TCCGTGGTGGCGCCGGCC
TTGCCCTGAGCCTGCTCA	TCGGTCTTCATCTTGGTC
TTGCCCTGGGCCTGCTGG	TCCGTGGTGGCGCCGGCC
TTGCCCTGAGCCTGCTCA	TCGGTCTTGATCTTGGGC
TTGCCCTGGGCCTGCTGG	TCCGTGGTGGCGCCGGCC
TTGCCCTGGGCCTGCTCA	TCGGTCTTGATCTTGGGC
TTGCCCTGGGCCTGCTGG	TCCGTGGTAGCGCCGGCC
TTGCCCTGGGCTTGCTCA	TCGGTCTTCATCTTGGCC
TTGCCCTGGACCTGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015675.1\|WP_013894155.1\|3130609_3131329_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_015675.1\|WP_013894160.1\|3133462_3133891_+\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|225220
NC_015675.1\|WP_013894156.1\|3131519_3131756_+\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894158.1\|3132242_3132428_+\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894152.1\|3128428_3129046_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|377026
NC_015675.1\|WP_013894146.1\|3122600_3123842_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NC_015675.1\|WP_013894159.1\|3132424_3133321_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015675.1\|WP_013894154.1\|3130284_3130503_+\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894143.1\|3119595_3120600_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NC_015675.1\|WP_013894163.1\|3135291_3135735_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|224575
NC_015675.1\|WP_013894162.1\|3134667_3135276_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NC_015675.1\|WP_013894148.1\|3124942_3125545_-\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894144.1\|3120814_3121882_+\|type-III-polyketide-synthase	unknown	unknown	gnl\|CDD\|238427
NC_015675.1\|WP_049802459.1\|3125833_3126445_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
NC_015675.1\|WP_013894147.1\|3123988_3124909_+\|isocitrate-lyase/PEP-mutase-family-protein	unknown	unknown	gnl\|CDD\|119340
NC_015675.1\|WP_013894151.1\|3127019_3128369_+\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NC_015675.1\|WP_013894157.1\|3131968_3132163_+\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NC_015675.1\|WP_013894161.1\|3133938_3134358_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|223394
NC_015675.1\|WP_013894145.1\|3121878_3122604_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|180466
NC_015675.1\|WP_083833368.1\|3126582_3127023_+\|DUF2231-domain-containing-protein	unknown	unknown	gnl\|CDD\|226695

Protein	Function_ID	Function_description	E-value
NC_015675.1\|WP_013894157.1\|3131968_3132163_+\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	9.53079e-12
NC_015675.1\|WP_013894160.1\|3133462_3133891_+\|DUF427-domain-containing-protein	gnl\|CDD\|225220	COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown].	4.57203e-44
NC_015675.1\|WP_013894152.1\|3128428_3129046_+\|flavodoxin-family-protein	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.4836e-09
NC_015675.1\|WP_013894146.1\|3122600_3123842_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	9.58533e-23
NC_015675.1\|WP_013894159.1\|3132424_3133321_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.64112e-31
NC_015675.1\|WP_013894155.1\|3130609_3131329_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.1909e-28
NC_015675.1\|WP_013894143.1\|3119595_3120600_+\|murein-L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	7.62217e-38
NC_015675.1\|WP_013894163.1\|3135291_3135735_-\|DNA-binding-protein	gnl\|CDD\|224575	COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only].	1.36463e-46
NC_015675.1\|WP_013894162.1\|3134667_3135276_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.58455e-35
NC_015675.1\|WP_013894144.1\|3120814_3121882_+\|type-III-polyketide-synthase	gnl\|CDD\|238427	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.	2.07311e-93
NC_015675.1\|WP_049802459.1\|3125833_3126445_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	2.01729e-32
NC_015675.1\|WP_013894147.1\|3123988_3124909_+\|isocitrate-lyase/PEP-mutase-family-protein	gnl\|CDD\|119340	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to form acetate and oxalate, an important pathway to produce oxalate in filamentous fungi. 2-methylisocitrate lyase (MICL) cleaves 2-methylisocitrate to pyruvate and succinate, part of the methylcitrate cycle for the alpha-oxidation of propionate.	1.36207e-79
NC_015675.1\|WP_013894151.1\|3127019_3128369_+\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	1.37268e-108
NC_015675.1\|WP_013894161.1\|3133938_3134358_-\|HD-domain-containing-protein	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.2567e-08
NC_015675.1\|WP_013894145.1\|3121878_3122604_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|180466	PRK06202, PRK06202, hypothetical protein; Provisional.	1.11159e-11
NC_015675.1\|WP_083833368.1\|3126582_3127023_+\|DUF2231-domain-containing-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	2.4892e-14

>NC_015675.1|WP_013894152.1|3128428_3129046_+|flavodoxin-family-protein
MQLTAFALNCSLKASDDKEKSSTDRLLADLLAALVPHGVKGEIVRSLDHDIKPGVLSDMGKGDDWPKLRQKILAADIFVLGLPIWLGQPSSVAKRVLERMDAFLDETDGQGRMPAAGKVALVAIVGNEDGAHHCHAACFQALNDVGFTIPANSGIYWVGEAMGGVNYVDLPETPEKVAAAIEMAASNAAHLASLLKGEAYPGVLR
>NC_015675.1|WP_013894151.1|3127019_3128369_+|sorbosone-dehydrogenase-family-protein
MSALLFSSRYIQRAAGLGLLCGSLLILPACSNDEPDPGDQVGANPTLPELTQYLVPPMHVASVVGWKQDETPTVAKGLQIKAFAKGLKHPRSLYTLPNGDILVVESVAPPGAAIKRPKDLVMGWIESMATSGGETEGSNRITLLRDTNGDGMPDVQDIFLDHLNSPFGVALVGNDLYVANTDAIVRYPYTTGDTKITAPGTILTPLPGGPIDHHWTKSLVASPDGSLLYVGIGSNSNITENGIQAEKDRAAIWEVDRATGRYRIFASGLRNPNGLSWEPRSGALWAVINERDELGPNLVPDYMTSVKDGAFYGWPYSYYGQHVDPRVMPQRPDLVAKAIPPDYALSSHVAPLGLVFYTGTNLPDPYRNGAFVGEHGSWNRKHFNGYKVVFVAFKDGHPEGKPQDVVTGFLDNDNKAHGRPVGVAVDKAGALLIADDVGNTVWRVTSASP
>NC_015675.1|WP_083833368.1|3126582_3127023_+|DUF2231-domain-containing-protein
MARAQSKLVVSRRPLHKTPMAVANACFIGTLLTDVTYWQSAEMMWADFSAWLLFAGLVVGVLAVLLALVDLFTGRLSGAARSAWPSLLGNLVVLVISFFNALVHSRDAWTSVVPTGLTLSVAAVIVLLLLCLLEWSFGRNRVEVVE
>NC_015675.1|WP_049802459.1|3125833_3126445_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MSMFKSKTPGSSSLQHDLFGAVDDLPEGFRYQPGLITPREETELARQLGALPFQAFDFHGHLANRRVVGFGLRYDYDRREVVQAPAIPDFLLPLREKVAALARRPAEAFAQVLINEYRPGAGIGWHRDKPHFEDVAGVSLLAPCSFRLRRKNGTKWDRRTIVVEPRSAYLMTGPSRTEWEHSIPPVDLHRYSITLRTLRSQNS
>NC_015675.1|WP_013894148.1|3124942_3125545_-|hypothetical-protein
MLSDPTVVILMYFILPLWLLAGFADWLCHRASHIETTTGAKESLIHLLMFVEVGIPLLAAMFLDINASIIAGMLVAFLVHEATAMWDVRYATTARTVTPVEQHVHSFLEMIPLMGIIIVISLHWGQFLALFGLGSEPARFNLVWKSEPLPVTYIVTMLVVILLFEFLPYIEEFVRGLRANAGKLVPEKARKGEPGQTARR
>NC_015675.1|WP_013894147.1|3123988_3124909_+|isocitrate-lyase/PEP-mutase-family-protein
MVRRLSWKSTIDHNAPLVLPSAGDALTARLIERAGFSAYQIGGFAMVAGMHAVPDIDLEQFGEKCAKAREIIEASDLPVLVDGDDGYGDVKNVTRTVRSYEAVGASALFIEDQKPPKRCGHMAGKKVVPPEFMEEKVRAAVAARSNPDFFLLARTDAREPNGIDDAIERGNRYLEAGADGVYVEGPTSLKELKTVGAAFRDVPLATSILERGGKTPWVSPSEMHEMGYDMILYPTTVLFRAIKSMQQALDDLREGKPLDPETSVDLKGFEDIVRMSEWAGIENRFMRSPHDEAGVIGTIKQKLTGG
>NC_015675.1|WP_013894146.1|3122600_3123842_+|FAD-dependent-monooxygenase
MSKLSTHDAIVIGAGPAGTSAALTLARHGWSVAIVEKSAFPRRKVCGEYISASNLVLLDRLEIGDAWRADAGPEIRRVGFFSGETCVEAPMPDAKYGPAKDGFGRALGRDILDALLLQAARSAGAQIFQPCRAVAIDRDGDMQRVRIQARGENSGDETTTLRAPVIIAAHGSWEPGSLPSQLEKINHPSDLLGFKAHFTGSTLAPDLMPLLAFPGGYGGMVLADHGRLSISCCIRREMLARLRGKHGSGHDGVASPVSAADVVFHHLMASCRGVSDALDGACLDGRWLAAGPIRPGIRACYERDIFRVGNAAGESHPIIAEGISMALQSGWLLARELSGAPSGRAGREAAGRRYQAAWRGLFSTRVHAAAAIARIALGPGGPLLMAAAVRNFPQTLTLGAHMSGKTRPVPGLA
>NC_015675.1|WP_013894145.1|3121878_3122604_+|methyltransferase-domain-containing-protein
MSELHQRRLVPEILDGLAADDPRAIASRRDLRRINALMFQARIMASLLRKFVPKPPRRILEIGAGDGTFMLAVARRMARHWPEVELVMLDRAGLLTAELSADLGRLGWTLEGITADVFDWAGGAGGKRFDAITVNLFLHHFDDASLVRLFSLLAPKAPLLLATEPLRSMPSLTAARLLPAIGVNDVTRHDAAQSVRAGFRGSELSGLWLAAGLKPLEERRAGLFSHVFVGVSDNAGFELNP
>NC_015675.1|WP_013894144.1|3120814_3121882_+|type-III-polyketide-synthase
MSANAYVNRIATAVPEHEVHQFYLRFAASMLAANRRRIFERMAGLAGIESRYSCFAPAIDPEGAYVDRAGTFVRGAFPGTAARMAMFCEAAPVLAKKGVDGLQLGDEASRITHLIVTTCTGFSAPGIDLDLVQSCGLSDRIERTMIGFMGCYAAINGLKLARHIVRSDPQSKVLLVNIELCTLHLNETTELEKLLSFCLWGDGCAAALVTAEPPGIKLDSFHCVVADERRDLMRWDVRDHGFDMVLSGQVPAAIHDALLSNQDAFLGGRPTEAIDLWAVHPGGRSILDAVERALNLTPAALKPSREVLRRYGNMSSATVMFTLQEMLKAPPGLLGCGMSFGPGLTAETMLFRTVS
>NC_015675.1|WP_013894143.1|3119595_3120600_+|murein-L,D-transpeptidase
MIRLLLVVAAALALACGATDAAKLDPNAVNQAQFATGEPRGVDPTVLRAQILLDRARFSPGLIDGRLSENFAKAVGAYQTANGLQADGKLTRETWDKLIAASARPALIAYELAPKDVRGPFTKRIPARMEKMASLRRLGYRNAMERLAERFHVSEKLLKMLNPGATFRKAGTMLMVPDVGRGDPPAAIAGVEVDKGARVVRVLDASGKWLAVYPASIGSDEKPAPSGTAEVRRVVHNPTYHYDPKFAFKGIRTKRPFTIAAGPNNPVGSVWIDLSIESYGIHGTPEPGKIGTTFSHGCIRLTNWDAEDLASMVQEGTTVNFKDEMADVGNEPPQ
>NC_015675.1|WP_013894154.1|3130284_3130503_+|hypothetical-protein
MAHLQRENDEEFERSGADVEPRIEVVEACGEWFVRVVGDDQQDSRQFELESIALAYAEGQRRRLKLANIVRL
>NC_015675.1|WP_013894155.1|3130609_3131329_-|Crp/Fnr-family-transcriptional-regulator
MLEPLYLQLSQHDDLSNEEKALLAETVAFGRDFEKGQDLVSTGSRPAYSTMLLDGLAARYKVLEDGGRQFTSLQVPGDFVDLHAFLLRKMDHGIVALSPCRVMFADHSKLKAITEQAPHLARLLWLDTLVDGAIHREWIVAMGRRSKTSHLAHLICELFVRLQVVKRTSGMSFNLPLSQAEMADVLGLSVVHMNRVIGSLKKTKVISWVNHTVTILDWDQIAELAEFDPTYLSMNNEPR
>NC_015675.1|WP_013894156.1|3131519_3131756_+|hypothetical-protein
MKRYYFDLYNGDGLVSDENGQLFESPEQARAEAIRILHDIARDEMPDRDLVKITLKMRDTGGTQVLEASLTLNAAWTA
>NC_015675.1|WP_013894157.1|3131968_3132163_+|DUF2934-domain-containing-protein
MDSREERIKRRAYEIWEREGRPAGREQEHWDQAVQEIEAEGPETERGPVVSDPTVGDGSKSSKA
>NC_015675.1|WP_013894158.1|3132242_3132428_+|hypothetical-protein
MRSPLSFLVLAATLALGACDNNSEPTKANTDTVNKNPQVDQDARPKSTTGGDQPATVPQNK
>NC_015675.1|WP_013894159.1|3132424_3133321_+|alpha/beta-hydrolase
MNSISYCDTPLLRIAHFSGGPQYGVPVVLLHGWPDDATTYARISPALHDAGFRTFSPWLRGCGPTSFLSKETMRSGEITAMAQDVLDFADALGLSRFAIVGHDWGARIAYLLASVFPDRIKCCAALSLGWQPGRLVTPSPEQAKAFWYQWFMATERGAEFVRKNRKEFARFQWDSWSPLGWFDDAIFDEVAKSFENPDWAEVTLHSYRVRWEEAEPDPRYAELARQATSVKIITVPTLTLHGGDDRVVLPRSSEGLEGHFTASYKRLVLDAVGHFPTREAPQEVSRLLVNFLDSHGKR
>NC_015675.1|WP_013894160.1|3133462_3133891_+|DUF427-domain-containing-protein
MQASGAISRHHAGSRHHAGQLAIEPFAGTVTVRFSDAIVAATERAKVLREEGHEPVFYIPFEDIYFDLFEKTNTTSESPPKGTASYWRVHAVGSSADDFMWAYETPDTAARAIARHGAFDPQKARIDVEPAEDKRHTPHVTE
>NC_015675.1|WP_013894161.1|3133938_3134358_-|HD-domain-containing-protein
MSIFYRAAKIAEEVHASQRDKTGQPYIEHCRRVVDAVETMDQKVVAYLHDVLEKGEGWNRTRLEEAGFGPTIASAVDALSRRDDEDYFAFVRRAASNPLALPVKRADLEDNIWQSRQVGASAAKYEEALRILDEEFSRR
>NC_015675.1|WP_013894162.1|3134667_3135276_+|cysteine-hydrolase
MSMPGLAYGPLGDRCMHICVDMQRLFAEPSQWATPWITRVLPQIERLVERRAPQTVFTRFLPARKPGQGVGTWRRYYERWASMTIESIGPEMTELLPTLAGYCPPAAIIDKHIYSPWFEGRLRALLVERDIDTLVITGGETDVCVLATVLGAIDFGYRVVLVTDALCSSSDATHDALLTVYHQRFAQQVETIEMETLLSSWI
>NC_015675.1|WP_013894163.1|3135291_3135735_-|DNA-binding-protein
MKSRLVNEISGQRTFVIVLDPGEEAFAALTDFAADRKVDGASLTAIGAFERATVGWFDPDAKTYRRIPVEEQCEVLSAIGDVALGDDGKPSLHVHAVLGLSDGTTRGGHLLDAIVRPTLEVTLVEAPGHLRRSKRPGLGVALIDLDA

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Crispr_ID: NC_015675_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015675_2

3303732-3303820

Orphan

Consensus_repeat	Method
CCCGCTCTTCAGGTATTCAGCCCCTTCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015675_2

>merge|NC_015675|2|3303732-3303820|CRISPRCasFinder
CCCGCTCTTCAGGTATTCAGCCCCTTCAAAAGGTCCAGTGGGCCTTTTGATCCGGGCTCCCCGCTCTTCAGGTGTTCAGCCCCTTCAAA

>NC_015675|2|1|3303732-3303820|CRISPRCasFinder
CCCGCTCTTCAGGTATTCAGCCCCTTCAAA	AGGTCCAGTGGGCCTTTTGATCCGGGCTC
CCCGCTCTTCAGGTGTTCAGCCCCTTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015675.1\|WP_013894325.1\|3293348_3294032_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|226101
NC_015675.1\|WP_013894335.1\|3302723_3303590_-\|glutathione-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|183298
NC_015675.1\|WP_013894338.1\|3305900_3306629_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235914
NC_015675.1\|WP_013894337.1\|3304928_3305888_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_015675.1\|WP_041164720.1\|3310867_3311179_-\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894332.1\|3300504_3301245_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380018
NC_015675.1\|WP_013894333.1\|3301462_3301708_+\|exopolysaccharide-production-repressor-protein	unknown	unknown	gnl\|CDD\|337910
NC_015675.1\|WP_013894341.1\|3308266_3308611_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NC_015675.1\|WP_013894343.1\|3309692_3310784_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270435
NC_015675.1\|WP_013894342.1\|3308807_3309407_+\|YdeI/OmpD-associated-family-protein	unknown	unknown	gnl\|CDD\|226851
NC_015675.1\|WP_013894329.1\|3296976_3298530_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_015675.1\|WP_013894339.1\|3306837_3307449_-\|FG-GAP-repeat-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894334.1\|3302304_3302607_+\|DUF1236-domain-containing-protein	unknown	unknown	gnl\|CDD\|369096
NC_015675.1\|WP_013894336.1\|3304000_3304906_+\|serine-protease	unknown	unknown	gnl\|CDD\|223343
NC_015675.1\|WP_013894327.1\|3295370_3296564_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375050
NC_015675.1\|WP_013894326.1\|3294459_3295230_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NC_015675.1\|WP_150111203.1\|3298611_3299064_+\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_041164151.1\|3311435_3313058_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_015675.1\|WP_013894346.1\|3313062_3313503_-\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013894331.1\|3300107_3300395_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015675.1\|WP_013894325.1\|3293348_3294032_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|226101	COG3571, COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	5.86345e-113
NC_015675.1\|WP_013894335.1\|3302723_3303590_-\|glutathione-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
NC_015675.1\|WP_013894338.1\|3305900_3306629_-\|SDR-family-oxidoreductase	gnl\|CDD\|235914	PRK07041, PRK07041, SDR family oxidoreductase.	1.35572e-108
NC_015675.1\|WP_013894337.1\|3304928_3305888_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.61357e-47
NC_015675.1\|WP_013894332.1\|3300504_3301245_-\|hypothetical-protein	gnl\|CDD\|380018	pfam17784, Sulfotransfer_4, Sulfotransferase domain. This family of proteins are distantly related to sulfotransferase enzymes. This protein in S. mansonii has been shown to be involved in resistance to oxamniquine and to have sulfotransferase activity.	1.34519e-74
NC_015675.1\|WP_013894333.1\|3301462_3301708_+\|exopolysaccharide-production-repressor-protein	gnl\|CDD\|337910	pfam11089, SyrA, Exopolysaccharide production repressor. SyrA is a small protein located in the cytoplasmic membrane that lacks an apparent DNA binding domain. SyrA mediates the transcriptional up-regulation of exo genes involved in the biosynthesis of the symbiotic exopolysaccharide succinoglycan. It does this through a mechanism which requires a two component system.	1.69416e-06
NC_015675.1\|WP_013894341.1\|3308266_3308611_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	6.45744e-07
NC_015675.1\|WP_013894342.1\|3308807_3309407_+\|YdeI/OmpD-associated-family-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	1.13157e-79
NC_015675.1\|WP_013894329.1\|3296976_3298530_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.5134e-74
NC_015675.1\|WP_013894334.1\|3302304_3302607_+\|DUF1236-domain-containing-protein	gnl\|CDD\|369096	pfam06823, DUF1236, Protein of unknown function (DUF1236). This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.	8.77724e-12
NC_015675.1\|WP_013894336.1\|3304000_3304906_+\|serine-protease	gnl\|CDD\|223343	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones].	1.52677e-43
NC_015675.1\|WP_013894327.1\|3295370_3296564_+\|hypothetical-protein	gnl\|CDD\|375050	pfam17210, SdrD_B, SdrD B-like domain. This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	1.19553e-06
NC_015675.1\|WP_013894326.1\|3294459_3295230_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	3.05496e-127
NC_015675.1\|WP_041164151.1\|3311435_3313058_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_015675.1\|WP_013894343.1\|3309692_3310784_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270435	cd13717, PBP2_iGluR_putative, The ligand-binding domain of putative ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily. This group contains glutamate receptor domain GluR. These domains are found in the GluR proteins that have been shown to function as L-glutamate activated potassium channels, also known ionotropic glutamate receptors or iGluRs. In addition to two ligand binding core domains, iGluRs typically have a channel-like domain inserted in the middle of the GluR-like domain. Animal iGluRs mediate the ion flux in the synapses of the CNS and can be subdivided into several classes depending on the neurotransmitter specificity and ion conductance properties. Their plant homologs have been shown to function in light signal transduction and calcium homeostasis. The GluR proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.11098e-27

>NC_015675.1|WP_013894335.1|3302723_3303590_-|glutathione-dependent-disulfide-bond-oxidoreductase
MTDYTPPKVWTWNKPSGGAFASINRPIAGPTHDKELPFGKHPLQLYSLATPNGVKVTVMLEELLARGHEGAEYDAWLIRINDGDQFGSGFVEVNPNSKIPALMDRSGATPMRVFESGSILVYLAEKFGEFLPTEQPARAEVLSWLFWQMGSAPYLGGGFGHFYAYAPEKFEYAIDRFSMEVKRQMDVLDRRLAETEYLGGKDYSIADMAVWPWYGGLALGRMYNDSAEFLSVHEYKHVQRWAKVIDERPAVRRGRMVNRAFGEPALQLHERHDASDFDTKTQDKLAAE
>NC_015675.1|WP_013894334.1|3302304_3302607_+|DUF1236-domain-containing-protein
MKHYLATSAAAAIVLMGGIGTALAETVVVQPQDETVVREYVKKEPLASVNLLGVELKLGSPVPDRVELREVPNVRYRVAVINDQTVLVDPDTREIVEVLH
>NC_015675.1|WP_013894333.1|3301462_3301708_+|exopolysaccharide-production-repressor-protein
MYFGHFLVGMSVTTVVIAVWTYLATGSFWEALAWTVVTLLVLQVGYFMLVVRLIYRRAHHAATSEDTVNVVPPLHRDGVWF
>NC_015675.1|WP_013894332.1|3300504_3301245_-|hypothetical-protein
MTLKLIGAGFGRTGTWSTFAALNRLGLPSYHMQEVILNKANKGHLDFWRKVANSAPGSQHDWNRVFANYTATVDNPGCCVWKELMVAYPDAKVLLTLHPRGAEAWYESTIDTIYFTENVWQFKILEWLTPFGRKFGDMSRKLVWGRTLNGVMEDRAKAVARYNAYVEEVMAAVPPQKLLVYKVTEGWAPLCEFLGVALPNEPFPNLNDRETIKKIIRDIVKGSYIMLGLTIAAIVAVVAALWWWLG
>NC_015675.1|WP_013894331.1|3300107_3300395_-|hypothetical-protein
MAPREKPRTDMEEDGPEADGPTIEQQDWDAVKGGQILPDSVPENGDIRYETEKEGELPEEDDDNAYQDSDDALPDDDEEAAIRRDLNREGGFDET
>NC_015675.1|WP_150111203.1|3298611_3299064_+|hypothetical-protein
MNWWIGCCWIAGSICFAVLDHRARKLAGKRWLSEWPWRLVTYFALGGVFAAIGYAPIFLHHFVEAIVGVYSHPPTLRSLAVLFVWGATAAAAFGFLVLARRTLREIGSLQHGVRSMAAFRTIACAMVLVAIAIGILGTGFLFGLDIQRSH
>NC_015675.1|WP_013894329.1|3296976_3298530_+|WD40-repeat-domain-containing-protein
MNRLADRVLALLLAAVAIGCLARIYPLVATLAWGRASVSQDAASLRLLVFSVAALACLVGALLFWAGLLPGRPAHLASAPLFGRTAEVRETGRPGLRKVFFALPLVVLAALAVDRLGPWHDGGGGVASELKANEPKPDEPRLAEPKPDEPKSQDVASTPPAVEPAPPAPPPVAANPPSTPMPPAPPQTPAAPPPEVAIIPPPTVAPLPPPPPSAPTQPDGHRDAVVWLAVAPDGQSIMSASTDHVIKLWDVGGKHLIRNLGVHKDMARTALYMPDGVSALTAGDDGEIVLRKLADGTVLHVFQSGQNGGVNKLAISPDGKHAVSGHDTGNVIVWDLVNNSVLHVLTGHGWSISAVAVSPDGKQALSGSIDGTLKLWDIDSGKQLRSWHGHEQGTYGAVFTTDGHHLITGSGDLTIKVWDLDSGREVKRFEGHEGTVYTLALSADGKRLLSGSLDGTARLWDMETGNQIAMFDSQTGPIYAVAFAPDGTVLTGGYDRTIRDWPATGGDGVVLFAGAPG
>NC_015675.1|WP_013894327.1|3295370_3296564_+|hypothetical-protein
MHDFGLVEIMLSAAAIIAVAASVVWLLRRARSRRRTARRADPANDYAVRGDWGRSTGTVNYSSFVYFDVDRDGKYGVGDRPMAGIMVRLFDGQGGFVASARTNNVGFANFAMSTSSANAAIRLPGAYGFSVSVPPGWRSPSANVTQSQRFWLEPGSPTGLVSQDLPRPVGLAPPRSLAGRMAADGTATLSVMASGQELERRALAPDTAFRLELADEADAVVIAGGGLDRQLALSPYPTDLGLMSPQTLPGKSALRTIGFDDVTGRGFRKIPCGHAGLQWRNLNAMAQDHTKGSEGYVNGNVSGDHVAYTSSGYPAEFWSETPFGFHSVLLSAAWLKSEGEMALIECWLGEQLVASDALALSALSPLHYAPMLREITRVRLSTRHHWQMVLDDLVLTR
>NC_015675.1|WP_013894326.1|3294459_3295230_+|exodeoxyribonuclease-III
MKIATFNINNINSRLENLLAWLAAARPDVVCLQELKARDMQFPRTALADAGYGAVWKGEPTWNGVAILARGAEPILTRDALPGDDGDKQSRYIEAAVNGIVIACLYAPNGNPRPGPKFQYKLAWHERLNAHAEQLIDTGLPVVLAGDYNIVPEPRDIYATRSYDDNALVQPESRAAFAALLEQGWTDALRKKHPNETLYTFWDYRRNRWPRDAGLRLDHILLSKTLARRLKGAGIDRDVRGQDGASDHAPVWVEVK
>NC_015675.1|WP_013894325.1|3293348_3294032_+|alpha/beta-fold-hydrolase
MTTFLFDGHDTAPVTILLAHGAGASMDSPSMTATAKALATAGLQVARFEFHYMAARRYGHRKPPPRAETVNPEYIKAIADLRARGVTGPLIIGGKSMGGRVASMVADEMFAKGEIVGLVCLGYPFHPPGKPEQLRTKHLIGLKTPTLIFQGTRDEFGTPDEVAGYGLSDSIEVVWLEDGDHDLKPRKSVSGLSTADHLRTLAETVRDWEARALANRADFRTGRDQKR
>NC_015675.1|WP_013894336.1|3304000_3304906_+|serine-protease
MTANPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRDDGLVLTIGYLITEAEEVWLTTHDGRVVPAHALAYDQESGFGLVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEARIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGALLGIGSLRLQMSRAGEVADINMIVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGQVVVMSVTEGGPAAKAGLREGDVISEVRDGAVDGLADFYRKLWESGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQLQ
>NC_015675.1|WP_013894337.1|3304928_3305888_+|LysR-family-transcriptional-regulator
MHPRLLKTFLAVARSRNVTRAAEAVHLAQSSVSDQVQSLEAELGAALFTRSKAGLELTPAGLALKPVAEELLRLDAEARAAVQAAAGQTSGQVTVGALETIASARLAPWLPGFQAHHPGIIVRMKVAGSGALLRQLEDGDIDVVFCFEPRHFAKDTSDQRFARRTIMAEPLALVAAPGQGTAPGDIAALAKLRFVATEPGCIYRHMVDTAFVEAGVDAPAIAAEVGSIGVIARLVAAGAGFGLVPRIAVSDAIARGDIVELPWPGSARAAPLTMIWRRRRVQPPALRQLLAAARDTLVPTERSGAESTKRSNALFANSS
>NC_015675.1|WP_013894338.1|3305900_3306629_-|SDR-family-oxidoreductase
MSIPSQKILIVGGGSGMGLALARRCVERQVEVIIAGRSETRLQQAREALGNPDKLDVAVVDLTREDQVAALFARVGGLDHIVSTAADIEGAYRLLPELDLEAAQRVVESKLFGPLLLAKHGAPQLTPAGSMTFVSGIAAYRPAARGSVVAAVNAALEGLVRALAVELAPIRVNAVSPGWVDTTIWTQVAGDRKAEMLGAMAERLPVGRIGQPEDIADAIAFLIGNGFTTGTTLHVEGGHRLA
>NC_015675.1|WP_013894339.1|3306837_3307449_-|FG-GAP-repeat-protein
MRSLLFALAFLLPITALAEPIETQKIITALTGDFNGDGAPDLAVVIETEPSDPMDIHFFLRDKEHNYLKPVETVHEQIGGEWNGYDRPGYENSDTEPELTMLPNGSIKFYLPAPPIGSERTNQTLTIAYRNGTFIVAGFAYDSQDYLKENVASACDYNVLTGKGISSKQQPDGSTKHKTVSAEGRIVAFKDWNSGDAFTACEE
>NC_015675.1|WP_013894341.1|3308266_3308611_-|VOC-family-protein
MAIQTIFAHVSCSDLEASIGWYEKLFGKAPQRRPMPGLAEWQFSDSAEVQLFEDKDKADTSTLTLGVLPLAPERLRLVDAGLEPGPIEKADHFWIMRMRDPDGNLMVFASAERD
>NC_015675.1|WP_013894342.1|3308807_3309407_+|YdeI/OmpD-associated-family-protein
MAPVKIDPDKVREFPDAASFYAWLGQHHATETEVWIKVHKVGSGLKSITPKEAIDVVLCFGWIDAVRKGLDEKSFLQRYTPRGRKSIWSKINIDNVARLIEEGRMTEHGLKQVEAAKADGRWARAYGGSREMKIPDDLRAAIDAEPAAKAMLEKLSAQNRFALAFRTHNMKTEAGRKKKIETFVAMLKRGETIHPQGKK
>NC_015675.1|WP_013894343.1|3309692_3310784_+|transporter-substrate-binding-domain-containing-protein
MALFLTAIVACAGTGAAAQTSPDLSLPADLSTKEISIGIKAAPPFAFKLQDGTWSGLSIDLWQKIAGRLKLRFRYVEVPTVQDQIDGVVSGKFDAAMAAITVTADREKAVDFTQPFFTTGLGIATPLNNQPSWRPVMRALTSFGFLQAVLALIVISVVVGVLIWMFERRHNDDFGGGVAKGLFSSMWWSTIAATQASTGDFGPRTVPGRVLAALWMMGSIIVIAVFTAGVTSVLTVTQMEGMVQGESDLAAVRVGAVQNSSTASYLDSTQIRHQDFATIQQGLDALRAGKVDALVHDKPLLGWLVGQNYATSLQVLDATFDQQQYAIALPLGSKLRKPLDVTLLQTMESDWWKQAVFQYLGEK
>NC_015675.1|WP_041164720.1|3310867_3311179_-|hypothetical-protein
MQRRSTRWMVALAGVSLTMLVVAQSGAEAAVTRSEYCSRLGLQLDSAIQTQAEPGANASEIAEATALQDKANRFCAERKQAQGIRAYANALKLLGVTPVDLNQ
>NC_015675.1|WP_041164151.1|3311435_3313058_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIRLESISKQNGRQLVFIEASASLQKGEKIGLVGPNGAGKTTLFRMITSQEQPDEGQVQVDRGVTIGYFSQDVGDMAGHSAVAEVMNGAGPVSDVAAEMAELEAAMADPDQADRMDEIIEKYGEAQHRFEELDGYALDGRAREVLDGLGFSQEMMDGDVGKLSGGWKMRVALARILLMRPDVMLLDEPSNHLDLESLIWLEQFLKGYDGALLMTSHDREFMNRIVNKIVEIDAGSLTAYSGNYEFYQQQRAIADKQQQAQFERQQAMLAKEIAFIERFKARASHAAQVQSRVKKLDKIDRVEPPKRRQIVNFEFQPAPRCGEDVVTLKNVHKAYGSRTIYDGLDFQVRRRERWCIMGVNGAGKSTLLKLVAGASDPDTGTVARGPSVKMGYFAQHAMELLEGERTVFQTLEDNFPQAGQAPLRALAGCFGFSGDEIEKKCRVLSGGEKARLVMALMLFDPPNLLVLDEPTNHLDITTKQMLIEALSQYEGTMLFVSHDRHFLAALSNRVLELTPEGIHTYGGGYTEYVERTGQEAPGLRG
>NC_015675.1|WP_013894346.1|3313062_3313503_-|hypothetical-protein
MNISSGLRSIAVAAIATAGISFASAAHADSGTIRFAVYKAAFFIGGSGGEGTLTFHGKSYPISVGAVSGGLAFGVSKTYFRGTVRHIRRARDVTGVYGAAGGGGAIGKGAQVIVMTNDKGAQLELTGRQVGMQVNADLSGMSISLK

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Crispr_ID: NC_015675_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015675_3

3620464-3620550

Orphan

Consensus_repeat	Method
TGCCGTTGAACCCGGTTCAACGGCAACTC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_015675_3

>merge|NC_015675|3|3620464-3620550|CRISPRCasFinder
TGCCGTTGAACCCGGTTCAACGGCAACTCCGCCGGAGTGATTTGATCCAAGGCGTTGCTGCCGTTGAACCCGGTTCAACGGAAACTC

>NC_015675|3|2|3620464-3620550|CRISPRCasFinder
TGCCGTTGAACCCGGTTCAACGGCAACTC	CGCCGGAGTGATTTGATCCAAGGCGTTGC
TGCCGTTGAACCCGGTTCAACGGAAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015675.1\|WP_013894651.1\|3624480_3625779_-\|DUF3419-family-protein	unknown	unknown	gnl\|CDD\|227670
NC_015675.1\|WP_049802463.1\|3613629_3614151_-\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|224634
NC_015675.1\|WP_013894637.1\|3610714_3611557_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181334
NC_015675.1\|WP_013894655.1\|3632105_3632315_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_015675.1\|WP_013894638.1\|3611690_3612653_-\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
NC_015675.1\|WP_013894648.1\|3621655_3623035_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NC_015675.1\|WP_013894645.1\|3617821_3619042_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143482
NC_015675.1\|WP_013894640.1\|3613318_3613633_-\|DUF2293-domain-containing-protein	unknown	unknown	gnl\|CDD\|227873
NC_015675.1\|WP_013894646.1\|3619118_3620297_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|225501
NC_015675.1\|WP_041164774.1\|3632476_3633196_+\|DnaJ-family-molecular-chaperone	unknown	unknown	gnl\|CDD\|224002
NC_015675.1\|WP_013894654.1\|3628175_3631925_-\|hydantoinase-B/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|215358
NC_015675.1\|WP_013894642.1\|3614359_3615382_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|316372
NC_015675.1\|WP_013894647.1\|3620596_3621397_-\|glycoside-hydrolase-family-25-protein	unknown	unknown	gnl\|CDD\|119375
NC_015675.1\|WP_013894650.1\|3623800_3624484_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_015675.1\|WP_013894644.1\|3616668_3617598_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015675.1\|WP_013894643.1\|3615381_3616299_+\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NC_015675.1\|WP_013894652.1\|3625914_3626748_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227207
NC_015675.1\|WP_013894649.1\|3623071_3623380_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|225635
NC_015675.1\|WP_013894653.1\|3626979_3628131_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376443
NC_015675.1\|WP_013894639.1\|3612802_3613312_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368289

Protein	Function_ID	Function_description	E-value
NC_015675.1\|WP_013894651.1\|3624480_3625779_-\|DUF3419-family-protein	gnl\|CDD\|227670	COG5379, BtaA, S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism].	0
NC_015675.1\|WP_049802463.1\|3613629_3614151_-\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|224634	COG1720, COG1720, Uncharacterized conserved protein [Function unknown].	2.03834e-47
NC_015675.1\|WP_013894637.1\|3610714_3611557_-\|SDR-family-oxidoreductase	gnl\|CDD\|181334	PRK08263, PRK08263, short chain dehydrogenase; Provisional.	1.61645e-164
NC_015675.1\|WP_013894655.1\|3632105_3632315_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00137561
NC_015675.1\|WP_013894638.1\|3611690_3612653_-\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.70094e-111
NC_015675.1\|WP_013894648.1\|3621655_3623035_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	2.02153e-37
NC_015675.1\|WP_013894645.1\|3617821_3619042_+\|alanine-racemase	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	1.11306e-93
NC_015675.1\|WP_013894640.1\|3613318_3613633_-\|DUF2293-domain-containing-protein	gnl\|CDD\|227873	COG5586, COG5586, Uncharacterized conserved protein [Function unknown].	8.96413e-42
NC_015675.1\|WP_013894646.1\|3619118_3620297_-\|lytic-murein-transglycosylase	gnl\|CDD\|225501	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane].	1.583e-121
NC_015675.1\|WP_041164774.1\|3632476_3633196_+\|DnaJ-family-molecular-chaperone	gnl\|CDD\|224002	COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones].	1.99264e-49
NC_015675.1\|WP_013894654.1\|3628175_3631925_-\|hydantoinase-B/oxoprolinase-family-protein	gnl\|CDD\|215358	PLN02666, PLN02666, 5-oxoprolinase.	0
NC_015675.1\|WP_013894642.1\|3614359_3615382_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	4.13653e-25
NC_015675.1\|WP_013894647.1\|3620596_3621397_-\|glycoside-hydrolase-family-25-protein	gnl\|CDD\|119375	cd06413, GH25_muramidase_1, Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.	5.20182e-110
NC_015675.1\|WP_013894650.1\|3623800_3624484_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.05892e-20
NC_015675.1\|WP_013894644.1\|3616668_3617598_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.45525e-15
NC_015675.1\|WP_013894643.1\|3615381_3616299_+\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	1.09302e-142
NC_015675.1\|WP_013894652.1\|3625914_3626748_-\|hypothetical-protein	gnl\|CDD\|227207	COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones].	1.47161e-41
NC_015675.1\|WP_013894649.1\|3623071_3623380_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	4.81756e-42
NC_015675.1\|WP_013894653.1\|3626979_3628131_+\|hypothetical-protein	gnl\|CDD\|376443	pfam01048, PNP_UDP_1, Phosphorylase superfamily. Members of this family include: purine nucleoside phosphorylase (PNP) Uridine phosphorylase (UdRPase) 5'-methylthioadenosine phosphorylase (MTA phosphorylase).	7.29433e-12
NC_015675.1\|WP_013894639.1\|3612802_3613312_+\|hypothetical-protein	gnl\|CDD\|368289	pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.	0.000887807

>NC_015675.1|WP_013894646.1|3619118_3620297_-|lytic-murein-transglycosylase
MRLRSQALAALFLCAMALPAVAQECGGDFETWKQGVAAEAKAAGVGPVGLDALEDANFDERALARDRAQGVFTQTFVQFSNRMISAYRLKQGAANMKKYADIFARADQQFGVQAPVITAFWALETDFGAVQGDFHTLSALVTLSHDCRRPQLFRQQLVPLLELIDRGVLPADVTGAWAGEIGQTQILPSDYLARGVDGDGDGKIDLRGSVPDVIMTTANKVLSRGWKRDEPWIQEVRVPDEMPWDQTGRTNKLPLTQWAQWGITNPDGSPLVDKGLKAGLALPMGRKGPAFLTYDNFDVYLEWNQSFTYALTAANLAARLDGAQPLDPRSPEPGLDNNQMKALQTKLEARGYDVGTVDGILGTNTREAVRKEQMRLGLPVDGWPTPELLGKL
>NC_015675.1|WP_013894645.1|3617821_3619042_+|alanine-racemase
MQRFENAREAALALRPDDPVYCFRPQVLKADARQFMGMFPGKTAYAVKTNGEQIVLKTLVEAGVTAFDVASPGEFSAVRAVSPDAEMLYMHPVKAQSDIKLALEKYAIRVISLDHEDEITKLTRVVRALDIDPGAISVFVRIQTKGSAAYELSKKFGAGPAYAVELAERLNRTGYKVGLCFHVGSQIEDPDTYERALASADWVRNRLTFDIAGLDVGGGFPAEYGHDPNRKQIEMPSLGQIMSRLSGDLKEYQFDQIPLVAEPGRVIVARCLSLIVRVLLRKGKRLYINDGIWASLSDSWTGKITLPARFIPDPAIRSRNGEEKNIVPFKVCGATCDSVDILSRPFWLPETVDTGDWIEIGHIGAYSLSLRTRFNGFYPDTFVEVATPFDEGDAPQGFASLETMAD
>NC_015675.1|WP_013894644.1|3616668_3617598_-|DMT-family-transporter
MAMAATAPPRGPMTLADWGQLLLLGAIWGGSFFFARIAVAELHPLVLVLFRVAIAAIALQLYLGLRGPSFRLALPHAGLFFLLAFTNNVVPFSLIFAGQTKLGAGVASVLNATTPFWTLILANALTSDEKLSWNKLAGIALGVAGTAVMIGPGLLAGLGGPVWAKFALIGASLSYGVALMVARRFKGVPSPVIATGQMTASTIIMIPIVLFAHGPAGLFSASPPVWTAVFALALLSTAFAYILYFNLVASAGATNASLVTLVVPASAMLLGFMFLGERLELFEIGGVVLIGLGLVTIDGRLFVKRVALP
>NC_015675.1|WP_013894643.1|3615381_3616299_+|methylenetetrahydrofolate-reductase-[NAD(P)H]
MNQFRFSRRPDIGDKVRVSFEFFPPKSDEMEARLWDTVTRLEPLKPKFVSVTYGAGGSTRERTARTISRILQETSLTPAAHMTCVDAARHEVDAVIQEFADMGVKRFVALRGDPAAGVGTAYRPHADGYANGAELVGALKSAGDFDISVSAYPEKHPESPDFATDIDMLKRKVDNGATRAITQFFFDNDLYERYVERARRAGIYIPIVPGILPVHNFTQVANFSARCGALVPAWLAERFDGLQNDPQTHALVASAVAAEQVLDLVERGVGDFHFYTMNRADLVFAICHMIGIRSHEAEVAGSAAA
>NC_015675.1|WP_013894642.1|3614359_3615382_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MHVSLDTMVDTLKAAAESSRLRILALLSRGDLTVSDLTEILGQSQPRVSRHLKLLLEAGLIGRYQEGSWAFFRLSDADSARDFVMGLVSGIRGADPQVERDLERLASVKRKRQDRATEYFSVNAASWDHIRSLHVPDRAVEAAMLKLVGRRPFQSMLDLGTGTGRLLEIFSPLYRRGIGIDMSREMLTVARANLDKAGVSNAQVRQGDIFSPPVERDAFDLVTIHQVLHYLDDPARAIHEAARLLRPAGRLVIVDFAPHTLEFLREEHAHMRLGFSDRQIGEWFAEAGLDLEDAQEFEPRGGNEARLTVKLWLGRDRRLLIADPANDSQQTKVTSIGEIA
>NC_015675.1|WP_049802463.1|3613629_3614151_-|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MFETREGERRLDHDPAAMPPDAGVVFIGRITSPWTTRESCPKNMRAARETGQPAMLTIDAPYREGLRGLERASHVVILSWLHHAPRNLIVQKPRHAAEAKGVFGLRSPARPNPVGLHVARLVGLDIATGRIDLDAIDVLDDTPVIDIKPYFASTDAIAEATVEGREEPNRSQR
>NC_015675.1|WP_013894640.1|3613318_3613633_-|DUF2293-domain-containing-protein
MTAPTGRRRAIAKALTALLPLAPYADMEKIRTDAGSVHMKTLPPSIAVWLAAIAHIRHMHTDYEKLLTDGYDRDSARFFVIEQTNVVLTRWRATRLLDADDEDE
>NC_015675.1|WP_013894639.1|3612802_3613312_+|hypothetical-protein
MGRLEIVVAALSIFAAAGEASAQCVKEGGELCQGGQTYRCEKTGSELTPIFQNLPCAASMPAPTLTGTWVGNGHQSPAGDAGADWSIAMRIGDGSGSIDYPSLGCGGSLSQTSRDDGSAEFHESITYGQDKCIDGGDITVRFFKAKLSWTWVGHADGRPYNAVAVLTRQ
>NC_015675.1|WP_013894638.1|3611690_3612653_-|D-amino-acid-aminotransferase
MSQTTAIENSKPLPAVSEHHVDPHSYPDGIAFLDGQYLPMSQAKVSVLDWGFLHSDATYDTVHVWDGRFFRLDLHLDRFFGGLEKLRMTIPFDRDGVAEILHDCVALSGHRAAYVEMLCTRGASPSFSRDPRQAINRFMAFAVPFGSVANAEQLRRGLRVAISDKVRIPPVSIDPAIKNYHWLDLVRGLYDAYDRGAETALVLDFNGNVAEGPGFNVFCVKEGKLSTPAIGVLPGITRRTVFDLCAESGLAVTAADVSVAALREADEVFITSTAGGIMPVTEIDGAVISDGKVGPVTSRLMALYWQKHDDPAWSSAVNYR
>NC_015675.1|WP_013894637.1|3610714_3611557_-|SDR-family-oxidoreductase
MTNKVWFITGSSKGFGRVWAEAALARGDRVAATARDAGTLADLVEKYGDNIAAIKLDVTDKKAVDAAIAEAHRRFGRLDVVINNAGYGHFGAIEEVSEQEARDQIETNVFGALWVTQAALPIMRAQRSGHIIQISSIGGVNAFASLGLYHASKWALEAFSQSLSIEVAEFGIHVTLVEPGGFSTDWAGPSAKVSQAIEAYAPVRAKMAERRANSVAGDPEATGPAMLAIVDAAEPPLRVFFGDGGLPMIRQEYANRLATWEKWDEVSIMAQGAKKNRKAA
>NC_015675.1|WP_013894647.1|3620596_3621397_-|glycoside-hydrolase-family-25-protein
MRRLAALFMLTLLGACSTVDDLSPLSPSAPGSATVAVRAPRFGDSKPHEWDSGAPWNYAVHGTDVSKYQASVDWPAARASGISFAFIKATEGGDRFDEYFNEHWARTRAAGIPRAAYHFFYFCTPAAVQARWFIQNVPVDRSSMPPVLDMEWNPKSPTCRLRPDAATVRAEMSTFLEIVERHYGKKPIIYTSVDFFDDNELSTFRGYPYWLRSVAGHPREKYGSHPFTFWQYTGTGIVPGMTGKSDINVFNGSEAAWNKWLRQNTR
>NC_015675.1|WP_013894648.1|3621655_3623035_+|serine-hydrolase
MRIVVKIVKWLLGLIVLAVAALFAWLYIAPPELIRVGSGYSAKIVCSNVFIAGRDPNEVLAVDVQAPGHPLLRLMRVSVDKNRGTVSAGLLGFLGKSVAVARDGLGCASVPDGDVGKARRTAVHVEPAATSRDTLWPEGERVDASQDPVLSKLLDDAALTGAGMRAIVVVKNGRVVAERYGDGFSAKTPLLGWSMTKTVNAAIIGTLIKDGKMTIDNKGLFAPWKTDGRAAISLADMMAMSSGLEFNEDYGDVADVTRMLYLEPDMASFAESKPLTDEVGKVFSYSSGTAVMLSRLWQDAIGDKAKALTLPRSALFEPLGMHSAVLETDEQGTFVGSSYLYATAHDWARFGQFLLQGGVWNGNQILPAGFVDWMREPAPASNVYGKGQLWIEAPGDEEKPGAGVAAGLPKDTYWMQGHDGQTVTIIPSEQLVVVRLGLTPAKLGYRPRTMVGALVKALH
>NC_015675.1|WP_013894649.1|3623071_3623380_-|HigA-family-addiction-module-antidote-protein
MLMTARKPATVGEILSEEFMQPLGLTQAALADAMGVQRKHVNELCNDRRSVTAATALILARVFGNSPDFWLNVQRRSDLWAVMNSPDERARVDRAKPLATAA
>NC_015675.1|WP_013894650.1|3623800_3624484_-|class-I-SAM-dependent-methyltransferase
MSTTELPASPEFKANHAELMDGVYRWQRHIYDLTRKYYLLGRDRLIAGLDVPAGGSVLELGCGTGRNIILAARRYPDARFFGLDISSEMLETAGKAIDREGLSNRVTLARGDATDFDAGALFETERFDRVFVSYSLSMIPGWEKTVSAALAALAPTGSLHIVDFGQQEGLPGWFRTLLRGWLRKFHVTPRESLREVLESQSRRTDASFHFRTLYRGYAWLAVIKIAI
>NC_015675.1|WP_013894651.1|3624480_3625779_-|DUF3419-family-protein
MTLGYPLAAKQMGNHLAMTDVSSDLVFRRGKEVGKAVYQNRPLSKAGISERLFAFLFSGLVYPQIWEDPDVDMEAMQLGQGHRVVTIASGGCNILAYLTRSPARVDAVDLNAAHIALNRMKLEAVRRLPSQGDLFRFFGAADTRHNSEAYDRFIAPHLDPVSRHYWERRNWRGIRRIGVFDRNFYQTGLLGLFIAMGHRTAKFFGVDPAGIMQARNIGEQRRFFNEELAPVFDRKLLKWATSRKASLFGLGIPPAQYDSLITSGDGTMASVLKARLEKLACDFPLENNYFAWQAFARRYPEPGEAALPAYLEKHNYDTIRGNIDRVAIHHANLIEFLAGKDAGTVDRFILLDAQDWMTDDQLNALWSEITRTASTGARVIFRTAAEPSLLPGRVSTSLLDQWDYQNEASRDFSARDRSAIYGGFHLYVKRPA
>NC_015675.1|WP_013894652.1|3625914_3626748_-|hypothetical-protein
MAKNVTSTTAPTERKISGLGWVRDLPDPRDQLYSAPLPVLKALPAAVDLKPEFPIYDQGRIGSCTANALAGAVQFDRLKSKQMPDFVPSRLFIYYNERKIEGHVANDAGAQIRDGIRTLQKQGACPEAEWPYDDTPAAYDGGPFPKNSKPATQPKKACYDDASKYVITSYQRLTPILNQLRGCLAAGYPFVFGFTVFDSWYSQNPRPATIPLPGANDSAIGGHAVMCVGYDNATSLFKIRNSWGANVGKKGYFFMPYAYLTDGSMASDFWVINAVKA
>NC_015675.1|WP_013894653.1|3626979_3628131_+|hypothetical-protein
MIADRSWVQRNLGFDPLRDPPPATTFAVPSIAKSKGTEDFQREIIEFDSESSSGLQFLAFTKSTGLSRYKDIPWPQGLAPQTAGNAGGSSGGPLPKADVLVVTWTVDEGHALSRVLTPGKDSRDDYLSYTHRFAEISKNMRPGCPALQAKRLGAYWMTTIGGKSVVVFKSDSHMSQDGPKVPNIEVWRQIIEEVAPKLVITTGTAGGIGKQFEVGDVVVSALVRFDCLAKFKKEPFAGLHYASAVADTKYFAKARQLFKTNASQLPQDNTRVPKIFVAAPSALRSCVVTTDFFGFDTSDNHYHLQGLGAVSEMGDAILGLVASEMGPAAPRWLAIRNVSDPQIKADGLTLKQQATMAAQIYKGFGRWSSICSAVTCWASIVAE
>NC_015675.1|WP_013894654.1|3628175_3631925_-|hydantoinase-B/oxoprolinase-family-protein
MAAKWDFWIDRGGTFTDVVGRDPQGGLHPRKLLSENPEAYADAAIQGIRDLLGLEPGAAVPPGRIGDIKMGTTVATNALLERKGDRVLLLITKGFRDALRIAYQARPDIFAKEIILPEQLYERVIEINERVLADGCVERLLDIAACRPAIEQARADGIDAVAIVFMHAWKYPDHEKAVAKVCRKLGFSQVSVSHEVSPLIKLVGRGDTTVVDAYLSPILSRYVQKVAGELGAAGETDQSPRLMFMMSSGGLTAANMFQGKDALLSGPAGGVVGMVETAKSAGFDKVIGFDMGGTSTDVAHYDGEYERAFDTEVAGVRVRAPMMRIHTVAAGGGSILHYEAGRFRAGPDSAGANPGPAAYRRGGPLAVTDANVMLGKLQPDFFPAIFGPDQDQPLDVEAVRAKFSALAAEIGDGRSPEAVAEGFITIAVENMANAIKKISVQRGYDVTEYLLNCFGGAGGQHACLVADALGMEAVLIHPFSGLLSAYGIGLASVFASRQQALLKPLAEESRTEIGSLIANLRNTVIAELAAQGIAENAVAARPVLHIRYDGTDTTLPVNFESDSIFQAKRDFEIAHKAQFGFVYDDKPMIVETVGVEGTDTGGGGRDESDSETEDLALSPSQSREIFTEGEWRPSGIFRREALKPGNRIAGPALIIEPNQTIVIEPGWQAEITARNHVLLRRIERKRRQAALGTEADPVMLEVFNNLFMSIAEQMGVTLQNTAYSVNIKERLDFSCAVFDHTGALVANAPHMPVHLGSMDRSVETIIRLNSGDIHPGDVFALNAPYNGGTHLPDITVVTPVFSLPLEGRVAAQRPGGVLSEGTARTSSTASATPSAAFGGTSPSRGEEILFYVASRGHHADIGGTAPGSMTPLATTVDEEGVLFDNFRIVDRGKFRETELQTLLTDHRYPARNPHQNIADLKAQIAANEKGVAELRKMVAHFGLDVVEAYMGHVQDNAAESVRRVLERLPGTSRYEYPTDTGQIIKVKISVDRQKREATVDFTGTSPVMKNNFNAPEPVARAAVLYAFRVMVEDMIPMNAGCLRPINIIIPDGCMLKPAYPAAVVAGNVETSQHVTNALFGAMGAMANAQGTMNNLTFGNKQYQYYETICSGSPAGQMNSGRGFAGTSGVHTHMTNSRLTDPEVLELRFPVVLEDFHIREGSGGTGKWSAGDGTKRTIRFLEKMECAILSSHRNRPPQGLDGGGDGEVGSTKVRRKDGRVDTLKACDQTVLEAGEAVILTTPTPGGFGKG
>NC_015675.1|WP_013894655.1|3632105_3632315_+|hypothetical-protein
MKKLILASVSALALLGVAACSDSGTGTDNTTTQSTNPPASEPMKPAAPADNSTKPAEPAPATPAPAPAQ
>NC_015675.1|WP_041164774.1|3632476_3633196_+|DnaJ-family-molecular-chaperone
MSIWDRLGEFITRVSSSATSGVADVVEAVRTVFSGDADLRRRVAFSVAMIALSAKMAKADGIVTQDEVRAFQEIFEVPPKETRNVARLFDLAQRDVAGFETYAERMAQMCGSGHSNCVMLEDILDGLFHIAKADGLVHEHEGTFLHRIAEIFRIDEAHYEAILARHVNLGAGDPYVVLGIERGKPFEEVRKRYRKLVSDNHPDRLIARGLPQEFIKIATTRVAAINAAYEMIERGLRHV

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Crispr_ID: NC_015675_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015675_4

6806036-6806111

Orphan

Consensus_repeat	Method
GCGATCGCGACGGCGACGCCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015675_4

>merge|NC_015675|4|6806036-6806111|CRISPRCasFinder
GCGATCGCGACGGCGACGCCGTCGCTGGGAGCCGTGACATGACACAGGCCACTGCGATCGTGACGGCGACGCCGTC

>NC_015675|4|3|6806036-6806111|CRISPRCasFinder
GCGATCGCGACGGCGACGCCGTC	GCTGGGAGCCGTGACATGACACAGGCCACT
GCGATCGTGACGGCGACGCCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015675.1\|WP_013897251.1\|6804017_6804281_-\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013897249.1\|6801629_6802970_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NC_015675.1\|WP_049802485.1\|6818147_6818921_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270420
NC_015675.1\|WP_013897244.1\|6795332_6798824_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223664
NC_015675.1\|WP_013897262.1\|6816959_6817952_+\|fumarylacetoacetate-(FAA)-hydrolase	unknown	unknown	gnl\|CDD\|226324
NC_015675.1\|WP_013897246.1\|6799612_6800047_-\|hypothetical-protein	unknown	unknown	unknown
NC_015675.1\|WP_013897258.1\|6811403_6812393_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
NC_015675.1\|WP_013897265.1\|6820336_6821527_+\|O-succinylhomoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|168979
NC_015675.1\|WP_041164438.1\|6812681_6813752_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226668
NC_015675.1\|WP_013897256.1\|6809926_6810688_-\|Stf0-sulfotransferase	unknown	unknown	gnl\|CDD\|226848
NC_015675.1\|WP_049802429.1\|6804549_6805539_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_015675.1\|WP_013897245.1\|6798825_6799485_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_015675.1\|WP_013897266.1\|6821563_6822715_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133012
NC_015675.1\|WP_013897261.1\|6815380_6816667_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NC_015675.1\|WP_013897250.1\|6803101_6803998_+\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NC_015675.1\|WP_013897264.1\|6819020_6820115_-\|2'-deoxycytidine-5'-triphosphate-deaminase	unknown	unknown	gnl\|CDD\|181028
NC_015675.1\|WP_013897260.1\|6813851_6815384_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_015675.1\|WP_041165157.1\|6800210_6800561_+\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|226033
NC_015675.1\|WP_013897253.1\|6805568_6806024_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NC_015675.1\|WP_013897248.1\|6800557_6801637_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|240089

Protein	Function_ID	Function_description	E-value
NC_015675.1\|WP_013897249.1\|6801629_6802970_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.73615e-124
NC_015675.1\|WP_049802485.1\|6818147_6818921_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270420	cd13702, PBP2_mlr5654_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which serve as initial receptors in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.58744e-128
NC_015675.1\|WP_013897244.1\|6795332_6798824_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	2.58179e-83
NC_015675.1\|WP_013897262.1\|6816959_6817952_+\|fumarylacetoacetate-(FAA)-hydrolase	gnl\|CDD\|226324	COG3802, GguC, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_015675.1\|WP_013897261.1\|6815380_6816667_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	1.74286e-168
NC_015675.1\|WP_013897258.1\|6811403_6812393_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.92876e-44
NC_015675.1\|WP_013897266.1\|6821563_6822715_-\|glycosyltransferase	gnl\|CDD\|133012	cd02520, Glucosylceramide_synthase, Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.	5.34712e-80
NC_015675.1\|WP_041164438.1\|6812681_6813752_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226668	COG4213, XylF, ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism].	9.3531e-155
NC_015675.1\|WP_013897256.1\|6809926_6810688_-\|Stf0-sulfotransferase	gnl\|CDD\|226848	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown].	1.20304e-37
NC_015675.1\|WP_049802429.1\|6804549_6805539_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.64054e-86
NC_015675.1\|WP_013897245.1\|6798825_6799485_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.2486e-64
NC_015675.1\|WP_013897265.1\|6820336_6821527_+\|O-succinylhomoserine-sulfhydrylase	gnl\|CDD\|168979	PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed.	0
NC_015675.1\|WP_013897250.1\|6803101_6803998_+\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	5.30616e-136
NC_015675.1\|WP_013897264.1\|6819020_6820115_-\|2'-deoxycytidine-5'-triphosphate-deaminase	gnl\|CDD\|181028	PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate deaminase; Provisional.	0
NC_015675.1\|WP_013897260.1\|6813851_6815384_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_015675.1\|WP_041165157.1\|6800210_6800561_+\|DUF952-domain-containing-protein	gnl\|CDD\|226033	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown].	2.1117e-61
NC_015675.1\|WP_013897253.1\|6805568_6806024_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	6.32448e-14
NC_015675.1\|WP_013897248.1\|6800557_6801637_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|240089	cd04738, DHOD_2_like, Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.	1.05379e-178

>NC_015675.1|WP_013897253.1|6805568_6806024_+|GtrA-family-protein
MDRMRSALPSDFSRMLRFGAVGLLNTALGYTLILAGLWLGLGDIVSNAAGYAAGLTLGFFLNRRWTFTAAGGFRPGTAVRYAITFIVAYSANLGIVIAAMSAGIIENPFVHLAGNCLYTVIFYLGSSRFVFVGGADDAVAATNAKWPGVAT
>NC_015675.1|WP_049802429.1|6804549_6805539_+|glycosyltransferase-family-2-protein
MLSVVVPCYNERDGVAELHRRVSAACLEQSPSYEIVLIIDGATDGTREAIFELAEKDDHVVAIDLARNYGHQIALSAGLEFCRGERILILDADLQDPPELLGAMMAKMDEGFDVVYGQRVKRDGESWFKLASASMFYRLLGRMVDVEIAQDSGDFRLMSRRAVDHLNAMPERYRFIRGMVSWIGLRQVAFAYERHRRFAGTTHYPLKKMVLLAVDAMTSFSIVPLRFASLLGMMFGVLGLVVLGYTLFEWSRGNVVPGWTSLAAIMLIMGSVQLLVLGIFGEYLGRMYMETKRRPLYFVNEIVSRDQPAKDSDLPVHRLQEMAKRAARG
>NC_015675.1|WP_013897251.1|6804017_6804281_-|hypothetical-protein
MSALTRFLGDSPFRVILKLLVVSFLVGLVMNAFGWSPMDVFYGIQKFFMDLWNLGFRAIDRFLGYILLGAAIVVPAFILLRIANYRK
>NC_015675.1|WP_013897250.1|6803101_6803998_+|histone-deacetylase
MPLQIVHHPDYDAGFAVNHRFPMSKYPLLMEALRARGLAGALNTAEPASASWLKLAHAADYVDQVIGCFVPEKIEREIGFPIGPRVSRRAQLATGGTILAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVAALMLLAEGAAHNILVIDLDVHQGDGTADILGDEPRAFTFSMHGDRNYPVRKIASDLDVALPDGTGDAAYLERLAAILPELSAMRHWDIVFYNAGVDVHAQDRLGRLALSDNGLRSRDEMVIGHFRANGIPVCGVVGGGYSTDVPALAARHAILFEAASGYA
>NC_015675.1|WP_013897249.1|6801629_6802970_-|MATE-family-efflux-transporter
MDKGATTADARPFVVTNRSVLAIAVPMTLAYLTTPMLGLVDTAVIGQFGDAALLGGLAAGALVFDVVFTSLNFLRSGTTGLVAQAFGRGDPLEEQAVFWRAVLIAVVAGIVMAALSPLIAVGGQWFMDAGPRVSEAMGVYIRIRLLAAPFSLINYAILGYVLGRGEGGLGLVLQLVLNGINIALCFLLGLELGWGVAGVAWATVSGEFLAMLLGLAIVIRRFRTAPPLPRHRLLDMSAFLRMMSLNRDIMIRSFSLLAAFALFTRQGAQFGTVTLAANAVLMNFFLVAGYFLDGFATAAEQLAGRAVGARAEQPFRQAVRLTLFWGFGLAGAATLVLLLAGADLVAVVTTSQEVRSVADIYLPWAAFTALSGVLAFQMDGVFIGATWSRDMRNMMLLSFLVFAAALLTLAPAFGNHGLWAALHVFLLARGFSLLTILQLRMRTAFS
>NC_015675.1|WP_013897248.1|6800557_6801637_+|quinone-dependent-dihydroorotate-dehydrogenase
MSVLDRLGQKLLFTFDPETAHGLSIAALRCGLPVGARIVRDVSLKVSLCGLDFPNPLGMAAGYDKNAEVPDALLGLGFGFAEVGTVTPLPQAGNPKPRIFRLTGDEAVVNRLGFNNEGHAAAEKRLAARKGRGGIVGVNIGANKDTADRIGDYERGVARFAPYASYLTVNISSPNTPGLRNMQAREQLGELLSRVMAARAAASAQPPVFLKIAPDLVEAELEDIAAEVTEKRIDGVIVSNTTISRPALRSGDVARETGGLSGKPLFERSTIVLAKMRRLLGPERTIIGVGGVDTTDAALEKIRAGADLVQLYTSMIYAGPALPARIIAGMASFMEKGRLKSIRELRDSNLDRWASKPLS
>NC_015675.1|WP_041165157.1|6800210_6800561_+|DUF952-domain-containing-protein
MSQFIYKITPQAAWREAETNGRFTGAAIDVADGFIHFSTASQVRETAAKHFSGQTDLLLVAIDDASLGDALKYEVSRGGALFPHLYGVLDLKAVKWVEPLPLGADGTHQFPPLEGQ
>NC_015675.1|WP_013897246.1|6799612_6800047_-|hypothetical-protein
MRLQHILIPAALVSLVAASAYSEETDRYRLEKSATGYIRMDTQTGAMSICEERSGQLVCKMAADERAAFQDEVDRLQTSMKALDERVTKLENSLSARLESKLPSEEEFNKTMSYMERFLRGFMGIVKDMDKDKGDGAELNSQKT
>NC_015675.1|WP_013897245.1|6798825_6799485_-|response-regulator-transcription-factor
MPSGYSFVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASGLSGLVSLRGVHPSVPLVVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQSVLAGDIAAPVGIDLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLSKIGGDPLQPTS
>NC_015675.1|WP_013897244.1|6795332_6798824_+|hybrid-sensor-histidine-kinase/response-regulator
MQGLFIVIIAIAYVTLLFAIASLGDRRSAVSGPGRARPFIYALSLAIYCTSWTFFGSVGLSSERGLEFLGIYTGPVLVFVFGFPLLNRIVRLAKTEKITSIADFLGARYGKSFTVAAIATLIATIGAVPYIALQLKAISGSVSLMVEHYTGSPPSFDPFVSDISLVVAMLLALFAVLFGTRHADATEHQDGLVLAVAVETVVKLAAFLAIGLMVTFLIFGGPGDMFAKLAQNGQVRQAMGYNTSLATWLVLTGLSGFAIILLPRQFYVTIVENRGEAELRTATWVFPLYLVAINLFVLPIAFAGLSLVGTGTSSDLYVLSLPLFSGHDVLAMTAFIGGLSAATAMVIVESVALSIMISNDLVIPLFVRRLLKTSTSENEDWSTLILNVRRGAIFILLFIAFLYYRESTNSARLSSIGLMSFAAIAQFAPALVGGLIWRGANGRGAALGMVAGILVWGYTLLLPSLVAPDTDMVVHGLFGFEALRPQALFGTVAEPLNHGVLWSLSINTLFFVLGSLSRASVPLERIQASIFVPRDAGPMPSLRRFRTAITVNDLKDTIGRYLGVERTERSFQSFEKTNGTTLLGKEQASMDVIRFSEQLLASAVGSSSARLILSLLFRRHDRESSDAFRLLDDATEALQHNRDLLQIALDQMEQGITVFDRDFRLICWNRQYRALFDLPDDMGQVGVSLDQILRHLAERGDIPADQRVTMLNRLTSFVSPWQMELKTSGRILELRSNPMPDGGIVATYADISGRVEQDLALKRANESLEQRVKTRTIELTRVNEELAQAQMLAEEANLGKTRFLAAAGHDILQPLNAARLYCSSLIEKAGKGPAGKAAVNIESSLESVETILGAVLDISRLDAGAMKPDDSAFTLDGLLSQIGNDFRPLAAEKKLGLTIMPSSLTVVTDRNLLRRLIQNLVSNAIKYTRHGRILVGVRRRGELAEIQVIDTGIGIAGDKLNTVFREFTRLDEGAREAEGLGLGLSIVDRIARVLRLEIRIFSNPGKGTRFSVVLPVAAMQEPRREIEKTRGPVRAAASLAGLHVLCIDNDARILEGMRLLLEGWGCYVETVSGSRDLETAAIRRPDIVLADYHLDGETGLDIIARLRAAHGSDLPAVLVTADRSNEVRAVASELEIPVINKPLKPAVLRSMMARVRPLASAAE
>NC_015675.1|WP_013897256.1|6809926_6810688_-|Stf0-sulfotransferase
MKGVAILTEARSGSEWLGSLANSTGLLGNSAEWLDTANLGFKPKSFDELLSAVIDRGGTANGRFAVKLFPRHLHWSQAKYGADFLAECVRRHTMGLILLERRDRLRQAISYCRAKASGGWRSTMDRADLVPQYDFAGICRAYFLIEQSYAFWEAYLRLADLPHDHFFYEDLLDDPRPYVASVARQLSVEMPDCEFKTNLRLQRDTHTEEWVERFQDDARSGDVLAHLPEQVAPRNFENFTRFLLKKQMRIGQA
>NC_015675.1|WP_013897258.1|6811403_6812393_-|LysR-family-transcriptional-regulator
MATLRNPGGISEGYNELPGDGETLLRSGLSLRHMRMIVALDDHGRVSAAAQVMNISQPAASRMIAEMEAVLEVKLCERLPRGVTLTPYGKALARRARSILLEMREVDREISELKAGKGGSVFLGAVTAPAIELAVPAIREIRRIYPRIEITMQVETSNVLARELIATRHDFIIARIPDDLNPRLFESRVIGVEKACLIVRRGHPLTRASVVRLEDTAAYDWVFQSGGSPLRQAMESNFLNRNIALPDRILNTSSLLLTLVMVAQSDAIAPVSIQVAKFIQNPDGLAGAIDVVQTEFDIEVRPYSLITVKNRVLSPAAKMLHDFILREVG
>NC_015675.1|WP_041164438.1|6812681_6813752_+|sugar-ABC-transporter-substrate-binding-protein
MKIIKTLAAVAALGIAAMTYSAHAADKGLVGVLMPTKTSQRWINDGDAVKSQLEALGYTVDLQYAQDDIPNQLSQLENEITKGPKALIIASIDGTTLSDALQKAADAGVVVVAYDRLIKKTANVDYYTTFDNFGVGVIQANSLVKGLKERFPNTKPWNVELFGGSPDDNNAFFFYNGAISVLQPLIDDGSIKIKSGQMGMDKVGTLRWLAATAQARMDNLLSANYSDGSRVDGVLSPYDGLSRGITASLRAVGYGTDAQPWPIVTGQDAETASVKLIITGEQYSTVFKDTRDLAKATVGLVDKVLSGGKPDGLDTKTYNNDVKVVPSILLTPHEVDKSNYQKLVVDSGYIKAEDLN
>NC_015675.1|WP_013897260.1|6813851_6815384_+|sugar-ABC-transporter-ATP-binding-protein
MTSTILEMRDITKTFPGVKALSNVNLSVEEGEIHAVVGENGAGKSTLMKVLSGVYPAGTYDGQIIFQDQECQFKGIHDSEHKGIVIIHQELALVPMLSITENIFLGNEHARHGVIDWDANEARTAALLKKVGLKEDPKTLITNIGVGKQQLVEIAKALSKDVKLLILDEPTASLSEKDSQALLDLLLEFKRQGMTSILISHKLNEINRVADKVTVIRDGRTIETLAKKDISEDRIITSMVGRSLDDRYPPREPKIGEVVFEVKNWSVYHPLHAERQVIKGIDINVRKGEVVGIAGLMGAGRTEFAMSLFGRSYGRRITGEVLLKGKPVDVSSVSKAVQHGIAYVTEDRKTYGLNLIDHIKHNITLANLGGVSRHSVIDDMRELAVANDYRKKTNIRASSVYQLTGNLSGGNQQKVVLSKWLFADPDVLILDEPTRGIDVGAKYEIYTIIARLASEGKAIVVISSEMPELLGITDRIYVMNEGRIVGEMPAADASQEKIMRAIVRGEGKAA
>NC_015675.1|WP_013897261.1|6815380_6816667_+|sugar-ABC-transporter-permease
MSTDSAPAPQGNIAEEQRPRIAVSALATNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLVIVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIICLIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGICQALLGGGSSVGPLPGDFKMLSSGFIPDVIGPLTLVPPVVNAAGKTILGSGVTLHMTTVVLGLIAVLAYAYFGVRTRRKRERHGYEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLITLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINTERLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMGVNVDWQQVVKGLVLLGAVIFDVYNKNKA
>NC_015675.1|WP_013897262.1|6816959_6817952_+|fumarylacetoacetate-(FAA)-hydrolase
MLISQILDDAETIRVVARSGGKTRIINGARSVYSLAMEAARTGVGLVALIERKGLGETVDIDAAYKKGRLLSPINHPDPAHLHLTGTGLTHLGSAATRDSMHKKLSTDGEEQLTDSMKMFRMGLEGGKPAKGQTGVQPEWFYKGNGTMAVAPGAALLSPAFAKDAGEEPEVAGIYVIGDDGAPFRVGFTLSNEFSDHVTERVNYLFLAHSKLRNASFGPEILIGDLPSDIRGTSRIVRDGKTLWEKPFLSGEANMSHTIGNLEHHHFKYSAFRQPGDVHVHMFGTATLSFADGVKTEAGDVFEIEAGDFGLPLRNPLEIEQPVKVAVKAL
>NC_015675.1|WP_049802485.1|6818147_6818921_-|ABC-transporter-substrate-binding-protein
MQISKWILSAAGAAMLAMAAGSLSAQAAEKLKIGTEGAYPPFNTITSDGKVVGFDIDIANALCAQMKVECEIVTQDWDGIIPALQAKKFDAIIASMSITEERKKQVAFTNKYYTTPLALVALKDSDIASTEPAALAGKTVGAQASTTQATYDQDVYGKAGAEAKLYPTQEEAITDLQNGRLDAVISDKFVLMDWMKKASDGCCKLVGDVKGTETQAGIAVRLEDTALRDKLNAAIDAIVADGTYKKIQAKYFDFDIY
>NC_015675.1|WP_013897264.1|6819020_6820115_-|2'-deoxycytidine-5'-triphosphate-deaminase
MRQTGILPDQDIAALFQSGALKSPRSLDADQIQPASLDLRLGDKAWRVRASFLPGPNHTVSDKLDRLKLHEINLVEGAVLETGCVYIVPLLESLALPADISASANPKSSTGRLDIFTRVMTDRGHEFDKIAAGYNGPLYLEVSPRTFPIVARTGSRLSQIRFRTGNALLSEAELHELHRAEMLVATEPPNISGGGIALSIDLNGDKDGLVGYRGKHHTGLVDVDKRAAQDVVDFWEPIHKSGAGELVLDPDEFYILVSQEAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHSASGGTGSRAVLEVRSHEVPFILDHGQIVGRLVYEHMLKRPQALYGTDLGSNYQAQGLKLSKHFRPAR
>NC_015675.1|WP_013897265.1|6820336_6821527_+|O-succinylhomoserine-sulfhydrylase
MSNKKRDWKPQTALVHGGTLRSQFGETSEAMYLTQGYVYETAQAAEARFKGEEPGFIYSRYANPTVDMFEKRMCALEGAEDARATASGMAAVTAALLCSVKAGDHIVAARALFGSCRWVVETLAPRYGIEATLVDGTDIANWEKAVKPNTKLFFLESPTNPTLEVVDISAVAALANSIGARLVVDNVFATPLQQKPLQLGAHIVVYSATKHIDGQGRCLGGVILSDKKWIDENLHDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAGRIADFLAGQPQIARVIYPGRADHPQADIVKKQMSGGSTLICLDVKGGKQAAFALQNALDIVLISNNLGDAKSLITHPATTTHKNLSDEARTELGIGPGTLRLSVGLEDTDDLLEDIAQALRAAK
>NC_015675.1|WP_013897266.1|6821563_6822715_-|glycosyltransferase
MELTLIAASLSTALILSNAASISLAASQLKRRTTIAPPGGKSQPVSIVIPSRGVEPFTHETLERAFSLDWPRYELIFCVAHADDPVVKLINRAIARFPKVPARLLIGDDRVSANPKLNNCVKGWEAARHNWVVLADSNVLMPRDYIQHLMAAWRADTGLVCSTPIGSRPDGFWAEVECAFLNTLQARWQYAGEALGLGFAQGKSMLWNKPMLDASGGIRALAAEIAEDAAATKLVNGLGLRVNLVASPFEQPLGRRRLGEIWSRQARWARLRRVTFPLFFTPEVLTGAVVPLALALVAAASAGFSLWATALAVLAAFYLPECALAWSKGWYLSPRMVAAIMVRDLILPAMWTRGWLGGAVDWRGNAMTIRTKAAELEETPSSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015675_1	1.1\|3129535\|18\|NC_015675\|CRT	3129535-3129552	18	NC_015675.1	4798333-4798350	1	0.944
NC_015675_1	1.3\|3129607\|18\|NC_015675\|CRT	3129607-3129624	18	NC_015675.1	5745721-5745738	1	0.944
NC_015675_1	1.5\|3129679\|18\|NC_015675\|CRT	3129679-3129696	18	NC_015675.1	5745721-5745738	1	0.944
NC_015675_1	1.7\|3129751\|18\|NC_015675\|CRT	3129751-3129768	18	NC_015675.1	5745721-5745738	1	0.944
NC_015675_1	1.9\|3129823\|18\|NC_015675\|CRT	3129823-3129840	18	NC_015675.1	5745721-5745738	1	0.944

1. spacer 1.1|3129535|18|NC_015675|CRT matches to position: 4798333-4798350, mismatch: 1, identity: 0.944

tccgtggtggtgccggcg	CRISPR spacer
tccgtggtggtgcaggcg	Protospacer
************* ****

2. spacer 1.3|3129607|18|NC_015675|CRT matches to position: 5745721-5745738, mismatch: 1, identity: 0.944

tccgtggtggcgccggcc	CRISPR spacer
tccgaggtggcgccggcc	Protospacer
**** *************

3. spacer 1.5|3129679|18|NC_015675|CRT matches to position: 5745721-5745738, mismatch: 1, identity: 0.944

tccgtggtggcgccggcc	CRISPR spacer
tccgaggtggcgccggcc	Protospacer
**** *************

4. spacer 1.7|3129751|18|NC_015675|CRT matches to position: 5745721-5745738, mismatch: 1, identity: 0.944

tccgtggtggcgccggcc	CRISPR spacer
tccgaggtggcgccggcc	Protospacer
**** *************

5. spacer 1.9|3129823|18|NC_015675|CRT matches to position: 5745721-5745738, mismatch: 1, identity: 0.944

tccgtggtggcgccggcc	CRISPR spacer
tccgaggtggcgccggcc	Protospacer
**** *************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015675_4	4.1\|6806059\|30\|NC_015675\|CRISPRCasFinder	6806059-6806088	30	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	106364-106393	8	0.733

1. spacer 4.1|6806059|30|NC_015675|CRISPRCasFinder matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 8, identity: 0.733

gctgggagccgtgacatgacacaggccact	CRISPR spacer
caggcaatccgtgacatgacacagtccaca	Protospacer
   * .* **************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3814156 : 3860565

Rhizobium_phage(14.29%)

tRNA,head,tail,terminase,portal,integrase,capsid

attL 3819152:3819169|attR 3825925:3825942

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013894827.1\|3814156_3815485_+\|tRNA	proline--tRNA ligase	A0A2K9L297	Tupanvirus	2.5e-09	27.4
WP_013894828.1\|3815481_3816768_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_174324799.1\|3816764_3817448_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_013894830.1\|3818128_3819379_+	peptidase M50	NA	NA	NA	NA
3819152:3819169	attL	NA	NA	NA	NA
WP_041164789.1\|3819399_3820143_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_013894832.1\|3820609_3821971_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013894833.1\|3821930_3822179_-	hypothetical protein	NA	NA	NA	NA
WP_013894834.1\|3822184_3823285_-	hypothetical protein	A0A0U4B0I3	Pseudomonas_phage	2.5e-18	43.0
WP_013894835.1\|3823286_3823676_-	hypothetical protein	A0A1X9SGY5	Bradyrhizobium_phage	2.5e-21	50.8
WP_150111277.1\|3823666_3823987_-	HNH endonuclease	A0A191ZBJ6	Pseudomonas_phage	4.1e-30	62.9
WP_013894837.1\|3824031_3824553_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	3.3e-45	55.4
WP_013894838.1\|3824638_3824884_-	hypothetical protein	NA	NA	NA	NA
WP_013894839.1\|3824883_3825141_-	DUF2312 domain-containing protein	A0A240F4X4	Ochrobactrum_phage	1.2e-21	64.7
WP_013894840.1\|3825160_3825355_-	hypothetical protein	NA	NA	NA	NA
WP_013894841.1\|3825372_3826527_-	DNA polymerase III subunit beta	NA	NA	NA	NA
3825925:3825942	attR	NA	NA	NA	NA
WP_013894842.1\|3826523_3826886_-	hypothetical protein	NA	NA	NA	NA
WP_013894843.1\|3826885_3827560_-	hypothetical protein	A0A0A8IKA5	Aurantimonas_phage	3.7e-25	38.7
WP_013894844.1\|3827556_3828297_-	hypothetical protein	NA	NA	NA	NA
WP_013894845.1\|3828401_3828617_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_083833264.1\|3828986_3829370_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_150111212.1\|3829466_3829829_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013894849.1\|3829964_3830459_+	hypothetical protein	A0A068CCD6	Rhizobium_phage	6.1e-25	60.0
WP_013894850.1\|3830455_3830674_+	hypothetical protein	NA	NA	NA	NA
WP_013894851.1\|3830673_3831036_+	hypothetical protein	NA	NA	NA	NA
WP_013894852.1\|3831032_3831377_+	hypothetical protein	NA	NA	NA	NA
WP_013894853.1\|3831376_3831598_+	hypothetical protein	NA	NA	NA	NA
WP_013894855.1\|3832937_3833396_+	hypothetical protein	NA	NA	NA	NA
WP_013894856.1\|3833392_3833875_+	GcrA cell cycle regulator	NA	NA	NA	NA
WP_013894857.1\|3833871_3834207_+	hypothetical protein	NA	NA	NA	NA
WP_150111278.1\|3834209_3835598_+	helicase	F4YCV3	Synechococcus_phage	2.9e-112	49.2
WP_013894859.1\|3835594_3835735_+	hypothetical protein	NA	NA	NA	NA
WP_150111279.1\|3835749_3836775_+	site-specific DNA-methyltransferase	A0A0F7L417	uncultured_marine_virus	2.9e-85	49.3
WP_013894861.1\|3836774_3837113_+	hypothetical protein	NA	NA	NA	NA
WP_013894862.1\|3837116_3837578_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	5.0e-29	46.1
WP_013894863.1\|3837582_3839496_+	phage/plasmid primase, P4 family	R9TSC7	Rhizobium_phage	5.8e-148	48.3
WP_049802375.1\|3839496_3839682_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.6e-05	50.0
WP_013894864.1\|3839678_3839963_-	hypothetical protein	NA	NA	NA	NA
WP_013894865.1\|3841883_3842897_+	hypothetical protein	NA	NA	NA	NA
WP_013894866.1\|3843161_3843782_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	8.5e-16	34.1
WP_013894868.1\|3843937_3845929_+\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	8.7e-171	47.5
WP_150111280.1\|3845955_3846147_+	hypothetical protein	K4HZB1	Acidithiobacillus_phage	5.4e-06	50.0
WP_013894870.1\|3846146_3847691_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.3e-110	47.1
WP_013894871.1\|3847680_3848589_+	S49 family peptidase	A0A2D1GMM6	Marinobacter_phage	6.0e-26	34.3
WP_013894872.1\|3848672_3849158_+	hypothetical protein	NA	NA	NA	NA
WP_013894873.1\|3849218_3849548_+\|head	head decoration protein	NA	NA	NA	NA
WP_041164184.1\|3849616_3850636_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	6.6e-58	39.9
WP_013894875.1\|3850640_3853487_+	methyltransferase domain-containing protein	K4JSB2	Caulobacter_phage	3.4e-19	32.7
WP_013894877.1\|3853698_3854352_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_013894878.1\|3854353_3854728_+	hypothetical protein	NA	NA	NA	NA
WP_013894879.1\|3854727_3855174_+	hypothetical protein	NA	NA	NA	NA
WP_013894880.1\|3855297_3855825_+	hypothetical protein	NA	NA	NA	NA
WP_013894881.1\|3855821_3856310_+	hypothetical protein	NA	NA	NA	NA
WP_013894882.1\|3856309_3856453_+	hypothetical protein	NA	NA	NA	NA
WP_013894883.1\|3856449_3857058_+	hypothetical protein	NA	NA	NA	NA
WP_013894884.1\|3857069_3857399_-	hypothetical protein	NA	NA	NA	NA
WP_013894885.1\|3857463_3860565_+\|tail	tail tape measure protein TP901 core region	A0A2I5ARC1	Synechococcus_phage	9.8e-12	37.0

DBSCAN-SWA_2

4092911 : 4101117

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013895100.1\|4092911_4093712_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-33	33.5
WP_013895101.1\|4093708_4094473_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.3e-37	46.8
WP_013895102.1\|4094653_4094875_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
WP_013895103.1\|4094905_4095634_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_013895104.1\|4095630_4096506_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.3e-50	46.7
WP_013895105.1\|4096608_4097913_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	57.2
WP_013895106.1\|4097912_4098671_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_013895107.1\|4098667_4099327_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.2e-17	39.1
WP_041164198.1\|4099584_4101117_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	1.6e-10	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015675

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection