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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014815 Micromonospora sp. L5, complete sequence 5 crisprs csa3,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas4 1 3 2 0

Results visualization

1. NC_014815
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014815_1 1934261-1934349 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014815_2 2532757-2532853 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014815_3 2694838-2695019 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014815_4 3870692-3870769 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014815_5 6959337-6959430 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_014815_3 3.1|2694882|22|NC_014815|PILER-CR 2694882-2694903 22 NC_014815.1 542884-542905 2 0.909

1. spacer 3.1|2694882|22|NC_014815|PILER-CR matches to position: 542884-542905, mismatch: 2, identity: 0.909

cgccgtcgtcgcccgcatgccg	CRISPR spacer
cgccatcgtcgcccgcttgccg	Protospacer
****.*********** *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014815_3 3.1|2694882|22|NC_014815|PILER-CR 2694882-2694903 22 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 877991-878012 2 0.909
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 956299-956329 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 718996-719026 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1772954-1772984 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1381581-1381611 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 387179-387209 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 361539-361569 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1672522-1672552 6 0.806
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NC_014310 Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence 1552963-1552993 7 0.774
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP022760 Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence 1463431-1463461 7 0.774
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP022789 Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence 1463422-1463452 7 0.774
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NC_009468 Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence 108613-108643 7 0.774
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NC_009468 Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence 140150-140180 7 0.774
NC_014815_4 4.1|3870716|30|NC_014815|CRISPRCasFinder 3870716-3870745 30 NZ_CP015738 Shinella sp. HZN7 plasmid pShin-02, complete sequence 40837-40866 7 0.767
NC_014815_4 4.1|3870716|30|NC_014815|CRISPRCasFinder 3870716-3870745 30 NZ_CP010325 Pantoea sp. PSNIH1 plasmid pPSP-057, complete sequence 63558-63587 7 0.767
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP022994 Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence 35425-35455 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 527017-527047 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP038640 Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence 81616-81646 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 CP000618 Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence 169702-169732 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 CP000619 Burkholderia vietnamiensis G4 plasmid pBVIE03, complete sequence 158230-158260 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NC_007337 Cupriavidus pinatubonensis JMP134 plasmid 1, complete sequence 15618-15648 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP026110 Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence 6349-6379 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP026110 Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence 26714-26744 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP040097 Pantoea sp. SO10 plasmid unnamed2, complete sequence 1084-1114 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 CP000620 Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence 26807-26837 8 0.742
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 201177-201207 8 0.742
NC_014815_4 4.1|3870716|30|NC_014815|CRISPRCasFinder 3870716-3870745 30 NZ_CP010410 Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence 235162-235191 8 0.733
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP016453 Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence 874555-874585 9 0.71
NC_014815_3 3.2|2694948|31|NC_014815|PILER-CR 2694948-2694978 31 NZ_CP011274 Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence 69892-69922 10 0.677

1. spacer 3.1|2694882|22|NC_014815|PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 2, identity: 0.909

cgccgtcgtcgcccgcatgccg	CRISPR spacer
ggccgtcgtcgcccgcaagccg	Protospacer
 **************** ****

2. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc-gcaggttc	CRISPR spacer
gatcggctggccctgcggcgtgctgccggcc-	Protospacer
*************  ******** ** **.. 

3. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc---gcaggttc	CRISPR spacer
gatcggctggcgctccggcgtgccgaacagg---	Protospacer
*********** * *********   .****   

4. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc-gcaggttc	CRISPR spacer
gatcggctggccctgcggcgtgctgccggcc-	Protospacer
*************  ******** ** **.. 

5. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc-gcaggttc	CRISPR spacer
gatcggctggccctgcggcgtgctgccggcc-	Protospacer
*************  ******** ** **.. 

6. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc---gcaggttc	CRISPR spacer
gatcggctggcgctccggcgtgccgaacagg---	Protospacer
*********** * *********   .****   

7. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc-gcaggttc	CRISPR spacer
gatcggctggccctgcggcgtgctgccggcc-	Protospacer
*************  ******** ** **.. 

8. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggctggcccgccggcgtgc-gcaggttc	CRISPR spacer
gatcggctggccctgcggcgtgctgccggcc-	Protospacer
*************  ******** ** **.. 

9. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gatcggctcgcccgcaggcgtgcgcaacgca	Protospacer
******** ****** **********.  . 

10. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gatcggctcgcccgcaggcgtgcgcaacgca	Protospacer
******** ****** **********.  . 

11. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gatcggctcgcccgcaggcgtgcgcaacgca	Protospacer
******** ****** **********.  . 

12. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
catcggcttgcccgccggcttgcgcctgtgg	Protospacer
 ******* ********** *****  **  

13. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
catcggcttgcccgccggcttgcgcctgtgg	Protospacer
 ******* ********** *****  **  

14. spacer 4.1|3870716|30|NC_014815|CRISPRCasFinder matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 7, identity: 0.767

cccgggaatgtgggcgcggccggtgccgtg	CRISPR spacer
ccgctcgatgtggccgcggccggtgccgtc	Protospacer
**    .****** *************** 

15. spacer 4.1|3870716|30|NC_014815|CRISPRCasFinder matches to NZ_CP010325 (Pantoea sp. PSNIH1 plasmid pPSP-057, complete sequence) position: , mismatch: 7, identity: 0.767

cccgggaatgtgggcgcggccggtgccgtg	CRISPR spacer
cccggtaatgtgggcgcggcctatggtttt	Protospacer
***** *************** .** . * 

16. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP022994 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

17. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgc----aggttc	CRISPR spacer
cttcggctgcaccgccggcgtgcgctacgag----	Protospacer
  *******  **************    **    

18. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP038640 (Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

19. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to CP000618 (Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

20. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to CP000619 (Burkholderia vietnamiensis G4 plasmid pBVIE03, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

21. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NC_007337 (Cupriavidus pinatubonensis JMP134 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

22. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP026110 (Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

23. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP026110 (Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

24. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP040097 (Pantoea sp. SO10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

25. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to CP000620 (Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
gggaaaccggcgcgccggcgtgcgccggttc	Protospacer
*.  ..*.*** ************* *****

26. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggctggcccgccggcgtgcgc----aggttc	CRISPR spacer
cttcggctgcaccgccggcgtgcgctacgag----	Protospacer
  *******  **************    **    

27. spacer 4.1|3870716|30|NC_014815|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

cccgggaatgtgggcgcggccggtgccgtg	CRISPR spacer
cggcacgatgcggccgcggccggtgccgtg	Protospacer
*   . .***.** ****************

28. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.71

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
cgcctgctcgcccgccggtgtgcgcaggcca	Protospacer
 ..* *** *********.*********.. 

29. spacer 3.2|2694948|31|NC_014815|PILER-CR matches to NZ_CP011274 (Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence) position: , mismatch: 10, identity: 0.677

gatcggctggcccgccggcgtgcgcaggttc	CRISPR spacer
cgccggctggccccccggcgtgagcaccacg	Protospacer
 ..********** ******** ***   . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 634098 : 681834 47 Vibrio_phage(16.67%) holin,transposase,integrase,protease attL 650810:650827|attR 657760:657777
DBSCAN-SWA_2 4535728 : 4590162 41 Gordonia_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage