CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029003	Actinobacillus pleuropneumoniae serovar 1 str. 4074 chromosome, complete genome	1 crisprs	cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3,DEDDh,DinG,cas3	0	11	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029003_1

238634-239441

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAG	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAG	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAG	PILER-CR

13 spacers

cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f

The CRISPR arrays of NZ_CP029003_1

>merge|NZ_CP029003|1|238634-239441|CRISPRCasFinder,CRT,PILER-CR
ATTTGTGGCTGCCTATACGGCAGTGAAGGGGATCTTTAACGTATTTTGCGATATTGGCAATTTCTAAGCTGCCTATACGGCAGTGAAGAGTGGCAAAACTAAGGAAGAGGTTATCGGATATTTCTAAGCTGCCTATACGGCAGTGAAGATTGTCAAGGTTTGGCGTAGCCAACCCGTAAGTTTCTAAGCTGCCTATACGGCAGTGAAGGGATAGATGGCGCTAATTATTTACTGCTTGGATTTCTAAGCTGCCTATACGGCAGTGAAGCGCTTTCCGCCACCTGATTTAGCAACAAACCGTTTCTAAGCTGCCTATACGGCAGTGAAGTGCAAGATATTGTAGAGCGATTGATTTATTGTTTTCTAAGCTGCCTATACGGCAGTGAAGGCAAAGGAGAAGGGGATAAAGAAGACGCTAACTTTCTAAGCTACCTATACGGCAGTGAAGCCTTACAAAATGTATTTTCTGCCCCTTTAAATTTTCTAAGCTGCCTATACGGCAGTGAAGTTATTTCTTTAAGAGTCATTTTATCAGCATAATTTCTAAGCTGCCTATACGGCAGTGAAGCTAAAGCAGGCATACAATTTGCAAGGGAACAGTTTCTAAGCTGCCTATACGGCAGTGAAGATGAACGATGGTTTTGATGTATTTTATCGCTATTTCTAAGCTGCCTATACGGCAGTGAAGTGCAAACGCTTGAGCAATCCGCCAAGGCACAATTTCTAAGCTGCCTATACGGCAGTGAAGTTTACCACCCTCAAAAACAACTAAAGCACCTGTTTCTAAGCTGCCTATACGGCAGTGAAG

>NZ_CP029003|1|1|238634-239441|CRISPRCasFinder
ATTTGTGGCTGCCTATACGGCAGTGAAG	GGGATCTTTAACGTATTTTGCGATATTGGCAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	AGTGGCAAAACTAAGGAAGAGGTTATCGGATA
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATTGTCAAGGTTTGGCGTAGCCAACCCGTAAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGATAGATGGCGCTAATTATTTACTGCTTGGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTTCCGCCACCTGATTTAGCAACAAACCG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAGATATTGTAGAGCGATTGATTTATTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GCAAAGGAGAAGGGGATAAAGAAGACGCTAAC
TTTCTAAGCTACCTATACGGCAGTGAAG	CCTTACAAAATGTATTTTCTGCCCCTTTAAAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTATTTCTTTAAGAGTCATTTTATCAGCATAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAGCAGGCATACAATTTGCAAGGGAACAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATGAACGATGGTTTTGATGTATTTTATCGCTA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAACGCTTGAGCAATCCGCCAAGGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTTACCACCCTCAAAAACAACTAAAGCACCTG
TTTCTAAGCTGCCTATACGGCAGTGAAG

>NZ_CP029003|1|1|238634-239441|CRT
ATTTGTGGCTGCCTATACGGCAGTGAAG	GGGATCTTTAACGTATTTTGCGATATTGGCAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	AGTGGCAAAACTAAGGAAGAGGTTATCGGATA
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATTGTCAAGGTTTGGCGTAGCCAACCCGTAAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGATAGATGGCGCTAATTATTTACTGCTTGGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTTCCGCCACCTGATTTAGCAACAAACCG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAGATATTGTAGAGCGATTGATTTATTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GCAAAGGAGAAGGGGATAAAGAAGACGCTAAC
TTTCTAAGCTACCTATACGGCAGTGAAG	CCTTACAAAATGTATTTTCTGCCCCTTTAAAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTATTTCTTTAAGAGTCATTTTATCAGCATAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAGCAGGCATACAATTTGCAAGGGAACAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATGAACGATGGTTTTGATGTATTTTATCGCTA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAACGCTTGAGCAATCCGCCAAGGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTTACCACCCTCAAAAACAACTAAAGCACCTG
TTTCTAAGCTGCCTATACGGCAGTGAAG

>NZ_CP029003|1|1|238694-239441|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAG	AGTGGCAAAACTAAGGAAGAGGTTATCGGATA
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATTGTCAAGGTTTGGCGTAGCCAACCCGTAAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGATAGATGGCGCTAATTATTTACTGCTTGGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTTCCGCCACCTGATTTAGCAACAAACCG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAGATATTGTAGAGCGATTGATTTATTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GCAAAGGAGAAGGGGATAAAGAAGACGCTAAC
TTTCTAAGCTACCTATACGGCAGTGAAG	CCTTACAAAATGTATTTTCTGCCCCTTTAAAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTATTTCTTTAAGAGTCATTTTATCAGCATAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAGCAGGCATACAATTTGCAAGGGAACAG
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATGAACGATGGTTTTGATGTATTTTATCGCTA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGCAAACGCTTGAGCAATCCGCCAAGGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TTTACCACCCTCAAAAACAACTAAAGCACCTG
TTTCTAAGCTGCCTATACGGCAGTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029003.1\|WP_005595983.1\|225199_225673_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
NZ_CP029003.1\|WP_005596014.1\|240154_241150_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP029003.1\|WP_005596007.1\|234296_237644_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP029003.1\|WP_005595991.1\|228502_230356_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP029003.1\|WP_005596020.1\|243863_245795_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP029003.1\|WP_005596010.1\|237640_238597_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP029003.1\|WP_005595985.1\|225681_226308_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|236665
NZ_CP029003.1\|WP_108744147.1\|230400_231734_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP029003.1\|WP_108744148.1\|245852_247186_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP029003.1\|WP_005596003.1\|231822_233088_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP029003.1\|WP_005596012.1\|239582_240152_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP029003.1\|WP_005596005.1\|233318_234206_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|167337
NZ_CP029003.1\|WP_080515067.1\|249274_249817_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP029003.1\|WP_005596015.1\|241151_242111_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP029003.1\|WP_005596031.1\|247357_248032_+\|CsgG/HfaB-family-protein	unknown	unknown	gnl\|CDD\|224379
NZ_CP029003.1\|WP_005596018.1\|242107_243457_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP029003.1\|WP_011848337.1\|248041_248389_+\|DUF4810-domain-containing-protein	unknown	unknown	gnl\|CDD\|379760
NZ_CP029003.1\|WP_005595987.1\|226366_227404_-\|rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236779
NZ_CP029003.1\|WP_005596036.1\|248400_249060_+\|DUF799-domain-containing-protein	unknown	unknown	gnl\|CDD\|368539
NZ_CP029003.1\|WP_005595989.1\|227569_228382_+\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753

Protein	Function_ID	Function_description	E-value
NZ_CP029003.1\|WP_005595983.1\|225199_225673_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	2.26301e-51
NZ_CP029003.1\|WP_005596014.1\|240154_241150_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP029003.1\|WP_005596007.1\|234296_237644_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP029003.1\|WP_005595991.1\|228502_230356_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP029003.1\|WP_005596020.1\|243863_245795_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP029003.1\|WP_005596010.1\|237640_238597_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.72712e-179
NZ_CP029003.1\|WP_005595985.1\|225681_226308_+\|LysE-family-transporter	gnl\|CDD\|236665	PRK10229, PRK10229, threonine efflux system; Provisional.	3.35261e-35
NZ_CP029003.1\|WP_108744147.1\|230400_231734_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.06955e-48
NZ_CP029003.1\|WP_108744148.1\|245852_247186_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.15271e-45
NZ_CP029003.1\|WP_005596003.1\|231822_233088_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP029003.1\|WP_005596012.1\|239582_240152_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	7.94638e-63
NZ_CP029003.1\|WP_005596005.1\|233318_234206_-\|NAD(+)-kinase	gnl\|CDD\|167337	PRK02231, ppnK, NAD(+) kinase.	0
NZ_CP029003.1\|WP_080515067.1\|249274_249817_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.39801e-94
NZ_CP029003.1\|WP_005596015.1\|241151_242111_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.29659e-137
NZ_CP029003.1\|WP_005596031.1\|247357_248032_+\|CsgG/HfaB-family-protein	gnl\|CDD\|224379	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane].	2.87652e-67
NZ_CP029003.1\|WP_005596018.1\|242107_243457_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.29357e-154
NZ_CP029003.1\|WP_011848337.1\|248041_248389_+\|DUF4810-domain-containing-protein	gnl\|CDD\|379760	pfam16068, DUF4810, Domain of unknown function (DUF4810). This family of proteins is found in bacteria. Proteins in this family are typically between 117 and 134 amino acids in length. There is a conserved PES sequence motif. It is a putative lipoprotein.	8.48828e-33
NZ_CP029003.1\|WP_005595987.1\|226366_227404_-\|rRNA-methyltransferase	gnl\|CDD\|236779	PRK10864, PRK10864, putative methyltransferase; Provisional.	7.56548e-77
NZ_CP029003.1\|WP_005596036.1\|248400_249060_+\|DUF799-domain-containing-protein	gnl\|CDD\|368539	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.	7.57253e-102
NZ_CP029003.1\|WP_005595989.1\|227569_228382_+\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	6.75423e-148

>NZ_CP029003.1|WP_005596010.1|237640_238597_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MKKTPYIPSSDLKTILHSKRANIYYLEHCRILLNGGRVEYVTDKGNESLYWNIPIANTICLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCDFFSPQSEYRPVEYLQQWCRFWFDDNKRLNSAKTLQLARLQLLLRTWNKFDWEYAQDKLTALVQHYQEEFTNVKDSQSLLAAEGRLTAKLYALANQATLNDESFKRESGKEGANQFLDHGNYLAYGLGATACWVLGLPHGLAILHGKTRRGGLVFDAADIIKDAIILPQAFISAQNGDNEKQFRQACINNLVRFEALDIIINTLKQLASEGANI
>NZ_CP029003.1|WP_005596007.1|234296_237644_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKNALTETRRILDQFAERCGDRCWQTAITQAGLETLHNMLRQTARKNTAVACYWTHGKNLTELLWIVGDKSQFNAEGRVPTNRTQRNILRADDENGWLSAYSIQILTAIAALLHDIGKANIAFQQKLKPKAKFFPDCYRHEWISTRLFEAMIAGCDTDEQWLARLANWQNYIEENPDWLLNLTLIADKSDHPHNFSHFPPLAKVVLWLILSHHKLPFTQKTLDCHSDQERILREHFMLKTAVEPFYRFLAPVEHWVMNQSEHPQPENFWQFKTLVMESKAWQKAMQRWANKALNHAPLRELSQLNKTINDPFLLILSRLCLIVGDHNYSSAPADRQLGDLNFFEKLIANTDKKTKQPKQALDEHLLGVCKTSAKFARLLPKLAKELPHIQQHRPFTKRTNLDRFKWQNRAFELARSVQSESEQAGFFGVNMASTGCGKTLANAKIMYGLSNQDGARFTIALGLRVLTLQTGLALRQKLMLSSEQLAVLVGGSATKQLFELQNESAQSGSESVQEWFEGNEVYGMNFLESGIAEEEFGTLLADNKAKKLLYAPIVSCTLDHMIQATETIRGGKHIVPLLRLLTSDLVLDEPDDFSQSDLPALSRLVHLAGMFGSKVLLSSATLTPDLISGLFNAYQAGRKIYNRHQGINPELPICCAWIDEYKQQQQKCPTVKEFEQYHAQFTSSRAEKLMQSPIRHKAEIIQLPPFSSVENQDINYTMLADSLIEQAITLHQRYAQQDPISKKFVSMGLIRFANIKPMIPLVETLFKTPLNTQFSDYKIHLCCYHSRQLLLLRSKLEEKLDRILNRSEPEALFSQPEIMSALTQDKAVHHIFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRPEKIATQANILLLPTNWRGLQTKNNGSEPIFCRPGFEDQSNKLTSHKTVDLIKQEHLASITAIPRIIKPLVLQAETNLADLEHKVIGDLLNNKGINRVNAYWQDNLTNRLNANLPLITSFRKNEGKWQTEVVCLPSEESHWEFMFKSSEKAWEDPYFENDYLAEISYQKLNCESPWITPWLTTPLNQALSELCEQLDEADQTQAALRFATVSLQHYGKTLPIWKFNETLGFWQP
>NZ_CP029003.1|WP_005596005.1|233318_234206_-|NAD(+)-kinase
MKPEERFFECIAIVGKPRHEIALETHLAVYNWLKDRHYRVLVEKSIAQQLNLPEARSLEEIGQQTNLVIVIGGDGNMLGMARRLAEYQVPLIGINRGNLGFLTDIAPHSTFEQLHNCIERGEFVIEERFLLEARIERNGKIIATNNALNEVVIHPTQVARIIEFEVYIDGKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNMNAIALVPMHPHTLSSRPLVIDGDSQISLRFAQYNQPSLEVSCDGQYDLPFTPEDRIIVEKSPNKLRLLHLKDYNYFTVLGSKLGWSSKLF
>NZ_CP029003.1|WP_005596003.1|231822_233088_-|serine-hydroxymethyltransferase
MFTANMNIQDYDPILWQAIENENRRQEEHIELIASENYASPRVMQAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKQLFGADYVNVQPHSGSQANAAVYGALIQPNDTILGMDLAHGGHLTHGAKVSFSGKIYNSVLYGITAEGLIDYEDVRQKALECKPKMIVAGFSAYSQIVDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPSPLPYAHVVTTTTHKTLGGPRGGLILSACGDEEIYKKLQSSVFPANQGGPLVHIIAAKAVCFKEALEPEYKIYQQNVVKNAKAMVEVFKQRGYEVISNGTENHLFLVSFVKQGLTGKAADAALGQANITVNKNSVPNDPQKPFITSGIRIGTPAVTRRGFKEADVQALAGWMCDVLDSIGKDNHEQVIAETKAKVLDICARLPVYAK
>NZ_CP029003.1|WP_108744147.1|230400_231734_-|IS3-family-transposase
MTKYNSLFKQQVIEFYLQNDKNRLFTQRHFQLSKKTLTRWIAQFNHNGINGLAVIGKKQKYSPEFKLTVIQAVKKGQFSAESASLHFGIANSGSISQWLHIFEEQGINGLLPKPKGRPTMKPKYPKMPPPPKTEEERLRYRILELEAEVAYPKKVAGVQPTKNAAKAAIVKTLRVDFPLEILLPLTGLKRSTFFYHLPPKIDKNAVIRQKVIEIYQDNDGNYGYRRITLKLRDFLGAINHKRIQRIMQQLDLKGKCKQRKYRSYQGEVGKIAENVLQRDFHATAPNEKLVTDITEFKCAEGKLYLSPIKDLFNSEILAYDLARSPNFEQVMRMLKQAVAKLPKDAKPILHSDQGWQYRMAGYQEMLRKHHIKQSMSRKANCLDNGAMESFFGRLKTECYFGKRFETFEQLEKVIHEYIHYYNNERIQVKLKGLSPVQYRTQSLN
>NZ_CP029003.1|WP_005595991.1|228502_230356_+|1-deoxy-D-xylulose-5-phosphate-synthase
MQNKYPLLSQINSPEDLRLLAKEQLQSVADELRAYLLESVSQTSGHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKNGIHPFPWREESLYDVLSVGHSSTSISAGVGIAVAAEKENAGRKTVCVIGDGAITAGMAFEAMNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSIYTTVRDGSKKVLDKVPTIKNFMKKSEEHMKGVISPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQFLHIRTKKGKGYEPAENDPIGYHGVPKFDPTCGQLPKSKTIPTYSDIFGNWLCEMAEQDSKLIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSSFLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDVSFMRCIPNMTIMCPSDENEMRQMLYTAYRMNTPTAVRYPRGNAQGVALAPMQALEVGKGKLIQQGQKVAILNFGPLLNEARIVAEKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIGKIRPLVMLGIPDFFVPQATQAESYADLGLDAAGIEQRIQAVVNQ
>NZ_CP029003.1|WP_005595989.1|227569_228382_+|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNIIAKGYEQAASEIEVAQKGTNDYVTAIDKAAEAAIIEVIRKSYPDHAIVGEESGILAGENENVQWVIDPLDGTTNFVKRLPHFAVSIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRVETERRDLNGTVLATGFPFKAAKHRPAHLNMLEGLMNNGVADFRRTGSAALDLAYVAANRVDGYFEIGLKPWDCAAGDLIVREAGAIVTNFVGGTDYLKSGNVVAGQARVVKEILNAIQPTLTEDLKN
>NZ_CP029003.1|WP_005595987.1|226366_227404_-|rRNA-methyltransferase
MKPKFNENKPRFQTVEERRDNKFQTKSNRFEDKPRFDKPKFGGDKACFDRKDHQEAREAIYPTIGKKAAGEGNVQISVKGGNNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVLSEIPAQDIEYPEDTTVQLSFENPLNSGLNVAVSTGILLNQWYQANII
>NZ_CP029003.1|WP_005595985.1|225681_226308_+|LysE-family-transporter
MLTILLVHLAGLASPGPDFFYVVRQSASHSTKAGILAAIGISLGIIFWASFAIFGLAWLSNTIGTVFQFLIMVIGGIYLSYIGSLMVRVTKNATFTNEPTNLRVLDNVTEIKKGLLINIFNAKAGVYFTSVVSAFLAQFTQTSDLFLLLFLFVFSTLIYFILVALLFSRRPIQEFYTKYSRYIDNVAGVIFILFGMILIFDGIKGLIS
>NZ_CP029003.1|WP_005595983.1|225199_225673_+|phosphatidylglycerophosphatase-A
MKNFNLKNPIHLFACGFGSGLLKPAPGTWGSLAGVLIAVLLWNLTESSLFFIGLTLVSFIAGCHICEKTSRDLNVHDDGRIVWDEIVAIFLMFAFLPEYNGLAYTLTFICFRFFDVLKPYPIRYFDEKLETGLGIMFDDILAAIYALIALHFIYWLI
>NZ_CP029003.1|WP_005596012.1|239582_240152_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MSELTHYIELKAIPQVDILQTDVIAHGLQILHKFLPLYQGEIGLSFPAYGLGRTLGGIIRVFGNEQHCAQIKVQLTAEGLQDYALITSVTPIPEEIAEHRRYQRVHRKGQSAIRRTEKFLVQQGKWTEEIRQEMLIHQQNQKVFPYVKLKSGSTKQHFVLAIRQLRLAEPVSGLFNAYGLSKIATVPHF
>NZ_CP029003.1|WP_005596014.1|240154_241150_-|type-I-F-CRISPR-associated-protein-Csy3
MTKLTTASVLAFERKLDISDATFTQKNSMSDAPEIAVTIREKSVRGTISNRLKNALANDPAKLDAEIEKANLQRVDVATLNDDYDTLVARFTCKVLPFEGKPNVCNDPEYQAKLLSTIQNYLTAHGMSELAKRYATNLANARWLWRNRISAETIQVSIKVADDVIVFENAKQLPLNSFEQADEKLQKIASYIEKGLKGEEFIILEVEAQAKMGRGQEVYPSQELVLDTGTRKSKILYEINHKAGMHSQKIGNAIRTIDTWYAENAPFPIAVEPYGAVTNLGTAFRQPKEKIDFYTLFDNWVLKDVAPELEQQHYVISVLIRGGVFGASGKE
>NZ_CP029003.1|WP_005596015.1|241151_242111_-|type-I-F-CRISPR-associated-protein-Csy2
MNYPNFYLLFDHVEIQAANTISSPITYGFPALTGFTGAIHALSRKLFSQQVELGGVMIACHDYQILGYKHSDFSDLTFNQTRNPLKKNGDSPSIIEEGKIHLDISLVVEMEVKDPEFYYALNSQDSEQKTQFLEHCKKLLMQQRIAGGSVFQIENVELFNLSEESEIKLALMPAFVLMDAKQILTDITQSLQNGISNNEIMIYPATPNANALDALLEVATLHHIPLSEHATSQEWETFNVNQGKGWLVPIPVGYQAISPLFTAGEMQNCRTTEYPSQYVETVYSLGKWVFPFSLPDDLSQCFWHYNTPQDNLYLITQGA
>NZ_CP029003.1|WP_005596018.1|242107_243457_-|type-I-F-CRISPR-associated-protein-Csy1
MITPLQIRAKIIDFLQAQHLKKSENDYKKLEKATEPEEIAKIKAEISKSEEKYRLDTWLHTAATEMAKQLKFGTHIAKGIHPDAKGNNINFRANLNLPATLVGSQLIDKLVLDANGNAAALPLAAFFDIMVDEVHKRTLKDLLLTDEPCLDGCFSDDHSLSVQYKIAFQMALKGNLNSPETHERNKQVLWVNSSSAIEDNHYTCLIPLYPSSFTHAIYNKLNQARFSEENKQARENRYKNKAQNPYISIPHLAATKLGGTKPQNVSLLTSKQGGRNYLLPSLPPIFTKGELRLTNAQDTIFNDRLAYVCRAGLYQLYQAVADSRKNYIVRVPRAEAVNLIVQMVLQQAYKLQKRTAGWSRDYQLAWCEKYWLDPQRAKLNGEEQFHSALTQQDWISEVEQRFAAWLNALLKKRFPKHQDDFTATEYNEWRKYFRKKLHRQLRCLYKEVL
>NZ_CP029003.1|WP_005596020.1|243863_245795_+|threonine--tRNA-ligase
MPIITLPDGSQRQFDNPVSVMEVAQSIGAGLAKATIAGRVNGERRDACDIISEDSSLEIITAKDEDGLEIIRHSCAHLLGHAIKQLFPDVKMAIGPTIDNGFYYDVDLDRSLTQEDLDAIEKRMLELAKTNYDVVKKRVSWQEARDTFEKRGEPYKMAILDENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRIYGTAWADKKQLAEYLTRLEEAAKRDHRRIGKALDLYHMQEEAPGLVFWHNDGWTIFRELETFVRTKLKEYDYQEVKGPFMMDRVLWERTGHWQNYADLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYGPKIEFALRDCLDREWQCGTIQLDFALPGRLDASYVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQKVTKALSDAGIRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTRKGADLGTFTIDEFVEILKNQVKARGLKLLGEE
>NZ_CP029003.1|WP_108744148.1|245852_247186_-|IS3-family-transposase
MTKYNSLFKQQVIEFYLQNDKNRLFTQRHFQLSKKTLTRWIAQFNHNGINGLAVIGKKQKYSPEFKLTVIQAVKKGQFSAESASLHFGIANSGSISQWLHIFEEQGINGLLPKPKGRPTMKPKYPKMPPPPKTEEERLRYRILELEAEVAYPKKVAGVQPTKNAAKAAIVKTLRVDFPLEILLPLTGLKRSTLFYHLPPKIDKNAVIRQKVIEIYQDNDGNYSYRRITLKLRDFLGAINHKRIQRIMQQLDLKGKCKQRKYRSYQGEVGKIAENVLQRDFHATAPNEKLVTDITEFKCAEGKLYLSPIKDLFNSEILAYDLARSPNFEQVMRMLKQAVAKLPKGAKPILHSDQGWQYQMADYQDMLRKHHIKQSMSRKANCLDNGAMESFFGRLKTECYFGKRFETFEQLEKVIHEYIHYYNNERIQVKLKGLSPVQYRTQSLN
>NZ_CP029003.1|WP_005596031.1|247357_248032_+|CsgG/HfaB-family-protein
MKKLLMTTLCVTALGLAGCATEGSRAIAPTVTQAASTATNYHGVKSAISVGKFDNKSSFQNGVFSDGQDQLGNQSKTILVSHLQQTGRFSVLDRTNMSEAAAEAKIKGQKQNLKGATYVITGDVTEFGRKTVGDHQLFGILGRGKEQVAYAKVTLNVVNVNTSEVVYSVQGAGEYNLSNREVLGFGGTAGYDSTLNGKVLDLAIREAVNNLVNGIEAGHWTPAK
>NZ_CP029003.1|WP_011848337.1|248041_248389_+|DUF4810-domain-containing-protein
MKKINIIMFALITVVLSACSSRSVDTNTYYWGNYSDLIYSYYNEPGDFTKQENGFNEIIKMAKDAQKPVAPGVYGHLGLVLLKQGKTAEAQNAFLQEQQLFPESKTFMQYLQRKK
>NZ_CP029003.1|WP_005596036.1|248400_249060_+|DUF799-domain-containing-protein
MKKLLILLSGILFLSGCAQQQKPSYDYSALKESKPKSILVLLPVNNSVDVKADTSVLARVTYPLAELGYYVYPVALVDEVFKQNGLTDGNAIRSANIKKIYDIFGADSILYLNVDKYGTSYKVFDSVTEVELEGKLIDLKTGKTLWDGTGRFAEGSTHSNDGALVALVKAAVSQVVDTTKDKGYEVSASAMSSLVHVGKNGGLLVGPRHSLYGKEDVKK
>NZ_CP029003.1|WP_080515067.1|249274_249817_+|translation-initiation-factor-IF-3
MKPVKRVQTNRAHRLNDEIRGVKEVRLTDENGEQVGIVSIQDALARAEDAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPGTDEGDYQIKLRSILRFLEDGDKVKITVRFRGREMAHQDIGLDVLDRVKTDTAEVAVVESAPGKLEGRQAVMVIAPKKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	31-62	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	24839-24870	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	26936-26967	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	5611-5642	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	9113-9144	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	6970-7001	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	4641-4672	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	8581-8612	2	0.938
NZ_CP029003_1	1.10\|239202\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239202-239233	32	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	22740-22771	2	0.938
NZ_CP029003_1	1.10\|239202\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239202-239233	32	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	3524-3555	2	0.938
NZ_CP029003_1	1.10\|239202\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239202-239233	32	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	997-1028	2	0.938
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	3018-3049	3	0.906
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NZ_CP054197	Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence	22005-22036	3	0.906
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NZ_CP023060	Glaesserella sp. 15-184 plasmid unnamed3, complete sequence	115-146	6	0.812
NZ_CP029003_1	1.12\|239322\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239322-239353	32	NZ_CP047230	Moraxella osloensis strain YV1 plasmid p4, complete sequence	13339-13370	6	0.812
NZ_CP029003_1	1.2\|238722\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238722-238753	32	NC_048697	Pseudomonas phage Littlefix, complete genome	48817-48848	7	0.781
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	NZ_CP010126	Escherichia coli strain C8 plasmid A, complete genome	56628-56659	7	0.781
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	346605-346636	8	0.75
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	KY794643	Staphylococcus phage vB_Sau_S24, complete genome	112258-112289	8	0.75
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	291942-291973	8	0.75
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	294225-294256	8	0.75
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	294225-294256	8	0.75
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	247497-247528	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	254481-254512	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NC_042112	Campylobacter phage CP81, complete genome	54195-54226	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	MH107028	Campylobacter phage CP39, partial genome	7059-7090	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NC_015464	Campylobacter phage NCTC12673, complete genome	120547-120578	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	KF148616	Campylobacter phage CP8, complete genome	74108-74139	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NC_016562	Campylobacter phage CPX, complete genome	73875-73906	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	KX236333	Campylobacter phage PC14, complete genome	20504-20535	8	0.75
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	JX569801	Campylobacter phage CP30A, complete genome	121093-121124	8	0.75
NZ_CP029003_1	1.12\|239322\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239322-239353	32	JQ807249	Environmental Halophage eHP-30, partial genome	5349-5380	8	0.75
NZ_CP029003_1	1.13\|239382\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239382-239413	32	NC_009933	Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence	97172-97203	8	0.75
NZ_CP029003_1	1.5\|238902\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238902-238933	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1299266-1299297	9	0.719
NZ_CP029003_1	1.5\|238902\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238902-238933	32	NC_019204	Rahnella sp. WMR114 plasmid pHW114A, complete sequence	3286-3317	9	0.719
NZ_CP029003_1	1.6\|238962\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238962-238993	32	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	132361-132392	9	0.719
NZ_CP029003_1	1.6\|238962\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238962-238993	32	LC553734	Escherichia phage EK010 DNA, complete sequence	23627-23658	9	0.719
NZ_CP029003_1	1.8\|239082\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239082-239113	32	MN693621	Marine virus AFVG_250M1026, complete genome	18074-18105	9	0.719
NZ_CP029003_1	1.9\|239142\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239142-239173	32	AJ783769	Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome	73073-73104	9	0.719
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	93077-93108	9	0.719
NZ_CP029003_1	1.12\|239322\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239322-239353	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1076721-1076752	9	0.719
NZ_CP029003_1	1.12\|239322\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239322-239353	32	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	895568-895599	9	0.719
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694770	Marine virus AFVG_250M796, complete genome	8992-9023	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694102	Marine virus AFVG_250M795, complete genome	9166-9197	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694199	Marine virus AFVG_250M386, complete genome	9662-9693	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN693743	Marine virus AFVG_250M727, complete genome	33776-33807	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694287	Marine virus AFVG_250M724, complete genome	9011-9042	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694233	Marine virus AFVG_250M797, complete genome	8981-9012	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN693769	Marine virus AFVG_250M725, complete genome	9001-9032	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694519	Marine virus AFVG_250M726, complete genome	34414-34445	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN694624	Marine virus AFVG_250M250, complete genome	34505-34536	10	0.688
NZ_CP029003_1	1.7\|239022\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239022-239053	32	MN693702	Marine virus AFVG_250M251, complete genome	34481-34512	10	0.688
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	106292-106323	10	0.688
NZ_CP029003_1	1.11\|239262\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	239262-239293	32	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	198193-198224	10	0.688
NZ_CP029003_1	1.3\|238782\|32\|NZ_CP029003\|CRISPRCasFinder,CRT,PILER-CR	238782-238813	32	NC_004345	Histophilus somni plasmid p9L, complete sequence	1-26	11	0.656

1. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

2. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

3. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

4. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

5. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

6. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

7. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

8. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 2, identity: 0.938

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggagg	Protospacer
**************************** *.*

9. spacer 1.10|239202|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctaaagcaggcatacaatttgcaagggaacag	CRISPR spacer
caaaagcaggcataaaatttgcaagggaacag	Protospacer
* ************ *****************

10. spacer 1.10|239202|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 2, identity: 0.938

ctaaagcaggcatacaatttgcaagggaacag	CRISPR spacer
caaaagcaggcataaaatttgcaagggaacag	Protospacer
* ************ *****************

11. spacer 1.10|239202|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 2, identity: 0.938

ctaaagcaggcatacaatttgcaagggaacag	CRISPR spacer
caaaagcaggcataaaatttgcaagggaacag	Protospacer
* ************ *****************

12. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 3, identity: 0.906

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgtagccaacccggggg	Protospacer
**************************** ..*

13. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054197 (Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.906

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
attgtcaaggtttggcgaagccaacccgatag	Protospacer
***************** **********  **

14. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023060 (Glaesserella sp. 15-184 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
gcggtcaaggtttgccgtaggcaacccgtagg	Protospacer
.. *********** ***** *********.*

15. spacer 1.12|239322|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047230 (Moraxella osloensis strain YV1 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.812

tgcaaacgcttgagcaatccgccaaggcacaa	CRISPR spacer
tgcaaacgcttgagcaatccgccatgagcaag	Protospacer
************************ *.   *.

16. spacer 1.2|238722|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_048697 (Pseudomonas phage Littlefix, complete genome) position: , mismatch: 7, identity: 0.781

agtggcaaaactaaggaagaggttatcggata	CRISPR spacer
attggcaatactaaggaagaggttaaaccaga	Protospacer
* ****** ****************    * *

17. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010126 (Escherichia coli strain C8 plasmid A, complete genome) position: , mismatch: 7, identity: 0.781

ttatttctttaagagtcattttatcagcataa-	CRISPR spacer
atatatctttaagagtcattttatta-tgtgat	Protospacer
 *** *******************.* ..*.*

18. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 8, identity: 0.75

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ctgaagcagaagggtataaagaagactatatc	Protospacer
 ..*** ******* ***********  ** *

19. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to KY794643 (Staphylococcus phage vB_Sau_S24, complete genome) position: , mismatch: 8, identity: 0.75

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaagggtataaagaagagattacc	Protospacer
 .****.******* ********** ..** *

20. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.75

ttatttctttaagagtcattttatcagcataa	CRISPR spacer
gtatttcttcaagtgtcattttatcacctgtt	Protospacer
 ********.*** ************ *

21. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.75

ttatttctttaagagtcattttatcagcataa	CRISPR spacer
gtatttcttcaagtgtcattttatcacctgtt	Protospacer
 ********.*** ************ *

22. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.75

ttatttctttaagagtcattttatcagcataa	CRISPR spacer
gtatttcttcaagtgtcattttatcacctgtt	Protospacer
 ********.*** ************ *

23. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 8, identity: 0.75

ttatttctttaagagtcattttatcagcataa	CRISPR spacer
atattgctttaagactcattttatatacctca	Protospacer
 **** ******** *********  .* * *

24. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aatcacgatggttttcttgtattttatcagtt	Protospacer
*   ***********  ***********. *

25. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

26. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MH107028 (Campylobacter phage CP39, partial genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

27. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_015464 (Campylobacter phage NCTC12673, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

28. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

29. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

30. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to KX236333 (Campylobacter phage PC14, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatggaca	Protospacer
* . ** ************** ***** * .*

31. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to JX569801 (Campylobacter phage CP30A, complete genome) position: , mismatch: 8, identity: 0.75

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aaacactatggttttgatgtaatttatgggca	Protospacer
* . ** ************** ***** * .*

32. spacer 1.12|239322|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to JQ807249 (Environmental Halophage eHP-30, partial genome) position: , mismatch: 8, identity: 0.75

tgcaaacgcttgagcaatccgccaa----ggcacaa	CRISPR spacer
gccaaacgcttgagcaagcagccaaattcggc----	Protospacer
  *************** * *****    ***

33. spacer 1.13|239382|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_009933 (Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence) position: , mismatch: 8, identity: 0.75

tttaccaccctcaaaaacaactaaagcacctg---	CRISPR spacer
tttaccaccctcaacaaccacta---ttcctatga	Protospacer
************** *** ****   . ***.

34. spacer 1.5|238902|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.719

cgctttccgccacctgatttagcaacaaaccg	CRISPR spacer
ggctttccgcgacctgattcagcagatcgtcg	Protospacer
 ********* ********.****.   ..**

35. spacer 1.5|238902|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_019204 (Rahnella sp. WMR114 plasmid pHW114A, complete sequence) position: , mismatch: 9, identity: 0.719

cgctttccg------ccacctgatttagcaacaaaccg	CRISPR spacer
------ccaagcaacccacctgatttggcaacaatccg	Protospacer
      **.      ***********.******* ***

36. spacer 1.6|238962|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 9, identity: 0.719

tgcaagatattgtagagcgattgatttattgt	CRISPR spacer
aagtagatattatagagtgattgattttattt	Protospacer
 .  *******.*****.*********  * *

37. spacer 1.6|238962|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to LC553734 (Escherichia phage EK010 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

tgcaagatattgtagagcgattgatttattgt	CRISPR spacer
ttgtaaatattgtagagagaatgatttatcta	Protospacer
*   *.*********** ** ********.

38. spacer 1.8|239082|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN693621 (Marine virus AFVG_250M1026, complete genome) position: , mismatch: 9, identity: 0.719

ccttacaaaatgtattttctgcccctttaaat	CRISPR spacer
tttgtaaaaatgtattttcttcgcctttagct	Protospacer
..*   ************** * ******. *

39. spacer 1.9|239142|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to AJ783769 (Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome) position: , mismatch: 9, identity: 0.719

ttatttctttaagagtcattttatcagcataa	CRISPR spacer
ctatttctttatgtgtcattttataaattttt	Protospacer
.********** * ********** *.. *

40. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.719

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
ctcagacgtggttttgatgtattttgtccctg	Protospacer
 * *.  .*****************.** **.

41. spacer 1.12|239322|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 9, identity: 0.719

tgcaaacgcttgagcaatccgccaaggcacaa	CRISPR spacer
aaaaactgcttgaaaaatccgccaaggcacgc	Protospacer
 . ** .******. ***************.

42. spacer 1.12|239322|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.719

tgcaaacgcttgagcaatccgccaaggcacaa	CRISPR spacer
aaaaactgcttgaaaaatccgccaaggcacgc	Protospacer
 . ** .******. ***************.

43. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694770 (Marine virus AFVG_250M796, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

44. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694102 (Marine virus AFVG_250M795, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

45. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694199 (Marine virus AFVG_250M386, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
tgcaagaagaatgggataaagaagacaaagat	Protospacer
   ***.**** **************.  .*.

46. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN693743 (Marine virus AFVG_250M727, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

47. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694287 (Marine virus AFVG_250M724, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

48. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694233 (Marine virus AFVG_250M797, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

49. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN693769 (Marine virus AFVG_250M725, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

50. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694519 (Marine virus AFVG_250M726, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

51. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN694624 (Marine virus AFVG_250M250, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

52. spacer 1.7|239022|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to MN693702 (Marine virus AFVG_250M251, complete genome) position: , mismatch: 10, identity: 0.688

gcaaaggagaaggggataaagaagacgctaac	CRISPR spacer
ttaaagaagaatgggataaagaagatctagat	Protospacer
 .****.**** *************. . .*.

53. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 10, identity: 0.688

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aatcacgatggttttcttgtattttattttat	Protospacer
*   ***********  **********. .

54. spacer 1.11|239262|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 10, identity: 0.688

atgaacgatggttttgatgtattttatcgcta	CRISPR spacer
aatcacgatggttttcttgtattttattttat	Protospacer
*   ***********  **********. .

55. spacer 1.3|238782|32|NZ_CP029003|CRISPRCasFinder,CRT,PILER-CR matches to NC_004345 (Histophilus somni plasmid p9L, complete sequence) position: , mismatch: 11, identity: 0.656

attgtcaaggtttggcgtagccaacccgtaag	CRISPR spacer
gcggtcaaggtttgccgtaggcaacc------	Protospacer
.. *********** ***** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

450509 : 457060

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005596390.1\|450509_451595_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-47	35.8
WP_005596391.1\|451641_452289_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.1e-45	43.7
WP_005596392.1\|452349_453555_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.5e-96	46.7
WP_005596393.1\|453665_454127_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.9e-43	59.5
WP_005596395.1\|454215_454704_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_005596397.1\|454713_455649_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.7e-37	34.2
WP_005596399.1\|455776_457060_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.1e-30	32.9

DBSCAN-SWA_2

575841 : 614539

Mannheimia_phage(36.67%)

integrase,portal,protease,holin,tail,terminase

attL 575644:575675|attR 617696:617727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
575644:575675	attL	NA	NA	NA	NA
WP_043991764.1\|575841_576882_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LQJ3	Mannheimia_phage	4.0e-175	87.0
WP_005609876.1\|577139_577361_-	hypothetical protein	NA	NA	NA	NA
WP_005596624.1\|577505_578033_-	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	1.0e-62	69.7
WP_043991767.1\|578016_578805_-	DNA methyltransferase	U4KJA1	Streptococcus_phage	7.1e-84	61.6
WP_005596628.1\|578851_579085_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_005596630.1\|579397_580195_-	DUF2303 family protein	NA	NA	NA	NA
WP_005596631.1\|580240_580600_-	hypothetical protein	I6XKT1	Burkholderia_virus	3.8e-08	36.4
WP_005596633.1\|580662_580977_-	hypothetical protein	Q19US5	Mannheimia_phage	2.0e-05	35.9
WP_005596635.1\|580999_581296_-	hypothetical protein	NA	NA	NA	NA
WP_043991768.1\|581285_581555_-	hypothetical protein	NA	NA	NA	NA
WP_043991770.1\|581564_581783_-	hypothetical protein	NA	NA	NA	NA
WP_005596638.1\|583016_583244_-	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	2.9e-22	65.3
WP_005596639.1\|583508_583784_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	7.0e-47	94.5
WP_005596640.1\|583793_584084_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	1.8e-40	86.3
WP_005596643.1\|584451_585267_-	DNA adenine methylase	A0A1Z1LWI0	Synechococcus_phage	8.8e-13	25.1
WP_005596645.1\|585311_586922_-	ATP-binding protein	NA	NA	NA	NA
WP_005596647.1\|586989_587664_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.6e-42	44.7
WP_005596650.1\|587772_587988_+	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	2.1e-14	57.7
WP_043991773.1\|588046_588742_+	phage antirepressor KilAC domain-containing protein	A0A2I7RHG4	Vibrio_phage	6.5e-49	48.4
WP_005596652.1\|588771_589107_+	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-22	54.9
WP_005596653.1\|589189_589762_+	conserved phage C-terminal domain-containing protein	NA	NA	NA	NA
WP_005596654.1\|589764_590289_+	DNA methylase	A0A0M3LNW2	Mannheimia_phage	5.1e-30	42.3
WP_005596657.1\|590483_591506_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	4.0e-55	37.3
WP_005596658.1\|591577_591943_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	3.1e-26	49.6
WP_005596659.1\|591932_592292_+	hypothetical protein	NA	NA	NA	NA
WP_080550254.1\|592732_593077_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_005596661.1\|593180_593783_+	hypothetical protein	NA	NA	NA	NA
WP_005596662.1\|593848_594997_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	8.3e-33	28.5
WP_080550253.1\|595321_595996_+	KilA-N domain-containing protein	A0A0M3LR56	Mannheimia_phage	4.4e-18	44.7
WP_005596666.1\|596308_596662_-	hypothetical protein	NA	NA	NA	NA
WP_043991789.1\|596856_597207_+\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	1.2e-35	67.3
WP_192876862.1\|597196_597643_+	lysozyme	W6E9Q2	Rhizobium_phage	3.1e-36	59.4
WP_080550255.1\|597635_597998_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	2.5e-15	83.0
WP_005596669.1\|598455_598935_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.3e-43	57.0
WP_043991774.1\|598934_601052_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	5.1e-270	66.6
WP_043991775.1\|601048_601273_+	hypothetical protein	NA	NA	NA	NA
WP_043991776.1\|601272_602781_+\|portal	phage portal protein	S5MW34	Escherichia_phage	4.0e-160	58.5
WP_005596672.1\|602812_604771_+\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	2.8e-198	55.3
WP_005596673.1\|604844_605168_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	3.3e-11	41.7
WP_005596674.1\|605160_605463_+\|tail	phage tail protein	NA	NA	NA	NA
WP_005596676.1\|605465_605993_+\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	1.1e-08	30.6
WP_005596678.1\|605989_606406_+\|tail	phage tail protein	NA	NA	NA	NA
WP_005596679.1\|606405_606786_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_005596680.1\|606855_607134_+	hypothetical protein	NA	NA	NA	NA
WP_005596681.1\|607311_610794_+\|tail	phage tail tape measure protein	A0A125RN77	Pseudomonas_phage	2.0e-37	41.8
WP_005609921.1\|611605_612088_+	hypothetical protein	A0A0N7MKP8	Acinetobacter_phage	1.1e-18	29.1
WP_125121632.1\|612087_612495_+	hypothetical protein	NA	NA	NA	NA
WP_005596685.1\|612496_614539_+	hypothetical protein	A0A0P1KL86	Acinetobacter_phage	6.2e-63	28.1
617696:617727	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1057062 : 1091304

Pseudomonas_phage(68.97%)

integrase,transposase,tail,holin

attL 1055774:1055790|attR 1091478:1091494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1055774:1055790	attL	NA	NA	NA	NA
WP_005597454.1\|1057062_1057539_-	hypothetical protein	A0A0M5MXL4	Ralstonia_phage	2.6e-12	38.0
WP_005597456.1\|1057584_1057746_-	hypothetical protein	NA	NA	NA	NA
WP_005597458.1\|1057742_1057955_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_005597460.1\|1057951_1058476_-	host-nuclease inhibitor Gam family protein	F6MIJ0	Haemophilus_phage	1.4e-40	49.4
WP_005597463.1\|1058468_1058717_-	hypothetical protein	NA	NA	NA	NA
WP_005597467.1\|1058709_1059882_-	AAA family ATPase	A4JWN1	Burkholderia_virus	3.8e-110	55.3
WP_005597469.1\|1059904_1061707_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9SGQ3	Pseudomonas_phage	4.2e-116	40.1
WP_005597471.1\|1061717_1062704_-	hypothetical protein	J9SND0	Pseudomonas_phage	1.9e-22	27.4
WP_005597473.1\|1062714_1063017_-	helix-turn-helix domain-containing protein	A0A0S4L7B4	Pseudomonas_phage	5.6e-13	44.0
WP_005597478.1\|1063241_1063436_-	DNA-binding protein	NA	NA	NA	NA
WP_005597479.1\|1063532_1063985_+	helix-turn-helix domain-containing protein	A0A1S5NPU3	Burkholderia_phage	3.1e-07	30.8
WP_005597482.1\|1063985_1064405_+	hypothetical protein	NA	NA	NA	NA
WP_005601429.1\|1064426_1064945_+	hypothetical protein	NA	NA	NA	NA
WP_005597484.1\|1064980_1066018_+	hypothetical protein	NA	NA	NA	NA
WP_005597487.1\|1066014_1066470_+	hypothetical protein	NA	NA	NA	NA
WP_005597489.1\|1066591_1066846_-	hypothetical protein	B7SDP6	Haemophilus_phage	7.4e-19	51.9
WP_005597491.1\|1067061_1067436_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.7e-22	52.2
WP_005597492.1\|1067438_1068047_+	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	4.2e-60	61.2
WP_005597494.1\|1068241_1068472_+	hypothetical protein	NA	NA	NA	NA
WP_005619736.1\|1068574_1068925_+	hypothetical protein	NA	NA	NA	NA
WP_005597499.1\|1068926_1069232_+	hypothetical protein	Q5ZQY7	Pseudomonas_phage	5.1e-22	51.0
WP_005597501.1\|1069241_1069781_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	3.1e-46	52.2
WP_043991822.1\|1069780_1071400_+	hypothetical protein	Q6QIC1	Burkholderia_phage	6.8e-182	64.2
WP_005597506.1\|1071402_1072914_+	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	2.2e-142	52.7
WP_005597508.1\|1072906_1074157_+	hypothetical protein	J9STS2	Pseudomonas_phage	8.0e-106	46.6
WP_005597511.1\|1074263_1074755_+	phage virion morphogenesis protein	Q5ZQY1	Pseudomonas_phage	2.8e-30	38.4
WP_005597513.1\|1074978_1075995_+	peptidase	Q5ZQY0	Pseudomonas_phage	3.0e-42	61.2
WP_005597515.1\|1075991_1076360_+	DUF2190 family protein	NA	NA	NA	NA
WP_005597517.1\|1076410_1077337_+	hypothetical protein	A0A0S4L2T7	Pseudomonas_phage	1.4e-107	63.6
WP_005597519.1\|1077345_1077855_+	DUF1320 domain-containing protein	Q5ZQX5	Pseudomonas_phage	1.7e-30	41.8
WP_005597521.1\|1077847_1078300_+	hypothetical protein	J9SH57	Pseudomonas_phage	5.8e-14	33.3
WP_005597522.1\|1078296_1078554_+	hypothetical protein	NA	NA	NA	NA
WP_005597524.1\|1078553_1079297_+	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	2.3e-60	49.4
WP_005597527.1\|1079343_1079751_+	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	6.3e-20	37.6
WP_005597533.1\|1079952_1080165_-	hypothetical protein	NA	NA	NA	NA
WP_005597535.1\|1080176_1083536_+	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	1.1e-106	31.6
WP_005597537.1\|1083538_1084537_+	hypothetical protein	A0A2D1GMZ0	Marinobacter_phage	4.7e-24	28.1
WP_005597539.1\|1084539_1085505_+	hypothetical protein	A0A0U2KZ01	Pseudomonas_phage	2.3e-20	27.5
WP_005597541.1\|1085504_1087187_+	hypothetical protein	A0A2D1GNY4	Pseudomonas_phage	5.1e-63	38.3
WP_005597543.1\|1087231_1088041_+	phage BR0599 family protein	A0A2D1GNT2	Pseudomonas_phage	3.6e-75	50.5
WP_005597545.1\|1088058_1088310_+	hypothetical protein	A0A2D1GNV4	Pseudomonas_phage	2.0e-24	64.5
WP_005597546.1\|1088314_1088518_+	hypothetical protein	NA	NA	NA	NA
WP_005597548.1\|1088517_1091304_+\|tail	phage tail protein	A0A2D1GNP9	Pseudomonas_phage	1.7e-177	45.9
1091478:1091494	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1328076 : 1337188

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005597987.1\|1328076_1328709_+	repressor LexA	A0A2H4JG58	uncultured_Caudovirales_phage	1.2e-09	48.5
WP_005597989.1\|1328768_1329449_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_005597990.1\|1329534_1330266_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	3.6e-42	48.0
WP_043993299.1\|1330380_1331418_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	6.8e-18	42.9
WP_005597991.1\|1331498_1332674_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2P1ELP3	Moumouvirus	2.3e-14	32.1
WP_005597992.1\|1332881_1334192_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.2e-131	59.4
WP_005597993.1\|1334267_1334897_+	NUDIX hydrolase	NA	NA	NA	NA
WP_005597994.1\|1334910_1335321_+	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_005597995.1\|1335379_1337188_-	ATP-dependent DNA helicase RecQ	A0A1V0SBK0	Catovirus	2.1e-86	37.7

DBSCAN-SWA_5

1667541 : 1672995

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005598694.1\|1667541_1668276_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-14	29.2
WP_005598692.1\|1668286_1669072_-	ABC transporter permease	NA	NA	NA	NA
WP_005598689.1\|1669084_1669627_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.7e-55	54.2
WP_005598688.1\|1669626_1670502_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-42	38.9
WP_005598687.1\|1670501_1671380_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-108	65.3
WP_005598686.1\|1671420_1672482_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-104	55.2
WP_005598685.1\|1672653_1672995_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	5.5e-25	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage