CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_022534	Plautia stali symbiont plasmid pPstS2 DNA, complete genome	0 crisprs	NA	0	0
NC_022533	Plautia stali symbiont plasmid pPstS1 DNA, complete genome	0 crisprs	c2c9_V-U4	0	0
NC_022546	Plautia stali symbiont DNA, complete genome	4 crisprs	cas3,DinG,DEDDh	1	11

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022546_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022546_1

1143961-1144043

Orphan

Consensus_repeat	Method
AGGGTCGCCATTTATGACGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022546_1

>merge|NC_022546|1|1143961-1144043|CRISPRCasFinder
AGGGTCGCCATTTATGACGACCGATTCACCTGGTGAGCATGAATGCGCACCCTGCGTTGTAGGGTCGCCATTTATGGCGACCG

>NC_022546|1|1|1143961-1144043|CRISPRCasFinder
AGGGTCGCCATTTATGACGACCG	ATTCACCTGGTGAGCATGAATGCGCACCCTGCGTTGT
AGGGTCGCCATTTATGGCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_022546.1\|WP_010616318.1\|1138557_1139814_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_022546.1\|WP_010616323.1\|1143008_1143863_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_022546.1\|WP_010616321.1\|1141777_1142176_+\|siroheme-synthase	unknown	unknown	gnl\|CDD\|182351
NC_022546.1\|WP_010616314.1\|1134104_1134383_+\|stress-induced-protein-YchH	unknown	unknown	gnl\|CDD\|182651
NC_022546.1\|WP_072216111.1\|1135775_1136750_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_022546.1\|WP_041387114.1\|1137714_1138341_-\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NC_022546.1\|WP_010616337.1\|1164009_1165791_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_022546.1\|WP_010616332.1\|1158472_1159111_-\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010616335.1\|1162149_1162878_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|185348
NC_022546.1\|WP_010616334.1\|1161184_1162153_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NC_022546.1\|WP_010616329.1\|1153146_1154877_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NC_022546.1\|WP_010616316.1\|1136860_1137718_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NC_022546.1\|WP_010616339.1\|1166461_1167217_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_022546.1\|WP_010616338.1\|1165790_1166222_+\|dihydroneopterin-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236516
NC_022546.1\|WP_010616324.1\|1144068_1145163_-\|sodium-potassium/proton-antiporter-ChaA	unknown	unknown	gnl\|CDD\|182580
NC_022546.1\|WP_010616320.1\|1140937_1141768_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_022546.1\|WP_010616319.1\|1139855_1140938_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NC_022546.1\|WP_010616313.1\|1133254_1133842_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_022546.1\|WP_010616330.1\|1155468_1156029_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|236957
NC_022546.1\|WP_010616331.1\|1157229_1157982_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|183208

Protein	Function_ID	Function_description	E-value
NC_022546.1\|WP_010616318.1\|1138557_1139814_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_022546.1\|WP_010616323.1\|1143008_1143863_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NC_022546.1\|WP_010616321.1\|1141777_1142176_+\|siroheme-synthase	gnl\|CDD\|182351	PRK10278, PRK10278, SirB family protein.	1.36996e-37
NC_022546.1\|WP_010616314.1\|1134104_1134383_+\|stress-induced-protein-YchH	gnl\|CDD\|182651	PRK10692, PRK10692, stress response protein YchH.	2.93632e-46
NC_022546.1\|WP_072216111.1\|1135775_1136750_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_022546.1\|WP_041387114.1\|1137714_1138341_-\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	1.26123e-86
NC_022546.1\|WP_010616338.1\|1165790_1166222_+\|dihydroneopterin-triphosphate-diphosphatase	gnl\|CDD\|236516	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional.	3.09659e-89
NC_022546.1\|WP_010616335.1\|1162149_1162878_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|185348	PRK15451, PRK15451, carboxy-S-adenosyl-L-methionine synthase CmoA.	7.86303e-162
NC_022546.1\|WP_010616337.1\|1164009_1165791_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_022546.1\|WP_010616334.1\|1161184_1162153_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NC_022546.1\|WP_010616329.1\|1153146_1154877_-\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NC_022546.1\|WP_010616316.1\|1136860_1137718_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	3.21774e-177
NC_022546.1\|WP_010616339.1\|1166461_1167217_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	6.07779e-158
NC_022546.1\|WP_010616324.1\|1144068_1145163_-\|sodium-potassium/proton-antiporter-ChaA	gnl\|CDD\|182580	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA.	0
NC_022546.1\|WP_010616320.1\|1140937_1141768_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	9.15977e-132
NC_022546.1\|WP_010616319.1\|1139855_1140938_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NC_022546.1\|WP_010616313.1\|1133254_1133842_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.28424e-108
NC_022546.1\|WP_010616330.1\|1155468_1156029_+\|VOC-family-protein	gnl\|CDD\|236957	PRK11700, PRK11700, VOC family protein.	9.9814e-107
NC_022546.1\|WP_010616331.1\|1157229_1157982_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|183208	PRK11572, PRK11572, copper homeostasis protein CutC; Provisional.	1.8208e-166

>NC_022546.1|WP_010616323.1|1143008_1143863_+|3-deoxy-8-phosphooctulonate-synthase
MTQKVVSIGDIKVANDLPFVLFGGMNVLESQDLAMRICEHYVKVTDKLGIPYVFKASFDKANRSSIKSYRGPGLDEGMKIFQALKQAFGVKIITDVHESWQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFAEGGNDKVILCDRGSNFGYDNLVVDMLGFNVMKKVTNNSPVIFDVTHALQTRDPFGAASGGRRAQVAELARAGMTVGIAGLFIEAHPEPNSAKCDGPSALPLDKLEPFLAQMKAIDDLVKSFPELDTSN
>NC_022546.1|WP_010616321.1|1141777_1142176_+|siroheme-synthase
MASWYPLIKNLHLLTVAITITLFLLRFYWLTTGSALLQRRWVRIAPHINDTFLLLSGALLVLITHFYPFTPQGSWLTEKLLAVIIYIALGSVALSRRPRSMATRWVACLVAVVALLLVIKLAMTKMPLLGIV
>NC_022546.1|WP_010616320.1|1140937_1141768_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MNFWRWLQQAQAALCGGDSPKRDAEILLGFVTGKSRSGLIAFDDSPLNDAQLAQLETLLARRVRGEPIAHLVGEREFWSLPLRVSDATLIPRPDTEVLVEQALLRLPATPSAVLDLGTGTGAIALALASERPDCQITGCDRIAAAVALAQDNAQRLHLTNAGFVLSHWFDDLPAQRFDLIVSNPPYIDAADEHLQQGDVRFEPLSALVAEEAGLADLRLIIERAPHWLQPQGWLLLEHGWQQGEAVRTLLTRNGFLAVTTVEDYGGNPRVTLGQLT
>NC_022546.1|WP_010616319.1|1139855_1140938_+|peptide-chain-release-factor-1
MKSSIVAKLEALQERHEEVEALLGDAGVIGDQDRFRALSREYAQLSDVTRCFREWQQVQEDVETAEMLLDDAEMRDMAQEELKLSRDKREVLEQQLQVLLLPKDPDDERPCFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWQVEIMSANDGEHGGYKEVIARITGDGAYGRMKFESGGHRVQRVPETESQGRIHTSACTVAVMPKLPEAELPDINPGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVLGARIHAAEMAKRQAAEASTRRNLLGSGDSSDRIRTYNFPQGRVTDHRINLTLYRLDETMEGKLDTLIEPIVQEYQADQLAALAGQE
>NC_022546.1|WP_010616318.1|1138557_1139814_+|glutamyl-tRNA-reductase
MTLLALGINHKTAPVALRERVSFTPDTLDQALNSLLSQPMVQSGVVLSTCNRTELYLSVEQQTDLQERLVRWLCEYHDLREEDVRNSLYWHQDNAAVSHLMRVASGLDSLVLGEPQILGQVKKAHADSSRDHALSSELERMFQKTFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSSVNVLLVGAGETIELVARHLREHSVRKLMIANRTRERAQLLADEVGAEVIGLADIETRLADADIIISSTASPLPIIGKGMVERALKARRNQPMLLVDIAVPHDVEPEVGKLANAYLYSVDDLQAIIEQNMAQRKAAAVQAESIVVQESGEFMAWLRAQSAGETIREYRAQADDVRAELQDRALAALRQGADAEKVLQELAHKLTNRLIHAPTKSLQQAARDGDSERLQILRDSLDLE
>NC_022546.1|WP_041387114.1|1137714_1138341_-|lipoprotein-localization-protein-LolB
MHLPPRQLLRLLPLASVLLAACSINKPQQGPGPSTTSPQWQQHQQAVAKITQYQTRGAFAYLSDKQKVYARFNWQQTAADRYRLLLTNPLGSTELQLDAQGSVVQIVDNKGKRYVSNDAERMISPLTGMDIPLANLRQWMMGLPGDASDYQLNNNYQLQSLTYSRNGQQWKVNISDYDNKVNPPLPANLELTEGGQRIKLRMDSWTTQ
>NC_022546.1|WP_010616316.1|1136860_1137718_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MITTWPAPAKLNLFLYITGRRADGYHNLQTLFQFLDVGDTLEITPDNSGSITLLTPLDGVADEDNLIVRAALALRAAAADKGTLPPQAGARIELEKRLPMGGGLGGGSSDAATVLVALNHLWRTQLSVDELANLGVRLGADVPVFVRGHAAFAEGVGEQLQPAFPAEKWYLVAHPSVSIATPDLFRDPELTRDSPIRTLDELLQRPFHNDCEAVARKRFREVDALLSWLLEYAPSRLTGTGACVFAEFDTESAARQVLELAPKWICGFVARGLNLSPLQRTLSWL
>NC_022546.1|WP_072216111.1|1135775_1136750_-|ribose-phosphate-pyrophosphokinase
MDAKPEVLLVPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQIGLENPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAVENLRKSVIDQVIVCDTIPLSEEMKSLPNVHTLTLSGMLAEAIRRISNEESISAMFEH
>NC_022546.1|WP_010616314.1|1134104_1134383_+|stress-induced-protein-YchH
MKRQHCRTVGNGLMCLGLLTMVLRVGYSIINPLPSVNLPQFLAHGAMFSIFVGVLLWLVGARVSERERVEDRYYWLRHYGDKRCRRDHHSTH
>NC_022546.1|WP_010616313.1|1133254_1133842_-|aminoacyl-tRNA-hydrolase
MSSIKLIVGLANPGAEYAATRHNAGAWYVDLLCSRHNQSLKEEPKFFGYTARLSLAGEDVRLLVPTTFINLSGKAVAAMATFYRITPEEILVAHDEMDLPPGVAKFKQGGGHGGHNGLKDIISKLGNNNNFHRLRVGIGHPGDRNKVTGFVLGKAPASEQKLIDDAVDEAVRCTELWLKEDKIKAMNRLHAFKAS
>NC_022546.1|WP_010616324.1|1144068_1145163_-|sodium-potassium/proton-antiporter-ChaA
MAGHEKTRHSEYSLIFPILALAVLSFFGGQTALLPVIGINLLALVAILSSAFSVVRHADVLAHRLGEPYGSQILSLSVVILEVSLISALMATGDAAPALMRDTLYSIIMIVTAGLVGCALLLGGRKFATQYVNLAGVKQYMIAIFPLAILVLVFPNALPGGNFTIAQALIIAAISAAMYGVFLLIQTKTHQSLFVYEHEDESDDGDPPHHGKPSAHSSLWHTAWLIVHLIAVISVTKMNANSLEMLLTEMNAPEQFTGFLVALLILSPEGLGAIKAVLMNQVQRAMNLFFGSVLATISLTVPTVTIIATLTGQQLIFGLEPPHMVVMSAVLILCHISFSTGRTNVLNGAAHLALFAGYLLTIML
>NC_022546.1|WP_010616329.1|1153146_1154877_-|arginine--tRNA-ligase
MNIQALLSDKVSQAMVAAGAPADCEPQVRQSAKVQFGDYQANGIMAVAKKLGQVPRQLAEQVVQHLDLAGIASKVDIAGPGFINIFLDRQWLAQQAAQALQLPRLGVSEVTPQTIVIDYSAPNVAKEMHVGHVRSTIIGDAVVRTQEFLGHHVIRANHVGDWGTQFGMLIAYLEKQQNEHHEDIALADLEAFYREAKRTYDEDEAFAERARGYVVKLQGGDEYCRAMWKKLVDITMSQNQQVYDRLNVTLTRKDVMGESLYNDMLPGIIADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLQQAWTIVRKAGYVPESVPLEHHAFGMMLGKDGRPFKTRSGGTIKLSDLLDEAVERAHALVSEKNPEMSAAELKELVEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEADSLRGDIILTDEREALLATRLLQFEETITQVARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAEEENVRNSRLQLAALTAKTLKQGLDTLGIKTVERM
>NC_022546.1|WP_010616330.1|1155468_1156029_+|VOC-family-protein
MNLDFPSELSVLKQDLSRFEPALQQFAARLGLDLTQHEADNVAVRCHQFATAERWKAGLLQIGDQFSEAMINGRPICLFKLHQPLRIAGWQVDVIELPWPGEKLYRHEGWEHVEIVLRGEPETLGMRAMALLADEALTQPGIAFKTSTPQGENERLPNPTLAVTDGQITIKFHPWRLEEIVASEQA
>NC_022546.1|WP_010616331.1|1157229_1157982_+|copper-homeostasis-protein-CutC
MTKLEICCYGIDCAMTAQASGADRVELCSAPREGGLTPSAGMLEAAQRELTIPVHPIVRPRGGDFCYTAREFEVMKSDVARIRELGFLGLVIGMLDEDAHVDTVRMQQIMALCDGMAVTFHRAFDLCHSPKRSLEVLTDLGIARILTSGQQQSAETGIALLRELNEYSTGPIIMAGAGVRLSNLQKFLDSGLQEVHSSASRAVASPMRYRKAGVSMCSEAETDEFSRSCVDGDVVEAMKSMMQMSVDRVA
>NC_022546.1|WP_010616332.1|1158472_1159111_-|hypothetical-protein
MEQRSQSTDSLYDFLYVDAHRASTLITQLYAPDAITSIKRISSEGEKATKSGSVGIPIANGKLSVEDAINQTQEKSFDASWALPINLLDKLSELDLINTGVEGQILGRIVLVRGKMRLFDISFFQKSLPFVSKVMSNELKGKSNNKKVKPDDLELAPGMTVGLINQFLRYTTSNIELLNPFIMLVQLHSNVSSAIIIKNTRCHHCHIIADRK
>NC_022546.1|WP_010616334.1|1161184_1162153_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDFGRFYQQIATGPLASWLEVLPAQVAAWQRENLHGHFRNWEKSVDNLPLLVPQQLDLLHSVSAQHDALTDRQRAGIEKLLRNRMPWRKGPFSLYGCDIDTEWRSDWKWDRVLPHISSLAGRTVLDVGCGSGYHMWRMIGAGAQLVVGIDPMQLFLCQFEAVRKLLGDDRRAHLLPLGIEQLPALQAFDTVFSMGVLYHRRSPLDHLLQLKNQLVSDGELVLETLVIEGDENAVLVPGERYAQMRNVYFIPSAAALKNWLEKCGFVDVRIADYAITSVEEQRRTDWMTSESLAEFLDPHDSSKTIEGYPAPLRAVLVARKP
>NC_022546.1|WP_010616335.1|1162149_1162878_-|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MSDRDTLFSAPIDKLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPNSQVYDLGCSLGAATLAVRRNIQAPGCQIIAVDNSPAMVERCRRHIDAFRAATPVQVLEADIRDIHIENASLVVLNFTLQFLEPDARRTLLQKIATGLNPGGALVLSEKFSFEDADVGELLFNMHHDFKRANSYSELEISQKRSMLENVMLTDSVETHKARLKSAGFAHAELWFQCFNFGSLVALK
>NC_022546.1|WP_010616337.1|1164009_1165791_+|aspartate--tRNA-ligase
MRTEYCGQLNLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIAQVFFDADHQQAFQLASELRNEFCIQITGTVRAREEKNRNSDMATGDIEVFAHELNIINRAEPMPLDSNQTNSEEARLTYRYLDLRRPEMAQRLKNRARITSFVRRFMDGEGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMISGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMSAEQVRSVMERMIRELWLDIKGIDLGDFPQMTFAEAMNRYGSDKPDLRNPMELVDVADLLKSVEFQVFAGPANDPKGRVAALRVPGGAALTRKQIDEYGSFVGIYGAKGLAWMKINARASGFDGVQSPVVKFLTPDIVEAILQRTDAQDGDLIFFSADRAKVVADALGALRLKVGRDLQITNDKAWAPLWVVDFPMFEEDDEGGLAAMHHPFTSPKALTAEQLAADPTQAVANAYDMVINGYEVGGGSVRIHSGNMQQTVFSILGISEEEQREKFGFLLDALKFGTPPHAGLAFGLDRLTMLLTDTDNIRDVIAFPKTTAAACLMTEAPSEANPAALADLGIQIAPKKVNPETK
>NC_022546.1|WP_010616338.1|1165790_1166222_+|dihydroneopterin-triphosphate-diphosphatase
MGYKHPVSVLVVIFAQDTGRVLMLQRRDDPSFWQSVTGSLEPGETPAQTAQREVAEELAIDIAAEGLVLEDCHKQIEFEIFPHYRHRYVPGITHNREHWFRLALPAERQPLLSEHLAAQWLTPAAAAALTRSWSNRQAIDEFI
>NC_022546.1|WP_010616339.1|1166461_1167217_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNNMTRDTMNRAIARGVGGEDDSNMETIIYEGYGPGGSAVMVECLSDNRNRNRNRTVGEVRHAFSKTGGNLGTDGSVSYLFSKKGVISFAPGQDEDAVMEAALEAGAEDVVSYDDGAIDVFTAWEELGSVRDALEATGLKADSAEVSMIPSTKAELDAETAPKLLRLIDMLEDCDDVQEVYHNGEISDEVAETL

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Crispr_ID: NC_022546_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022546_2

1468365-1468490

Orphan

Consensus_repeat	Method
TCTCCCGCAAGCGGGAGAGGGGATATAAAGCGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022546_2

>merge|NC_022546|2|1468365-1468490|CRISPRCasFinder
TCTCCCGCAAGCGGGAGAGGGGATATAAAGCGCAGTGCTGAGGTAGCTAAGGACGAGCGCTGGATATGACGTCCGCACCGGGCGGTCCCTTCTCCCGCAAGCGGGAGAGGGAATATAAAGCGCAGT

>NC_022546|2|2|1468365-1468490|CRISPRCasFinder
TCTCCCGCAAGCGGGAGAGGGGATATAAAGCGCAGT	GCTGAGGTAGCTAAGGACGAGCGCTGGATATGACGTCCGCACCGGGCGGTCCCT
TCTCCCGCAAGCGGGAGAGGGAATATAAAGCGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_022546.1\|WP_010616787.1\|1484512_1484734_+\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010616792.1\|1477933_1478923_+\|glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NC_022546.1\|WP_010616793.1\|1475086_1476052_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_022546.1\|WP_010617107.1\|1462928_1463303_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|337191
NC_022546.1\|WP_010617106.1\|1462512_1462935_+\|regulatory-protein-GemA	unknown	unknown	gnl\|CDD\|377635
NC_022546.1\|WP_010616791.1\|1479080_1479350_+\|DUF2502-domain-containing-protein	unknown	unknown	gnl\|CDD\|371199
NC_022546.1\|WP_082231759.1\|1463447_1463660_-\|DUF4145-domain-containing-protein	unknown	unknown	gnl\|CDD\|372658
NC_022546.1\|WP_022547927.1\|1466332_1467673_-\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NC_022546.1\|WP_010617114.1\|1470234_1471242_+\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NC_022546.1\|WP_022547326.1\|1462195_1462375_+\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010617108.1\|1464234_1464507_+\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010616789.1\|1482396_1483482_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238527
NC_022546.1\|WP_010616785.1\|1485651_1486005_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NC_022546.1\|WP_010617112.1\|1467788_1468331_+\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NC_022546.1\|WP_010616786.1\|1484751_1485540_+\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NC_022546.1\|WP_022547935.1\|1481013_1482204_+\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NC_022546.1\|WP_010617113.1\|1468710_1470066_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NC_022546.1\|WP_010617109.1\|1464928_1465252_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
NC_022546.1\|WP_010617110.1\|1465271_1465610_-\|glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|132621
NC_022546.1\|WP_010617111.1\|1465873_1466260_-\|cytochrome-b562	unknown	unknown	gnl\|CDD\|185018

Protein	Function_ID	Function_description	E-value
NC_022546.1\|WP_010617109.1\|1464928_1465252_-\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	8.2253e-56
NC_022546.1\|WP_010616792.1\|1477933_1478923_+\|glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NC_022546.1\|WP_010616793.1\|1475086_1476052_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	0
NC_022546.1\|WP_010617114.1\|1470234_1471242_+\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NC_022546.1\|WP_010617106.1\|1462512_1462935_+\|regulatory-protein-GemA	gnl\|CDD\|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	2.84507e-41
NC_022546.1\|WP_082231759.1\|1463447_1463660_-\|DUF4145-domain-containing-protein	gnl\|CDD\|372658	pfam13643, DUF4145, Domain of unknown function (DUF4145). This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.	2.59433e-06
NC_022546.1\|WP_022547927.1\|1466332_1467673_-\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	0
NC_022546.1\|WP_010616791.1\|1479080_1479350_+\|DUF2502-domain-containing-protein	gnl\|CDD\|371199	pfam10697, DUF2502, Protein of unknown function (DUF2502). Members of this family are all Gammaproteobacteria. The function is not known.	3.0484e-07
NC_022546.1\|WP_010616789.1\|1482396_1483482_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	4.44739e-90
NC_022546.1\|WP_010616785.1\|1485651_1486005_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	1.50557e-41
NC_022546.1\|WP_010617112.1\|1467788_1468331_+\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	4.33703e-82
NC_022546.1\|WP_010616786.1\|1484751_1485540_+\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	3.97077e-82
NC_022546.1\|WP_022547935.1\|1481013_1482204_+\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.24473e-159
NC_022546.1\|WP_010617113.1\|1468710_1470066_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_022546.1\|WP_010617107.1\|1462928_1463303_+\|DNA-binding-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	2.76425e-50
NC_022546.1\|WP_010617110.1\|1465271_1465610_-\|glycine-dehydrogenase	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	5.58676e-35
NC_022546.1\|WP_010617111.1\|1465873_1466260_-\|cytochrome-b562	gnl\|CDD\|185018	PRK15058, PRK15058, cytochrome b562; Provisional.	9.39436e-33

>NC_022546.1|WP_010617112.1|1467788_1468331_+|ribosome-associated-protein
MTKQPEDWLDDVPDNQEEEDEEIIWVSKSEIKRDAEELKRLGAELVDLGKNSLDKIPLDEQLRDAIELAQRIKKEGRRRQLQLIGKMLRQRDEEPIRLALDKLKNRHNQQVALFHKLEQLRDRLIEQGDDAVAEVLNLYPHADRQQLRSMIRNAQKEKAANKPPKAARQIFQYLRELAEA
>NC_022546.1|WP_022547927.1|1466332_1467673_-|metalloprotease-PmbA
MNVSTQVAEQRKVLEQAVAQALELAQASTDGAEVAVTKTTGIGVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPDAIKRTVQAAIDIARYTSPDPCAAPAERDLLAFEAPDLDLYHPWEIDADRAIELTAQAEQAALQADKRITNTEGGSFNSHVGIKVFGNSHGMLQSYCSSRHSLSSCVIAEHNGDMERDYAYTIGRAMGDLQSADWVGAECARRVLARLSPRKLPTMKAPVLFAPEVATGLFGYLVGMISGSSVYRKSTFLLDALGQQILPSWLTIEEKPHLLKGLASTPFDSEGVRTEAREIVKDGVLQNWLLTSYSARKLGLQSTGHAGGIHNWRIAGQGHSFEDLVKQMGRGLIVTEMMGSSVSAMTGDYSRGAAGFWVENGEIQYAVSEITIAGNLKDMWLNMVTVGNDIETRSNIQCGSVLLPEMKIAGQ
>NC_022546.1|WP_010617111.1|1465873_1466260_-|cytochrome-b562
MRKHVIAMLSLSLLFSSASLFAADLEQDMDTLKDGLSVVKKTSDAQEMHAALGKMCAAAQDAKNSTPEKLEGQGADSAQIKDYHAGLDSLIAQIDVGDQLAQANKLDEAKTEAKKLEDIRNANHKKFC
>NC_022546.1|WP_010617110.1|1465271_1465610_-|glycine-dehydrogenase
MRSDAVPLKPSTPEAIQALADKVMNQIAALYAAHHIAANAVQQQMLASHVRAMAARSLTGEALPDVEAELFEDISPETMALAQQVVDLFGNLPVEEAWLLSVHIEVAKSNEA
>NC_022546.1|WP_010617109.1|1464928_1465252_-|hypothetical-protein
MVTVVIGDRLGKGQKVAAGVEKAGGRAVVVPGVAADMKLGDVMKAENADFGISFCGSGGAGAITAQNKYRYKAKHGMRSVDEGVTAINEGATVLGFGFMDKEELDRT
>NC_022546.1|WP_010617108.1|1464234_1464507_+|hypothetical-protein
MSKNSLMKKIDTILCEMGERENVIYRATDVVVSGDTIEGVRAMADLLLVHKHLLAHKELQLSKIRAELAVAQARVQAMIHPLPPAVFDIE
>NC_022546.1|WP_082231759.1|1463447_1463660_-|DUF4145-domain-containing-protein
MQLINNAIKRLKTVEAIADWAHTIRVIGNDAVHGDEYDPTPAEADEAVRFTTLFLELLFSYPERIKTLKK
>NC_022546.1|WP_010617107.1|1462928_1463303_+|DNA-binding-protein
MLENTFRSKGPELLVELAEHTAQTVRQIIDVDPAVASQIGDAVASQMMAVWGGQNVYFPMGLIWKVSQRDREIFADFNGHNHHALARKYKVSLQWIYSVVKRVKKEELARIQGSLFEDNAPLED
>NC_022546.1|WP_010617106.1|1462512_1462935_+|regulatory-protein-GemA
MTRQKYLQLIHIAAHQLKLDDATYRQMLHRLTGKTSAKALNPGQLAQVLNALKTQGFRIQPHQANTKKQTDRPQLQKIQALWQAMAQEGIVRDASATALAHFVKRETGCDSPYWLDSQQASQVIEKLKQWQKRVARAASC
>NC_022546.1|WP_022547326.1|1462195_1462375_+|hypothetical-protein
MWILILAMYASPYSDNVFSSLHTQDFDTATACQQAARLFAKKFETFRDIDARAICVKKS
>NC_022546.1|WP_010617113.1|1468710_1470066_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MRIYILGICGTFMGGLAMLARSLGHEVTGSDANVYPPMSTLLQQQGIELTEGYDASQLDPAPDLVIIGNAMTRGNPCVEAVLERNTPYLSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMAARILEACGLEPGFIIGGLPGNFDVSAKLGKSPFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILLPEHDHNIKQVMAMGCWSEQESVGDNGRWQANKLVPDASRWEAWLDGEKVAEVNWALVGEHNMHNGLMAIAAARHVGVKPCDAGEALNSFINGRRRLELRGEVNAIKVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGVSKSELAPSLGRADEVFLFQPHHIPWQVADVAEACIQPAHWSADIDTLVEMVAKAAQPGDSILVMSNGGFGGIHQKLLERLGK
>NC_022546.1|WP_010617114.1|1470234_1471242_+|class-1-fructose-bisphosphatase
MKTLGEFIVEKQHDFPHATGELTALISSIKLGAKIIHRDINKAGLVDILGASGVENVQGEQQMKLDLFANEKLKAALKARGVVAGIASEEEDEFVIFEGSENGKYVVLMDPLDGSSNIDVNVSVGTIFSIYHRISEPGTPITEADFMQPGHKQVAAGYVVYGSSTMMVYTTGVGVHAFTYDPSLGVFCLSHERMTFPEKGYTYSINEGNYIRFPQGVKKYLKFCQEEDVSTKRPYTSRYIGSLVADFHRNLLKGSIYLYPSIASHPKGKPRLLYECNPMAFLAEQAGGKASDGKNRILDIQPETLHQRCPFFCGNDAMVDDVERFMREFPDEHQA
>NC_022546.1|WP_010616793.1|1475086_1476052_-|glucokinase
MTKYALVGDVGGTNARLALCEVETGAISQAKTFSTSDYDNLEAVIRHYLDEQKQDISDGCIAIACPITGDWVEMTNHDWAFSTRQMKESLGFTTLEIINDFTAVSMAIPMLTAQDVLQFGGKSPVQDKTIAIYGAGTGLGVSHLVHVDKRWVSLPGEGGHVDFAPNSEEEDAILEVLRAELGHVSAERVLSGSGLVNLYRAIVKSDQREPENLKPKDVTERALQDSCIDCRRALTLFCVIMGRFGGNLALNLGTFGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFRDYLVDIPVYMITHDQPGLLGAGAHLRQALGRVL
>NC_022546.1|WP_010616792.1|1477933_1478923_+|glyceraldehyde-3-phosphate-reductase
MSTFPHAERYHQMQYRRSGRSGLKLPAISLGLWHNFGDSTRVDNSRALLRHVFDRGITHFDLANNYGPPPGSAESNFGRILREDFHGLRDELVISTKAGYTMWDSPYGDWGSRKYLISSLDQSLKRMGLEYVDIFYHHRPDPETPLEETMRALDQVVRQGKALYAAISNYPADKAAAAIAMLRDLGTPCLIHQPRYSMFERTPEQGLLDVLGDDGVGCIAFSPLAGGVLTDRYLQGIPQDSRIASGSKFLNENQLTPEKMAKVQQLQALAQQRGQKLAQMALRWVLRDTRVTSVPIGASKTAQIDDAADMLSQPELTADEIAAIEQILV
>NC_022546.1|WP_010616791.1|1479080_1479350_+|DUF2502-domain-containing-protein
MKRAILFAALLATLSPLALHTAEASSATINLAPGVTLHLGDRDHRGYYWDGGRWRELRWWHDRYQYNHHRWWRHDHRHDRHDRHDHHHH
>NC_022546.1|WP_022547935.1|1481013_1482204_+|NupC/NupG-family-nucleoside-CNT-transporter
MSHILHFLLALVVVAVLALLVSHDRKSIRIRYIVQLLVIEVLLAWFFLNSEAGLGFVKGFAGLFDHLLKYAAEGTNFVFGNMNEKGLAFFFLNILCPIVFISALIGILQHFRILPWVIRAIGTVLSKINGMGKLESFNAVSSLILGQSENFITYKDILGKMSQRRMYTMAATAMSTVSMSIVGAYMTMLQPKYVVAALVLNMFSTFIVLSLINPYHVDSEEDLQLQDLHKGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISGLNPLFDTIFGISFQGVLGYVFYPFAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAGQLSPHAEGILSVFLVSFANLSSIGIVAGAIKGLHEEQGNVVSRFGLKLLYGSTLVSVLSAAIAGLVLGF
>NC_022546.1|WP_010616789.1|1482396_1483482_+|LLM-class-flavin-dependent-oxidoreductase
MSIQFLGMIGHRLASEIISASGTLFDKDYIARFARAHEAAGFDRILVGYWSDQPDGFLVTTHAAAHTQKIKFLLAHRPGFVAPTLAARKLASLDHPTDGRLAVHIISGGSDSEQRRDGDFLSKAERYARTDEFLSVLKQSLESPQPYDHQGRFYQAEQAFSAIKPLQHKLPIYFGGSSQEAIDVAARHADVFALWGEPLKGAAETVRNVRAAAAQGRQIAFNISFRPILGKTEKEAWERAEHIRATAEKQLADTGYIFGLPKPQSVGAQRLLAAANESERHDKVLWTGVAKLVQGGYNSTALVGAPDQVSEALLDYYRLGIHSVLIRGFDPLNDAVEYGRELLPLTREKVAALSATEKRSA
>NC_022546.1|WP_010616787.1|1484512_1484734_+|hypothetical-protein
MAFFSAQRVLVIPALSRYLNAASTVRHAEVNFRLKMLASGLLSLMVRVKLSALINRLAVQGIHSLTGQHVLLV
>NC_022546.1|WP_010616786.1|1484751_1485540_+|formate/nitrite-transporter-family-protein
MSLHTPKEIAQLAIQAGVAKSRLPVSTLLILGFMAGAFIATGFLLDLHVINQLPAEWGSFAGFLGAAVFPVGLILTVLAGGELLTGNMMTLSIAWFARRISGFSVLRNWFWVTIANFIGSVAVAWFFGHLLGMTEGDYLKKTVAIAHAKVNADFMHAFISGISCNWLVCLAVWLAFASKDMVGKIFGMWFPVMAFVAIGFQHVVANMFIVPAAIFAGQMSWAEFAPNVVAVFLGNGVGGAIFVGLTYFLAFRPAQAAVSEAQ
>NC_022546.1|WP_010616785.1|1485651_1486005_+|putative-DNA-binding-transcriptional-regulator
MKKEWLTPEELALETGYSRQTVNKWIKRENWTTTPKPDVQGGKARLIHIDERVKSFIQSTRHANEPAANYGAQQNTLPALLINSVQQMTATEQEQLAALLLREGIRGVLQRLGIQEE

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Crispr_ID: NC_022546_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022546_3

2582484-2582568

Orphan

Consensus_repeat	Method
AGGGTCGCCATTTATGGCGACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022546_3

>merge|NC_022546|3|2582484-2582568|CRISPRCasFinder
AGGGTCGCCATTTATGGCGACCAAAAATGTGCAAAACATGCCCGAAATGCGCAGTGCCCCGCAGGGTCGCCATTCATGGCGACCA

>NC_022546|3|3|2582484-2582568|CRISPRCasFinder
AGGGTCGCCATTTATGGCGACCA	AAAATGTGCAAAACATGCCCGAAATGCGCAGTGCCCCGC
AGGGTCGCCATTCATGGCGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_022546.1\|WP_010616544.1\|2577891_2578356_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_022546.1\|WP_010615877.1\|2588805_2589372_-\|phage-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|377729
NC_022546.1\|WP_082231736.1\|2576232_2576469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274264
NC_022546.1\|WP_010616542.1\|2576894_2577191_+\|HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182222
NC_022546.1\|WP_010615871.1\|2594125_2594491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378457
NC_022546.1\|WP_041387237.1\|2588389_2588800_-\|phage-GP46-family-protein	unknown	unknown	gnl\|CDD\|377830
NC_022546.1\|WP_051588482.1\|2584618_2585260_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372216
NC_022546.1\|WP_010616545.1\|2578452_2578881_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_022546.1\|WP_022548556.1\|2585692_2586748_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|372216
NC_022546.1\|WP_010616536.1\|2569303_2569543_+\|cell-division-protein-ZapB	unknown	unknown	gnl\|CDD\|225616
NC_022546.1\|WP_022548541.1\|2576037_2576226_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NC_022546.1\|WP_082231737.1\|2576386_2576629_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|133459
NC_022546.1\|WP_010616537.1\|2570246_2570780_-\|MltR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236817
NC_022546.1\|WP_010616539.1\|2572583_2573300_-\|DUF3053-domain-containing-protein	unknown	unknown	gnl\|CDD\|371434
NC_022546.1\|WP_010616543.1\|2577237_2577831_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_022546.1\|WP_022548552.1\|2582586_2583492_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129977
NC_022546.1\|WP_010615870.1\|2594490_2595999_-\|tail-sheath-protein	unknown	unknown	gnl\|CDD\|226821
NC_022546.1\|WP_010615872.1\|2593805_2594129_-\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NC_022546.1\|WP_010615880.1\|2586734_2587325_-\|DUF2313-domain-containing-protein	unknown	unknown	gnl\|CDD\|226301
NC_022546.1\|WP_010615873.1\|2590482_2591805_-\|DNA-circularization-protein	unknown	unknown	gnl\|CDD\|377784

Protein	Function_ID	Function_description	E-value
NC_022546.1\|WP_010616544.1\|2577891_2578356_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.78778e-23
NC_022546.1\|WP_010615877.1\|2588805_2589372_-\|phage-baseplate-assembly-protein	gnl\|CDD\|377729	pfam06890, Phage_Mu_Gp45, Bacteriophage Mu Gp45 protein. This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. The function of this family is unknown although it has been suggested that family members may be involved in baseplate assembly.	2.45537e-50
NC_022546.1\|WP_082231736.1\|2576232_2576469_+\|hypothetical-protein	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	2.83143e-20
NC_022546.1\|WP_010616542.1\|2576894_2577191_+\|HTH-type-transcriptional-regulator	gnl\|CDD\|182222	PRK10072, PRK10072, HTH-type transcriptional regulator.	2.95913e-40
NC_022546.1\|WP_010615871.1\|2594125_2594491_-\|hypothetical-protein	gnl\|CDD\|378457	pfam10618, Tail_tube, Phage tail tube protein. This bacterial family of proteins contains phage tail tube proteins related to the Mu phage tail tube protein M. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.	5.79865e-46
NC_022546.1\|WP_041387237.1\|2588389_2588800_-\|phage-GP46-family-protein	gnl\|CDD\|377830	pfam07409, GP46, Phage protein GP46. This family contains GP46 phage proteins (approximately 120 residues long).	1.7629e-48
NC_022546.1\|WP_051588482.1\|2584618_2585260_+\|hypothetical-protein	gnl\|CDD\|372216	pfam12604, gp37_C, Tail fibre protein gp37 C terminal. This domain family is found in bacteria and viruses, and is typically between 49 and 166 amino acids in length. The family is found in association with pfam03906. In T-even phages, gp37 and gp38 are components of the tail Faber that are critical for phage-host interaction.	3.0938e-40
NC_022546.1\|WP_010616545.1\|2578452_2578881_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	2.75255e-75
NC_022546.1\|WP_022548556.1\|2585692_2586748_-\|phage-tail-protein	gnl\|CDD\|372216	pfam12604, gp37_C, Tail fibre protein gp37 C terminal. This domain family is found in bacteria and viruses, and is typically between 49 and 166 amino acids in length. The family is found in association with pfam03906. In T-even phages, gp37 and gp38 are components of the tail Faber that are critical for phage-host interaction.	1.06132e-36
NC_022546.1\|WP_010616536.1\|2569303_2569543_+\|cell-division-protein-ZapB	gnl\|CDD\|225616	COG3074, COG3074, Uncharacterized protein conserved in bacteria [Function unknown].	1.74679e-19
NC_022546.1\|WP_022548541.1\|2576037_2576226_+\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	4.03945e-25
NC_022546.1\|WP_082231737.1\|2576386_2576629_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|133459	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.	1.34979e-22
NC_022546.1\|WP_010616537.1\|2570246_2570780_-\|MltR-family-transcriptional-regulator	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	3.07562e-100
NC_022546.1\|WP_010616539.1\|2572583_2573300_-\|DUF3053-domain-containing-protein	gnl\|CDD\|371434	pfam11254, DUF3053, Protein of unknown function (DUF3053). Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.	3.85094e-99
NC_022546.1\|WP_010616543.1\|2577237_2577831_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	2.28888e-26
NC_022546.1\|WP_022548552.1\|2582586_2583492_-\|MFS-transporter	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.16992e-73
NC_022546.1\|WP_010615870.1\|2594490_2595999_-\|tail-sheath-protein	gnl\|CDD\|226821	COG4386, COG4386, Mu-like prophage tail sheath protein gpL [General function prediction only].	1.10829e-144
NC_022546.1\|WP_010615872.1\|2593805_2594129_-\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	0.000452862
NC_022546.1\|WP_010615880.1\|2586734_2587325_-\|DUF2313-domain-containing-protein	gnl\|CDD\|226301	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown].	8.64982e-52
NC_022546.1\|WP_010615873.1\|2590482_2591805_-\|DNA-circularization-protein	gnl\|CDD\|377784	pfam07157, DNA_circ_N, DNA circularisation protein N-terminus. This family represents the N-terminus (approximately 100 residues) of a number of phage DNA circularisation proteins.	2.26044e-46

>NC_022546.1|WP_010616545.1|2578452_2578881_+|organic-hydroperoxide-resistance-protein
MSLEKVIYTAKAKATGGRDGRATSSDNVLDVKLGVPKEMGGAGGEVTNPEQLFAAGYSACFLGAMKFVAGRDKIAMPKDAWIEGEVGIGSIPTGFGIEAKLNIHLPEMDAAEAQKLVDAAHIVCPYSNATRGNIDVTLNIIN
>NC_022546.1|WP_010616544.1|2577891_2578356_+|MarR-family-transcriptional-regulator
MNSNQDDKKVKPAPLQLDQHLCFALYSANLAMHKVYRQLLAALEITYPQYLVMLVLWHQDDLTVSEIGEKLFLDSATLTPLLKRLESAGLLRRQRSRQDERQVVVTLTDQGRALQEKAASIPEAVQCATACDTDTMAALKQQLDDLRGNLNRAT
>NC_022546.1|WP_010616543.1|2577237_2577831_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MRDSPEEKARRYATQAHADAGQRRKYTDEPYIVHPAAVAELVRSVSDDEAMIAAAWLHDTVEDTASTLQDIEEHFGARVAHLVDMLTDSAQPQAKNRTARKLAHFRHTAEASPEAQTIKLADIIDNTRAIVQFDPNFARVYLVEKQIQIQLLQQGDRRLWQQARHIIEQGIAQLAKPPYSVPESWFVKQAAKYGSLS
>NC_022546.1|WP_010616542.1|2576894_2577191_+|HTH-type-transcriptional-regulator
MEIKDLMVELLSSLEQIVLTRDAQTPVSEIAFNTVSVPEPQRLREMTGMQVDEFARVMGVSVSSVKSWEAQRTRPSATARKLMKLLQANPYLGRQLLE
>NC_022546.1|WP_082231737.1|2576386_2576629_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MARELAQQNAVPLLPGSVWQWLVAEGSDVTAGATVGILESMKMEIPIVAPVSGKIHSLQRQAGQQVQAGQLLMVIDPFAV
>NC_022546.1|WP_082231736.1|2576232_2576469_+|hypothetical-protein
MLAIAAQSGAQALHPGYGFLSEKPEFVTRCESAGLHFLGPDAAQMLAFGLKHRARTGAAERGAAAAGQRVAMAGGRRQ
>NC_022546.1|WP_022548541.1|2576037_2576226_+|urea-carboxylase
MIDRVLIANRGAIAVRIIRTLQAMNIRAIAVYAEADRHARHVRLADEAWSLGEGQVRDTYLN
>NC_022546.1|WP_010616539.1|2572583_2573300_-|DUF3053-domain-containing-protein
MASGISRIWMRSGMLLTGVLLVLQLTACGDKEGDQRKAFTDFLQNTVMRSGEHLPSLSENQKQTFGNYASDYAILYGFSQQVNQAVDQGMRPVVDELAAIRVPQDYLTRRDSLRQASGNLSVLTQQIQSAKMQADSSKATLKQPDDLKKVYDSVYAKVVTQPASTLIPLLPQLQALSQSAVQAGDYLQSQGARVSFNDGGVQFPTQEQATQYNTLMSNLASNTQALTQAQNAVQGGLQ
>NC_022546.1|WP_010616537.1|2570246_2570780_-|MltR-family-transcriptional-regulator
MEEKQAFENRVLERLNAGRSVRSFLIAAVELLAEAVNLLVLQVFRKDDYAVKYAVEPLLLGNGPLGELSVRLKLIYGLGVINRHEYEDCELLLALREELNHDTSDYRFTDDEILGPFGELHCVLAWPPQPDFTRDDAALRAMQQQRYLQMVRSTMVLSLTELISRISHKQAFKKPAV
>NC_022546.1|WP_010616536.1|2569303_2569543_+|cell-division-protein-ZapB
MSFEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLKNEMSQASGNHEALACENQHLKEEQHVWQERLRALLGKMEEV
>NC_022546.1|WP_022548552.1|2582586_2583492_-|MFS-transporter
MKSLLPRPRRLNPVYLSFMAVSFMVGVAGALQAPTLSLFLTREVQVRPFWVGLFFNINAVAGIVISLLMAKRSDNRGDRRHLILFCCLMAVANALLFAFNRHYLTLITLGVLLSALASVEIPQIFALAREYADQSAREVVMFSSVMRAQLSLAWVIGPPLSFALALNYGFVTLSCVAAVIFLLSMLLIWRTLPSVPRIAATPEQVLMQLSPWKDSQVLQLFNAAFIGIIAGIGMLWFQDLMPGRAGAATTMFTTSISTGLIIAGLIQGILSERFGHESVYWLALVMAVVALVLAARVRDAR
>NC_022546.1|WP_051588482.1|2584618_2585260_+|hypothetical-protein
MHWINGTGGTVNGDIMSQGGQITLKGDNSKPFILANADGNVRAYIWKDKGGDGIHINNGIDGGGDYIFHKDGGFRAPSSIYAGAARIAAYVNIYGSMWGNQWLDAYLEKTFQPKGAYGKANTAKLGVNGWFKCGDTGLIIQWARYGKDKREGTYDFPLPMKFPSAGLFCIGYVASAINFHADRQSQSAHLVDNGIVRVTVDNSLETVVLAIGF
>NC_022546.1|WP_022548556.1|2585692_2586748_-|phage-tail-protein
MHRIDTSTAQKDKFGQGKNGFTNGDPTTGTPSTKLNSDICDALQEEVCTVIERAGIRLNKSQHDQLYQAVKQLSEAEANKAKLVLVDGSTVDLNTLNKLAKALGNDAKFSETVINLLNQNGADIPDKNLFIKNLGLTETVDCAKNALDKRTGGTVNGDIMSQGGQITLKGDGRKHLGIHNQDDSVRMWLYKDKGGDGVRLNNGNDGGGDYIFHKDGGFRAPSSIYAGAARIAADGNIYGSMWGNQWLDAYLKKTFQPKGAYGKANTAKLGVNGWFKCGDTGLIIQWGKTDSENFDRKILPLPLPFPNEGLWALGWVAEAIGMGEDLCSHSAGLVDKAHIKVTTDYNWMPPG
>NC_022546.1|WP_010615880.1|2586734_2587325_-|DUF2313-domain-containing-protein
MTNLDDEYTQLLRTLLPPGPAWDEEDPLIKGLAPSLAQAHQHADSLMIEINPAQSVELINRYEKLCGLPDKCLANRTQTLEERQRVLDAKVNTVGGINEAFFKKQLEILGYPTATIEQFQHLDSSPDPTWGDKWRYYWQVNIPAEANVRWISCTSSCNESIRTWGDSAVECVIERQCPSHTQVLFAYTKGENDASN
>NC_022546.1|WP_041387237.1|2588389_2588800_-|phage-GP46-family-protein
MLMNKKVNTALPDQERLKRAVMISLFTWRRSEPDDDTDTQFGWWGDTWPTVQNDRIGSRLHLLKRTTLTHQTAQRAKEYIAQALKWMTEDGVALRVDIEVVRSGIDRLMATVILTLPDHNIKTITINNLWSVIHAK
>NC_022546.1|WP_010615877.1|2588805_2589372_-|phage-baseplate-assembly-protein
MKNAVAMLQRVLLRLWSRVVVRGVNSTLACQQVDISLVAGETKSGMEYLEPYGFTSTAHAGAEGVALFLGGDRSHGVVISVADRRYRIKGLKSGEVAIYTDEGDSIMFKRGRLIEATTDTFIIHAKNKIVLDTQQVETPGKITAAQSIVSQAEVQDKTGSLSTMRAQYNTHDHKGDSGGITGKPNQQM
>NC_022546.1|WP_010615873.1|2590482_2591805_-|DNA-circularization-protein
MSHWKDNLRPASFRGVPFQVEDDEGTFGRRVQVHEYPNRDKPYTEDLGRATRRFTINAYLIGNDFFEDRDRLIVAIDTPGPGTLVHPYYGEIAVCIDGEVRVSHSGRDGRMCRVSFNVVEAGELSFPTAGVATGQTLISSSSALNDRIGETFANVGLKGLPDFAQAGVLARTKSMINNVTKTFDTIDSGITAASRLLHGDISVILKPGSSGKSLVETIQRMWRAGRRTGKDALMLAQQIKTLAGVTLGNDLAPRGVWKSDRPSVRAERRHSNRIAALVRTTAIHEATWRLTQLPPPRTALLPVNQRGKRQIHVNISHPALHAALHKKDSPMERVAAVTWDALVTVRETLNQAIEHEQALTLDDALFLALQQVKTDANRDIATRLAQVEKTVTRTPEAVLPALVLAAKWYDNAARETDITSRNAVNHPGFMPVKPLRVPAR
>NC_022546.1|WP_010615872.1|2593805_2594129_-|phage-tail-assembly-protein
MKSIALSKPIQVHNNKVTVLEIQEPTFDQVEKYGIPFSYSERGDMRLDTRSALSYLPELAGIPRSSAQQMALHDVFLASMTIVSFFTGAQSLAVSDDDSTTLPGSGD
>NC_022546.1|WP_010615871.1|2594125_2594491_-|hypothetical-protein
MTGKRKIGGTCYFKVDGQQLSLNGSVEVPMNTVIREDLMGIDGSVHYKETHRAPYIKAEFKVERRFPIEKLTTADEMTITAELANGMVYVLSGAWLSGESSHNADEGTVEMEFHGDEGFYQ
>NC_022546.1|WP_010615870.1|2594490_2595999_-|tail-sheath-protein
MTISFNTVNANLRVPGFYPEMDNSAANTMQASGPALLIGHALPTAQMTLNSPMIMPSAEMMQQLAGRGSQLHRMVQAYRRIDAIGELFVIAVPAVPETKGTKATGKIAISGTATDSGVVTLYISNQRILSAVKKSDTENTVAAALGKAINDNEDLPVTAAISSGKISLTAKHRGLTGNDIPLMMNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDAASLQKMSAAMNDTNGRWSPYQRLYGHVYTAKKAMVGELVAFGDTLNDPHLTIAGYEPAIQTALDELVAARLARCAIFLRNDPARPTHTGELNGVLPAPSGKRFTLAEQQSLLSHCIATAIVEGGVLRIQRDVTTYQKNSYGVADNSYLDSETLYTSAYVLRRLKSVITSKYGRQKLASDGTRFGAGQAIVTPAVIKGELCAVYRQLEREGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQLRVFALANQFRLQYNQGEVV

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Crispr_ID: NC_022546_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022546_4

3330276-3330372

Orphan

Consensus_repeat	Method
CGCACCATCAGCCCCCTCTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022546_4

>merge|NC_022546|4|3330276-3330372|CRISPRCasFinder
CGCACCATCAGCCCCCTCTCCCGCTAATGACACATGGATGCACCATCAACCCCTCCCGCCAGCGATAAAGGGACGCACAATCAGCCCCCTCTCCCGC

>NC_022546|4|4|3330276-3330372|CRISPRCasFinder
CGCACCATCAGCCCCCTCTCCCGC	TAATGACACATGGATGCACCATCAACCCCTCCCGCCAGCGATAAAGGGA
CGCACAATCAGCCCCCTCTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_022546.1\|WP_041387313.1\|3355749_3356046_-\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_022549035.1\|3355504_3355744_-\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010615568.1\|3326923_3327847_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NC_022546.1\|WP_082231747.1\|3352079_3352367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182445
NC_022546.1\|WP_010615567.1\|3325743_3326913_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_022546.1\|WP_010618159.1\|3336621_3337527_-\|flagellin-like-protein	unknown	unknown	gnl\|CDD\|236140
NC_022546.1\|WP_010615559.1\|3320172_3320883_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NC_022546.1\|WP_010615569.1\|3329384_3330269_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_022546.1\|WP_010615562.1\|3322566_3323937_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_022546.1\|WP_010618155.1\|3350780_3351896_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236614
NC_022546.1\|WP_010615566.1\|3325316_3325616_-\|toxin-RelE	unknown	unknown	gnl\|CDD\|227028
NC_022546.1\|WP_010618157.1\|3348274_3348472_+\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_006777722.1\|3319575_3320166_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NC_022546.1\|WP_041387309.1\|3350031_3350694_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_022546.1\|WP_010615565.1\|3325030_3325330_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_022546.1\|WP_010618143.1\|3356236_3356422_+\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_004115572.1\|3319330_3319579_-\|hypothetical-protein	unknown	unknown	unknown
NC_022546.1\|WP_010615572.1\|3332551_3333433_+\|glutathione-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|183298
NC_022546.1\|WP_010618140.1\|3358331_3358646_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NC_022546.1\|WP_022549004.1\|3323929_3324805_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NC_022546.1\|WP_010615568.1\|3326923_3327847_-\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	6.9745e-47
NC_022546.1\|WP_082231747.1\|3352079_3352367_+\|hypothetical-protein	gnl\|CDD\|182445	PRK10420, PRK10420, L-lactate permease; Provisional.	2.41083e-24
NC_022546.1\|WP_010615567.1\|3325743_3326913_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.82372e-57
NC_022546.1\|WP_010618159.1\|3336621_3337527_-\|flagellin-like-protein	gnl\|CDD\|236140	PRK08026, PRK08026, FliC/FljB family flagellin.	9.41581e-29
NC_022546.1\|WP_010615569.1\|3329384_3330269_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.39236e-40
NC_022546.1\|WP_010615562.1\|3322566_3323937_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_022546.1\|WP_010618155.1\|3350780_3351896_+\|MFS-transporter	gnl\|CDD\|236614	PRK09705, cynX, putative cyanate transporter; Provisional.	7.81716e-90
NC_022546.1\|WP_010615566.1\|3325316_3325616_-\|toxin-RelE	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	7.87461e-36
NC_022546.1\|WP_006777722.1\|3319575_3320166_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.79678e-77
NC_022546.1\|WP_041387309.1\|3350031_3350694_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.62729e-30
NC_022546.1\|WP_010615565.1\|3325030_3325330_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.28466e-09
NC_022546.1\|WP_010615559.1\|3320172_3320883_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	6.45048e-10
NC_022546.1\|WP_010615572.1\|3332551_3333433_+\|glutathione-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
NC_022546.1\|WP_010618140.1\|3358331_3358646_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	2.08347e-36
NC_022546.1\|WP_022549004.1\|3323929_3324805_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.11023e-21

>NC_022546.1|WP_010615569.1|3329384_3330269_+|sugar-phosphate-isomerase/epimerase
MKIAFDVDVIRDLGITRMVHQVAEWGYKYIEQSPHPQINPFYKHPKASREIMREYKNALNATGLEISSFITVYRWSGPDELRRQAAVKNWKRMIEIAVEMGVQVINTELSGNPNEPEICEEMFYRSMDELLPIFERKGIRLEIQAHPWDFCEESNETADIVKSFRSDNVKYIYSAPHTFYYDKGKGDVKSMLHYAGDDLSHMLIADTMNHTKHCRYIVNPPGVDATIHQHVAVGEGEVNFDALFEALREMDFANRHYKVGGESIISAALFGYPEKMKYQAVETRELIERELLNL
>NC_022546.1|WP_010615568.1|3326923_3327847_-|TIM-barrel-protein
MTLHIANAPCSWGVDDPDNPFLPPWQTVLREAAQAGYRSIELGPWRYLPTDAAELRQQLEAHQLSLVAGTIFDYLVSEANFPAMVELTHNICRNLSQVPCAARTHGDNRPTPYLVIIDFGNPQRAQFAGQTEKAPRLAPADWQRMMQHITQLSHIAWHDYGVRPVIHPHAGGCIEFADELEQLVQDIPHEVAGLCLDTGHLFYSSMDPQTWLQRYWSRIDYLHFKDINAAVWRDVIARGVDFFTACAEGVMCPLGQGAIDYPALRAFLAERHYQGWITIEQERDPRNAGTSLQDVTASLHYLHSIGF
>NC_022546.1|WP_010615567.1|3325743_3326913_-|Gfo/Idh/MocA-family-oxidoreductase
MINGSKVLDRALRWGMVGGGGTSQIGYIHRSAALRDGNFTLVAGAFDIDAARGQAFGRALGVAAERCYSDYETLFKAEAARADGIEAVSIATPNNTHFAICRAALSAGLHVVCEKPLCFTSAEAEELQQLCRAQQKIIGVTYGYAGHQLIQQACAMIADGLLGEIRIVNMQFAHGFHHEAVELQNASTRWRVDPRFVGPSYVLGDLATHPLFIAETLLPQLQIKRLLCSRQSFVASRAPLEDNAFVMMEYDNGAVGTLWASAVNCGSMHGQKIRVVGARASLEWWDEQPNQLRYEVQGEPVQILERGMGYLHASALADDRIGGGHPEGLFEAWSNLYRRFALAMDATDRGDHAFLKDFWYPDVHAGLMGVRWVEQCVKSADAGAVWVEC
>NC_022546.1|WP_010615566.1|3325316_3325616_-|toxin-RelE
MIEDVLASLAVLREFGPTLGRPDVDTLVGSRFSNMKELRVQSNGRAIRAFFAFDPVRRAIVLCAGNKTGTHQRRFYQAMIKLADREYQQHLEEMNHAKT
>NC_022546.1|WP_010615565.1|3325030_3325330_-|helix-turn-helix-transcriptional-regulator
MPKLEDLIAQRSPESQARIRNKAAEKILEIRLRQLREELALSQVQLAEKMGVSQPAIAAIEARGDELKLSSLKKYVEALGGKLSVTVELPAGDGRIFQL
>NC_022546.1|WP_022549004.1|3323929_3324805_-|ParA-family-protein
MTILPVISPKGGEGKSTFAAYLAGFLADAGLNTLLVDADYSQPTASSIFALEHESPCGLYELLMQMVSDHTQCISQTAIKNLDVIYSNDPDELLPTAMLHAADGRLRLRNILQHPFFNRYDVIIVDSKGATGVMTELSLLSSTGNVMGVVKPILPDVREFIRGSLHMLTRLKTYENYGIRLPDISILVNCIENTLLDREAMDGLAAIINEKHYDASALGNRDVYRLLDTRIEALDIFKLGHVKQQPVHRLEYKTRRKGPAAAVTMHDLACELFPEWQSHFSDVLTREVRHV
>NC_022546.1|WP_010615562.1|3322566_3323937_-|replicative-DNA-helicase
MSEMMMPCSYEAEQAVLGGLMLDNDRWDEVILQISPEDFFSRPHRMVFRVMAELAGEGLPLDLITITERLENRGDLEQCGGFAYLAEMSKNTPSAANILAYAGVVAEKSRLRQLMTVGNSLLSDVQAPKASSAGILESAEGKLLNIAEQGAMQLNSETGVNEALDKLLTHLESMSGSDGLTGTPTGFSELDAMTCGLQPGDLALLAARPSMGKTSLAMAACTAAVGAKPDDHVFVFSLEMPSEQLMMRLLAMEGRVELSRLRSGNMDDEDWARVSAATGRIIEWKNRLIIDDTSYQTPATLRARARRYVRKYGRPSLIMLDYLQLVRSPEQENRTQEIAEISRSLKALGKELGCPVLALSQLNRLVEQRTDKRPNNGDLRDSGALEQDADLIMFIYRDEVYNPGTPDAGVAEIIVGKQRQGPTGTVKVKFDGRYTLFSEFQEGSYDFGYRSGRKQA
>NC_022546.1|WP_010615559.1|3320172_3320883_-|DUF2786-domain-containing-protein
MNNSQRQLRLLNLVRKLLKLGRSNTNAHEAGLALQRAQKLMARYGISELDAGLTSVREASSRTAPSDAEKVPEWMVTLVWGVCHVFGCRAYYSWRQTSAGYRRSVTFYGFSEKPEIAAYAFDVLTRQLKDATNSYLKTQSKRLKLATRRARAEQFRDGWVCGVREVISATDISSEEQQVMSHWLESRSMKTVTTRELKACRGADTARYQGYEAGQNARLHQGVSGRGPAAIGYRQD
>NC_022546.1|WP_006777722.1|3319575_3320166_-|DUF2857-domain-containing-protein
MMNSLSQAANGLLMQLVMDLRSGYLRRCESLGLNREEMQMLQGLSLEELHYLSGSEVSIISVGINHGNLVRMLQQARTEQKRLQRIDRALALGGSIELMANYFGLSSTDVAARRRIAGIDVRPGRGNALGDEENAALWRQWQKSGVEDAESADGLDVMMLAAEQMNVSLTSVWHAVRGWHKTRQPSPARTPVRKTA
>NC_022546.1|WP_004115572.1|3319330_3319579_-|hypothetical-protein
MKYRMVAPGLRAPHGTPPQCCQKALRQVRRFRQGARNYTRLDEKGCGYYKIDLGPFWRLLSRNEGRTWLLLSHERYNSAIRK
>NC_022546.1|WP_010615572.1|3332551_3333433_+|glutathione-dependent-disulfide-bond-oxidoreductase
MSENQYQPAKVWTWDPEAKGNGAKTNRPTAGPTHEQTLPVGKHPLQLYSLGTPNGQKVTILLEELLALGVQEAEYDAWLIRIGDGDQFSSGFVEVNPNSIIPALRDHSITPPLRVFESGNILLYLADKFGHFIPSDVAGRTETLNWLFWLQGSAPYLGGCFGHFYHYAPEKIEYAINRFTLEAKRQLDVLDRQLADHRFLAGDEYTIADIATWPWYGNLVLNNQYGGGEFLDVQSYKNVVRWAKEIADRPAVIRGRKVNREFGAEPQAPLLERHDASDFDTNTEDKRQARGEQ
>NC_022546.1|WP_010618159.1|3336621_3337527_-|flagellin-like-protein
MTSGAAKSDSNFATLPTTVTDTPAIDTSTASLSFSNASGNAVSNGRLLRTSGGQYVMEVDNGGGNYQYYNAAVSATSDGTSNALSIVVTSASSINSFSAVNSVTGTSYITLDPANVDVRYTDVDGNSSNDVLKLDADGNYYMDVPNGNLDKTATFVRSDSSGNLMLKTLQGVGDVQIYFQAALSSVTDASTNFTTLRVAETGSEIRLKHPDDPLATLDRAIGQIDSQRTRLGAVANRLLSAQTLQGNATAAIAASRSRIEDADYATEVSSLSRQQILQQASSALLAQANQLPQQVLKLLNA
>NC_022546.1|WP_010618157.1|3348274_3348472_+|hypothetical-protein
MSHYVQGQNEDVLKIVGRAVLTLHLHGETLSSDKVSSMIACYAEEEPVNDDEHQRLYALAIQMLS
>NC_022546.1|WP_041387309.1|3350031_3350694_-|LysR-family-transcriptional-regulator
MNRQPMFTPQQLLSFVAVCETASFTRAAERVHLSQSTVSQQVRRLEEMVGKALLQRTSHQVALTEEGEKLLGYARRIIALNGEAHDVLSDKWRDGIVRIGMPEDFAAPTASLLAGFSRQHPQLRLDVMSGMYVDLHRAWQREELDLMLIKQPGGDRPLAARPEPLLWLDSAEHPCFDQTPLSLVVFPQQGLYREEMCQTLDALQQALAAALVQFCQLQWQ
>NC_022546.1|WP_010618155.1|3350780_3351896_+|MFS-transporter
MNRHANTLTLAALVLAGLNMRPLLTSVSPLLSQLRHSLHLSGLAASLLPAVPMVMMGAVALFSATLMQRVALKPLLLAGLTLLLLAARGVIDSGSGLVLSALFAGIGVGVVQMAMPGLIRQRFSRRSAAVTRLWAGAQLGVPLALSSWALPVLLAILLWLLVRVPAAPDAAQVTLPPLWRKPRAWSLALSFGLVNGGYATCVAWLPDAYHRLGWSAQAGGSLLGVMILSQVAGALLMPLLARRADRRPQLIVNLLCQLAGMSGFLFAPLLAPWLWAAIAGFGLGAAFPLAMVLALDHLPQPQAGARLVAFMQGAGFIIAGCMPFIAGQLQVLTHSFVSVWLMQGIVTLGLIGLNLRFHPRSYARAFSAAAR
>NC_022546.1|WP_082231747.1|3352079_3352367_+|hypothetical-protein
MPMRRIPLVTSGETACRCGNKTTIRSTICGYPAWWRFPIVFFFFALIKLKLKGYQAGTITVVLALLVALLLYGMPVPQSLASVAYGFLYGLWPIA
>NC_022546.1|WP_022549035.1|3355504_3355744_-|hypothetical-protein
MKKTRPRRPNGRWVYYILYDGILWPCPMRWEWESGFGGWLPFYYSPTFEFVAGDPRKAYRIARSSVRNLRQHEHDGEYA
>NC_022546.1|WP_041387313.1|3355749_3356046_-|hypothetical-protein
MVQKESAMLIGFVLLVSACGHDACDALPVSERIYPTKVACEQMADRIHKVRPNVVLLCGKCTVNSMPVRHQLHKKQPDGIATWTRSVQNISCFTLLQL
>NC_022546.1|WP_010618143.1|3356236_3356422_+|hypothetical-protein
MSHEIAHPASSPKQAALQLVIELVRAGKLSPLHGDASNMISIYEQFKAHFEADKQKGSAIS
>NC_022546.1|WP_010618140.1|3358331_3358646_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MEIDESTVMELIIQAGEARSCSMEALRAARRKEWPRADALLSEASEAARAAHRIQTELIGADEGCGKIPVNLIMVHAQDHLMNAMLCRELAEEIIQLRRELAAD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_022546_1	1.1\|1143984\|37\|NC_022546\|CRISPRCasFinder	1143984-1144020	37	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	650658-650694	12	0.676

1. spacer 1.1|1143984|37|NC_022546|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.676

attcacctggtgagcatgaatgcgcaccctgcgttgt	CRISPR spacer
ttcgacctggtgcgcatcaatgcgcaccctaaaaaag	Protospacer
 *. ******** **** ************. .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

484055 : 490649

Burkholderia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022547321.1\|484055_484376_+	hypothetical protein	A0A0S4L7B4	Pseudomonas_phage	1.0e-09	42.5
WP_022547322.1\|484388_485339_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.4
WP_010617116.1\|486818_487973_+	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-111	55.2
WP_010617117.1\|487984_488287_+	hypothetical protein	NA	NA	NA	NA
WP_010617118.1\|488289_488520_+	hypothetical protein	NA	NA	NA	NA
WP_010617119.1\|488552_489083_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.6e-42	51.4
WP_022547325.1\|489246_489480_+	hypothetical protein	NA	NA	NA	NA
WP_022547326.1\|489496_489676_+	hypothetical protein	NA	NA	NA	NA
WP_010617106.1\|489813_490236_+	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.3e-09	35.2
WP_051588467.1\|490229_490649_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-29	51.7

DBSCAN-SWA_2

563157 : 571055

Escherichia_phage(33.33%)

terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022547392.1\|563157_564474_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	9.8e-147	63.7
WP_082231703.1\|566786_567488_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.8e-45	46.2
WP_082231755.1\|568140_568614_+	hypothetical protein	A4JWL8	Burkholderia_virus	3.1e-18	38.2
WP_022547402.1\|568697_569291_+	hypothetical protein	Q37842	Escherichia_phage	3.0e-18	46.8
WP_082231704.1\|569980_570349_-	hypothetical protein	Q37842	Escherichia_phage	9.2e-18	49.5
WP_022547405.1\|570464_571055_+	recombinase family protein	A0A0C4UR34	Shigella_phage	8.8e-63	66.3

DBSCAN-SWA_3

863173 : 941814

Burkholderia_virus(36.36%)

tail,plate,protease,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010618783.1\|863173_863944_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_010618782.1\|863955_865278_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_041387086.1\|865258_865987_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_010618780.1\|865983_870450_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_022547570.1\|870605_872438_+	L,D-transpeptidase	NA	NA	NA	NA
WP_010618778.1\|872626_873178_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	6.4e-07	34.7
WP_010618777.1\|873214_873844_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010618776.1\|873876_875067_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_010618775.1\|875267_876380_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-105	54.6
WP_010618774.1\|876681_878082_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.1e-79	36.6
WP_022547571.1\|878237_879458_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_022547572.1\|879689_882305_+	aminopeptidase N	NA	NA	NA	NA
WP_010618037.1\|883566_884358_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-27	35.1
WP_010618034.1\|885156_885735_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_041387088.1\|885746_886733_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010618032.1\|886716_887271_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_010618031.1\|888025_888433_+	hypothetical protein	NA	NA	NA	NA
WP_022547579.1\|888439_888799_+	hypothetical protein	NA	NA	NA	NA
WP_010618025.1\|891539_892550_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_010618024.1\|892700_893243_+	cell division protein ZapC	NA	NA	NA	NA
WP_010618023.1\|894452_896570_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_010618022.1\|896575_898483_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.3e-50	27.9
WP_022547584.1\|898499_899783_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_010616568.1\|899754_901398_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_010616567.1\|901394_901961_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_013508548.1\|902228_902396_+	ribosome modulation factor	NA	NA	NA	NA
WP_010616565.1\|902460_902979_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_041387091.1\|904890_905430_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_010616563.1\|905499_906570_-	porin OmpA	NA	NA	NA	NA
WP_041387093.1\|906918_907410_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_010616560.1\|908220_910359_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_010616559.1\|910367_910811_-	YccF domain-containing protein	NA	NA	NA	NA
WP_082231709.1\|910934_913037_+	DNA helicase IV	A0A1P8CWU5	Bacillus_phage	1.4e-09	23.8
WP_010616556.1\|913473_914070_-	DUF2057 family protein	NA	NA	NA	NA
WP_010616555.1\|914244_914658_+	CoA-binding protein	NA	NA	NA	NA
WP_010616553.1\|916336_916597_+	acylphosphatase	NA	NA	NA	NA
WP_010616552.1\|916597_916924_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_010616551.1\|917023_917680_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.4e-48	52.8
WP_010616550.1\|921365_921548_-	hypothetical protein	NA	NA	NA	NA
WP_010616549.1\|921568_922168_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_022547601.1\|924346_925801_+	DUF935 family protein	A4JWJ5	Burkholderia_virus	9.3e-130	52.2
WP_010615546.1\|925787_926615_+\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.9e-95	61.3
WP_010615545.1\|926611_927064_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	4.9e-21	37.4
WP_010615544.1\|927304_928423_+	peptidase	A4JWJ9	Burkholderia_virus	5.9e-76	43.6
WP_010615543.1\|928432_929371_+	hypothetical protein	A4JWK0	Burkholderia_virus	7.0e-62	42.9
WP_010615542.1\|929374_929728_+	DUF2190 family protein	NA	NA	NA	NA
WP_010615541.1\|929727_930189_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	5.9e-30	48.1
WP_010615539.1\|930653_930944_+	hypothetical protein	Q6QIB1	Burkholderia_phage	4.2e-10	59.6
WP_010615538.1\|932368_932608_+	hypothetical protein	NA	NA	NA	NA
WP_010615537.1\|932604_933129_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	67.2
WP_010615536.1\|933252_933525_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010615534.1\|934006_936439_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.8e-98	33.5
WP_010615533.1\|936371_937331_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	2.1e-37	39.4
WP_010615532.1\|937330_937558_+	membrane protein	NA	NA	NA	NA
WP_010615528.1\|938730_939372_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.2e-27	43.2
WP_010615527.1\|939434_939794_+\|plate	baseplate protein	A4JWL5	Burkholderia_virus	1.7e-29	56.4
WP_010615526.1\|939784_940888_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.1e-87	49.2
WP_022547605.1\|940880_941468_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	4.7e-56	60.8
WP_022547606.1\|941469_941814_+\|tail	tail fiber protein	A4JWL8	Burkholderia_virus	2.9e-10	49.3

DBSCAN-SWA_4

1358368 : 1498314

104

Burkholderia_phage(29.41%)

tail,integrase,plate,protease,head,terminase,transposase,tRNA

attL 1426601:1426622|attR 1468455:1468476

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010618435.1\|1358368_1359175_+\|protease	serine protease	NA	NA	NA	NA
WP_010618432.1\|1363891_1364212_-	YdbL family protein	NA	NA	NA	NA
WP_010618431.1\|1364223_1364412_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_010618430.1\|1364408_1367027_-	YdbH family protein	NA	NA	NA	NA
WP_010618429.1\|1367192_1368185_+	2-hydroxyacid dehydrogenase	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	1.0e-63	44.1
WP_022547870.1\|1368200_1368473_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_010618426.1\|1369388_1369589_-	DUF2767 family protein	NA	NA	NA	NA
WP_010618425.1\|1369735_1370101_-	anti-adapter protein IraP	NA	NA	NA	NA
WP_010618424.1\|1370426_1371362_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.4e-131	89.1
WP_010618422.1\|1374596_1375310_+	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_010618832.1\|1379857_1380379_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010618830.1\|1381646_1383338_-	TolC family protein	NA	NA	NA	NA
WP_010618828.1\|1384589_1386776_-	type I secretion system permease/ATPase	F2Y2R6	Organic_Lake_phycodnavirus	5.5e-25	33.5
WP_041387134.1\|1386772_1386997_-	hypothetical protein	NA	NA	NA	NA
WP_010618827.1\|1387045_1388140_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_041387526.1\|1391374_1391902_-	carbonic anhydrase	NA	NA	NA	NA
WP_010618825.1\|1392482_1393292_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_010618824.1\|1393401_1394112_+	polyphenol oxidase family protein	NA	NA	NA	NA
WP_010618823.1\|1394143_1395463_-	fructuronate transporter	NA	NA	NA	NA
WP_010618822.1\|1395541_1396306_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_010618820.1\|1397516_1398218_-	response regulator transcription factor	NA	NA	NA	NA
WP_010618814.1\|1402504_1403116_+	response regulator transcription factor	NA	NA	NA	NA
WP_010618812.1\|1405471_1405972_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_010618811.1\|1407187_1408174_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_010618810.1\|1408427_1409399_+	TerC family protein	A0A291LBC5	Escherichia_phage	4.1e-33	35.2
WP_041387136.1\|1409647_1410868_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_022547898.1\|1413520_1413952_+	FCD domain-containing protein	NA	NA	NA	NA
WP_041387138.1\|1413997_1414210_-	hypothetical protein	NA	NA	NA	NA
WP_010618806.1\|1414288_1414963_+	DedA family protein	NA	NA	NA	NA
WP_022547899.1\|1414962_1415331_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_041387140.1\|1415914_1416220_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_010618801.1\|1416221_1416617_+	membrane protein	NA	NA	NA	NA
WP_010618800.1\|1416613_1416898_+	membrane protein	NA	NA	NA	NA
WP_010618799.1\|1417105_1417516_+	DoxX family protein	NA	NA	NA	NA
WP_010618798.1\|1418643_1418973_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_010618797.1\|1418959_1419310_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_041387142.1\|1421216_1423262_+	penicillin-binding protein activator	NA	NA	NA	NA
WP_010617899.1\|1423219_1423615_+	YraN family protein	NA	NA	NA	NA
WP_010617898.1\|1423629_1424217_+	DnaA initiator-associating protein DiaA	NA	NA	NA	NA
WP_010617897.1\|1424231_1424804_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA
1426601:1426622	attL	NA	NA	NA	NA
WP_010616212.1\|1428692_1429430_-	KDGP aldolase family protein	NA	NA	NA	NA
WP_010616213.1\|1430529_1431663_-	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_010616214.1\|1431755_1432403_-	DUF4310 family protein	NA	NA	NA	NA
WP_022547920.1\|1434874_1435483_+\|tail	tail fiber assembly protein	Q2A0A8	Sodalis_phage	2.4e-31	44.2
WP_082231717.1\|1435399_1436578_-	hypothetical protein	Q37842	Escherichia_phage	1.6e-34	41.4
WP_022547605.1\|1436546_1437134_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	4.7e-56	60.8
WP_010615526.1\|1437126_1438230_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.1e-87	49.2
WP_010615527.1\|1438220_1438580_-\|plate	baseplate protein	A4JWL5	Burkholderia_virus	1.7e-29	56.4
WP_010615528.1\|1438642_1439284_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.2e-27	43.2
WP_010615532.1\|1440456_1440684_-	membrane protein	NA	NA	NA	NA
WP_010615533.1\|1440683_1441643_-\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	2.1e-37	39.4
WP_010615534.1\|1441575_1444008_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.8e-98	33.5
WP_010615536.1\|1444489_1444762_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010615537.1\|1444885_1445410_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	67.2
WP_010615538.1\|1445406_1445646_-	hypothetical protein	NA	NA	NA	NA
WP_010615539.1\|1447070_1447361_-	hypothetical protein	Q6QIB1	Burkholderia_phage	4.2e-10	59.6
WP_010615541.1\|1447825_1448287_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	5.9e-30	48.1
WP_010615542.1\|1448286_1448640_-	DUF2190 family protein	NA	NA	NA	NA
WP_010615543.1\|1448643_1449582_-	hypothetical protein	A4JWK0	Burkholderia_virus	7.0e-62	42.9
WP_010615544.1\|1449591_1450710_-	peptidase	A4JWJ9	Burkholderia_virus	5.9e-76	43.6
WP_010615545.1\|1450950_1451403_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	4.9e-21	37.4
WP_010615546.1\|1451399_1452227_-\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.9e-95	61.3
WP_022547922.1\|1452213_1453701_-	DUF935 family protein	A4JWJ5	Burkholderia_virus	2.5e-138	51.3
WP_022547923.1\|1453700_1455017_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	2.3e-148	62.1
WP_022547924.1\|1455013_1455565_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	4.4e-40	47.3
WP_022547318.1\|1455567_1456209_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	2.1e-46	60.2
WP_022547321.1\|1456760_1457081_+	hypothetical protein	A0A0S4L7B4	Pseudomonas_phage	1.0e-09	42.5
WP_022547322.1\|1457093_1458044_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.4
WP_022547925.1\|1458043_1459585_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	8.7e-102	50.1
WP_010617116.1\|1459517_1460672_+	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-111	55.2
WP_010617117.1\|1460683_1460986_+	hypothetical protein	NA	NA	NA	NA
WP_010617118.1\|1460988_1461219_+	hypothetical protein	NA	NA	NA	NA
WP_010617119.1\|1461251_1461782_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.6e-42	51.4
WP_022547325.1\|1461945_1462179_+	hypothetical protein	NA	NA	NA	NA
WP_022547326.1\|1462195_1462375_+	hypothetical protein	NA	NA	NA	NA
WP_010617106.1\|1462512_1462935_+	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.3e-09	35.2
WP_010617107.1\|1462928_1463303_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.1e-29	51.7
WP_082231759.1\|1463447_1463660_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_010617108.1\|1464234_1464507_+	hypothetical protein	NA	NA	NA	NA
WP_010617109.1\|1464928_1465252_-	hypothetical protein	NA	NA	NA	NA
WP_010617110.1\|1465271_1465610_-	glycine dehydrogenase	NA	NA	NA	NA
WP_010617111.1\|1465873_1466260_-	cytochrome b562	NA	NA	NA	NA
WP_022547927.1\|1466332_1467673_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_010617112.1\|1467788_1468331_+	ribosome-associated protein	NA	NA	NA	NA
WP_010617113.1\|1468710_1470066_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
1468455:1468476	attR	NA	NA	NA	NA
WP_010617114.1\|1470234_1471242_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	6.3e-69	42.7
WP_010616793.1\|1475086_1476052_-	glucokinase	NA	NA	NA	NA
WP_010616792.1\|1477933_1478923_+	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_010616791.1\|1479080_1479350_+	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_022547935.1\|1481013_1482204_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_010616789.1\|1482396_1483482_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_010616787.1\|1484512_1484734_+	hypothetical protein	NA	NA	NA	NA
WP_010616786.1\|1484751_1485540_+	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_010616785.1\|1485651_1486005_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010616784.1\|1486088_1487510_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_082231718.1\|1488113_1488317_+	hypothetical protein	NA	NA	NA	NA
WP_022537112.1\|1488285_1489128_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.3e-103	86.9
WP_041387145.1\|1489270_1490347_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_041387147.1\|1490346_1491447_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_022547938.1\|1491713_1493225_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.2e-44	36.7
WP_010615957.1\|1493409_1493868_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_010615958.1\|1493873_1496729_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.4e-142	37.1
WP_010615959.1\|1496795_1497299_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010615960.1\|1497552_1498314_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA

DBSCAN-SWA_5

2453005 : 2506917

Shigella_phage(36.36%)

tail,integrase,plate,protease,head

attL 2466941:2466955|attR 2507955:2507969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022547322.1\|2453005_2453956_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.4
WP_022547321.1\|2453968_2454289_-	hypothetical protein	A0A0S4L7B4	Pseudomonas_phage	1.0e-09	42.5
WP_022547386.1\|2456630_2456924_+	hypothetical protein	Q6QIC8	Burkholderia_phage	8.9e-16	54.9
WP_022547387.1\|2456920_2457565_+	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	7.1e-58	56.9
WP_051588469.1\|2457593_2458040_+	hypothetical protein	NA	NA	NA	NA
WP_022547389.1\|2458178_2458502_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.3e-12	41.8
WP_022547390.1\|2458504_2458816_+	hypothetical protein	NA	NA	NA	NA
WP_022548467.1\|2458818_2459334_+	DUF3486 family protein	Q6QIC2	Burkholderia_phage	7.8e-31	48.6
WP_022548471.1\|2462130_2462964_+	hypothetical protein	A4JWJ6	Burkholderia_virus	2.8e-86	57.5
WP_082231703.1\|2462994_2463696_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.8e-45	46.2
WP_022548472.1\|2463685_2464228_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-35	46.8
WP_082231763.1\|2464275_2464770_+	hypothetical protein	A4JWL8	Burkholderia_virus	3.2e-18	38.9
WP_022548474.1\|2464843_2465434_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
2466941:2466955	attL	NA	NA	NA	NA
WP_010618236.1\|2471744_2472362_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	3.9e-61	56.9
WP_072216166.1\|2472623_2473502_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_010618234.1\|2474021_2475356_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	1.3e-45	30.3
WP_010618233.1\|2475367_2475898_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_022548487.1\|2476040_2476880_-	cell division protein FtsN	NA	NA	NA	NA
WP_010618231.1\|2477033_2478071_-	DNA-binding transcriptional regulator CytR	C6ZCU4	Enterobacteria_phage	2.3e-29	30.7
WP_010618230.1\|2478237_2480436_-	primosomal protein N'	NA	NA	NA	NA
WP_010618228.1\|2480712_2480928_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_007885403.1\|2481004_2481322_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_010618227.1\|2481601_2482750_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_070206098.1\|2484338_2484962_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	4.8e-35	51.5
WP_041387605.1\|2485119_2485368_+	DNA-binding protein	A0A2D1GNH1	Pseudomonas_phage	1.0e-33	82.9
WP_010618224.1\|2488486_2488699_+	hypothetical protein	NA	NA	NA	NA
WP_010618223.1\|2488691_2489108_+	hypothetical protein	NA	NA	NA	NA
WP_010618221.1\|2489417_2490044_+	DUF3164 family protein	M4MHH7	Vibrio_phage	1.7e-56	53.6
WP_010618220.1\|2490122_2490626_+	hypothetical protein	NA	NA	NA	NA
WP_010618219.1\|2490622_2491078_+	hypothetical protein	NA	NA	NA	NA
WP_010618218.1\|2491080_2491422_+	hypothetical protein	I3PV00	Vibrio_phage	3.4e-19	48.1
WP_010618217.1\|2491445_2491823_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	6.3e-22	49.1
WP_010618215.1\|2492212_2492446_+	hypothetical protein	NA	NA	NA	NA
WP_010618214.1\|2492442_2492871_+\|integrase	integrase	A0A0C4UQZ9	Shigella_phage	5.1e-28	48.2
WP_010618213.1\|2492992_2493577_+	lysozyme	B6SD42	Bacteriophage	9.7e-38	52.0
WP_051588514.1\|2493840_2494032_+	hypothetical protein	NA	NA	NA	NA
WP_022548499.1\|2494035_2494191_+	hypothetical protein	NA	NA	NA	NA
WP_010618208.1\|2494484_2494775_+	hypothetical protein	A0A0C4UR00	Shigella_phage	4.7e-25	63.5
WP_010618207.1\|2494785_2495367_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.8e-55	62.2
WP_022548500.1\|2495406_2497074_+	hypothetical protein	A0A0C4UR29	Shigella_phage	1.4e-222	71.2
WP_010616780.1\|2498599_2499931_+\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	2.0e-147	58.3
WP_010616781.1\|2500052_2500529_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	2.8e-35	50.0
WP_022548505.1\|2501917_2502679_+\|head	phage major head subunit	A0A0C4UQR9	Shigella_phage	8.1e-85	60.1
WP_022548474.1\|2502742_2503333_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
WP_022548506.1\|2503518_2503710_+	hypothetical protein	Q37842	Escherichia_phage	1.1e-11	60.8
WP_082231735.1\|2503706_2504090_+	hypothetical protein	NA	NA	NA	NA
WP_022548508.1\|2503996_2504506_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.6e-28	49.3
WP_022548509.1\|2504508_2505078_-	hypothetical protein	Q37842	Escherichia_phage	2.0e-16	53.3
WP_041387230.1\|2505263_2505854_+	recombinase family protein	A0A0C4UR34	Shigella_phage	4.7e-64	67.4
WP_082231764.1\|2506040_2506253_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010618735.1\|2506197_2506917_+	hypothetical protein	A0A0C4UQZ7	Shigella_phage	1.9e-99	78.2
2507955:2507969	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2522818 : 2625169

Salmonella_phage(15.0%)

tail,capsid,lysis,plate,holin,protease,head,terminase,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022548516.1\|2522818_2523922_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_022537112.1\|2525983_2526826_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.3e-103	86.9
WP_010616491.1\|2527226_2527823_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_022548519.1\|2527938_2528397_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	7.3e-49	60.1
WP_010616494.1\|2530692_2530929_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_010616495.1\|2530940_2531108_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_010616496.1\|2531178_2531988_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	2.5e-23	29.8
WP_010616497.1\|2531988_2532474_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.4e-26	43.3
WP_010616498.1\|2532470_2533247_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010616499.1\|2533250_2534525_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_010616500.1\|2534610_2535744_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010616501.1\|2535736_2536813_-	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
WP_072216140.1\|2536886_2537888_-	glycosyltransferase	NA	NA	NA	NA
WP_010616505.1\|2541450_2542419_-	lipopolysaccharide heptosyltransferase RfaC	NA	NA	NA	NA
WP_010616506.1\|2542421_2543465_-	ADP-heptose--LPS heptosyltransferase RfaF	NA	NA	NA	NA
WP_010616507.1\|2543482_2544415_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	5.5e-35	36.3
WP_010616513.1\|2545843_2546857_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	2.3e-18	78.8
WP_010616514.1\|2546887_2547799_-	hypothetical protein	NA	NA	NA	NA
WP_010616515.1\|2547791_2549021_-	glycosyltransferase	NA	NA	NA	NA
WP_010616516.1\|2549088_2549994_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_010616517.1\|2551517_2551949_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_010616518.1\|2551968_2552223_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	5.0e-15	52.1
WP_010616519.1\|2552263_2552728_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_010616520.1\|2552727_2553747_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010616523.1\|2554637_2555066_-	hypothetical protein	NA	NA	NA	NA
WP_041387233.1\|2555101_2556478_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	26.4
WP_010616525.1\|2556474_2557173_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	6.2e-07	29.4
WP_010616526.1\|2557323_2557836_+	repressor CpxP	NA	NA	NA	NA
WP_010616527.1\|2558030_2558849_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_010616528.1\|2559139_2560102_+	6-phosphofructokinase	NA	NA	NA	NA
WP_010616529.1\|2561367_2562123_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_031279624.1\|2562191_2562959_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_010616531.1\|2563080_2563671_-	YiiQ family protein	NA	NA	NA	NA
WP_010616532.1\|2563776_2564523_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_010616533.1\|2565392_2566403_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_010616534.1\|2566498_2568010_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_010616536.1\|2569303_2569543_+	cell division protein ZapB	NA	NA	NA	NA
WP_010616537.1\|2570246_2570780_-	MltR family transcriptional regulator	NA	NA	NA	NA
WP_010616539.1\|2572583_2573300_-	DUF3053 domain-containing protein	NA	NA	NA	NA
WP_022548541.1\|2576037_2576226_+	urea carboxylase	NA	NA	NA	NA
WP_082231736.1\|2576232_2576469_+	hypothetical protein	NA	NA	NA	NA
WP_082231737.1\|2576386_2576629_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_010616542.1\|2576894_2577191_+	HTH-type transcriptional regulator	NA	NA	NA	NA
WP_010616543.1\|2577237_2577831_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	B3FJI5	Pseudomonas_phage	2.0e-22	39.1
WP_010616544.1\|2577891_2578356_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010616545.1\|2578452_2578881_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_022548552.1\|2582586_2583492_-	MFS transporter	NA	NA	NA	NA
WP_051588482.1\|2584618_2585260_+	hypothetical protein	Q37842	Escherichia_phage	2.0e-15	56.9
WP_022548556.1\|2585692_2586748_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.1e-28	48.9
WP_010615880.1\|2586734_2587325_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	4.2e-73	63.7
WP_041387237.1\|2588389_2588800_-	phage GP46 family protein	Q8HAB8	Salmonella_phage	2.5e-32	58.5
WP_010615877.1\|2588805_2589372_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	2.5e-30	42.3
WP_010615873.1\|2590482_2591805_-	DNA circularization protein	Q8W619	Enterobacteria_phage	7.4e-126	52.9
WP_010615872.1\|2593805_2594129_-\|tail	phage tail assembly protein	Q8W621	Enterobacteria_phage	1.8e-22	51.9
WP_010615871.1\|2594125_2594491_-	hypothetical protein	U5P076	Shigella_phage	8.7e-45	69.0
WP_010615870.1\|2594490_2595999_-\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	1.9e-170	61.0
WP_010615869.1\|2595995_2596274_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_010615868.1\|2596270_2596810_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	1.9e-51	51.9
WP_072216149.1\|2596799_2597333_-	hypothetical protein	Q8HAC8	Salmonella_phage	1.9e-48	59.3
WP_010615866.1\|2597319_2597703_-\|head	phage head closure protein	NA	NA	NA	NA
WP_010615865.1\|2597699_2598017_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	4.6e-10	33.0
WP_010615864.1\|2598067_2599321_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.5e-149	68.7
WP_010615863.1\|2599333_2600140_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.1e-84	59.3
WP_072216150.1\|2601536_2603507_-\|terminase	terminase	A0A0U2C138	Paracoccus_phage	9.6e-138	45.2
WP_010615860.1\|2603859_2604195_-	HNH endonuclease	Q9B020	Phage_GMSE-1	5.5e-46	79.8
WP_022548564.1\|2604191_2604416_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_010615859.1\|2604415_2604892_-\|lysis	lysis protein	Q2A0C4	Sodalis_phage	2.4e-18	39.9
WP_010615857.1\|2605075_2605285_-	hypothetical protein	NA	NA	NA	NA
WP_010615855.1\|2605960_2606455_-	lysozyme	B6SD42	Bacteriophage	8.4e-59	70.3
WP_015873861.1\|2606447_2606639_-\|holin	holin	B6SD41	Bacteriophage	3.7e-15	65.0
WP_022548567.1\|2606710_2607799_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	2.0e-100	61.7
WP_082231738.1\|2607816_2608242_-	RusA family crossover junction endodeoxyribonuclease	A0A0H5AUD2	Pseudomonas_phage	2.2e-15	40.5
WP_010615848.1\|2611182_2611782_-	ash family protein	NA	NA	NA	NA
WP_010615847.1\|2612061_2612853_-	hypothetical protein	A0A2L1IV39	Escherichia_phage	3.2e-68	54.4
WP_010615846.1\|2613052_2613895_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	2.0e-44	38.4
WP_010615845.1\|2614101_2614371_+	hypothetical protein	Q2A0A2	Sodalis_phage	1.1e-07	70.5
WP_010615844.1\|2614379_2614778_-	single-stranded DNA-binding protein	A0A1W6JNW8	Morganella_phage	1.8e-35	54.5
WP_010615840.1\|2615921_2616209_-	hypothetical protein	NA	NA	NA	NA
WP_072216153.1\|2616192_2616507_-	hypothetical protein	NA	NA	NA	NA
WP_010615838.1\|2617262_2617601_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	7.6e-27	62.5
WP_041387629.1\|2617773_2618493_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.0e-76	57.0
WP_022537112.1\|2620625_2621468_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.3e-103	86.9
WP_072216169.1\|2621810_2621990_+	hypothetical protein	NA	NA	NA	NA
WP_010616723.1\|2622106_2622292_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	3.8e-12	61.4
WP_010616724.1\|2622541_2625169_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-80	38.1

DBSCAN-SWA_7

3495813 : 3548977

Burkholderia_phage(29.17%)

integrase,tail,plate,terminase,transposase,tRNA

attL 3508605:3508625|attR 3549131:3549151

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010616653.1\|3495813_3498633_+\|tRNA	isoleucine--tRNA ligase	L7Y3E1	Megavirus	1.0e-76	25.7
WP_010616652.1\|3498632_3499133_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_010616651.1\|3499142_3499613_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_010616650.1\|3499593_3500547_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_010616649.1\|3500769_3501585_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_010616648.1\|3502055_3503204_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	4.8e-49	32.0
WP_010616647.1\|3503217_3506442_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_010616646.1\|3506676_3507825_+	porin	NA	NA	NA	NA
WP_010616645.1\|3508112_3508595_+	type 3 dihydrofolate reductase	A0A219UQN5	Bacillus_phage	8.3e-27	42.9
3508605:3508625	attL	NA	NA	NA	NA
WP_010616644.1\|3508785_3509640_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	A0A075BTY6	Microcystis_phage	2.1e-09	43.2
WP_022549127.1\|3509644_3510070_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_010616642.1\|3510074_3510899_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010616641.1\|3510891_3511884_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_010616640.1\|3511873_3513169_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA
WP_051588495.1\|3513223_3515635_-	LPS assembly protein LptD	NA	NA	NA	NA
WP_010616638.1\|3515781_3516585_+	co-chaperone DjlA	NA	NA	NA	NA
WP_010616637.1\|3516599_3517259_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_010616636.1\|3522841_3523606_+	DedA family protein	NA	NA	NA	NA
WP_010616635.1\|3523602_3524304_-	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	7.3e-24	35.6
WP_022547376.1\|3528489_3528732_-	DUF551 domain-containing protein	V5KST2	Escherichia_phage	2.5e-08	47.4
WP_041387424.1\|3528838_3529213_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.0e-29	51.7
WP_010617106.1\|3529206_3529629_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.3e-09	35.2
WP_022547378.1\|3529765_3529945_-	hypothetical protein	NA	NA	NA	NA
WP_022547380.1\|3530379_3530592_-	hypothetical protein	NA	NA	NA	NA
WP_082231702.1\|3530595_3530832_-	hypothetical protein	NA	NA	NA	NA
WP_010617119.1\|3530995_3531526_-	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.6e-42	51.4
WP_010617118.1\|3531558_3531789_-	hypothetical protein	NA	NA	NA	NA
WP_010617117.1\|3531791_3532094_-	hypothetical protein	NA	NA	NA	NA
WP_010617116.1\|3532105_3533260_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-111	55.2
WP_022549143.1\|3533272_3534739_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.1e-121	41.3
WP_022547322.1\|3534738_3535689_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.4
WP_022547321.1\|3535701_3536022_-	hypothetical protein	A0A0S4L7B4	Pseudomonas_phage	1.0e-09	42.5
WP_022547386.1\|3538361_3538655_+	hypothetical protein	Q6QIC8	Burkholderia_phage	8.9e-16	54.9
WP_022547387.1\|3538651_3539296_+	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	7.1e-58	56.9
WP_051588469.1\|3539324_3539771_+	hypothetical protein	NA	NA	NA	NA
WP_022547389.1\|3539909_3540233_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.3e-12	41.8
WP_022547390.1\|3540235_3540547_+	hypothetical protein	NA	NA	NA	NA
WP_022547392.1\|3541098_3542415_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	9.8e-147	63.7
WP_082231703.1\|3544724_3545426_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.8e-45	46.2
WP_022548472.1\|3545415_3545958_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-35	46.8
WP_082231767.1\|3546005_3546347_+\|tail	phage tail protein	A4JWL8	Burkholderia_virus	4.5e-11	35.5
WP_022548888.1\|3546562_3547114_+	hypothetical protein	Q37842	Escherichia_phage	1.5e-24	38.2
WP_022549149.1\|3547121_3547712_+\|tail	tail fiber assembly protein	Q37843	Escherichia_phage	1.6e-35	47.3
WP_022549150.1\|3547628_3548201_-\|tail	putative phage tail protein	Q37842	Escherichia_phage	2.1e-16	53.3
WP_022548474.1\|3548386_3548977_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
3549131:3549151	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3572183 : 3581057

Erwinia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010616105.1\|3572183_3573308_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.3e-06	36.4
WP_010616106.1\|3573359_3574352_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.6e-32	37.6
WP_010616107.1\|3574446_3577008_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.2e-28	21.3
WP_082231748.1\|3577164_3577422_+	hypothetical protein	NA	NA	NA	NA
WP_022537112.1\|3577390_3578233_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.3e-103	86.9
WP_010617432.1\|3578553_3578781_+	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.2e-20	68.0
WP_010617433.1\|3578780_3578987_+	hypothetical protein	F1BUS2	Erwinia_phage	3.4e-14	57.4
WP_010617435.1\|3580613_3580805_+	hypothetical protein	F1BUR9	Erwinia_phage	9.5e-19	76.2
WP_010617436.1\|3580823_3581057_+	DinI family protein	E5G6M1	Salmonella_phage	2.7e-15	46.8

DBSCAN-SWA_9

3720810 : 3789009

Burkholderia_phage(25.0%)

tail,plate,protease,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010616924.1\|3720810_3721794_+\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_010616923.1\|3721846_3722500_-	hemolysin III family protein	NA	NA	NA	NA
WP_010616922.1\|3722677_3723409_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_010616706.1\|3727214_3727550_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_010616708.1\|3730040_3730814_-	amidohydrolase	NA	NA	NA	NA
WP_010616709.1\|3730801_3731962_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010616712.1\|3734841_3735420_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.4e-11	27.2
WP_022549271.1\|3735468_3735681_+	glutamine amidotransferase	NA	NA	NA	NA
WP_022549272.1\|3735687_3736089_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_022549273.1\|3736092_3736236_+	glutamine amidotransferase class-II	NA	NA	NA	NA
WP_010616713.1\|3736206_3736950_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_010616715.1\|3738297_3740163_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_010616716.1\|3740171_3740849_+	hypothetical protein	NA	NA	NA	NA
WP_010616717.1\|3740914_3742375_-	beta-Ala-His dipeptidase	NA	NA	NA	NA
WP_010616718.1\|3742629_3743088_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_010616720.1\|3744566_3744968_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_022548474.1\|3747527_3748118_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
WP_022549279.1\|3748302_3748875_+\|tail	putative phage tail protein	Q37842	Escherichia_phage	2.1e-16	53.3
WP_022549280.1\|3748781_3749291_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.7e-28	48.5
WP_022549281.1\|3749293_3750460_-	hypothetical protein	Q37842	Escherichia_phage	2.6e-34	40.8
WP_022549282.1\|3750541_3751108_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	5.3e-49	56.3
WP_082231703.1\|3751097_3751799_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.8e-45	46.2
WP_022548471.1\|3751829_3752663_-	hypothetical protein	A4JWJ6	Burkholderia_virus	2.8e-86	57.5
WP_022547392.1\|3754108_3755425_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	9.8e-147	63.7
WP_022547390.1\|3755977_3756289_-	hypothetical protein	NA	NA	NA	NA
WP_022547389.1\|3756291_3756615_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.3e-12	41.8
WP_051588469.1\|3756753_3757200_-	hypothetical protein	NA	NA	NA	NA
WP_022547387.1\|3757228_3757873_-	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	7.1e-58	56.9
WP_022547386.1\|3757869_3758163_-	hypothetical protein	Q6QIC8	Burkholderia_phage	8.9e-16	54.9
WP_022549144.1\|3759039_3759951_-	helix-turn-helix domain-containing protein	A4JWN3	Burkholderia_virus	3.0e-46	60.2
WP_022547321.1\|3760502_3760823_+	hypothetical protein	A0A0S4L7B4	Pseudomonas_phage	1.0e-09	42.5
WP_022547322.1\|3760835_3761786_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.4
WP_010617116.1\|3763266_3764421_+	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-111	55.2
WP_010617117.1\|3764432_3764735_+	hypothetical protein	NA	NA	NA	NA
WP_010617118.1\|3764737_3764968_+	hypothetical protein	NA	NA	NA	NA
WP_010617119.1\|3765000_3765531_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.6e-42	51.4
WP_082231750.1\|3765694_3765931_+	hypothetical protein	NA	NA	NA	NA
WP_022547380.1\|3765934_3766147_+	hypothetical protein	NA	NA	NA	NA
WP_022547378.1\|3766581_3766761_+	hypothetical protein	NA	NA	NA	NA
WP_010617106.1\|3766897_3767320_+	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.3e-09	35.2
WP_041387424.1\|3767313_3767688_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.0e-29	51.7
WP_022547376.1\|3767795_3768038_+	DUF551 domain-containing protein	V5KST2	Escherichia_phage	2.5e-08	47.4
WP_041387342.1\|3770522_3771254_+	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.9e-43	36.7
WP_010618015.1\|3771668_3771947_+	hypothetical protein	NA	NA	NA	NA
WP_010618018.1\|3773421_3775113_+	amylovoran biosynthesis protein AsmF	A0A1S6L3G8	Erwinia_phage	1.4e-142	44.7
WP_082231751.1\|3776718_3777324_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_041387738.1\|3777533_3778037_-	DUF1198 family protein	NA	NA	NA	NA
WP_010618498.1\|3778212_3779079_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.8e-33	37.6
WP_010618497.1\|3779078_3779291_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_010618496.1\|3779373_3780759_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	5.1e-45	36.7
WP_010618495.1\|3780977_3781472_+	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_010618494.1\|3781471_3782188_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_010618493.1\|3782321_3782831_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_022549299.1\|3788352_3789009_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA

DBSCAN-SWA_10

3905695 : 3987811

Burkholderia_virus(31.58%)

integrase,tail,plate,terminase,transposase,tRNA

attL 3913849:3913869|attR 3998657:3998677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010617676.1\|3905695_3906172_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_010617677.1\|3906238_3907030_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010617678.1\|3908288_3909698_-	NADP-dependent phosphogluconate dehydrogenase	V5UT40	Synechococcus_phage	1.2e-30	30.0
WP_022549377.1\|3909831_3910446_-	glycosyltransferase	NA	NA	NA	NA
WP_010618365.1\|3913371_3914385_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.6e-72	42.8
3913849:3913869	attL	NA	NA	NA	NA
WP_010618364.1\|3914430_3915327_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	4.3e-45	39.9
WP_010618363.1\|3915852_3917187_-	MOP flippase family protein	NA	NA	NA	NA
WP_010618361.1\|3922129_3923164_-	glycosyltransferase	NA	NA	NA	NA
WP_010618359.1\|3924138_3925056_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_041387351.1\|3928067_3929204_-	polysaccharide export protein	NA	NA	NA	NA
WP_010618355.1\|3931722_3933207_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	3.7e-25	40.6
WP_021509321.1\|3935135_3935717_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	8.7e-31	41.1
WP_010615887.1\|3935837_3936476_-	uridine kinase	A0A1V0SAA3	Catovirus	8.4e-35	37.1
WP_010615886.1\|3936705_3937317_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_010615883.1\|3944441_3945671_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_022549409.1\|3948912_3949386_+	nucleoside recognition domain-containing protein	NA	NA	NA	NA
WP_022547376.1\|3950941_3951184_-	DUF551 domain-containing protein	V5KST2	Escherichia_phage	2.5e-08	47.4
WP_022549413.1\|3951659_3952082_-	regulatory protein GemA	A0A219VHC6	Ochrobactrum_phage	1.3e-12	39.1
WP_022549414.1\|3952213_3952393_-	hypothetical protein	NA	NA	NA	NA
WP_082231752.1\|3952671_3952908_-	hypothetical protein	NA	NA	NA	NA
WP_010617119.1\|3953071_3953602_-	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.6e-42	51.4
WP_010617118.1\|3953634_3953865_-	hypothetical protein	NA	NA	NA	NA
WP_010617117.1\|3953867_3954170_-	hypothetical protein	NA	NA	NA	NA
WP_010617116.1\|3954181_3955336_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-111	55.2
WP_022549416.1\|3955348_3957136_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.4e-172	51.8
WP_022549417.1\|3957135_3958086_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-65	48.6
WP_051588500.1\|3958098_3958362_-	hypothetical protein	NA	NA	NA	NA
WP_082231768.1\|3958881_3959886_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	6.8e-47	58.8
WP_022549421.1\|3959915_3960683_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.6e-96	65.4
WP_022547386.1\|3961021_3961315_+	hypothetical protein	Q6QIC8	Burkholderia_phage	8.9e-16	54.9
WP_022547387.1\|3961311_3961956_+	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	7.1e-58	56.9
WP_051588469.1\|3961984_3962431_+	hypothetical protein	NA	NA	NA	NA
WP_022547389.1\|3962569_3962893_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.3e-12	41.8
WP_022547390.1\|3962895_3963207_+	hypothetical protein	NA	NA	NA	NA
WP_022547392.1\|3963759_3965076_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	9.8e-147	63.7
WP_022548471.1\|3966520_3967354_+	hypothetical protein	A4JWJ6	Burkholderia_virus	2.8e-86	57.5
WP_022549422.1\|3967350_3967806_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.2e-19	34.7
WP_022549423.1\|3968032_3969109_+	hypothetical protein	A4JWJ9	Burkholderia_virus	5.5e-63	41.4
WP_010616703.1\|3969101_3970040_+	hypothetical protein	A4JWK0	Burkholderia_virus	2.2e-60	41.9
WP_010616702.1\|3970042_3970396_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	9.7e-09	35.9
WP_010616700.1\|3970858_3971356_+	hypothetical protein	NA	NA	NA	NA
WP_010616699.1\|3971408_3971954_+	hypothetical protein	NA	NA	NA	NA
WP_010616698.1\|3971950_3973387_+\|tail	tail protein	A4JWK5	Burkholderia_virus	1.7e-168	61.3
WP_010616697.1\|3973430_3973955_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	9.3e-56	60.3
WP_010616696.1\|3973974_3974301_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010616694.1\|3974582_3976232_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	7.7e-48	30.2
WP_010616693.1\|3976261_3976873_+	hypothetical protein	A4JWL0	Burkholderia_virus	7.3e-36	42.9
WP_010616692.1\|3976872_3977754_+\|tail	phage tail protein	NA	NA	NA	NA
WP_010616691.1\|3977768_3978011_+	membrane protein	A4JWL2	Burkholderia_virus	1.3e-15	60.0
WP_010616690.1\|3977998_3979183_+	hypothetical protein	Q6QIA2	Burkholderia_phage	3.7e-76	44.9
WP_010616689.1\|3979179_3979821_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	9.4e-26	40.7
WP_010616688.1\|3979841_3980204_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.3e-29	56.6
WP_022549429.1\|3980194_3981319_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.0e-88	50.3
WP_022549430.1\|3981308_3981803_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	2.8e-38	48.7
WP_022549431.1\|3981884_3983054_+	hypothetical protein	Q37842	Escherichia_phage	1.1e-37	42.1
WP_022549432.1\|3982960_3983470_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.6e-28	49.3
WP_022547402.1\|3983472_3984066_-	hypothetical protein	Q37842	Escherichia_phage	3.0e-18	46.8
WP_022548474.1\|3984227_3984818_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
WP_022549433.1\|3985292_3985520_-	hypothetical protein	NA	NA	NA	NA
WP_010618837.1\|3986221_3987811_+	peptide chain release factor 3	A0A2K5B2A5	Erysipelothrix_phage	4.8e-31	24.7
3998657:3998677	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4031076 : 4035370

Shigella_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010616174.1\|4031076_4031904_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	7.5e-44	37.7
WP_022548474.1\|4032257_4032848_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.6e-64	67.4
WP_022549469.1\|4033009_4033603_+	hypothetical protein	Q37842	Escherichia_phage	7.1e-20	51.1
WP_022548508.1\|4033605_4034115_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.6e-28	49.3
WP_022549470.1\|4034021_4034618_-\|tail	putative phage tail protein	Q37842	Escherichia_phage	7.1e-20	51.1
WP_041387358.1\|4034779_4035370_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.0e-63	67.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022546

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection