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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017530 Pseudomonas putida BIRD-1, complete sequence 6 crisprs DEDDh,csa3,cas3,DinG,WYL 0 2 6 0

Results visualization

1. NC_017530
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_1 753929-754027 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_2 787447-787545 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_3 1822866-1822972 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_4 3669409-3669544 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_5 4149770-4149929 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017530_6 5508500-5508608 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017530_4 4.1|3669440|20|NC_017530|PILER-CR 3669440-3669459 20 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 126064-126083 1 0.95
NC_017530_3 3.1|1822905|29|NC_017530|CRISPRCasFinder 1822905-1822933 29 NC_016115 Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence 20322-20350 4 0.862
NC_017530_3 3.1|1822905|29|NC_017530|CRISPRCasFinder 1822905-1822933 29 NZ_CP007144 Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence 63924-63952 5 0.828
NC_017530_3 3.1|1822905|29|NC_017530|CRISPRCasFinder 1822905-1822933 29 MT771343 Gordonia phage Clown, complete genome 44305-44333 7 0.759

1. spacer 4.1|3669440|20|NC_017530|PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

ccccggccttggcgccggcg	CRISPR spacer
gcccggccttggcgccggcg	Protospacer
 *******************

2. spacer 3.1|1822905|29|NC_017530|CRISPRCasFinder matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 4, identity: 0.862

ggcgggtggcggtctgtg-ggggcgggttt	CRISPR spacer
cgcgggtggcggtctgtgaggggcaggtc-	Protospacer
 ***************** *****.***. 

3. spacer 3.1|1822905|29|NC_017530|CRISPRCasFinder matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 5, identity: 0.828

ggcgggtggcggtctgtggg--ggcgggttt	CRISPR spacer
ggcgggtggcggcctgtggggtggctggc--	Protospacer
************.*******  *** **.  

4. spacer 3.1|1822905|29|NC_017530|CRISPRCasFinder matches to MT771343 (Gordonia phage Clown, complete genome) position: , mismatch: 7, identity: 0.759

ggcgggtggcggtctgtgggggcgggttt	CRISPR spacer
cctgggtggcggtcggtgggggcggggcc	Protospacer
  .*********** *********** ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 323352 : 386085 57 Bacillus_virus(37.5%) holin,protease,transposase NA
DBSCAN-SWA_2 1133608 : 1141387 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_3 2064816 : 2076998 12 uncultured_Caudovirales_phage(66.67%) tRNA NA
DBSCAN-SWA_4 3086494 : 3155272 86 Pseudomonas_phage(47.06%) tRNA,capsid,terminase,integrase,head,tail,portal,protease attL 3081992:3082008|attR 3154754:3154770
DBSCAN-SWA_5 3307149 : 3317161 12 uncultured_Caudovirales_phage(44.44%) NA NA
DBSCAN-SWA_6 3716636 : 3752276 30 Feldmannia_irregularis_virus(33.33%) coat,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage