CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	5 crisprs	DEDDh,cas3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014774_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014774_1

136412-136533

Orphan

Consensus_repeat	Method
TTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014774_1

>merge|NC_014774|1|136412-136533|CRISPRCasFinder
TTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATGATATCAAATGGACTATAAATAATTATGCGTATCTGCCCATCTCTTCCCTTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATG

>NC_014774|1|1|136412-136533|CRISPRCasFinder
TTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATG	ATATCAAATGGACTATAAATAATTATGCGTATCTGCCCATCTCTTCCC
TTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014774.1\|WP_013461539.1\|135406_136300_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226908
NC_014774.1\|WP_013461537.1\|133290_133704_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_014774.1\|WP_013461533.1\|129620_131006_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_014774.1\|WP_013461535.1\|131835_132408_+\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|234650
NC_014774.1\|WP_013461542.1\|138176_138674_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_014774.1\|WP_013461546.1\|142372_143629_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NC_014774.1\|WP_013461548.1\|144331_145747_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NC_014774.1\|WP_013461544.1\|139884_140871_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_014774.1\|WP_013461532.1\|128472_129342_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_014774.1\|WP_044054188.1\|137259_138048_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181938
NC_014774.1\|WP_013461550.1\|146649_147186_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NC_014774.1\|WP_143827756.1\|127306_128272_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_014774.1\|WP_013461543.1\|138906_139866_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_014774.1\|WP_013461549.1\|145743_146547_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|226268
NC_014774.1\|WP_013461534.1\|131388_131718_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NC_014774.1\|WP_013461545.1\|140880_142347_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_014774.1\|WP_013461547.1\|143660_144335_-\|CpaD-family-pilus-assembly-lipoprotein	unknown	unknown	gnl\|CDD\|370518
NC_014774.1\|WP_013461538.1\|133980_135402_+\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_014774.1\|WP_013461530.1\|126692_127310_-\|septation-protein-A	unknown	unknown	gnl\|CDD\|234704
NC_014774.1\|WP_013461536.1\|132404_133118_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581

Protein	Function_ID	Function_description	E-value
NC_014774.1\|WP_013461539.1\|135406_136300_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226908	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	8.81223e-91
NC_014774.1\|WP_013461537.1\|133290_133704_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	7.37723e-58
NC_014774.1\|WP_013461533.1\|129620_131006_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_014774.1\|WP_013461535.1\|131835_132408_+\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	5.81925e-42
NC_014774.1\|WP_013461542.1\|138176_138674_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	2.68152e-49
NC_014774.1\|WP_013461546.1\|142372_143629_-\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	1.98386e-71
NC_014774.1\|WP_013461548.1\|144331_145747_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	1.44878e-116
NC_014774.1\|WP_013461544.1\|139884_140871_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	4.27852e-72
NC_014774.1\|WP_013461532.1\|128472_129342_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.71269e-102
NC_014774.1\|WP_044054188.1\|137259_138048_+\|metal-ABC-transporter-permease	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	1.9128e-65
NC_014774.1\|WP_013461550.1\|146649_147186_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.08065e-30
NC_014774.1\|WP_143827756.1\|127306_128272_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.88542e-136
NC_014774.1\|WP_013461543.1\|138906_139866_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	2.67417e-33
NC_014774.1\|WP_013461549.1\|145743_146547_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|226268	COG3745, CpaB, Flp pilus assembly protein CpaB [Intracellular trafficking and secretion].	9.32888e-58
NC_014774.1\|WP_013461534.1\|131388_131718_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01864e-36
NC_014774.1\|WP_013461545.1\|140880_142347_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	5.31385e-176
NC_014774.1\|WP_013461547.1\|143660_144335_-\|CpaD-family-pilus-assembly-lipoprotein	gnl\|CDD\|370518	pfam09476, Pilus_CpaD, Pilus biogenesis CpaD protein (pilus_cpaD). Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologs is not known.	2.14785e-66
NC_014774.1\|WP_013461538.1\|133980_135402_+\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_014774.1\|WP_013461530.1\|126692_127310_-\|septation-protein-A	gnl\|CDD\|234704	PRK00259, PRK00259, intracellular septation protein A; Reviewed.	3.32356e-47
NC_014774.1\|WP_013461536.1\|132404_133118_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.55436e-131

>NC_014774.1|WP_013461539.1|135406_136300_-|zinc-ABC-transporter-substrate-binding-protein
MKNTLISFIFFFPLLCATSRASSLQVVASIKPIHSIVASIMNGVGKPSLLVKGNSSPHEYSLRPSDTMMLKNADIIFWLGSEMEFFLVKPLGYVDKQSNIITLSNSPNLHKITLPQKQQDHHHGGAVVYDMHLWLAPINAKHMAHVIAQELIKNDPKNKEIYTKNEEDFGTKLDKLDKELHDILLPVQGKKIIVSHGAYRYFEKHYNLQIIDSIMPNTILLGAKSLQKIKDRIVSEKVSCLFYEPEFDSKIIQSIANNTGIIVGMLDPEGLLLPEGPDLYFQLLRNLSKSIAQNCIS
>NC_014774.1|WP_013461538.1|133980_135402_+|NADP-dependent-phosphogluconate-dehydrogenase
MQKAEIGIIGLGAMGSNLALNMLEKGFRLAVYNQEIELTEVFVKKAHGLSQKFIATKNLQQMVEAISQPRKILMMITDGNPVDQLIEKLKPLLSSEDILLDGGNSHFADTQTRSLGLNQKGIYFIGIGVSGGTNGARYGPSLMVGGNEKAYHSIEHILLSISANYQNNPCCALLGPDGTGHFVKTIHNGIEYANMQLIADIYGILRDGLNKTSVETSHLFSKWNTGKLNSYLTKITAEILSSIDPITGLSMIDVICDTASQKGTGIRSIIEGHKLFSSLTITEIAIFARNLSLHNDECKKMQLVFKNPSSFCLKYSDTLIKDLENALYVSKILSFTQGFLLIHKSSKKYNWNLQLSKIARIWRAGCIIRSQLLNDIVESLIENPNDANLLMIPSISQKVKSTISSLRRVVIDCTKQGYPVPALSAALSYFDAYTHGNGTAHLIQAQRDFFGSHGFDRKDGILKNHGPWQNNIR
>NC_014774.1|WP_013461537.1|133290_133704_+|50S-ribosomal-protein-L19
MNIIDELDHEEMARIESMRMLPEFSPGDTIAVKTIITEGEKSRIQSYEGICIARSGRGINKNFTVRKISYGEGINRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARITENTGKRAKALNEKARKSMAPKR
>NC_014774.1|WP_013461536.1|132404_133118_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MTFHATVLTLYPEIFPGHLGKSMAGKALACNVWSIDTVQIRHFATDRNNSVDDTPAGGGAGMILKADVLGKAIDHAISKYTQKDIPRILMSPRGQPLKQERVRQISNKSGAIIICGHFEGVDERIVKARDLEEISVGDYILSGGEPAALVLLDAIVRLLPGVLGNKQSTIHESFENGLLEFPQYTKPQIWEGLRIPSVLNSGNHEKIRQWREEQSLALTKKHRPDLLSKKVCPMRNN
>NC_014774.1|WP_013461535.1|131835_132408_+|16S-rRNA-processing-protein-RimM
MVKSEKLVLIATIGTTHGLKGEVYVNSYASNPMDLSRYILYSDDAKEFKILDIYQNNKRLIATFDGIYDIHSAEKLRHLKLYARRQDFKDEELEEDEFFNADLEELETFDLQGKYWGKICGIYDFGAGAVLEFKDSKEKKFLIPFTKSTVLSVNLKENKILIDSVSAGLDCMTKKDKNHECQSSSPGDIP
>NC_014774.1|WP_013461534.1|131388_131718_+|30S-ribosomal-protein-S16
MTLKIRLACGGSKKRHHYRIVVANSRSPRDGRFIEKIGTWNPTLPKESPMRFTMDFERIQHWISKGAQPTDRILFFMDKAGLIKRPSRNNPKKAMPKDKALKRLESKNN
>NC_014774.1|WP_013461533.1|129620_131006_+|signal-recognition-particle-protein
MFENLQERLGSVFQKITGRGNLSETDISKTLREIRRTFLEADVSLEVVQALNERIQEKAKGAKILKSIQPGQMVVKIVHDELIEVLGTENVGLDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKMLMASLDIHRPAAQEQLRYLGEKIQVDTLEVVPKQLPAEIATRAIQNARDRGYDVVILDTAGRNHINESLMQEISEVKSLTNPHEILLVADALTGQDAVHLARNFDEKIGLTGIILTRMDGDGRGGAALSMRFVTGKPIKAIGTGEKIDDLENFFPDRVVNRILGMGDIVSLVEKAARNLDEEKATATAKKIAKGKFDLEDLEEQFRQTQKIGGISSLLSMLPGMGSFKPNIMPSNFNDKTINHHIAIISSMTKEERANPSIIKHSRKKRIAAGSGTDAVRINKLLKLYRQIADMMNSTKGHGGDTSTQQMMQTLKNKIGFGKNGGFPGI
>NC_014774.1|WP_013461532.1|128472_129342_-|diaminopimelate-epimerase
MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLADAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDMGEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDLSGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSGNTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTKV
>NC_014774.1|WP_143827756.1|127306_128272_-|signal-recognition-particle-docking-protein-FtsY
MGNKQVVSKSFSWIQKKAKGFASTSLKLKEGIAAVISSKRLDDSVRDELEDLLIRADIGLEAAQEIVGDLVAKRYNKDVSIQCVLQDVSEKIYKILMPISKSFDLDFSHRPHVILVVGVNGAGKTTAIGKLSKKMSDSGLKIMLAAGDTFRSAAVDQLKIWADRTSSDFVGSEIGSDAAALAYEAFRQAQAKNVDVLIIDTAGRLHNNSALMAGIGKMIRVLKRLDPDAPHSVLQVLDATVGQNALRQVELFQSVAGTTGLIMTKLDGTARGGILVSIAIKHKIPVYFLGTGEGINDLEPFVAKDFSTAITGYFDYNEKKI
>NC_014774.1|WP_013461530.1|126692_127310_-|septation-protein-A
MSASQSQHKLIRFLLEFAPGIIFWLCNLYGNQLILRYPVLSQFGGVIFFSTVLLMVLTGISLGVFWVLFHEIRIMPIVSGVFVLVLGGLTVWFRDEAFIKMKPTLFYFIFSITLFIGYLFKKSFVKLLLSQVMSLDSIGWRKLTLRWAFFSLFLSFLNEIVWRNFSTETWVFFKTVGTFPILLIFSIAQINIINKHSISCEEERE
>NC_014774.1|WP_044054188.1|137259_138048_+|metal-ABC-transporter-permease
MYNEFFIRALFAGIGIILSTGPLGCFIVWQRMTYFGDTIAHSALLGVAFSLMLNLPLPLCIFMVAALTSIILLQIQKSEFIASDAILGVITHSTISISLIMLSFMTWVNTDLTSFLFGDILAINTNDIIIIWSVGILNIVILIKIWKSLLATTVNYELAKAEGMQPEKVKLIFTMITALMISISIKFIGITLITSLLILPTVTARRFATSPENMVILTTVIGILGVILGLYGSLIFDTPSGPSIIITSLIFFILSFLRALKK
>NC_014774.1|WP_013461542.1|138176_138674_+|ferritin
MANKKRYNILNELMNIEFQAHYYYIQAAAWAASRNLDGCCNFFLKHAKEEYSHVMKIFQYLVDLGEKATFSDLLKSDINANDVEGIFSLVYEHEVEVTKAYDKAIANILEEKDNQIFCFLQWFASEQDEEMALCRRILDKIKLIGSGPHSLYLFDQEMAKIASES
>NC_014774.1|WP_013461543.1|138906_139866_-|type-II-secretion-system-F-family-protein
MFDSVTIAVVVATSISVFSLIYAVIIPSLGSDELEKRIKSVSIEREELRKQQLARLGKPSSGLRTHDNMSLRKFVEKFNLKAILVDKPMVDKLRAAGFRSEYALNILLIIRLVLPIITLVIGIIWIFGFDKLEQYSFFNRLFVVILIGYAGFYAPSMFISNLVTKRQDSIRRAWPDALDLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTAELSFLLNRQVAFENFYNRTQMDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEAEKKAAALSPKLTVPMILFFLPVLMLVIIGPAILNIMDTMKG
>NC_014774.1|WP_013461544.1|139884_140871_-|type-II-secretion-system-F-family-protein
MDLDINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRKVLRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSSFFVSLCVCLSSALVVPRVLLQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQHLGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMRTMINFDM
>NC_014774.1|WP_013461545.1|140880_142347_-|CpaF-family-protein
MFGKREKGPIGSANRENFKLRQEKAQQGKEIEDSGSDGTNQSSFLDQSSELGLPNILKHRSSHYYDIKATVFGTLIEMIDITKLSQYDGELAKKEIAELMDEIISIKDIVMPFEEKEDLLEDLSNDILGYGPLQPLIARDDIADIMVNGPDKVFIEVNGKTIETGISFRNNEQLLSVCQRIVNQVGRRVDEASPICDARLLDGSRVNVIIPPLALDGATLTIRKFKKDKLTLDHLVRFGAITEAGSQLLQIIGRVRCNILISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNPRESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEVVGMEGNVIITQDLIKYDVIGQDESGKLIGHHVGSGVSRPRFWNRAAQYGEEKNLAEVLESVEKQPRI
>NC_014774.1|WP_013461546.1|142372_143629_-|transcriptional-regulator
MSIEYKGSGSDVLNKHGDGSLPSISAHAFCVTDSLYSVIEKSKIDRRMNRVNMRITKGSITEAIDVFADSATPNLLIIQTTVDSRKILSSLEPLAEVCDSTTKVIVIGETNDVLLYRELIASGISEYLIEPLSVSDIIKAISNIFVEKNKEDSFGSSIAFIGSRGGVGSSTIAHNCAFSIASVLATDTILADLDLPYGTANINFDQDPIYGILDLISSSGKIDEGLVDKIMVRYVENLSILTAPAILDCTYDFDEKDILPVIELLKRIAPLTILDLPHIWNRWNRQILTLSDKVVITTSLDLVSLRNTKNLIDFLTKNRPNDKPPYLVINQVGMPKKPEISIDDFCAPLGIDPSVIIPFDAFVFGISANSGKMIREMNPQSSVSNLLVDFSNILLDRITIVKPKNAIYDKIKTFLKIK
>NC_014774.1|WP_013461547.1|143660_144335_-|CpaD-family-pilus-assembly-lipoprotein
MMRDIMIKEIFGGMCFKRLVSFFLMQISFLLLFCGNNVLANQNDYRDRYPIVMKKVEKSLDIPLLSGRGKLPSDMYDTIKGFIDRYKQNSTSVIFILIPTPTISSHAIQDALKNIRRFIISNGIPSSSLSERSYDADYELDIDTIRLSYFASRPSAGKCGFWPEDILGSSLENSNWSNYGCSYQNNLAAQIVNPMDLFAPRSMTPPDAVHRDRSIHRYQEGGKK
>NC_014774.1|WP_013461548.1|144331_145747_-|type-II-and-III-secretion-system-protein-family-protein
MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVILHLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDIRNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTASGSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTISSGGPSKGKRIDFDGSLGGQGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSVGANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTVELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVKPVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK
>NC_014774.1|WP_013461549.1|145743_146547_-|Flp-pilus-assembly-protein-CpaB
MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMVITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHGVSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAIDQTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFNLGEDGGRGIQVIKSGIISNKDGEEMSR
>NC_014774.1|WP_013461550.1|146649_147186_-|prepilin-peptidase
MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIALHVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVVLLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGISTSF

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Crispr_ID: NC_014774_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014774_2

202013-202111

Orphan

Consensus_repeat	Method
CACCTGTAGATTTAAAGCCTCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014774_2

>merge|NC_014774|2|202013-202111|CRISPRCasFinder
CACCTGTAGATTTAAAGCCTCTTGGTGCTAGAGTAGAAAAGGTCGAAGTACGTGTTGGTGCTATTGAGAACAAATCACCTGTAGATTTAAAGCCTCTTG

>NC_014774|2|2|202013-202111|CRISPRCasFinder
CACCTGTAGATTTAAAGCCTCTTG	GTGCTAGAGTAGAAAAGGTCGAAGTACGTGTTGGTGCTATTGAGAACAAAT
CACCTGTAGATTTAAAGCCTCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014774.1\|WP_013461626.1\|213217_214588_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350771
NC_014774.1\|WP_013461606.1\|199771_199945_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461604.1\|199422_199677_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_193345361.1\|209245_209416_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_014774.1\|WP_013461618.1\|207069_207456_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461598.1\|194835_195354_-\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461599.1\|196505_197087_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_014774.1\|WP_013461622.1\|209451_210243_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|226144
NC_014774.1\|WP_013461624.1\|210906_212928_+\|DNA-polymerase	unknown	unknown	gnl\|CDD\|176479
NC_014774.1\|WP_143827761.1\|206781_207015_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461603.1\|198614_199403_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|226144
NC_014774.1\|WP_193345360.1\|195413_195593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235082
NC_014774.1\|WP_013461600.1\|197250_197610_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461602.1\|198281_198521_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461625.1\|212924_213230_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NC_014774.1\|WP_013461623.1\|210258_210903_+\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NC_014774.1\|WP_013461611.1\|202719_203178_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461620.1\|208008_209175_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NC_014774.1\|WP_044054203.1\|200298_201039_+\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NC_014774.1\|WP_013461601.1\|197628_198198_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014774.1\|WP_013461603.1\|198614_199403_+\|phage-repressor-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	2.19955e-40
NC_014774.1\|WP_193345360.1\|195413_195593_+\|hypothetical-protein	gnl\|CDD\|235082	PRK02888, PRK02888, nitrous-oxide reductase; Validated.	0.00275584
NC_014774.1\|WP_013461624.1\|210906_212928_+\|DNA-polymerase	gnl\|CDD\|176479	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used to search for protein signatures. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains.	1.88002e-88
NC_014774.1\|WP_013461623.1\|210258_210903_+\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	1.10666e-24
NC_014774.1\|WP_013461625.1\|212924_213230_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	8.25829e-08
NC_014774.1\|WP_193345361.1\|209245_209416_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	4.25988e-10
NC_014774.1\|WP_013461599.1\|196505_197087_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.14066e-12
NC_014774.1\|WP_013461622.1\|209451_210243_+\|phage-repressor-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	6.17043e-43
NC_014774.1\|WP_044054203.1\|200298_201039_+\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	1.59546e-40
NC_014774.1\|WP_013461626.1\|213217_214588_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350771	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins. Proteins belonging to the SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprise a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. The bacterial SNF2 present in this family are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.1968e-89
NC_014774.1\|WP_013461620.1\|208008_209175_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	9.24183e-85

>NC_014774.1|WP_044054203.1|200298_201039_+|nucleotide-binding-protein
MKKYKLTFHGSIEELKDLVKKEELQGTWELADSIKPHRFVSNKGGILLWYPSTNSVVFQGKSTDELLHVNLKKAIEQSRISNSNSRIAHSERVFIVHGHDMDSKDQLELILYKLGIENQFILQNTAGNGITIIEELEKEIVKTQNRFGIVLLTPDDYGYSSTEGIESRQPRARQNVILEMGMLLSSLGRENVVILQKQHLEKPSDISGIIYLPFNEHVKDIAHKLIQRLQHSGFKIDNNDIANALS
>NC_014774.1|WP_013461606.1|199771_199945_+|hypothetical-protein
MISISFNHFVVIVCIIVALACVGGLIYDHLKVKRRRKPVKLSFRNAKIPRSKKRKKK
>NC_014774.1|WP_013461604.1|199422_199677_+|hypothetical-protein
MLSPKLKYYTPTEIGEMLTPKLTVPQVNYMLVQDGFQLEDKHDDPHKPMWSKLVADQIQYAINATIIAYIADGMREDEIEAERN
>NC_014774.1|WP_013461603.1|198614_199403_+|phage-repressor-protein
MSSIIPFEFESNKIRTVVDKDNTILFVAKDIAEALGYKRPNDAVNEHCDGTVKHRPIVDSLGRKQKTRVIKEPDVYRLIVKSKLPSAQKFERWIFEEVLPTLRKTGSYSIKPPKPQVFITGGLLKELRLLTDNHGNLMRKAGIDENQILIASSRVMESVLGVNPANTLDIPTPNNSQYYTATALGEQLPVKLSGREINKRLVRLGFLLVEHEPSGKRRNILTTKGKELGGRVFDSGKKHSDGSIVQSIKWQENILDILKANH
>NC_014774.1|WP_013461602.1|198281_198521_+|hypothetical-protein
MKTKTFLIASIIATSGLLAGCNLADEPKNNIVDGLVTIPNNTTTEVKQAVSEDIAVEFLDDEEDNSIEVIHLDDEIAID
>NC_014774.1|WP_013461601.1|197628_198198_+|hypothetical-protein
MTNKYELTNEIVERKGVTLYRIKALRDIKEVSGVIVKKGKLGGWVDSVARLSQDGNCWIGEHAMVYGKANVYEDAYVSGHAKVYGQAEVFGNAIVDGKAEVFGNAKVYGNAEVFGCSRVYGSALVSGNSKVKGNARILGNVQVYGNAEVRDDAVLVGDVLVFGDTCIGGVDVLSGDIHIECNGQIKEAS
>NC_014774.1|WP_013461600.1|197250_197610_+|hypothetical-protein
MTTKLQADFKKHEELELNKEDMFERFKEHYLNRDLSYALGRYIQSDLYHEIAVHMNPDYSGLGIRAMIKDIILDDMVDAFEKFCSFDRSDFADDLIQENFEIEVRFNTPKTHLTKTKIS
>NC_014774.1|WP_013461599.1|196505_197087_-|helix-turn-helix-transcriptional-regulator
MEKELENTLDWREIGQRFKEVRERHNYKRSMIMEKTDDQGGAVYKYEAGAQPASTNYALFLRNTFGASFDWLYDGVENLRSERDRTEKKIFNPRAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKRALGKPLDWIYFGDEPIIPKKNRLQAKQSKSNQIKSNQSSPKAKKKSRL
>NC_014774.1|WP_193345360.1|195413_195593_+|hypothetical-protein
MKVERVLGATGATGATGAIGAIGAIGATGATGAIGATGAIGAIGAIEEEKIRVCENRKI
>NC_014774.1|WP_013461598.1|194835_195354_-|hypothetical-protein
MPRPFTTYTLERTNKILASIASGMTLAKSCKLHGVLVMTFFAWLERDFDDLKKRYEQAKISHMEHLSDKIADTIEAPLSEEEKKYPVSFKRRELQMKRLQWELEKRYRNVYGNHMTVEQKHTIDLKPVLAKIEERRKHQQANKAMRVIEATEKPLECRKLSKDEQSTMKLKK
>NC_014774.1|WP_013461611.1|202719_203178_+|hypothetical-protein
MTENNTSIDINSQAVHLHLKMHQDIIKRMALNSLFIKTCCISLLFLFLFITTNVTLSGFTCLLLTMAFATIDTMYLALERGFRASYNNFVNKLHSNTLQKEDLFILAPERISFWDTAKSFSVCLFYVAPLCFYVFISYIAPPYITRFFYYSW
>NC_014774.1|WP_143827761.1|206781_207015_+|hypothetical-protein
MRRQRMADFDPLIVEEVLGAYYLFKAVEQVDKAEYVMDSISEELLKARSRLLSEGVERLGELAHHVEDVIKSEEIPK
>NC_014774.1|WP_013461618.1|207069_207456_+|hypothetical-protein
MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRDLQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKESWEEPEKEPEEEPREHPDQEHADAYYADQI
>NC_014774.1|WP_013461620.1|208008_209175_+|DUF2800-domain-containing-protein
MTRHAFLSASSSHRWLKCPIAPTLESKIPQTTSSYALEGTFAHNLLAHCLEKGVDAETFANRKITFENDTRIVDAEMASSVQMACEYVRSFSGNLLSETEVPLEPFTTEKGATGTADIIIFNNKHWVIADFKYGAGVPVNPEHNPQLMLYALGALHQYGDIFGSPETVTLTIIQPRIRAGSPLQEWTISSEELREKAKEFQAKGKHALSLKGKRAIPQNVYGVDEDACRFCRAKTRCPALSRHVLLETIRDPKSGCEVDLSKAYSSLPLIEQYIKALKEEVFKRLSEGEEVKGYQLVEGRKGNRTFKDIEQATEYLTGVLGDKAFKKILLSPKEVEQFRKDQTLSSDVWEELQELITRGDGKPVIAPRDIPPVPRIQKAEISDFASLD
>NC_014774.1|WP_193345361.1|209245_209416_+|Rha-family-transcriptional-regulator
MQEINRASNIKTMSSREIAKLTGKEHKHVLRDIENILKDAEIDQSKFGHIYLDKNL
>NC_014774.1|WP_013461622.1|209451_210243_+|phage-repressor-protein
MNNINIIPFEFESNRIRTVVDEDNTILFVAKDIAEALGYKNSNEAVNEHCKGVVKRYPLKTDGGIQKVRVILESDVYRLIVKSKLPSAEKFERWVFEEVLPTLRKTGSYSIKPQKLPSATTIMRFHKHLEVLAKQAGLKDNQLLLKVNRGVTKITGVDQLEVMDIKHLLSPDNDEYLAPTEIGKSLNPVIKAKALNSWLTYLGLQIPKHTKKGFLPTPKGEELGGKMCDVALQHVEGSTPYLKWNPKVIVPYLQKLIGNHQTH
>NC_014774.1|WP_013461623.1|210258_210903_+|DUF2815-family-protein
MQSIKIKGRLSYPALDKMTKMTLGDNSVMEYFGADIIIPKTNKETIARFTEVLRKAAKDSYPNMNPDRFIEQARINKRAIIKDGDEKIATATKPETYTKAYTNSWYISAKNKLVQPLLVDRQAQIVSNPRDVFYAGCWVIAKLNISTYELGTFKTKGFSCTLTGVQFFKNDERWGASPKANASEFDDYGEEEDSDSSVSSFASAETEPDALPWN
>NC_014774.1|WP_013461624.1|210906_212928_+|DNA-polymerase
MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKHLKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPETLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPLSENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDLLNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVSPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSNFPSDDPLRFASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKGLPLKAEGYEALRYRK
>NC_014774.1|WP_013461625.1|212924_213230_+|VRR-NUC-domain-containing-protein
MRGLSHQQSEHEIEKRLVKGVQQLDCWVRKASFVSHRGCPDRLIITPQGRLWWIEVKQPSGRLSPQQKIEIEELLRRGQRVKVLFSAEEVDNFLKELACSC
>NC_014774.1|WP_013461626.1|213217_214588_+|DEAD/DEAH-box-helicase
MLVLESHQIKMVHWMLQNKRCAVWASMGSGKTVSVLFALSYIQMLDPRPALIIAPLRVAQSVWSAEVKRWSAFKNMTVAVATGTEKQRIQALNQPASLVVTNFENVPWLVKLLGNQWNFSTIIVDESTKLKAFRIRQGGKMCKALARPAWQTEHFIELTGTPSPNGLIDLWGQLWFLDKGKRLGMTYDCFLQKWFNTHRVGAHVSAVKHTPKPHAQQEIEAKLSDRCLSLNIADYHDISKPICTIHKIALAQSTLKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDENHSWKEVHNAKIEALKAIVEEAGGCPLLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCAHGLNLQYGGNILVFFSLWWDLETHQQMIERIGPLRQKQAGFKRAVFIHYLIAEHTIDELILKRLQTKATVQEILLNALKKGN

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Crispr_ID: NC_014774_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014774_3

554350-554455

Orphan

Consensus_repeat	Method
CAATATACGATATAAACATGTAATAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014774_3

>merge|NC_014774|3|554350-554455|CRISPRCasFinder
CAATATACGATATAAACATGTAATAAAATTGATTTTGATGAGATAATATATTGTATTATTTTTGCGTATATTTACTGCAATATACGATATAAACATGTAATAAAAT

>NC_014774|3|3|554350-554455|CRISPRCasFinder
CAATATACGATATAAACATGTAATAAAAT	TGATTTTGATGAGATAATATATTGTATTATTTTTGCGTATATTTACTG
CAATATACGATATAAACATGTAATAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014774.1\|WP_013461930.1\|566924_567569_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_014774.1\|WP_013461918.1\|554665_555700_+\|porin	unknown	unknown	gnl\|CDD\|308243
NC_014774.1\|WP_013461926.1\|561717_562746_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_014774.1\|WP_013461917.1\|551710_554134_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_014774.1\|WP_044054285.1\|556400_557084_+\|RlmE-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223370
NC_014774.1\|WP_013461931.1\|567576_568872_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|181631
NC_014774.1\|WP_044054282.1\|541500_542724_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NC_014774.1\|WP_013461914.1\|549810_550014_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_014774.1\|WP_013461915.1\|550071_550428_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_014774.1\|WP_013461923.1\|560166_560811_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_014774.1\|WP_013461911.1\|546934_548755_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_014774.1\|WP_013461927.1\|562967_565490_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_014774.1\|WP_013461929.1\|566025_566922_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NC_014774.1\|WP_143827795.1\|549186_549636_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_014774.1\|WP_050780884.1\|544113_545550_+\|NTP/NDP-exchange-transporter	unknown	unknown	gnl\|CDD\|367401
NC_014774.1\|WP_013461910.1\|545851_546676_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273953
NC_014774.1\|WP_013461907.1\|542890_543313_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NC_014774.1\|WP_013461916.1\|550597_551698_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_014774.1\|WP_013461921.1\|557584_557947_-\|response-regulator	unknown	unknown	gnl\|CDD\|381144
NC_014774.1\|WP_013461922.1\|558732_559263_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|223750

Protein	Function_ID	Function_description	E-value
NC_014774.1\|WP_013461930.1\|566924_567569_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.00879e-69
NC_014774.1\|WP_013461918.1\|554665_555700_+\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	4.7285e-14
NC_014774.1\|WP_013461926.1\|561717_562746_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_014774.1\|WP_013461917.1\|551710_554134_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_014774.1\|WP_044054285.1\|556400_557084_+\|RlmE-family-RNA-methyltransferase	gnl\|CDD\|223370	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis].	2.59638e-88
NC_014774.1\|WP_013461931.1\|567576_568872_-\|amidohydrolase-family-protein	gnl\|CDD\|181631	PRK09059, PRK09059, dihydroorotase; Validated.	0
NC_014774.1\|WP_044054282.1\|541500_542724_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NC_014774.1\|WP_013461914.1\|549810_550014_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	8.04091e-19
NC_014774.1\|WP_013461915.1\|550071_550428_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.52652e-59
NC_014774.1\|WP_013461923.1\|560166_560811_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.01618e-40
NC_014774.1\|WP_013461911.1\|546934_548755_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_014774.1\|WP_013461927.1\|562967_565490_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_014774.1\|WP_013461929.1\|566025_566922_-\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	2.33751e-97
NC_014774.1\|WP_143827795.1\|549186_549636_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.83124e-65
NC_014774.1\|WP_050780884.1\|544113_545550_+\|NTP/NDP-exchange-transporter	gnl\|CDD\|367401	pfam03219, TLC, TLC ATP/ADP transporter.	0
NC_014774.1\|WP_013461910.1\|545851_546676_-\|hypothetical-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.61743e-13
NC_014774.1\|WP_013461907.1\|542890_543313_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	2.14318e-50
NC_014774.1\|WP_013461916.1\|550597_551698_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_014774.1\|WP_013461921.1\|557584_557947_-\|response-regulator	gnl\|CDD\|381144	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains. Two-component systems (TCSs), consisting of a sensor and a response regulator, are used by bacteria to adapt to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis and membrane transport. Response regulators share the common phosphoacceptor REC domain and differ output domains such as DNA, RNA, ligand, and protein-binding, or enzymatic domain. CpdR is a stand-alone REC protein. CckA is a sensor histidine kinase containing N-terminal PAS domains and a C-terminal REC domain. CpdR and CckA are components of a regulatory phosphorelay system (composed of CckA, ChpT, CtrA and CpdR) that controls Brucella abortus cell growth, division, and intracellular survival inside mammalian host cells. CckA autophosphorylates in the presence of ATP and transfers a phosphoryl group to the conserved aspartic acid residue on its C-terminal REC domain, which is relayed to the ChpT phosphotransferase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.60956e-41
NC_014774.1\|WP_013461922.1\|558732_559263_+\|peroxiredoxin	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.46936e-71

>NC_014774.1|WP_013461917.1|551710_554134_+|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLKDHLDTDASLGEICDNLTSIGLEVEGVDTRDSLAPFRIVEILSVQRHSNSQNLSVLQIDVGEQKTVQVVCGAPNVRVGLLGIWAPPGSCIPENHMTINVRKIRGIESMGMMCSEKELMLSDSCVGIIELPIDAPVGGRFSDYFGLSDPIIDIALTPNRSDCSGVRGIALDLVAAGLGKLKEIDAPVFSSSGSIPVEIQFDLDDARLCKGFAMCCVRGVRNTSSPKWMRQRLEAVGLRPISALVDITNYIAIDRGYPSHVFDSSKISGDITIRRARSGEKFIALNDKEYELSPDNVVVASDNCIESIAGIIGGKNACCDDDTTDVLVEVALWDSLNIAHSGHVLGISTDSRYRFERGVDLQGMLPILKYEVSLILSLCGGMASDIFVGKHEIYKPRTIEFINSEVKRLAGIEVPLKESLCILRNLGFDVIEKKGVWTVSVPSWRQDVEEKADLVEEILRIYGVDKIKGEPLSLTHLGKKRNLSLQQSRIRYSKRVLASRSMMELITWSFIPKKQSVLFGGGQPELELLNPISVEMSNMRTSLLPGLLKAVSRSIDRAIMDLAIFEVSHVYENDRPEGQKCMASGIRKGSSCMEGSGRFWSEQSVKKCRFVDVFDAKADALAVIEAFVSIDSLQIESGAPSWYHPKRSGTIKVNNNVVLGYFGEFHPEILDFFGLSNPICCFEVYLDYIPIPKNKPIASKKIINLPSFHPIRRDFAFIIDKTVPTATLINIVRRIDRQLIVDVRVFDVFEGKSLGEDKKSIALEVLIQPLKEAFCDEDVRALTERIIENVTKKSNAVLRSS
>NC_014774.1|WP_013461916.1|550597_551698_+|phenylalanine--tRNA-ligase-subunit-alpha
MVKFDCFDDDVEQLRSSILDSIDSASSIDCLNAIRASALGKKGSVSSLLKDLKNLNPDQVRSRGLVLNKLRDELSEKISSRKYFIRNQSIVAQISSPSIDVSLPVRSSPCHRGRIHPITQVVDEVTCIFMDMGFVLEEGPDIETDYYNFTALNFPDEHPARQMHDTFFMPGIVGGKHKLLRTHTSPVQIKIMEYQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSQSATIANLRWVLESFCKSFFEVESLEMRFRPSFFPFTEPSFEVDIRCSRSEGIIKFDEGAEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGIGLDRIAMLKYGMPDVRDFFGSDVRWIEHYGFSPLEIPPLFSYLK
>NC_014774.1|WP_013461915.1|550071_550428_+|50S-ribosomal-protein-L20
MTRVKRGVVSNAKHKKVLKLAKGFYGRRKNTIRTAKAAVDRSRQYAYRDRRVKKRDFRSLWIQRINAAVRLYDLNYSQFINGLQKAGITLDRRTLSELAIEKPGSFEKIVDVSKANLI
>NC_014774.1|WP_013461914.1|549810_550014_+|50S-ribosomal-protein-L35
MPKMKTNSSSKKRFSITASGKVKAQAAGKRHGMIKRSNKFIRNARGAMVLGAADAKKIIRNYLPNGL
>NC_014774.1|WP_143827795.1|549186_549636_+|translation-initiation-factor-IF-3
MADGQGVNEISTSEALKKAQEANLDLVEIDSSANPPICKMLDLRKLKYTMQKNAAEARKKQKSVDTKEVKLSPGIKSNDYEVKLRSIDGFLRGGCKVKVYVRFRGREMMYPDQGYNLLTKIKNHVSEISRVDYEPKFEGRQMIMILSPK
>NC_014774.1|WP_013461911.1|546934_548755_-|elongation-factor-4
MQNKPTPLSRIRNFSIVAHIDHGKSTLADRFIQYCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSENGQDYLLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDASQGVEAQTIANVYQAIDNNHELITVLNKADLPSADPERVKKQIEETIGINTDDSLLISAKTGEGIQQLLEKIIQQLPHPTSPEGENAPLKALLIDSWYNSYLGVMVLVRIINGKLTKGQTIRLMGTNAKYKVERIGVLTPKMVDIETLYPGEIGVMMASIKEVSHTRVGDTITDDDFPTTSALPGFKEIQPVVFCGLFPVDASQFENLRTAIKKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFDLDLIGTSPSVIYNLSMRDGSIIELSNPSDMPDITKISELKEPWISVTIITPTEYLGSILKLCQERRGIQIDMNHIENRTILAYELPLNEVIFDFYDRLKSVSRGYASFDYTVIDYRNGDLVKLTILVNDETVDALSILVHRSVAEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKDGKKRMRRFGKVDIPQNAFISILKSNNE
>NC_014774.1|WP_013461910.1|545851_546676_-|hypothetical-protein
MNLLFDMQLINKNRLRSLRQKDFSSHFLLDIVAKEISFRLNMINKTFDNAMELHGATGIVGRTCMKTQKISRMIRTEISTEFSTSDNTVLACPLEDIPSIPQPIDLILSPLTLHIINDTLGMFLKIKNTLKRGGVFLAAIPGVGTLRELRKSLLQAETEITGGASPRIIPFMDIKSAGALMQKAGFISPIIDQDNYTVYYKSMFHLMHDLRKMGMSNPLIHRSTTPPKKSLFTRAAEIYAEENSESTGNVTANFSIIYVIGWKSSASKEEKIVK
>NC_014774.1|WP_050780884.1|544113_545550_+|NTP/NDP-exchange-transporter
MWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPLKDSLVVPNMGAEVISFVKLWCVFPSAILFTIIYMKLSNILDSEKLFYIVVSFFVSFFVIFAFVLYPYRDFIHPSPQTIKIWVSSFPFFKWFLFLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIIIKLSKLTDALMIYYSMLTLILSSFLLMAIYRWMNVYVLTDPKQYSPRKGALKKKLKLSVSDSLKMALNSKYLGYIVLLVICYGTAINLVEGPWKAKVRELYPSQNDYAQFMGQFIQWTGIVTIVFMILGSNILKSVSWFTSAIITPLMILITGGGFFVFVIFENALLPLTEDIMKLTPLVLAVFLGALQNILSKATKYTMFDSTKEMAFIPLDDEFKIKGKAVVDVIGGRLAKSGGAVIQSFIFMFVPMATFSTIIPFLTGIFLFLMFIWMYVVTQLNKEYTQLLDKE
>NC_014774.1|WP_013461907.1|542890_543313_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MNIMPKKILLVVACAVFGSYEKVLLSCRPKNKSYAGFWEFPGGKIEDGETPEEALVRELSEELSIIVKPVDLIPLTFVSHSYDKFHLLMPFFSCHHFEGSPRSCEGQEIKWVSLDDVKNHSILPADQPLISFLQRYSHHI
>NC_014774.1|WP_044054282.1|541500_542724_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MSRSRVTPVPLPIKGVRLSTASLGIKYVGRDDVFLMLFDKPASVAGVFTRSRCPSAPVDFCRTNLPHGIARALVVNSGNANAFTGKRGRDAVHFIAQSLSDLISCQEDEVYVASTGIIGEFLDIGKFDGVFDKLLHNATDDAWLDSAKAMMTTDSYAKTAVRTVNIDGVKVTINGMAKGAGMIAPDMATTLAFVVTDIDISSPVLQILLSEGVEHSFNSITVDSDTSTSDTLMLFSTGTVSENVPPITSIDDQRLSTFRPVLFDILKDLALQVVCDGEGASKILEVTVKGAENATSAKQVAFSIANSPLVKTAFASGSIGWWGRIVMAIGKSGAFVDRDSISVWFRNIRIATNGEPEINFSQEDVHSIMKEECIPIVVDLGIGDGVHTVWTCDFSGEYVQFNSNCQS
>NC_014774.1|WP_013461918.1|554665_555700_+|porin
MKFKNIYLGSAAIIAVLSYTESFAVVHKSTVKNHKNAHYCEKGYQKYLSDHCLKISKYYEPSVSSLYVKGASPQYSYPLKTGVAVDYKTQTRLGKLQGSLKLKVYTPDLSTLRRVKNDSNMFTPSGTFENVNITLDELYLNLRGVQAGYYKPWSNEVSSVYDMAALNNDEANITSLSYQRSFGLVKAGLSADLLQQAAKKRGLGIGYMVSYVFGKLKSTVTGGYDTYNKHLAVRANVSARLSNCSSFDFGALWANGKNSYYDQSQSSIFAGYKVNVRDNISISPGAQYFWNKDKFTTNTKQNSWTAGVGVAYEFSKDTTVKLSTLYDSRPNKGVNVALAWKHGF
>NC_014774.1|WP_044054285.1|556400_557084_+|RlmE-family-RNA-methyltransferase
MVKLLGGSSRRGLIQKVKNNSCQESSHRWLSRHINDPYVQQAQLEGWRARSAYKLIQINEKHRILHPSRRIVDLGSAPGSWSQVAARMTAAKSNDIRIVAIDILDMEPILGVKFFKFDFLDLESWEFIHQAIGGNPDLVLSDMAYPTIGHRKTDHLRTMSLCEAATFFALEMLNEGGDFLVKTFQGGTTQDILCLLKKNFQKVIHIKPMASRAESVEMFLLAKGFKK
>NC_014774.1|WP_013461921.1|557584_557947_-|response-regulator
MNQKILLAEDDNDMRRFLIKALGNAGYEVISCNNGASAYDKIREEPFSLLLTDIVMPEMDGIELARKATELDPDLKVMFITGFAAVSLNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLAV
>NC_014774.1|WP_013461922.1|558732_559263_+|peroxiredoxin
MIDFKIPHVIFRTRVKKTALDGSSSFEWKDVSTEELFSKKKVFLCALPGAFTPTCSNSQLPGFEKIYDDLISEGIEDVYCLSVNDSFVMNAWGKSLGIKNVKLLPDGSGEFTRKMGMLVYKDNLGFGVRSWRYGALIDDMIIQHWFIEKGFSDNCPTDPYEISSPENVLKFIRASK
>NC_014774.1|WP_013461923.1|560166_560811_+|ComF-family-protein
MIDRRFCLCAFCWSKINFISSATQNLENIDNIINEKPLELLRQDLRLIPIRSVVVYCDISCVLVRLLKYHDRTDLAIMMAQWMFRVGKELVMDSDLIVAIPLHRFRLIYRRYNQSSELARLISQYGKKPFVPGILVRSRFTRQQVELSLSARKRNLHNAFHVPQYAQKYIAGFKILLIDDVYTTGATAQYAAIALKKAGAKSISILTFSRSLKN
>NC_014774.1|WP_013461926.1|561717_562746_-|aspartate-semialdehyde-dehydrogenase
MTFKIAVVGATGNVGREMLNIIYERGFPISKIVALASKRSVGIKLPFGNKTIEVEDVNSYDFSKTDICLMSAGHAFSTKMSPKIAEKGCVVIDNSSAWRYDSDVPLIVPEVNPETISLASRKNIIANPNCSTIQLVVVLKPLHDIAMIKRVVVSTYQSVSGAGKKGIDELLIQTKSFSENKKIENHVFTKDIAFNIIPHIDIFMDDGSTKEEWKVVAETQKILDPNIKISCTAARVPVFIGHSESVNIEFENNITVEKARTVLSKSSGCVVIDKPEKNEYATPIECVNQNPVFVSRIRKDMTVKSGLNLWIVANNLRKGAALNAVQIAELMIKNTNKNTTLP
>NC_014774.1|WP_013461927.1|562967_565490_-|type-I-DNA-topoisomerase
MNVIIVESPAKAKTISKYLGPDYKVLSSFGHVRDLPAKKGSVLPEKNFEMLWETDKSSQKHLENIISAVKSSTLLILATDPDREGEAISWHVLDILRQRNLIGERKIKRVSFNAITKKVVLNAMENTRDLNLDLVNAYLARRALDYLVGFNLSPILWRKLPGARSAGRVQSVALRLICHRENQIECFVSEEYWLLSVLLETPRGDKFIARLVDFNGQRIEKTSIGNKKEADKLISFLEKATYIVKNTETKPIKRNPWPAFTTSTLQQAASSRLGFSPSYTMRIAQKLYEGIDVNGEVVGLITYMRTDSVHLSLDALEEVRRSISSNFGNSYLPDKPRIYSVKAKNAQEAHEAIRPNDFNFLPSEMKKFLDSDQFQLYNLIWKRSVASQMASAEFERTTISIDATYEDQIAHLRTVGSCLRFDGFLKVWENQNDQENNSDEDKLLPCINKNEKLLAKETNASQHFTEAPLRYSESSLIKKMEELGIGRPSTYAAILETLSKRRYIVIEKRKLFPQNTGRIVTAFLENFFSRYVEYDFTADLEEKLDKISSGKLDWKEVLHEFWKEFIEKIDSTKELRTSNVLDILNDTLSSVIFPAKDNNEDSRTCPSCQKNPLSIKLSSKYGAFVGCTNYPECKYTRQLTTSNQQYIEENLEPLLLGDDPETKEPITLRSGRFGFYVQRGDGKDAKRCGLPKNWDRESIDYDKALSLISLPREIGIHPETQKSIIASMGKYGCYLKHDGHHTKLESIEQVLTINLDQAISCMIQKNKKEKSSRTSTKNQGHVIGIHPEGGSITIHRGRYGPYLNWGKINASIPNNENPDTIDLENALKIFETKIKGKKKS
>NC_014774.1|WP_013461929.1|566025_566922_-|DNA-protecting-protein-DprA
MTKINPQKRGVYLTDDQKISWLRLIRSDNIGPATFRDMINYFGSAEQALEMIPELSQRGDINKKIRIYSKESAEKELEIADAFGAQFVALSEPNYPPALRYIDCPPPLLAIKGNIKAVSGKPSVGIVGTRHPSISGIKFTEKIAREIGSAGYTIVSGLALGIDSAAHRATLKTGTITVMAGGLDCLYPPENRSLLEEIWHEGIAISEMPFGWEPRAYDFPRRNRLIVGIGLGLIVVEAAKRSGSLITSRIAGECGRLVFSVPGSPLDPRCEGTNQREIGFFCSWFTLRPSLRRNKPAD
>NC_014774.1|WP_013461930.1|566924_567569_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MDNLPFFSYEFFAKITAIILGYMIGSIPFGLLLTRVCGFNDIRSIGSGNIGATNVLRTGNKKLAFITLLFDSIKATATIIVVSMLFNDNVGALAGLAAFLGHIFPVYLKFKGGKGVSTYIGVLIALKPEMVIFFAIIWILFALITRYSSIASLFATLIITLVLWIIHPGINVPIIFTFMTTIVVWKHIENIKRLISGSETEIIFKKYSKKVLKK
>NC_014774.1|WP_013461931.1|567576_568872_-|amidohydrolase-family-protein
MTSFVLNNIRIIDPSRDIDEIGAIIVENGIIIASGSDVLNQELPTSAQVRNCKGLVAVPGLIDARVTLEGSPEKYANNIVKTSKEAAAGGITSIILTPFSVSTAMDEYTFIKYAFKKIQENSLVNVYPTACLTCKMEGKKINEMRLLQEQGAVSFVHNSRSIYDTQVLLDSMKYAHMLNAIVSLDTHDYFLGSKGTMNESMLADCLGLEGIPAISETIPLARDLLVAQHTGGHYHASAISTPQSISILNYAKENKIKATCGISINNLALNENDVGMYNSFRKVLPPLRSEEERVGMVESLASGNIDIIVSDHTPHHIDTKLLPFAEATFGSIGLETMLSAALRLFHGQQISLKKLIQSMSTRPAQIFNIPGGTLRAGVAADIALIDLNHQWIVKSDDMLSSYRNTVFDKEYFTGRVVETYVSGECIYKLES

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Crispr_ID: NC_014774_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014774_4

611047-611140

Orphan

Consensus_repeat	Method
TCCTAGCGTAGATTCTTTTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014774_4

>merge|NC_014774|4|611047-611140|CRISPRCasFinder
TCCTAGCGTAGATTCTTTTGAAGACTGATTATCATTTAAAGGTTCTCTTTAATATTTGAGCTATCTCTGCTCCTAGCGTAGATTCTTTTGAAGA

>NC_014774|4|4|611047-611140|CRISPRCasFinder
TCCTAGCGTAGATTCTTTTGAAGA	CTGATTATCATTTAAAGGTTCTCTTTAATATTTGAGCTATCTCTGC
TCCTAGCGTAGATTCTTTTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014774.1\|WP_013461973.1\|605084_606056_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_014774.1\|WP_013461977.1\|609124_609292_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461993.1\|627605_628754_+\|DUF2336-domain-containing-protein	unknown	unknown	gnl\|CDD\|370815
NC_014774.1\|WP_143827796.1\|609957_610158_-\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461986.1\|612933_613926_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|183621
NC_014774.1\|WP_013461976.1\|607804_608749_+\|cation-transporter	unknown	unknown	gnl\|CDD\|226474
NC_014774.1\|WP_044054093.1\|602637_603147_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NC_014774.1\|WP_013461988.1\|620726_622607_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NC_014774.1\|WP_013461992.1\|626794_627385_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_014774.1\|WP_013461991.1\|625577_626681_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_014774.1\|WP_013461989.1\|622603_623758_-\|DUF475-domain-containing-protein	unknown	unknown	gnl\|CDD\|237583
NC_014774.1\|WP_013461995.1\|630253_632299_-\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NC_014774.1\|WP_013461990.1\|624112_625315_-\|pyrophosphate--fructose-6-phosphate-1-phosphotransferase	unknown	unknown	gnl\|CDD\|180620
NC_014774.1\|WP_013461975.1\|607026_607647_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_014774.1\|WP_013461994.1\|629009_630095_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_014774.1\|WP_143827766.1\|609746_609995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223562
NC_014774.1\|WP_013461971.1\|603374_603863_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376863
NC_014774.1\|WP_193345358.1\|604005_605088_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_014774.1\|WP_013461987.1\|619554_620601_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NC_014774.1\|WP_013461974.1\|606128_606461_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857

Protein	Function_ID	Function_description	E-value
NC_014774.1\|WP_013461973.1\|605084_606056_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NC_014774.1\|WP_013461992.1\|626794_627385_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	8.39572e-85
NC_014774.1\|WP_013461993.1\|627605_628754_+\|DUF2336-domain-containing-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	8.88359e-39
NC_014774.1\|WP_013461990.1\|624112_625315_-\|pyrophosphate--fructose-6-phosphate-1-phosphotransferase	gnl\|CDD\|180620	PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated.	0
NC_014774.1\|WP_013461987.1\|619554_620601_+\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	5.1944e-133
NC_014774.1\|WP_013461976.1\|607804_608749_+\|cation-transporter	gnl\|CDD\|226474	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.16903e-91
NC_014774.1\|WP_044054093.1\|602637_603147_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	1.32e-09
NC_014774.1\|WP_013461988.1\|620726_622607_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NC_014774.1\|WP_013461991.1\|625577_626681_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_014774.1\|WP_013461989.1\|622603_623758_-\|DUF475-domain-containing-protein	gnl\|CDD\|237583	PRK14013, PRK14013, hypothetical protein; Provisional.	7.31659e-140
NC_014774.1\|WP_013461995.1\|630253_632299_-\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NC_014774.1\|WP_013461975.1\|607026_607647_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	2.67091e-88
NC_014774.1\|WP_013461994.1\|629009_630095_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.51836e-29
NC_014774.1\|WP_143827766.1\|609746_609995_-\|hypothetical-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0.000168098
NC_014774.1\|WP_013461971.1\|603374_603863_+\|hypothetical-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	1.6093e-05
NC_014774.1\|WP_193345358.1\|604005_605088_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	9.59188e-143
NC_014774.1\|WP_013461986.1\|612933_613926_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|183621	PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	1.30831e-180
NC_014774.1\|WP_013461974.1\|606128_606461_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	5.15617e-38

>NC_014774.1|WP_143827796.1|609957_610158_-|hypothetical-protein
MNMKKLSLISTVAMLSTAISLGGCNKTKSKAVESANKVAEVAKAAKPAGESKAADDARKAEETKKS
>NC_014774.1|WP_143827766.1|609746_609995_-|hypothetical-protein
MMQEKLKKQRKAEEKRIADEAKAADDARKAEEKRKAEEKRIADEAKAKPAEAPKLVGVAKEEDDDTSPEIAAITGNSVTKAN
>NC_014774.1|WP_013461977.1|609124_609292_+|hypothetical-protein
MCGGDYRQQKGIEEIFNLLNTSKGLASFIKTSGAITASLSAIIYALYNLKNWIKG
>NC_014774.1|WP_013461976.1|607804_608749_+|cation-transporter
MQDYKARSKSEERLLKLSIGVTILMASANLIVGIITDSSSIVFDGFYSYLDAGMTTLSLLVVRLISRDTLEVDNGERKRYFQFGFWHFEPMVLAFNSIVLICVTFYEFIISILNIISGGHNIDFEKAVLYSIVASIICFIMGLYERRCNKHIKSDFIALDAKAWIVAGLLLLAIVFAFICGILLKSSAYHWIVFYVDSIVLMGICLFIIPSAIYTMKCATFEIFQMTPPELDLQVREVLYPIVIRHGFLDFYTYVTKTGRARVIEIYLIVPLHYPIKRISSLDAIRYEIGEAIGGLGEERWLTISFTSQKRWAI
>NC_014774.1|WP_013461975.1|607026_607647_-|superoxide-dismutase
MAFELPNLPYDYDALSPYMSPETLKYHHGVHHKTYADNALKLASDAEMLHSPLEEIIIKSYGSNAGLFNNASQYYNHNLFWLCMKKNGGGEKIPQVLSDAINSNFGSYEKFKSDFITAACTQFASGWTWLSVKNGKLEISKTQNAENPLINGATPILGIDVWEHAYYLDFQYKRSSYVENFVSHLINWEYVHERYESTILTQKSSL
>NC_014774.1|WP_013461974.1|606128_606461_+|integration-host-factor-subunit-alpha
MNKTITRSDLAKSISKNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKGPRVGRNLQTNQEVMIGSRRVMVFKASDVLKKRIMDELDNLECKEEDLVQQ
>NC_014774.1|WP_013461973.1|605084_606056_+|ketoacyl-ACP-synthase-III
MIRSVVRGFGSSLPKKVLSNADLESIIDTSDDWIRRRVGISQRHIAGKGETTASLGEAAARDALYQAKMNADDIDLIILATSTPDQTFPATAVNVQNRLGMKKGFAFDIQAVCSGFLYAITTADAYIRSGVVQRVMVIGADTFSRIIDWSDRSTCILFGDGAGSLILEATQVQSSDSDIGILSTYLYSDGSHIEKLHVDGGPSTSGTVGYVRMKGREVFKYAVESAAELIKKVLDSSNLTIADIDWFVPHQANLRIINSISERMNISSDKVIVTVDIHGNTSAASIPLALSVAVKEGRIKKGDCLLLEAMGGGFTSGAVLLRW
>NC_014774.1|WP_193345358.1|604005_605088_+|phosphate-acyltransferase-PlsX
MSANCIISLDLMGGDLGAKDLIPGASRFLEANPEVRFLMYGDEKVCLPILDSYAKLKQNSSFHHCDVSIAMDERPADALRRGRNVSSMWCAIEAVKKKKATAVVTAGNTGALIAMARLCLSKISGVDRPSLAAFWPTFQGKCIILDVGATIGSTVSHMIQLSILGSVLARSALGIECPSVGLLNVGTEETKGHNVLQESGRLLREEYCGDFKYKGFVEASDISKGLVDVVVTEGFSGNIAIKSAEGAVRHISGVLKKSLNRTLFSRIGCLLIRRALQEVKEGFDPGNFNGGVLLGVDGLVVKGHGSSNAKSIFNVLGIARNMSRNGFIDMVKVDMQRMRDNSLNVTGKTILSDYGRKQKV
>NC_014774.1|WP_013461971.1|603374_603863_+|hypothetical-protein
MAKTDGKNFSYCVSIQSVPINMKIEANRLDCQKLAEEWDVLSVDNLCADVKLFSWKKGGIRLSGKVCATIVQACVITLDPLLLKIEESLGCIFVPSSSKFLYPNGDTSGKKSVVEVRELDILPFSKDGIIDIGAVVADFIAVAIDPYPKKEGILFSDIYDNN
>NC_014774.1|WP_044054093.1|602637_603147_-|outer-membrane-protein-assembly-factor-BamE
MRRVLLLNNFLFKHLFLNKVILIALLLTISMGNLHVSHGEDNSVGGVVLDQALLSLIHRQSSREHVIQTLGSPSFTIFDPHNYGMQSFYYVSQKKKIFPFHFLRPTITNRTVLKIVFGKEGLVSKISIQSLKDRRFNPNQHETTVPITKESDFFDRLLNPDKKPVKLGS
>NC_014774.1|WP_013461986.1|612933_613926_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MNNHPPRKPITRIISEAYIPELPNYYPGKVRENYFLNDGTRITIATDRLSAFDRNITCIPHKGELLNKITQYWFQHTSDICENHALDYPDPNVLVGKQLQMFPIELIVRGYLAGNTKTSLLTFYKKGQRTIYGHSLPDNMHDNQKLPHTIITPTTKSSGPNFEHDKPISPHEIIQKGILTQNQWETISSYALALFERGCKLASERDLILVDSKYEFGLDKKNNIVLADEIHTPDSSRYWKAETYEKSLKEGTSPEGLDKDLIRNWILTHCNPYKDNIPNIPENILLHISQTYMTAYERITGLKFIGENSDFSPLHRIRNNLEQYINRCCT
>NC_014774.1|WP_013461987.1|619554_620601_+|P-loop-NTPase
MNQNIEQQILDALKILYIPGETINIVDMKRLSNICIVQNTAYLSITVPHNLAQQLQSLRLNAQQIVQNIPQIKNAVVTLTENKSKPILDPIIENKLKINALIAIASGKGGVGKSTTAVNLACALKNKNKNVAILDADIYGPSIPKLLQLSGKAEILEKKILKPMENYGIKIMSMASLVDDNVAMIWRGPMVQSAIMHMFQNVSWGQLDFLLIDMPPGTGDAHLTVAQKIPLSGVVIVSTPQDLALIDVKRAINMYQKMKVPIIGIIENMSYFVTSDTGKRYDLFGNGGVRAEAEKMGIPFLESIPFDMDVRILSDLGIPIVIDNPNSVVSKMYQKISDRIQEYLLSKI
>NC_014774.1|WP_013461988.1|620726_622607_+|potassium-transporter-Kup
MNTCREDLQKNNRNPFYLMFESIGVVYGDIGTSVLYAFKEALKTMNHTSLVGRVEVIGLVSLMIWILTIIVTIKYVLLLLRADNGGEGGILSLLALLLKKIPQHSNILIVLGLIGFALFIGDTMVTPALSVLSAVEGIRYIMPELDGFIILIALGILILLFMIQSHGTQGIACFFSPIMVIWLLMITISGLIHISDDWGILAAFNPLYALYMVVGKGSVSLLVLASVFLTITGAEALYADLGHFGRKPIQYAWMIIFPALTINYLGQGALVLANPEAIADPFYMMFAGWFLPFAILMATCATVIASQAVITGTFSLTRQAIHLGFLPPMKIFFTSETLKGQMFLPSINLFMFLGVMVFVIGFKNSESLVSAYGISVSGTMVISTIMFSVFSRVYWKWKLSKVIIFILPLLLIEMTFLGANLLRFFDRGYVPLLIATLFIVIMWTWIRGTNLLSTLTRHTDIPVQSFILSIEKSSQKVPGTAIFLTSDSEAVPDALLQNIKHNHVLHEQNIILTINTANQPRLPKEERFICEKISESFSRIQLFFGYMEEQNVSQALADLRNNGLKFEIMNTSFYLGRRKLVPISRSGMPNWQDNLFIMMFAYAEDPSDYFYLPANRVVEIVSHVNI
>NC_014774.1|WP_013461989.1|622603_623758_-|DUF475-domain-containing-protein
MKINPFQIDIIHHFRWAILVTIIGILLSIGIGWETSHTLSGTSEILYICIILAIIEISLSCDNAILNAKNIQKMSPLWQRRFLTWGIVIAVFGMRIVFPIIIVCIVATINPIEAVKIAIFSPQDYLKIISDAHIPIAGFGGTFLMMVSLTFFFNRNKNIHWINFLEIPMSYLSRIRGIKFFLVLLLIIGISCILSIRDIYILIFSSTFALMTFYAINFLESILSGDNQTKSVAQKKHGLSLFLYLEIIDASLSFDGVISSFAITKNFFIIIIGLTIGAVYVRSMTVLMLKKGMLQKYKYLEHGSFYSIFVLSIVMFLQTVINVPEIFTGTSSVLLIILSIYSSIKNDSRNPKQKNKIDFFIKLYAIKYLFYLSNRYNVFLLYYA
>NC_014774.1|WP_013461990.1|624112_625315_-|pyrophosphate--fructose-6-phosphate-1-phosphotransferase
MVKHKVAFLTAGGIAPCLSSVIGMLISRYNEILPEAELIAYRSGYQGLLLDDKIEISHDMRQNAEKLLSYGGSPIGNSRIKLTNINDCIKRNLIKENENPLEVAAHNLMKNNVTILHTIGGDDTNTTACDLLNYLKEKGYNITVVGLPKTIDNDIVPIHQSLGALTAAKVSAQFFDNISNERSASPKSLIIHEVMGRNCGWLTAYAARSYLDMIRDRDYVNGLIFSPEFKAIDGIYLPEMSFNLEEETERLTMIMEKKGSVALFVSEGACRDVIVSDRLSSGDKIQRDSFGHILLDKINVGSWFSDKFANLIKAERSIVQKSGYFARSAASSEEDLILIRKMVILAVDGAIAGISGVTGEDERKNNLLRIIEFENILGGKIFDIKTPWFSDILQHTGQKY
>NC_014774.1|WP_013461991.1|625577_626681_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTRTATAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAKSKDLVPTSMSFIDIAGIVRGASKGEGLGNQFLANIREVDAIIHVLRCFDDENIIHVEGRINPINDIETIETELMLSDLERLERLFEKNKKHKNHKSENIQLTQSIISSSLRLIEEGKTVRSLLQSLDSDALSIFKSFNLLTAKPMLYICNVSESDCKKGNMHTEAIQKLATQQNAEMIIISAAIEEEISQLPEEERALFMEDLGVSVSGLELLIRSGYRLLDLITYFTVGPKETRAWTILRGTNAQKAAGFIHSDFERGFIRALTISYEDYIAMGGERAAKESGKARDEGKDYIVKDGDIMHFRFNV
>NC_014774.1|WP_013461992.1|626794_627385_-|aminoacyl-tRNA-hydrolase
MFIVAGLGNPGNEYSENRHNIGFMCVDRIHSFHSFPSWKKKFSAEISEKHLDDIRIILLKPQTFMNLSGKSLIEVINFYKLSLQNCLIIHDELDLSLGILRLKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPQNKEYVIKHVLSDFYPSEQSVLFPILDNIARHIPLLVKKEDDLFLNYVVQRQELSSKIISL
>NC_014774.1|WP_013461993.1|627605_628754_+|DUF2336-domain-containing-protein
MSVQSFIKWAKTAKLQERICIARILGRTWCMEELLADEKDSLVLAMTHLLDDPSSQVRLSLARAIALSNTAPKHVILALSEDHPDVSGTIILHSPVLNDNDLIDLIARGGNLTCIFIASRYQLSHVVAENLIEIGCIDNIIALLENKSACLSSVLLMRIAKLFSHNPYIRNLLSLRSDLSLKARYLLIKNVCNSLCQSKIMNTVISFRRIKVLSEENIRVGILEMVSNVNDSQNISELVEILQEEGQLTPVLLIYAIVIGSIQFVSIILAKISEYNQDRVYSILSTGGFHVVRSLYELVGLTSDISEIFVEATMIWREIAVDSVVINPSIIVEKLLERVRKRNIRGFPKEELLEMIERIHLDVNRRFVRSIENKSSRFIVAA
>NC_014774.1|WP_013461994.1|629009_630095_-|AI-2E-family-transporter
MREIILNPQRIMRWTIIFIVLACIYFLKGFFAPVLTALIIGFASWPIYSLFISKEEKSFTLEATIATLTVILLFIIPLLFFSYYTTLEIKNLASYVALVNEKGIPKPSWLSHIPGGGVWAGLWTKYLSPPQSLMTLTENILTTNGTQFTLKFVSYFSNCIFDYLLSIIFMLIALFFFYRDGLSMSLQLDSLGGYLLPVYWEKISRIIPRVIRSTFVGMTVIAIGEGLVLGSAYWIAGVPSYTALGVITAIMAMIPGGAPVSFTVVSIYLVIKGSITNAILLFSWGAIELFIVDKTLRPFLVGGPIRLPFLPTFFGLVGGVRTMGLLGLFIGPVIMALMTVIWKESILAIRENNLKRKPTKT
>NC_014774.1|WP_013461995.1|630253_632299_-|DNA-topoisomerase-IV-subunit-B
MDDSIDLFSTLPPQNKESSKKFEDSDKLDSTNIHKNHTVSDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGHADLIEVSLDNNGFLTVVDNGRGIPVDNHPKFPDKSTLEIIMTKLHAGGKFDSSTYEISGGLHGVGISVVNALSDELEVTVMRQNTVFSQRFSRGIPLGPLEKIGKVRNKRGTSIKFRPDPKIFGENASFNASRLVKITKSKAYLSGRVKTYWSCDKQIAEKYNIPEKTEFYFPGGLKTYLQTRLKNRSLISSEIFTGKTERKGSNPGSIEWAIAWCEEDPEITSYCNTILTDEGGSHESGLRVALTRGIRKYAELTQNKRAALITSDDIMISAVGILSVFIPEPEFAGQTKTKLVSFDAQRIVENALRDPFDHYLVKNPVETTKLLEWVIERSEERLRRRKQKEVNRKTAMRKLRLPGKLADCSQNMAKGTELFIVEGDSAGGSAKQARNRNNQAILPLRGKILNVASAGLEKIRTSQQISDLIQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYGLIEQKHLFLVSPPLFRITQGSRSIYARDEEHKQEILKDFREKGRGKIEINRFKGLGEMLASQLKETAMDATKRTLLRVELCSDQESFEKTKDSIHKLMGTKADERFKFIQERATFVD

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Crispr_ID: NC_014774_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014774_5

1242882-1242980

Orphan

Consensus_repeat	Method
CACCTGTAGATTTAAAGCCTCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014774_5

>merge|NC_014774|5|1242882-1242980|CRISPRCasFinder
CACCTGTAGATTTAAAGCCTCTTGGTGCTAGAGTAGAAAAGGTCGAAGTACGTGTTGGTGCTATTGAGAACAAATCACCTGTAGATTTAAAGCCTCTTG

>NC_014774|5|5|1242882-1242980|CRISPRCasFinder
CACCTGTAGATTTAAAGCCTCTTG	GTGCTAGAGTAGAAAAGGTCGAAGTACGTGTTGGTGCTATTGAGAACAAAT
CACCTGTAGATTTAAAGCCTCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014774.1\|WP_013461606.1\|1240640_1240814_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461618.1\|1247941_1248328_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_143827790.1\|1237060_1237678_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
NC_014774.1\|WP_013462562.1\|1239486_1240272_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|226144
NC_014774.1\|WP_013461627.1\|1255592_1255976_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|184640
NC_014774.1\|WP_013462570.1\|1251902_1253930_+\|DNA-polymerase	unknown	unknown	gnl\|CDD\|176479
NC_014774.1\|WP_013462557.1\|1236170_1236803_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_014774.1\|WP_013462566.1\|1248880_1250047_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NC_014774.1\|WP_044054203.1\|1241167_1241908_+\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NC_014774.1\|WP_193345370.1\|1250117_1250330_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_014774.1\|WP_013462568.1\|1250443_1251238_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|226144
NC_014774.1\|WP_013461625.1\|1253926_1254232_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NC_014774.1\|WP_143827761.1\|1247653_1247887_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013462561.1\|1239126_1239342_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013462560.1\|1238740_1239094_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013462571.1\|1254219_1255590_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350771
NC_014774.1\|WP_143827789.1\|1234993_1235239_-\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013461604.1\|1240291_1240546_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013462563.1\|1243588_1244017_+\|hypothetical-protein	unknown	unknown	unknown
NC_014774.1\|WP_013462559.1\|1237819_1238575_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_014774.1\|WP_143827790.1\|1237060_1237678_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	0.000571171
NC_014774.1\|WP_013461625.1\|1253926_1254232_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	8.25829e-08
NC_014774.1\|WP_013461627.1\|1255592_1255976_+\|DNA-ligase	gnl\|CDD\|184640	PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional.	0.000819917
NC_014774.1\|WP_013462570.1\|1251902_1253930_+\|DNA-polymerase	gnl\|CDD\|176479	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used to search for protein signatures. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains.	5.68216e-91
NC_014774.1\|WP_013462557.1\|1236170_1236803_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.40659e-12
NC_014774.1\|WP_013462566.1\|1248880_1250047_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	9.66651e-85
NC_014774.1\|WP_013462568.1\|1250443_1251238_+\|phage-repressor-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	1.49878e-47
NC_014774.1\|WP_013462562.1\|1239486_1240272_+\|phage-repressor-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	1.17924e-41
NC_014774.1\|WP_013462559.1\|1237819_1238575_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.34824e-11
NC_014774.1\|WP_193345370.1\|1250117_1250330_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.21663e-10
NC_014774.1\|WP_013462571.1\|1254219_1255590_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350771	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins. Proteins belonging to the SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprise a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. The bacterial SNF2 present in this family are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.75778e-89
NC_014774.1\|WP_044054203.1\|1241167_1241908_+\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	1.59546e-40

>NC_014774.1|WP_044054203.1|1241167_1241908_+|nucleotide-binding-protein
MKKYKLTFHGSIEELKDLVKKEELQGTWELADSIKPHRFVSNKGGILLWYPSTNSVVFQGKSTDELLHVNLKKAIEQSRISNSNSRIAHSERVFIVHGHDMDSKDQLELILYKLGIENQFILQNTAGNGITIIEELEKEIVKTQNRFGIVLLTPDDYGYSSTEGIESRQPRARQNVILEMGMLLSSLGRENVVILQKQHLEKPSDISGIIYLPFNEHVKDIAHKLIQRLQHSGFKIDNNDIANALS
>NC_014774.1|WP_013461606.1|1240640_1240814_+|hypothetical-protein
MISISFNHFVVIVCIIVALACVGGLIYDHLKVKRRRKPVKLSFRNAKIPRSKKRKKK
>NC_014774.1|WP_013461604.1|1240291_1240546_+|hypothetical-protein
MLSPKLKYYTPTEIGEMLTPKLTVPQVNYMLVQDGFQLEDKHDDPHKPMWSKLVADQIQYAINATIIAYIADGMREDEIEAERN
>NC_014774.1|WP_013462562.1|1239486_1240272_+|phage-repressor-protein
MSNIIPFEFESNKIRTVVDKDNTILFVAKDIAEALGYKNSNEAVNEHCKGVVKRYPLKTDGGIQKVRVILESDVYRLIVKSKLPSAEKFERWVFEEVLPTLRKTGSYSINPPKPQVFITGGLLKELRLLTDNHGNLMRKAGIDENQILIASSRVMESVLGVNPANTLDIPTPNNSQYYTATALGEQLPVKLSGREINKRLVRLGFLLVEHEPSGKRRNILTTKGKELGGRVFDSGKKHSDGSIVQSIKWQENILDILKANH
>NC_014774.1|WP_013462561.1|1239126_1239342_+|hypothetical-protein
MKTKTFLIASIIATSGLLAGCNLADEPKKLNPDQICDAICKLNLQEQQELQSKVDQKYEDHLKTGTKISSD
>NC_014774.1|WP_013462560.1|1238740_1239094_+|hypothetical-protein
MTTEVQEQFKKHEELELNKEDMFEKFKEHYLNRDLSYILGTDIQRDLYNEITVQMNPDYSGLGIRAMIKDKILDDMVEAFEKFCSFDRSDFADEIDDFADDLIQENFEIEVRFNTPN
>NC_014774.1|WP_013462559.1|1237819_1238575_-|helix-turn-helix-transcriptional-regulator
MDKELKNNLNWKEIGQRFRALRKQHGFDQTELVSMSGRRGNVARFEAGLAPASTNYALFLRNTFGASFDWLYDGVENLRSERDRTEKKIFNPHAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKRALNKTLDWIYFGDECIGTRNRVRPSVTTKPTIPLKQLKKELKEEAISYIKNMDERDLAMLTTRLRMEQKHNATLSTSTTKDSQLNSTQLNSTQLNSRSHQKKQKSSE
>NC_014774.1|WP_143827790.1|1237060_1237678_-|cell-envelope-integrity-protein-TolA
MTIMTILISFWKRDKKQAIKDTMPYLLLASFTNFLTVGSLTAISIFCWVSFTGDFPSSHFYHCIIAIWFIKFMAEGFMYPAKEWAKQQEENRKQQEKNRKQQEEDRRQQEEDRIIEGLTRITYVYSEVSVWSTYSNAKNIPKYIEEKINFIESFFNSLGVSPLSQALETKHVHDYLEHVIVLRDSITTGSIESAEKFRIDFNKSF
>NC_014774.1|WP_013462557.1|1236170_1236803_-|helix-turn-helix-domain-containing-protein
MEKELENTLDWQQIGQRFRDLRERYGYKRSDIIKKTDDQGGAVYKYEAGVQPASTNYALFLRNEFGASFDWLYDGVEAKIKSSDRIKKRLINPIEIGERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGISAPEIKTALKIKRALGKPLDWIYFGDEEIVPKKSRLRAKQSNFHQNQRKSQGCSRRFTQLFTIFWCVGWYRGSKNLRL
>NC_014774.1|WP_143827789.1|1234993_1235239_-|hypothetical-protein
MAVQGLAVSVPLQGLAAVQGENQMVLMMNKPKANQINTSQRLAFERFNIGLLHRSLSSARNQISTSRMAYLVILYFDLKVS
>NC_014774.1|WP_013462563.1|1243588_1244017_+|hypothetical-protein
MTENNTSIDINSQAVHLHLKMHQDIIKRMALNSLFIKTCCISLLFLFLFITTNVTLSGFTCLLLTMAFATIDTMYLALERGFRASYNNFVNKLHSNTLQKEDLFILAPERISFWDTAKSFSVCLFYVAPLCFYVFISYIAPP
>NC_014774.1|WP_143827761.1|1247653_1247887_+|hypothetical-protein
MRRQRMADFDPLIVEEVLGAYYLFKAVEQVDKAEYVMDSISEELLKARSRLLSEGVERLGELAHHVEDVIKSEEIPK
>NC_014774.1|WP_013461618.1|1247941_1248328_+|hypothetical-protein
MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRDLQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKESWEEPEKEPEEEPREHPDQEHADAYYADQI
>NC_014774.1|WP_013462566.1|1248880_1250047_+|DUF2800-domain-containing-protein
MTRHAFLSASSSHRWLKCPIAPTLESKIPQTTSSYALEGTFAHNLLAHCLEKGVDAETFANRKITFENDTRIVDAEMASSVQMACEYVRSFSGNLLSETEVPLEPFTTEKGATGTADIIIFNNKHWVIADFKYGAGVPVNPEHNPQLMLYALGALHQYGDIFGSPETVTLTIIQPRIRAGSPLQEWTISSEELREKAKEFQAKGKLALSLKGKRSITLEHYGVDEDACRFCRAKTRCPALSRHVLLETIRDPKSGYEVDLSKAYSSLPLIEQYIKSLKEEVFKRLSEGEEVKGYQLVEGRKGNRTFKDIEQATEYLTGVLGDKAFKKILLSPKEVEQFRKDQTLSSDVWEELQELITRGDGKPVIAPRDIPPVPRIQKAEISDFASLD
>NC_014774.1|WP_193345370.1|1250117_1250330_+|Rha-family-transcriptional-regulator
MQEINRASNIKTMSSREIAKLTGKEHKHVLRDIENILKDAEIDQSKFGHIYSHCANPLKRRVTDDLGRYV
>NC_014774.1|WP_013462568.1|1250443_1251238_+|phage-repressor-protein
MSNINIIPFEFESNRIRTVVDEDNTILFVAKDIAEALGYENSSKAINDHCKGVTKRYPIVDSLGRTQKVRVILESDVYRLMVKSKLPSAEKFERWVFEEVLPTLRKTGSYSIKPQKLPSATTIMRFHKHLEVLAKQAGLKDNQLLLKVNRGVTKITGVDQLEVMDIKHLLSPDNDEYLTPTAIGELLNPVIKAKALNSWMTYLGLQISKHTGKGYIPTPKGEELGGKMCDVPLQHVEGSTQSLKWNPKVIIPYLQKLIGNHQTH
>NC_014774.1|WP_013462570.1|1251902_1253930_+|DNA-polymerase
MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKHLKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPETLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPLSENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDLLNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVSPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKGLPLKAEGYEAVRYRK
>NC_014774.1|WP_013461625.1|1253926_1254232_+|VRR-NUC-domain-containing-protein
MRGLSHQQSEHEIEKRLVKGVQQLDCWVRKASFVSHRGCPDRLIITPQGRLWWIEVKQPSGRLSPQQKIEIEELLRRGQRVKVLFSAEEVDNFLKELACSC
>NC_014774.1|WP_013462571.1|1254219_1255590_+|DEAD/DEAH-box-helicase
MLVLESHQIKMVHWMLQNKRCAVWASMGSGKTVSVLFALSYIQMLDPRPALIIAPLRVAQSVWSAEVKRWSAFKNMTVAVATGTEKQRIQALNQPASLVVTNFENVPWLVKLLGNQWNFSTIIVDESTKLKAFRIRQGGKMCKALARPAWQTEHFIELTGTPSPNGLIDLWGQLWFLDKGKRLGMTYDCFLQKWFNTHRVGAHVSAVKHTPKPHAQQEIEAKLSDRCLSLNIADYHDISKPICTIHKIALAQSTLKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDESHSWKEVHNAKIEALKAIVEEAGRSPVLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCAHGLNLQYGGNILVFFSLWWDLETHQQMIERIGTLRQKQAGFKRAVFIHYLIAEHTIDELILKRLQTKATVQEILLNALKKGN
>NC_014774.1|WP_013461627.1|1255592_1255976_+|DNA-ligase
MTDFNTKLHNHLCSRGNLGNPLTDKERRQLKSLLKFEAKFLPTPRQLLKIINDFKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSDETPLLDADYDKIEIRIIKLAEHFPELYSLAHPIISEVGY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174704 : 195354

Liberibacter_phage(78.57%)

head,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013461578.1\|174704_175355_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.2e-17	27.9
WP_013461579.1\|175567_176017_-	lysozyme	K4I410	Acidithiobacillus_phage	1.1e-25	42.8
WP_013461580.1\|176084_176480_+	hypothetical protein	NA	NA	NA	NA
WP_013461581.1\|176476_176953_-	hypothetical protein	A0A1L2K1K3	Liberibacter_phage	3.3e-68	80.3
WP_013461582.1\|176949_177207_-	hypothetical protein	NA	NA	NA	NA
WP_013461583.1\|177203_179636_-	hypothetical protein	A0A1L2K1G1	Liberibacter_phage	8.0e-86	30.2
WP_143827757.1\|179699_180683_-	hypothetical protein	A0A221SAN9	Ralstonia_phage	1.5e-06	24.8
WP_013461585.1\|180903_182547_-	hypothetical protein	E7DUF6	Liberibacter_phage	1.4e-33	24.7
WP_013461586.1\|182570_182960_-	hypothetical protein	NA	NA	NA	NA
WP_013461587.1\|182960_183407_-	hypothetical protein	NA	NA	NA	NA
WP_143827758.1\|183409_184510_-	hypothetical protein	A0A1L2JXW4	Liberibacter_phage	6.5e-19	34.6
WP_013461589.1\|184428_186726_-	hypothetical protein	NA	NA	NA	NA
WP_013461590.1\|186725_188492_-	hypothetical protein	E7DUF9	Liberibacter_phage	7.6e-118	39.3
WP_013461591.1\|188493_189012_-	hypothetical protein	E7DUG0	Liberibacter_phage	3.6e-52	58.1
WP_013461592.1\|189017_190049_-	hypothetical protein	E7DUG1	Liberibacter_phage	1.0e-151	77.8
WP_013461594.1\|190253_190568_+	hypothetical protein	A0A1L2JXY6	Liberibacter_phage	2.1e-23	60.2
WP_013461595.1\|191099_192767_-\|head,tail	head-tail joining protein	A0A1L2JXZ4	Liberibacter_phage	1.9e-219	72.8
WP_013461596.1\|192763_193105_-	hypothetical protein	NA	NA	NA	NA
WP_013461597.1\|193097_194627_-\|terminase	terminase	E7DUG6	Liberibacter_phage	1.0e-227	74.0
WP_013461598.1\|194835_195354_-	hypothetical protein	E7DUK8	Liberibacter_phage	6.1e-44	57.1

DBSCAN-SWA_2

207069 : 218654

Liberibacter_phage(72.73%)

integrase

attL 206735:206748|attR 219265:219278

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
206735:206748	attL	NA	NA	NA	NA
WP_013461618.1\|207069_207456_+	hypothetical protein	E7DUM1	Liberibacter_phage	2.5e-10	40.0
WP_013461620.1\|208008_209175_+	DUF2800 domain-containing protein	A0A240FAU6	Liberibacter_phage	1.1e-162	72.1
WP_193345361.1\|209245_209416_+	Rha family transcriptional regulator	A0A2H4JDP7	uncultured_Caudovirales_phage	2.2e-06	48.0
WP_013461622.1\|209451_210243_+	phage repressor protein	E7DUM4	Liberibacter_phage	3.5e-99	71.5
WP_013461623.1\|210258_210903_+	DUF2815 family protein	A0A1L2K1I5	Liberibacter_phage	4.2e-74	63.0
WP_013461624.1\|210906_212928_+	DNA polymerase	E7DUM6	Liberibacter_phage	6.8e-272	70.7
WP_013461625.1\|212924_213230_+	VRR-NUC domain-containing protein	A0A220A2X3	Liberibacter_phage	1.6e-36	76.8
WP_013461626.1\|213217_214588_+	DEAD/DEAH box helicase	E7DUM8	Liberibacter_phage	6.3e-189	69.2
WP_013461627.1\|214590_214974_+	DNA ligase	A0A1L2K1J5	Liberibacter_phage	3.1e-16	51.0
WP_013461630.1\|215523_215697_+	hypothetical protein	NA	NA	NA	NA
WP_044054051.1\|215699_216722_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.8e-47	37.3
WP_044054053.1\|217679_218654_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	8.3e-26	35.3
219265:219278	attR	NA	NA	NA	NA

DBSCAN-SWA_3

814347 : 825479

Sulfitobacter_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013462181.1\|814347_814764_-	hypothetical protein	R9TS95	Rhizobium_phage	4.8e-07	34.5
WP_013462182.1\|814999_816082_-\|tail	tail fiber domain-containing protein	A0A088F817	Sulfitobacter_phage	1.1e-05	46.9
WP_013462183.1\|816253_817423_-\|tail	tail fiber domain-containing protein	A0A088FAP6	Sulfitobacter_phage	3.1e-19	27.5
WP_013462184.1\|817704_818148_-	hypothetical protein	X2CY06	Brucella_phage	3.4e-19	36.4
WP_143827797.1\|818160_819747_-	hypothetical protein	M4QM83	Sulfitobacter_phage	1.8e-54	31.9
WP_013462188.1\|820344_820920_-	hypothetical protein	A0A1Y0T3P1	Sinorhizobium_phage	7.1e-09	27.4
WP_044054330.1\|820919_821240_-	hypothetical protein	NA	NA	NA	NA
WP_013462190.1\|821253_822249_-	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	2.0e-112	61.9
WP_044054331.1\|822446_823064_-	hypothetical protein	NA	NA	NA	NA
WP_013462192.1\|823565_825479_-	hypothetical protein	F8TUR6	EBPR_podovirus	6.4e-155	47.4

DBSCAN-SWA_4

1221368 : 1240272

Liberibacter_phage(92.86%)

head,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143827758.1\|1221368_1222469_-	hypothetical protein	A0A1L2JXW4	Liberibacter_phage	6.5e-19	34.6
WP_013462545.1\|1222387_1224871_-	hypothetical protein	NA	NA	NA	NA
WP_013462546.1\|1224870_1226637_-	hypothetical protein	E7DUF9	Liberibacter_phage	2.0e-118	39.2
WP_013462547.1\|1226638_1227157_-	hypothetical protein	E7DUG0	Liberibacter_phage	3.2e-48	57.0
WP_013461592.1\|1227162_1228194_-	hypothetical protein	E7DUG1	Liberibacter_phage	1.0e-151	77.8
WP_013462548.1\|1228217_1228922_-	hypothetical protein	A0A1L2JXY9	Liberibacter_phage	1.2e-37	43.4
WP_013462549.1\|1228925_1229252_-	hypothetical protein	A0A1L2JXY6	Liberibacter_phage	8.1e-26	59.6
WP_013462550.1\|1229244_1230912_-\|head,tail	head-tail joining protein	A0A1L2JXZ4	Liberibacter_phage	1.2e-218	72.2
WP_013461596.1\|1230908_1231250_-	hypothetical protein	NA	NA	NA	NA
WP_013462551.1\|1231242_1232772_-\|terminase	terminase	E7DUG6	Liberibacter_phage	3.3e-226	73.4
WP_143827808.1\|1233261_1233744_-	hypothetical protein	E7DUK8	Liberibacter_phage	3.7e-11	35.9
WP_013462553.1\|1234003_1234441_-	hypothetical protein	Q9JMN0	Wolbachia_phage	4.0e-44	59.4
WP_143827789.1\|1234993_1235239_-	hypothetical protein	NA	NA	NA	NA
WP_013462557.1\|1236170_1236803_-	helix-turn-helix domain-containing protein	A0A1L2K1H9	Liberibacter_phage	1.8e-37	47.9
WP_143827790.1\|1237060_1237678_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_013462559.1\|1237819_1238575_-	helix-turn-helix transcriptional regulator	A0A1L2K1H9	Liberibacter_phage	4.9e-34	51.0
WP_013462560.1\|1238740_1239094_+	hypothetical protein	NA	NA	NA	NA
WP_013462561.1\|1239126_1239342_+	hypothetical protein	A0A1L2K5T2	Liberibacter_phage	3.5e-17	62.0
WP_013462562.1\|1239486_1240272_+	phage repressor protein	E7DUM4	Liberibacter_phage	7.3e-65	52.9

DBSCAN-SWA_5

1247941 : 1257724

Liberibacter_phage(77.78%)

integrase

attL 1242551:1242563|attR 1257962:1257974

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1242551:1242563	attL	NA	NA	NA	NA
WP_013461618.1\|1247941_1248328_+	hypothetical protein	E7DUM1	Liberibacter_phage	2.5e-10	40.0
WP_013462566.1\|1248880_1250047_+	DUF2800 domain-containing protein	A0A240FAU6	Liberibacter_phage	1.9e-165	72.7
WP_193345370.1\|1250117_1250330_+	Rha family transcriptional regulator	A0A2H4JDP7	uncultured_Caudovirales_phage	8.4e-08	42.5
WP_013462568.1\|1250443_1251238_+	phage repressor protein	A0A220A2W2	Liberibacter_phage	8.4e-101	72.8
WP_013462570.1\|1251902_1253930_+	DNA polymerase	E7DUM6	Liberibacter_phage	2.6e-271	69.8
WP_013461625.1\|1253926_1254232_+	VRR-NUC domain-containing protein	A0A220A2X3	Liberibacter_phage	1.6e-36	76.8
WP_013462571.1\|1254219_1255590_+	DEAD/DEAH box helicase	E7DUM8	Liberibacter_phage	1.1e-188	69.2
WP_013461627.1\|1255592_1255976_+	DNA ligase	A0A1L2K1J5	Liberibacter_phage	3.1e-16	51.0
WP_013461630.1\|1256525_1256699_+	hypothetical protein	NA	NA	NA	NA
WP_044054051.1\|1256701_1257724_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.8e-47	37.3
1257962:1257974	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014774

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection