CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014800	Pseudoalteromonas sp. SM9913 chromosome II, complete sequence	0 crisprs	csa3,cas3,DinG	0	0	0	0
NC_014803	Pseudoalteromonas sp. SM9913 chromosome I, complete sequence	2 crisprs	DEDDh,RT,cas3,DinG,cas6f,cas7f,cas5f,PD-DExK,csa3	0	1	0	0

Cas Category Instructions

Results visualization

1. NC_014803

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CRISPR-Cas detection and classification

Crispr_ID: NC_014803_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014803_1

414542-414664

Orphan

Consensus_repeat	Method
AACGGACAAATTACTGACTATTTTGAATGCGGCACTAGCTCAGTTG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_014803_1

>merge|NC_014803|1|414542-414664|CRISPRCasFinder
AACGGACAAATTACTGACTATTTTGAATGCGGCACTAGCTCAGTTGCCAGAATGTAGGACGCGACCCGTCGCGCACTAACGGACGAATTACTGACTATTTTGAATGCGGCACTAGCTCAGTTG

>NC_014803|1|1|414542-414664|CRISPRCasFinder
AACGGACAAATTACTGACTATTTTGAATGCGGCACTAGCTCAGTTG	CCAGAATGTAGGACGCGACCCGTCGCGCACT
AACGGACGAATTACTGACTATTTTGAATGCGGCACTAGCTCAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014803.1\|WP_013463970.1\|420459_420666_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NC_014803.1\|WP_028834531.1\|418557_419532_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NC_014803.1\|WP_013463967.1\|417328_417763_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|183251
NC_014803.1\|WP_013463969.1\|419768_420449_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|274372
NC_014803.1\|WP_013463959.1\|408182_408377_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NC_014803.1\|WP_013463958.1\|407173_408175_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274092
NC_014803.1\|WP_008465084.1\|404390_404768_+\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NC_014803.1\|WP_128860809.1\|415121_416290_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_014803.1\|WP_013463972.1\|421081_421591_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NC_014803.1\|WP_013463962.1\|410695_411475_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NC_014803.1\|WP_013463961.1\|409185_410712_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238574
NC_014803.1\|WP_008115498.1\|417855_418476_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NC_014803.1\|WP_013463965.1\|416372_416801_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NC_014803.1\|WP_174818642.1\|405177_407070_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_014803.1\|WP_016900290.1\|411581_412448_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NC_014803.1\|WP_013463960.1\|408381_409173_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_014803.1\|WP_008115490.1\|413643_414189_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NC_014803.1\|WP_013463964.1\|412462_413521_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NC_014803.1\|WP_013463966.1\|416797_417265_-\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|381734
NC_014803.1\|WP_013463971.1\|420676_421003_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014803.1\|WP_013463970.1\|420459_420666_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.83455e-11
NC_014803.1\|WP_028834531.1\|418557_419532_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NC_014803.1\|WP_013463967.1\|417328_417763_-\|transcriptional-repressor	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	1.72678e-51
NC_014803.1\|WP_013463969.1\|419768_420449_+\|PspA/IM30-family-protein	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	3.94631e-53
NC_014803.1\|WP_013463959.1\|408182_408377_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	1.10545e-14
NC_014803.1\|WP_013463958.1\|407173_408175_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	1.29238e-67
NC_014803.1\|WP_008465084.1\|404390_404768_+\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	2.72307e-27
NC_014803.1\|WP_128860809.1\|415121_416290_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.20151e-57
NC_014803.1\|WP_013463962.1\|410695_411475_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.97721e-98
NC_014803.1\|WP_013463961.1\|409185_410712_+\|thiamine-phosphate-synthase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	3.27889e-97
NC_014803.1\|WP_008115498.1\|417855_418476_+\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	3.4272e-37
NC_014803.1\|WP_013463965.1\|416372_416801_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	2.48029e-58
NC_014803.1\|WP_174818642.1\|405177_407070_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_014803.1\|WP_016900290.1\|411581_412448_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
NC_014803.1\|WP_013463960.1\|408381_409173_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.79683e-154
NC_014803.1\|WP_008115490.1\|413643_414189_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	5.93103e-131
NC_014803.1\|WP_013463964.1\|412462_413521_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NC_014803.1\|WP_013463966.1\|416797_417265_-\|chemotaxis-protein-CheX	gnl\|CDD\|381734	cd17906, CheX, chemotaxis phosphatase CheX. This family contains CheX CheY-P phosphatase which is very closely related to CheC chemotaxis phosphatase; both dephosphorylate CheY, although CheC requires binding of CheD to achieve the level of activity of CheX. CheX has been shown to be the most powerful CheY-P phosphatase of the CheC-FliY-CheX (CXY) family. Structural and functional data of CheX and its CheY3 substrate in Borrelia burgdorferi (the causative agent of Lyme disease) bound to the phosphoryl analog BeF3(-) and Mg2+ reveal a unique mode of binding, but a catalytic mechanism which is virtually identical to that used by the structurally unrelated CheZ, providing a striking example of convergent evolution. Thus, CheX is quite divergent from the rest of the CXY family; it forms a dimer and some may function outside chemotaxis. The data also suggest a possible CheX regulatory mechanism through dissociation of the CheX homodimer.	4.36038e-53
NC_014803.1\|WP_013463972.1\|421081_421591_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	1.5235e-39

>NC_014803.1|WP_008115490.1|413643_414189_+|oligoribonuclease
MTINKSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLDGMDEWCTTQHGKSGLTARCKASTFDEAYAVEQTLAFLKQWVPAGASPMCGNSIGQDRRFMNKYMRELEDFFHYRNLDVSTIKELARRWKPDVLAQVNKKGSHLALDDIKDSIMELKVYREKFFNL
>NC_014803.1|WP_013463964.1|412462_413521_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKQKKLSKGQSRRIKANHQKRLSNADTKPAKVGAQEWQTDNLGQVENAIVISRFGQHADVETQNGDVLRCNIRRTVSNLVCGDEVLFRRAKVSEGDLAGVIEATQERRSQLTRPDFYDGVKVIAANIDQILMVSAVLPEFTPSIIDRYLIACEDMGIEPILVLNKIDLIDEAGLNEIQQILDIYRKLNYQVLLVSNITGEGINELKEVLAGKNNIFVGQSGVGKSTLVNTVLPDAEILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDVERVTWCFKEFREFIGGCRFRDCKHLNDPGCIIKQAVADGDISKLRFESYHRILETMADGRAGARAPRV
>NC_014803.1|WP_016900290.1|411581_412448_-|phosphatidylserine-decarboxylase
MSLDKFKIAMQYAMPKHFISRVVGKLAAAKAGALTTTLIKLFIKQYKIDMSEAKYSDPAHYKSFNEFFTRPLKDGVRPMVEDDDIIIHPVDGAISQLGDIVDGQLIQAKGHDYSLQALLGGSQDDTTPFLGGKFATIYLAPKDYHRIHMPIDGTLSKMIYVPGDLFSVNPLTAQNVPNLFARNERVVAIFETEIGPLAMVLVGATIVASIETIWAGTVTPPAGSDVFSWNYPTKGENAITLKKGEEMGRFKLGSTVVLAWGANKAEILDDQLPEVVTRLGTAFAKIDD
>NC_014803.1|WP_013463962.1|410695_411475_+|HesA/MoeB/ThiF-family-protein
MRMPANMQTQQLSDKEILRYSRHILLDEVGLEGQLTLKRSTVAVVGAGGLGSPALLYLVAAGIGSLILIDDDVVELSNLQRQVLYKVNHLGQNKVRAAGKVLASLNNQINIITHTQKLDDTNSALLLKNADIVLDCSDNFATRYTVNRYCIANNTRLITGAALATQGQLMGFDFRQSDSPCYGCVFPQSSDAPVINCSNAGVISPLLGIVGSMQAQLTLNMLLGHFKGNMFITFDALSLKQQHFKMTKDLACKECGGYE
>NC_014803.1|WP_013463961.1|409185_410712_+|thiamine-phosphate-synthase
MTNVVWTIAGSDSGGGAGIQADIKAMQSFGVHGCTAITALTAQNSLGVEAINAVSTDIIESQLLALEKDMKAKVIKIGMLANVQQIQLISEHISHYKAKWPTPPVIVYDPVAIASSGDLLTEEDTVSAIKECLLPLVDVITPNTHETQLLTGVYLIGPAAIKEAASKLMAWGAKAVVIKGGHWDYPSGYCIDYCTQNGEDYWLGNEKIQVPHSHGTGCSMASVIAACLAKDYPLKDAFILAKAYINQGLKQSVRYGEGIGPVAQTQFPTNLAHYPQVIEPGSWLGDELDFDVPLDFNMAADFAACESKKLGLYGVVDSIEWLEKCLQQGIKTAQLRVKNKTQNELDELIAKAVTLGEQYNAQVFINDYWQLAIKHGAYGVHLGQEDLESANLVAIKEAGLRLGLSTHGFYEMLRAHNYRPSYMAFGAIYPTTTKDMTGQIQGLEKLTRFVPLMQSYPTVAIGGIDLNRAQEVAKTGVGSVAVVRAITEADDYVEAINTLKSVINENAC
>NC_014803.1|WP_013463960.1|408381_409173_+|thiazole-synthase
MQSKDCLTIYGEPINSRLLIGSALYPSPDIMTQSIKASGAEIVTVSLRRQQNAAAGNDFWQLIKNTGLKILPNTAGCHSVKEAINLAKMCREVFATDWIKLELIGDDYNLQPDPFALLEATKILIDDGFKVLPYCTDDLVLCQRLNGLGCEVLMPWGAPIGTGKGLLNSYNLKTIRERLPNTTLIVDAGLGLPSHACQALELGYDAVLLNSAIAGAGCPVTMSRAFKAAVEAGRFAYNAKAMPEKDVATPSTPTMGMPFWHQQ
>NC_014803.1|WP_013463959.1|408182_408377_+|sulfur-carrier-protein-ThiS
MNITINGEPLNVTSHALLEIVKNVGAMAPYAVAVNGEFIPQSRHSHVVINEGDSIELLSPIQGG
>NC_014803.1|WP_013463958.1|407173_408175_+|FAD-dependent-oxidoreductase
MFYDIAVVGFGLAGRLAALELSKQHRITVFEADDEHTQNSAGKVAAAMLAPLAESVMCEHDLALLGVDSIARWPAILDELNSEVFFQQQGTLVVAHPQDKGDLQSFAQRIKPLLNFSAKAVNTQQIADLEPELTGRFNQGLFLSGEAQIDNQAFYKASFRLLNKRKVKFVFNQRASIFDNKVNNREFDYIIDCRGLGAKQDQPLRGVRGEVARLYAPEVNLTRPVRLMHPRYPIYIAPKPNHEYVIGATEIESQDTGPATVRSTLELLSAAYTVHSGFAEARLLNIQTGLRPAFSDNRPQVKKTSKVISINGLYRHGYMLAPALVAQALSQIE
>NC_014803.1|WP_174818642.1|405177_407070_+|phosphomethylpyrimidine-synthase-ThiC
MYNLTGQPFPSSHKVYVEGTQQGVRVGMREITLSDTFIGGTDENPVYESNEPLRVYDTSGPYTDPNFELDVRKGLDKYREQWIESRGDTEVLESVTSQFAQQRMADDGLDHIRFEHLPKIRRAKAGKNVTQMHYARQGIVTPEMEYVAIRENMGRAQIREELLAAQHKGESFGASIPEFITPEFVRAEIARGRAILPNNINHPETEPMIVGRNFLVKVNANIGNSSVGSSIEEEVEKMVWSTRWGADTVMDLSTGRYIHETREWLVRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEDICEILKQYDVCFSLGDGLRPGSIADANDEAQFSELRTLGELTKIAWKHDVQVFIEGPGHVPMHMIKANMEEQLKHCDEAPFYTLGPLTTDIAPGYDHITSGIGAAQIAWYGCAMLCYVTPKEHLGLPNKEDVKEGLITYKIAAHAADLAKGHPGAQERDNALSKARFEFRWHDQFNIGLDPVRAREYHDETLPQESGKVAHFCSMCGPKFCSMKITQEVRDYAKDLEARGIDPNNVGDAIEIKMVDVEAEMKAKSEEFKQTGSEIYHKAI
>NC_014803.1|WP_008465084.1|404390_404768_+|META-domain-containing-protein
MLVIGLCVGCASTGTVTTEQLKYTQWQLSKVDGLAIPASFKASMSFIEALQINGFAGCNKFFGEGSLEDSSLSVSKLGMTRKSCGPELDEFEQQFLQALKQGAELNLQDQKLVMQGEQKFVFIPK
>NC_014803.1|WP_128860809.1|415121_416290_+|IS3-family-transposase
MKIKTRRSHSIEFKTKAVEQSLDSPDTVNVIAHRLGINPVLLSKWRRKMTSKSTSNPIKNQGPDKSYKDLERQVRKLEKQLEDAQLENDVFKKGEGLLGQPKRIRFEYIHQAATAKKTIKKLCTWLSVSKAGYYKWLKQSLSQRASENDSLLEFLKKVSSDEHCIPGYRKLWKAAIDNGYECSKGRVQRLLQSMGYRSAAGKRRYTGSGKKQGHITAENLLGREFSVDEPNTVWVSDITQVRCREGWQYLCVILDLYSRKVVGWATSRVNSADLVIRALKKTWDARKPDGSRLLFHSDQGSQYRAKETISWLNNRQVTISMSRKGNCWDNACSESFFAQYKKEWMNNLNELSRSEMTVQSRFYIENYYNSVRMHGTLGNVSPMQYELMN
>NC_014803.1|WP_013463965.1|416372_416801_-|YjbQ-family-protein
MSWSQTTITLKPRSRGFHLIDNDILTKLPQLSQLKIGLLHLFIQHTSASLTINENADPTVRMDMESHFNQFVPERQPYYRHDYEGDDDMPAHIKTSTLGCELTIPINNGQLALGTWQGIYLGEHRDHGGARRIIATLQGETF
>NC_014803.1|WP_013463966.1|416797_417265_-|chemotaxis-protein-CheX
MNVEFINPFLSSLMNVLSTMAQTQLKPGKPRIKTDEVACGDVSGLIGMVGPQTRGSFSITFDESLALTIMERMLGERPDSVNEEVTDMVGEITNMVTGGAKNLLGEKGYDFAMATPIVVSGKNHTITHKSDGKKIIMPFTSDAGNANIEVSFDKL
>NC_014803.1|WP_013463967.1|417328_417763_-|transcriptional-repressor
MNIESLVSKAKQVCDNRGARFTPIREKVFRLLASAQGGVGAYDLLEQLKVTETGAKPATIYRALDFLAELGFIHKIESTNAFMLCHHFDHIHPVQLLICDTCGFVKELHSTVISHELNNLAAESGFVVSGQTIEAHGKCDACRA
>NC_014803.1|WP_008115498.1|417855_418476_+|MarC-family-protein
MHELLAIFIFFFAVIDPIGTIPVFIAVTRGDDDKFKRKVIFKAVGVSALVLLFFVVAGEQLLNVIEIPLSAFQIAGGLILLIFALSMTFGESKPEAEIKSVRDSTETAIFPLAIPSIASPGAMLGAVLMTRNEEYTWVEQMITSSMMLAVLVVVLILLLLATHVHKIIGDSGASIISRIMGLILSSVAVTNILNGIAQYFGLQVFA
>NC_014803.1|WP_028834531.1|418557_419532_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MDKRTLNRRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPQALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMKSEVSIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDAANTQTRHDVVRSMYDYIEEEMRLGANFWHVARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSYVPE
>NC_014803.1|WP_013463969.1|419768_420449_+|PspA/IM30-family-protein
MGIFNRVNDVIQANIVAMLDKAEDSEKLLNLMLTEMQEALNECRSTAAALLCEEKSIKRQISNKQQALANWQLKAEHAVTKNRDDLAKSALAEKHTVEQSIGCLQTQLEALQQSITKITEDCERLQQKMTQAKAKQAQLAKRENVVEARAKINTQLQSDKVAFALSRFEQIERRVESVESQVAAYELTDTASNTAMQIESLVKNEKIDAELASLKASLNTANKQTA
>NC_014803.1|WP_013463970.1|420459_420666_+|PspC-domain-containing-protein
MNSFNTHRRWYKNTLNKKISGVCSGLAYRLDFPVWSTRLVTVLLFLSFPFAVALGYLIAHCCLEEKAV
>NC_014803.1|WP_013463971.1|420676_421003_+|hypothetical-protein
MKTFAVCLVILALFLINSGSIIHFDVWQFPLWISDISWTGIELIGALVAIIVVIAIVALVTMGLVGAAMVALAGTILAFLFGSLMIAWPLLFVAGLCWLIADNKKVVS
>NC_014803.1|WP_013463972.1|421081_421591_+|copper-chaperone-PCu(A)C
MIKQCILIASALMVGVFSSSLMAHEGHEHDSVVAQLQVTHAQVREFLPATKASVAYFSIKNHSNVPATLTKATIDGLGRVEIHEHVHADGMMKMQKVESLLIKAHQQLDFKPGSYHLMVFEPQEPLKVGQERKLTLYFEDGNRVFTNAKVVSLASQAEPVKASKDHSHH

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Crispr_ID: NC_014803_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014803_2

1402561-1402678

Orphan

Consensus_repeat	Method
ATTGGTACGACTGAGTGGATTCGAACCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014803_2

>merge|NC_014803|2|1402561-1402678|CRISPRCasFinder
ATTGGTACGACTGAGTGGATTCGAACCACCAACCTTTGGAGCGGGTGATTAAGAGTAGGTAGTGCTTTTTCTTGAGGTGTTTTTTGTAATTGGTACGACTGAGTGGATTCGAACCACC

>NC_014803|2|2|1402561-1402678|CRISPRCasFinder
ATTGGTACGACTGAGTGGATTCGAACCACC	AACCTTTGGAGCGGGTGATTAAGAGTAGGTAGTGCTTTTTCTTGAGGTGTTTTTTGTA
ATTGGTACGACTGAGTGGATTCGAACCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014803.1\|WP_013464738.1\|1400531_1401305_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270228
NC_014803.1\|WP_013464733.1\|1393114_1395724_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
NC_014803.1\|WP_013464744.1\|1407569_1408262_+\|hypothetical-protein	unknown	unknown	unknown
NC_014803.1\|WP_013464737.1\|1399570_1400494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235600
NC_014803.1\|WP_013464743.1\|1406577_1407447_-\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NC_014803.1\|WP_013464735.1\|1397132_1398431_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_014803.1\|WP_013464741.1\|1403989_1405345_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NC_014803.1\|WP_013464730.1\|1389916_1390633_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_014803.1\|WP_013464742.1\|1405537_1406164_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NC_014803.1\|WP_008464077.1\|1406160_1406364_-\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NC_014803.1\|WP_013464734.1\|1395736_1396912_+\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
NC_014803.1\|WP_013464739.1\|1401716_1402214_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_014803.1\|WP_041695689.1\|1398474_1399374_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NC_014803.1\|WP_013464748.1\|1410051_1411434_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238634
NC_014803.1\|WP_013464749.1\|1411446_1412688_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238634
NC_014803.1\|WP_013464747.1\|1409165_1409951_+\|hypothetical-protein	unknown	unknown	unknown
NC_014803.1\|WP_013464740.1\|1402962_1404012_-\|DUF3080-family-protein	unknown	unknown	gnl\|CDD\|378622
NC_014803.1\|WP_008465151.1\|1408359_1408722_-\|DUF3718-domain-containing-protein	unknown	unknown	gnl\|CDD\|378871
NC_014803.1\|WP_013464732.1\|1391873_1393001_+\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NC_014803.1\|WP_013464731.1\|1390969_1391848_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086

Protein	Function_ID	Function_description	E-value
NC_014803.1\|WP_013464738.1\|1400531_1401305_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270228	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins. This family comprises the periplasmic sensor domain of the two-component sensor-kinase systems, such as the sensor protein BvgS of Bordetella pertussis and histidine kinase receptors (HisK), and uncharacterized related proteins. Typically, the two-component system consists of a membrane spanning sensor-kinase and a cytoplasmic response regulator. It serves as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. The N-terminal sensing domain of the sensor kinase detects extracellular signals, such as small molecule ligands and ions, which then modulate the catalytic activity of the cytoplasmic kinase domain through a phosphorylation cascade. The periplasmic sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	0.00183697
NC_014803.1\|WP_013464733.1\|1393114_1395724_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
NC_014803.1\|WP_013464749.1\|1411446_1412688_+\|amidohydrolase-family-protein	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	1.86873e-60
NC_014803.1\|WP_013464737.1\|1399570_1400494_+\|hypothetical-protein	gnl\|CDD\|235600	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.	0.00286629
NC_014803.1\|WP_013464743.1\|1406577_1407447_-\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	9.28906e-112
NC_014803.1\|WP_013464735.1\|1397132_1398431_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.43066e-53
NC_014803.1\|WP_013464741.1\|1403989_1405345_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	1.31878e-154
NC_014803.1\|WP_013464730.1\|1389916_1390633_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.72831e-45
NC_014803.1\|WP_013464742.1\|1405537_1406164_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	8.78771e-96
NC_014803.1\|WP_008464077.1\|1406160_1406364_-\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	4.74444e-19
NC_014803.1\|WP_013464734.1\|1395736_1396912_+\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
NC_014803.1\|WP_013464739.1\|1401716_1402214_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.61134e-32
NC_014803.1\|WP_041695689.1\|1398474_1399374_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.2879e-09
NC_014803.1\|WP_013464748.1\|1410051_1411434_+\|amidohydrolase	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	8.3035e-139
NC_014803.1\|WP_013464740.1\|1402962_1404012_-\|DUF3080-family-protein	gnl\|CDD\|378622	pfam11279, DUF3080, Protein of unknown function (DUF3080). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.	1.95754e-71
NC_014803.1\|WP_008465151.1\|1408359_1408722_-\|DUF3718-domain-containing-protein	gnl\|CDD\|378871	pfam12514, DUF3718, Protein of unknown function (DUF3718). This domain family is found in bacteria and viruses, and is approximately 70 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.21218e-09
NC_014803.1\|WP_013464732.1\|1391873_1393001_+\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NC_014803.1\|WP_013464731.1\|1390969_1391848_+\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0

>NC_014803.1|WP_013464739.1|1401716_1402214_+|transposase
MRYRRNYQPGGTYFFTVNLQDRKESLLVEHIDLLRGAVRWVKMHKPFYIDAWVVLPDHMHAVLTLPEGDSDYSGRWREIKKRFSKGLPKNEHVSLARINKNERGIWQRRFWEHTIVDERDYWHHVNYVHFNPLKHGLVERVVDWPYSSFHKAVASGMYSRNWCGE
>NC_014803.1|WP_013464738.1|1400531_1401305_-|transporter-substrate-binding-domain-containing-protein
MKSAALITLLLLFIFAGQVQAKTLVKVGGYEFPPYIEIVDGRASGLTVELISELNKIQSDYHFELVLTTPIRRFKDYQQGLFDAVFFEDPNWRWLQGNHIISSSPVIATDSEVFIALKQFAKSQAWFDNLDDKTLIGILGYHYQLANFENNPSILENEYKMTLLSSHKKSIELVLKKRSDMAIVTRSYLNQYLNKYPESKKKLLISERVAQTYKHQLLIRPTHQLNVNTLYKIVKKTLAQNTLATKLKILGLQQHDI
>NC_014803.1|WP_013464737.1|1399570_1400494_+|hypothetical-protein
MANKPISEDNPFANLSDVQCEQIQNWYQKHISSTLHSLLKGSKSGQVIESKLESTLNKALSQSKQLTTYAIEGNSSIKLKNASVMAELNDTRDLFYGAQVKINKLEQKITTSAQEIQLLETEKSELQLEVRSLKQRLNHVLSRLESQGVSFQKSHYVGRILVQALRASFENWQQTPQGEPFKNHDFYKLFPRVLYSSLLKEIEKLLGEHDYNQIERSLSDFVFKQKGSPVENWPDEDPIYETRLINQKQSELLIKLHSQHLQRKNFTSYLEKRLSSTGFTHKHSDLLMTLVEFATHDENSKFSSYCH
>NC_014803.1|WP_041695689.1|1398474_1399374_-|transporter-substrate-binding-domain-containing-protein
MRIFLIAALVLSFFTYAQPAPVTYTVDNKNITLPGEKYKSGYGYNLKADTVLRLVTLNWPPYIDDHLCNKGWLYQLTVSMLVKRGYGVHIELYPWARAVREAELGKADILFPEYFINDDVMSENILTKTRNQLLALSEPIPGGDLSFVALRDHSINYDGSIESVKNRVMGVVRSYKNSKELDELIEQGEIKTIVANSEYQLIHLLLNGRVELIVADLEVLRASIYKSLLSAREKKRMLSALVALTPSIEYKALYYEISKSTPNWQFILDDINAEIAIMRANNEFERFIKTKKQQCYNLD
>NC_014803.1|WP_013464735.1|1397132_1398431_+|diguanylate-cyclase
MDLSRLNAERLIQNLQTGVVVHSPDTGILYANPAALNILRLTKEQALGRDSFDSKWKLLDEFRQPLQSSQYPVSIVIETQKPLMNLEIGICDSSSDEITWVLCNAYPEFDEQNNIAEIVVTFIDITHQKQAIPFKEIVELASDVILVTEASPITNDGPKIVYANQSFTKVTGYHLDEVRGKTPRILQGAKTQQATRDKIRHALENKQQVSEQILNYKKSGEPYWIDMNIFPLKNALGEVAYYAAIERDITKMKQYQAQLKDLTIKDPLTNLLNRRGFMETAKLALDECIKDSQHLTLTMIDIDHFKRINDQFGHEGGDSVLQSIAATFKSFCDSDDIIARLGGEEFCIVSPTKCVSTVVKTLAKLQDHLKDNPVQLSSGGQVSYTISSGVSSLTSESCSLQGLLRNADTALYNAKTTGRNQTVVFNQSLDYE
>NC_014803.1|WP_013464734.1|1395736_1396912_+|2-methylaconitate-cis-trans-isomerase-PrpF
MFKPQIKVPATYMRGGTSKGVFFNLTDLPAPAQVAGAARDSLLLRVIGSPDAYGKQTDGMGGATSSTSKTVILSKSEQPDHDVDYLFGQVAIDKAFVDWSGNCGNLTSAVGAFAISNGLVDKSRVPDNGIAIVRVWQANIKKSILVHVPMTNGAVQETGDFELDGVTFPAAEVKLEFIDPADGDGALFPTGNVVDDLEVPGVGTLKATMINAGIPTIFVNASDIGYTGTELQDDINADEAALTKLETIRAYGAVKMGLISTINEAQARQHTPKVAFVAAPLNYKSSSGKQVNASDIDLLVRAMSMGKLHHAMMGTAAVAIGTAAAIDGTLVNLAAGGGAINQVNFGHPSGTLKVGAEAVVTNGQWQVTKASMSRSARVLMEGWVRAPFDYD
>NC_014803.1|WP_013464733.1|1393114_1395724_+|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MTIINNTQYRKPLPGSNVDYYDTQAAVDAIKPGAYATLPYSSRVFAENLVRRCEPDMLTDALSQIIERKQDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAAKGGDPAKVNPVVPTQLIVDHSLAVEHAGFDPDAFEKNRAIEDRRNDDRFHFINWTKTAFKNIDVIPPGNGIMHQINLEKMSPVIQNRDGIAFPDTLVGTDSHTPHVDALGVIAVGVGGLEAESVMLGRASYIRLPDIVGVELTGKRQPGITATDIVLAITEFLREQRVVSTYLEFYGEGADALTLGDRATISNMTPEFGATAAMFYIDDKTIDYLRLTGRDEDQIALVENYARTAGLWSDSLKTAHYDRVLKFDLSSVGRNIAGPSNPHRRVSTSDLAAQGISGVVENEEGLMPDGACIIAAITSCTNTSNPRNVIAAGLLARNANAKGLMRKPWVKTSLAPGSKAVQSYLEDANLLTELEQLGFGIVGFACTTCNGMSGALDPKIQQEVIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDILGKDQQGNDVTLKDLWPSDEEIDAVIKQSVKPEQFRKVYEPMFNLTVDYGEDNDPLYDWRPESTYIRRPPYWEGALAGERSMTGMRALAVLGDNITTDHLSPSNAIMASSAAGEYLTKMNVPEEDFNSYATHRGDHLTAQRATFANPKLLNEMVLDENGEVKQGSYARIEPEGENTRMWEAIETYMQRKQPLIIVAGADYGQGSSRDWAAKGVRLAGVQVIAAEGFERIHRTNLIGMGVLPLEFKPGTTRKTLNLDGSESYDVKGEPTPGATLELVITRKNGEVLNVPMKCRLDTQEELSIYAAGGVLQRFAQDFLEATQAS
>NC_014803.1|WP_013464732.1|1391873_1393001_+|2-methylcitrate-synthase
MVDKALGGAGLRGQVAGQTALCTVGQTGSGLTYCGYDISELAEKAQFEEVSFLLSRGELPTSSELAEYKAKLKSLRGLPEALKTVLENIPKDAHPMDVMRTGCSMLGNLEMENDFGEANDAIDRMVAIFPSIICYWYRFTHDGVRIETQTGDDSVGAHFLTLLHDKAPSELFAQVMNVSLILYAEHEFNASTFTGRVCASTLSDIHSCVTGAIGTLRGPLHGGANEAAMDMIEGFTSADQAEDALMGMLERKDKIMGFGHAIYRESDPRNVIIKKWSEKLAAEVGDDVLYPVSVRCEEVMWREKKLFCNADFFHASAYHFMGIPTKLFTPIFVMSRVTGWTAHVKEQRANNRIIRPSADYTGPDARSYTPIESRG
>NC_014803.1|WP_013464731.1|1390969_1391848_+|methylisocitrate-lyase
MSAGLKFKQAIANNHPLQVVGTINAYTAMMAEKMGHQAIYLSGAGVANASFGMPDLGMTSLDNVLEDIRRITGASDLPLLVDADTGWGGAFNIARTVKEMTKAGAAGFHIEDQVAQKRCGHRPNKEIVTQAEMVDRIKAAVDAKTDSDFYIMARTDAFQKEGLNAAIDRAAACVEAGADAIFAEAVHDLADYQAFTKAINVPILANITEFGQTPIYTKEQLSDVGVEMVLYPLSAFRAMNKAALNVYSAILNEGSQQSQIENMQTRAELYDFLDYHSYENTLDNLFSAKSDK
>NC_014803.1|WP_013464730.1|1389916_1390633_+|GntR-family-transcriptional-regulator
MTQHLLNETSITTASDKVFVDMRREIVEGSIAQGSKISEPELAKRYGVSRATLREALNRLESCYLVERKANIGCRVVALTAERLIEVYQVRSALEGLACRLAADNMEPDEVQGLKQLLNQHLQTQRVKEGESYYQEAGDLDFHYRIIKGSKNAHLIHLLCHDLYQLIRMYRVQMGMVGPRVSKAFDEHLAIINAIENHDGELAEMLMKRHISASQANIQTKFDGYQQSVKATQNEMAN
>NC_014803.1|WP_013464740.1|1402962_1404012_-|DUF3080-family-protein
MNHLFSLKQSIYTKLPLNWLLAACCMVLLGCSEQPSEANKTYLSRLSNTLQTPEPHTKPLQQLALVEPVEALQPTIKIGITELAGISQCKLNVLISEHNNQLGKTATAASQLKYQIDFIQSAQNCLNTLDKQSNVHSKIAAAKTQKQTQLAHYFNNVLYSEPELSSTWQLTGQELSTQPAGFSDTVEALKKLTTIKHQIETKKSMAINSDDILSALEPLNRYKFDQQLIQAAREQISLNHTATQFVNSLVVEDICPKGKNKQQAKIVSNIFNKYYLKQIQPYQAQLSGYLETLQPLYMQLWFNQAVSSEAVNALLDPNSNNLLSQLKASAKEHVIWWQKFYKTCEISPI
>NC_014803.1|WP_013464741.1|1403989_1405345_-|MATE-family-efflux-transporter
MTFCSWEAKRLLSLAFPVFLAQVTLVLMSVVDTIMAGQVSPTDLAALSIATGIWNPILLAIQGILLALTGVIAQFAGAKDRNGISHYFQQALYLTLLLSIAGFCAAQLANTVILQLDTSPAIAGLAFDYIHFVKWGVFGFLIFTVYRNMTEGMGMTKPAFYISLLGLAVNIPLNYIFIKGLFGLPAFGGAGCGIATALVFTVMAIAQVTYCQLSKKIDAKGLLTGFEKPNFKTIGIITKLGIPISLATFFEVTLFACIPLFIAHLGAVAVSGHQIAASVTALLFMMPLSLSIAISIRIGNLFGQNHLDQLKVAVSTSYIMAAMVALFIAFITFIGRDVISQLYSDSPAVLALASSIMILACIYQLPDALQVAANGILRGLKHTAPISYITFISYWLIGFSLGYVLARTDMIVPAMGPHGFWIGIIVGLSVAAILLMLTVHRRFKREPFILT
>NC_014803.1|WP_013464742.1|1405537_1406164_+|riboflavin-synthase
MFTGIIQTQATVVSRTHTQGVLRLVVSVNEQYVKHLDLGASIAINGCCLTVVKVELSNQDVVAQVHFDVIDETLQLTNLGQLELGSLVNYERSVSFGTELGGHIVSGHIHCTAKIVQIVKLENNYKIQLSLPQKWQRYVLYKGFVSINGASLTVGNIDEHGFWLHLIPETLDITNLGAAVVGDEFNIEVDQQTYTIINTVENYMRQHS
>NC_014803.1|WP_008464077.1|1406160_1406364_-|CPXCG-motif-containing-cysteine-rich-protein
MKDFLSQRIACPHCGHHIHLDLDASMGDQDYYEECSACCNLIHLNMHIDYARNKLELHVDSDDEQIF
>NC_014803.1|WP_013464743.1|1406577_1407447_-|fructosamine-kinase-family-protein
MWKTINQQISQAIHYDFKHTHKRQLQNTSTDKLFHISDGKHNYLVKIAQKNELDRFEAQAQGLKQLTQNSIFMVPDCITTGANIEYAFIVLEWLTLDDLPHTHWSTMGEHLAMLHQKHEQAMFGFDTDNYLSSTPQPNQWHKKWDVFFAEERIGWQLQLLAEKDIVLADPEQLINLVKEQLHNHHVLPSLLHGDFWRGNMGFVNNIPTLFDPACYYGDREVDIAMSEFFAPLPDEFYSAYDHHYPLSQNYQHRKLIYQLYPILNHANIYAGHYLNQAKEHVEKLLNLNK
>NC_014803.1|WP_013464744.1|1407569_1408262_+|hypothetical-protein
MNKSFITNLLAACCVVIGFVFDQAIVLSVGLFALSGAVTNLLAIHMLFEKVPFLYGSGVIALKFESFKVAIRNLILTEFFSEHKIDKLLSKAQPTIDFESVIEKVDLNPAFDNLLVVIEQSQFGSMLAMFGGTEAVEPMREKFIEKMQLSLVQISDTDDFKMLLSDMLTQGNNAESLHNTVLKLVDERLDELTPKMVKEIIQTMIREHLGWLVVWGGVFGGLFGLLAALI
>NC_014803.1|WP_008465151.1|1408359_1408722_-|DUF3718-domain-containing-protein
MISFKATLYSTVLLGAATLTAPVMATTFVAADSSPGTQVCMAVASNKQLTLHKTIKELHTNKHVIGKKLRCNDLSMNDFVALYDLDKSARFFNIEATTSTSIRDLAKVNKLMVVIMAGSK
>NC_014803.1|WP_013464747.1|1409165_1409951_+|hypothetical-protein
MNKTLASYYQQAYACEQQHFNQCFYCGCEATERDHCPPLHMLQSIIDLGEEADFVAIAACYECHALLHNERLMTIDERFSKLKKKLSNKYAKPLRVYNMWEESELGDMSDEFAHSIQAGMKLGKEAAERLAFTGFSYATEEARVTVREKTKEFDVEGTVFTDFKEALNYCITVLKVQKSDFYKILVEDYQGDFNKALSQYRHRHDKVTAAKDGNTLIKDFSKLHKQNSDFVTRTVKHFISKDPSLTTEGALDKLYNNYIKK
>NC_014803.1|WP_013464748.1|1410051_1411434_+|amidohydrolase
MQKFAPSLLAVGLAAALVGCQESGPQDAKVTINKNPYPSTYQPVATSSTLITNATVLTGTGERLDEADVLLVDGKVQQVGKDLTANADTTIDAQGKWVTPGIIDVHSHLGAYPNPSVESHQDGNEMTSPNTAEVWVEHSIWPQDPGFNRAREGGITSLQILPGSANLFGGRGVTLKNVPAHTMQGMKFPDAPYGLKMACGENPKRVYGRKGELPMTRMGNMAGYRTAWIGAQEYKRAWDKYDADYAAGKNPEAPHRDIKYDTLRGVLEGEVRIHNHCYKAEEMAMMIDLSKEFNYHAGTFHHGIEAYKIADLLAENGSCAALWPDWWGFKMEAYDMVQENVAIVDAVKNSCAVVHSDSDTTIQRLNQEAAKVMYSANQNGFDISEQYAIKWITANAAKSLGIEDKTGSLEAGKQADVVIWNQSPFSVYAKAEQVFVDGAKVYDRNDSAFQAQSDFMLGQQ
>NC_014803.1|WP_013464749.1|1411446_1412688_+|amidohydrolase-family-protein
MKKLSRSFSLSLVAAGLLASGAVSAQSLAIINATLHTSSDQGVLESASIVMNDGKITAINPSDVKADKIIDAKGQIVTPGFIATVNQLGLVEVGAVAGSRDAGEEKAGIDFDASLAFNPRSSLIPYARKGGVTRDLITPYGGDSIFAGLASVVDLSGSFESVNKKQAALVVHLGERSKGSRAFTLQTLINKLDEHQTKASKEAKKDDAKPSAEDKIMAKVLKGDMPLLISVSRASDIVELIKVKQQFGVNIVLNGAQDAVVVKDRIAKAGIPVIISAMDNLPGSFDSLHASLNNAGILEKAGVKVLLTVGGDASHNVYQLRYDAGNAVSYGMSQQGALKAMTSNVADVFGINAGSLEVGKAADVVMWSNDPFELSSHVNKMFINGVEVSTESRQDKLRERYTTESNMPRAYTK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014803_1	1.1\|414588\|31\|NC_014803\|CRISPRCasFinder	414588-414618	31	NC_010802	Burkholderia multivorans ATCC 17616 plasmid pTGL1, complete sequence	43453-43483	9	0.71
NC_014803_1	1.1\|414588\|31\|NC_014803\|CRISPRCasFinder	414588-414618	31	NC_010070	Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence	70003-70033	9	0.71

1. spacer 1.1|414588|31|NC_014803|CRISPRCasFinder matches to NC_010802 (Burkholderia multivorans ATCC 17616 plasmid pTGL1, complete sequence) position: , mismatch: 9, identity: 0.71

ccagaatgtaggacgcgacccgtcgcgcact	CRISPR spacer
ggaagttgcaggacgcgacacgtcgcgcaga	Protospacer
  *.. **.********** *********

2. spacer 1.1|414588|31|NC_014803|CRISPRCasFinder matches to NC_010070 (Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence) position: , mismatch: 9, identity: 0.71

ccagaatgtaggacgcgacccgtcgcgcact	CRISPR spacer
ggaagttgcaggacgcgacacgtcgcgcaga	Protospacer
  *.. **.********** *********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage