CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	1 crisprs	NA	0	1	5	0
NC_017281	Campylobacter jejuni subsp. jejuni S3, complete sequence	2 crisprs	DEDDh,WYL,cas2,cas1,csa3	0	8	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017282_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017282_1

32964-33061

Orphan

Consensus_repeat	Method
TTGACTTAAATGTAATGATTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017282_1

>merge|NC_017282|1|32964-33061|CRISPRCasFinder
TTGACTTAAATGTAATATGCACTTACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTATTTTCAAATAAAATTGACTTAAATGTAATGATTTTT

>NC_017282|1|1|32964-33061|CRISPRCasFinder
TTGACTTAAATGTAATATGCACT	TACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTATTTTCAAATAAAA
TTGACTTAAATGTAATGATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017282.1\|WP_002864990.1\|33714_33993_-\|EexN-family-lipoprotein	unknown	unknown	unknown
NC_017282.1\|WP_002790553.1\|37020_38409_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_017282.1\|WP_002801148.1\|32613_32832_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_017282.1\|WP_002779624.1\|29157_29481_+\|hypothetical-protein	unknown	unknown	unknown
NC_017282.1\|WP_002790340.1\|32417_32621_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NC_017282.1\|WP_031263757.1\|39144_39756_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NC_017282.1\|WP_002779778.1\|35994_36276_-\|hypothetical-protein	unknown	unknown	unknown
NC_017282.1\|WP_002801682.1\|24735_25371_-\|hypothetical-protein	unknown	unknown	unknown
NC_017282.1\|WP_002801138.1\|29471_29879_+\|vapd	unknown	unknown	gnl\|CDD\|225846
NC_017282.1\|WP_002779777.1\|36469_37021_+\|hypothetical-protein	unknown	unknown	unknown
NC_017282.1\|WP_014517321.1\|25943_28712_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NC_017282.1\|WP_014517319.1\|24276_24702_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NC_017282.1\|WP_002779625.1\|28724_28988_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_017282.1\|WP_041176772.1\|25367_25934_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_017282.1\|WP_002823310.1\|34109_35336_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NC_017282.1\|WP_014517323.1\|29875_30490_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|184041
NC_017282.1\|WP_014517324.1\|33323_33599_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017282.1\|WP_002790553.1\|37020_38409_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	5.02045e-05
NC_017282.1\|WP_002801148.1\|32613_32832_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NC_017282.1\|WP_002779625.1\|28724_28988_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41173e-06
NC_017282.1\|WP_002790340.1\|32417_32621_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14
NC_017282.1\|WP_041176772.1\|25367_25934_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	4.49684e-39
NC_017282.1\|WP_014517319.1\|24276_24702_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	3.27567e-29
NC_017282.1\|WP_002823310.1\|34109_35336_-\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.3304e-26
NC_017282.1\|WP_014517323.1\|29875_30490_+\|recombinase-family-protein	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.06614e-37
NC_017282.1\|WP_031263757.1\|39144_39756_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.67711e-26
NC_017282.1\|WP_002801138.1\|29471_29879_+\|vapd	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	2.07007e-09
NC_017282.1\|WP_014517321.1\|25943_28712_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0

>NC_017282.1|WP_002801148.1|32613_32832_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NC_017282.1|WP_002790340.1|32417_32621_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NC_017282.1|WP_014517323.1|29875_30490_+|recombinase-family-protein
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQRELSNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIRSIWKLFYKDSGKTYDGLLWFIKKRKLKQK
>NC_017282.1|WP_002801138.1|29471_29879_+|vapd
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKEINKQAGYNKDFHGKFKEFTQKTPKNQKLKDLER
>NC_017282.1|WP_002779624.1|29157_29481_+|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NC_017282.1|WP_002779625.1|28724_28988_-|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NC_017282.1|WP_014517321.1|25943_28712_-|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLVGFSIPVFFIMKAMTKKDDFIFRLMFLKMRFFSNPASKNYYKAKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDIKNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLKKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVAQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGVNKNDFGELFLANTLILGQSGGGKTVFMNFIVDQMMKYASKDTFPDDIPEENKKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSVEDFLKLKNAATLIEQSATMVFLPNPKAKEEEYVNGIGLSYDEYMIIKGFNPAKRQFLIKRQDEKVICTLDLSSLGSENLKILSTGTAHIDTIEKIFSQENKSLDEKVLELREFYKNS
>NC_017282.1|WP_041176772.1|25367_25934_-|Rha-family-transcriptional-regulator
MSNKVLINKQEVQFGTKGNQIFCTSLDVAKVFGKRHDNVLRDIENILNDLREIGTSNDLLNFGEVVRISKTTNPKNGKLVSRKMPIYNLTRDGFSLLAMGFTGKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVTITDNPYSKEAKNVFSLNYLVDNRTPKDPKRLQ
>NC_017282.1|WP_002801682.1|24735_25371_-|hypothetical-protein
MSDKELQKEILALENDVKQLEATINVIKKRITHLKDIAWDKQSKKESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMEKEIKKHLDNPNLRGMVTTQEMLSFPKVAKGVEAEYDERYQGYSWKTKANDGSILNYGERDFGKGHRLLTAHSKTERGERGQLRQEFNDRDFHNSVESIIPQQNQSVNDFKAKLEEFSTKKTNAIKSINKEFKR
>NC_017282.1|WP_014517319.1|24276_24702_-|single-stranded-DNA-binding-protein
MNNVNLIGYLGKDFEIGTTNSGRIFAKNSLAITKRWKNERGNEESSTVWIPIVLFGKSAESASTHIRKGSQFACSGELSSSQYQDESGNTKTALSVIVSKFYWLGKKDKDDNGAQNPQIPPKEPNIDYENTNIESEETQVF
>NC_017282.1|WP_014517324.1|33323_33599_+|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHICKGLRKYKEILKSNKREEFI
>NC_017282.1|WP_002864990.1|33714_33993_-|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYKASYSKSLQNFHNEAISDEEAAKFFKKK
>NC_017282.1|WP_002823310.1|34109_35336_-|toprim-domain-containing-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKTLHNLKEFYICEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NC_017282.1|WP_002779778.1|35994_36276_-|hypothetical-protein
MLKESKLIEELKREYDEKLKKLRQKEKENKERIYKKLSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NC_017282.1|WP_002779777.1|36469_37021_+|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NC_017282.1|WP_002790553.1|37020_38409_+|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYTKDIKTGKLISKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRILQELGNKSTIRRETAQERNSMRILSKQPVVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSARNNEIKRDG
>NC_017282.1|WP_031263757.1|39144_39756_-|NYN-domain-containing-protein
MEAKELAKRLKDYVWETLRRNEDYLHRVYIYDCEPLDKNVPMPPIEKTDKSKNLSKTTTYKFRSELLNHLRKQPYFAVRLGEIDENSFQWKFRDYDKFRKILRKEIDICELTSEDFVLDIKQKGVDMKIGLDIATLANKHHAEKIILITADSDFIPAVKHARKEGIIVQLDPMRIPETQIKKGLLEHIDILSSVFINKNKNGN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16627-16678	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17167-17218	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20999-21050	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20363-20414	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8597-8648	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18200-18251	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	19036-19087	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13188-13239	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13214-13265	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	41061-41112	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4325-4376	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13627-13678	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6306-6357	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21122-21173	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18167-18218	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39851-39902	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2396-2447	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	32987-33038	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5377-5428	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6508-6559	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72105-72156	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	2968-3019	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77768-77819	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11618-11669	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	3970-4021	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	10904-10955	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30328-30379	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5071-5122	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17516-17567	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9265-9316	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33050-33101	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34680-34731	0	1.0
NC_017282_1	1.1\|32987\|52\|NC_017282\|CRISPRCasFinder	32987-33038	52	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25113-25164	1	0.981

1. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

2. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

3. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

4. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

5. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

6. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

7. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

8. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

9. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

10. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

11. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

12. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

13. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

14. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

15. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

16. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

17. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

18. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

19. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

20. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

21. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

22. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

23. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

24. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

25. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

26. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

27. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

28. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

29. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

30. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

31. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

32. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	Protospacer
****************************************************

33. spacer 1.1|32987|52|NC_017282|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 1, identity: 0.981

tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaaa	CRISPR spacer
tacattaaagtcaacaaaaattgctaaatgctcctcttattttcaaataaga	Protospacer
**************************************************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12908

Streptococcus_phage(80.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002804244.1\|2632_2899_-	hypothetical protein	NA	NA	NA	NA
WP_002790730.1\|2901_3462_-	hypothetical protein	NA	NA	NA	NA
WP_002779704.1\|3520_3787_-	hypothetical protein	A0A2R3ZY63	Campylobacter_phage	6.8e-39	90.4
WP_002779703.1\|3791_4349_-	hypothetical protein	NA	NA	NA	NA
WP_002779702.1\|4345_4858_-	hypothetical protein	NA	NA	NA	NA
WP_002790442.1\|5395_5701_-	hypothetical protein	NA	NA	NA	NA
WP_079254360.1\|5690_6353_-	relaxase/mobilization nuclease domain-containing protein	D0R0F7	Streptococcus_phage	4.9e-54	99.1
WP_002779755.1\|6487_6661_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_002779752.1\|6712_8632_-	tetracycline resistance ribosomal protection protein Tet(O)	A0A1B0RXH7	Streptococcus_phage	0.0e+00	98.3
WP_002779751.1\|8990_9170_-	hypothetical protein	NA	NA	NA	NA
WP_002790581.1\|9188_10610_-	hypothetical protein	NA	NA	NA	NA
WP_002779644.1\|10715_12908_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	3.8e-18	23.3

DBSCAN-SWA_2

24276 : 25934

Yersinia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014517319.1\|24276_24702_-	single-stranded DNA-binding protein	A9DEQ4	Yersinia_phage	1.9e-11	36.4
WP_002801682.1\|24735_25371_-	hypothetical protein	NA	NA	NA	NA
WP_041176772.1\|25367_25934_-	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	4.8e-18	48.4

DBSCAN-SWA_3

29875 : 30490

Bacteroides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014517323.1\|29875_30490_+	recombinase family protein	H2A0H0	Bacteroides_phage	3.2e-15	33.5

DBSCAN-SWA_4

34109 : 35336

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002823310.1\|34109_35336_-	toprim domain-containing protein	A0A1W6JT61	Escherichia_phage	2.3e-20	31.1

DBSCAN-SWA_5

39144 : 39756

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031263757.1\|39144_39756_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	6.2e-27	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017281

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017281_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017281_1

1397312-1397391

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017281_1

>merge|NC_017281|1|1397312-1397391|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_017281|1|1|1397312-1397391|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017281.1\|WP_014517288.1\|1389313_1391086_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NC_017281.1\|WP_002780441.1\|1399721_1400069_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_017281.1\|WP_002780449.1\|1396338_1396884_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NC_017281.1\|WP_002869578.1\|1397693_1399064_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NC_017281.1\|WP_011049978.1\|1406268_1408188_-\|hypothetical-protein	unknown	unknown	unknown
NC_017281.1\|WP_002779147.1\|1389024_1389249_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NC_017281.1\|WP_002780440.1\|1400069_1400489_-\|hypothetical-protein	unknown	unknown	unknown
NC_017281.1\|WP_002867277.1\|1410109_1411591_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|133026
NC_017281.1\|WP_011049976.1\|1395280_1396279_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_017281.1\|WP_011049975.1\|1394075_1395278_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_017281.1\|WP_002867280.1\|1404218_1406291_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NC_017281.1\|WP_002859678.1\|1393407_1394079_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_017281.1\|WP_011049974.1\|1391082_1392576_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_017281.1\|WP_002868488.1\|1399185_1399722_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NC_017281.1\|WP_002780438.1\|1400485_1401847_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_017281.1\|WP_011049977.1\|1403037_1404222_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NC_017281.1\|WP_002923484.1\|1392579_1393404_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NC_017281.1\|WP_014517287.1\|1389245_1389359_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|223447
NC_017281.1\|WP_002780436.1\|1401843_1402965_-\|hypothetical-protein	unknown	unknown	unknown
NC_017281.1\|WP_002874401.1\|1396911_1397238_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870

Protein	Function_ID	Function_description	E-value
NC_017281.1\|WP_014517288.1\|1389313_1391086_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_017281.1\|WP_002780441.1\|1399721_1400069_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.95652e-40
NC_017281.1\|WP_002780449.1\|1396338_1396884_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NC_017281.1\|WP_002869578.1\|1397693_1399064_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_017281.1\|WP_002779147.1\|1389024_1389249_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_017281.1\|WP_002867277.1\|1410109_1411591_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|133026	cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	3.14539e-64
NC_017281.1\|WP_011049976.1\|1395280_1396279_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.98861e-166
NC_017281.1\|WP_011049975.1\|1394075_1395278_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_017281.1\|WP_002867280.1\|1404218_1406291_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_017281.1\|WP_002859678.1\|1393407_1394079_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.87196e-87
NC_017281.1\|WP_011049974.1\|1391082_1392576_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.82881e-155
NC_017281.1\|WP_002868488.1\|1399185_1399722_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.17927e-91
NC_017281.1\|WP_002780438.1\|1400485_1401847_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NC_017281.1\|WP_011049977.1\|1403037_1404222_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_017281.1\|WP_002923484.1\|1392579_1393404_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_017281.1\|WP_014517287.1\|1389245_1389359_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	2.30604e-12
NC_017281.1\|WP_002874401.1\|1396911_1397238_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.56366e-37

>NC_017281.1|WP_002874401.1|1396911_1397238_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGEKHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_017281.1|WP_002780449.1|1396338_1396884_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NC_017281.1|WP_011049976.1|1395280_1396279_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNDKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKSQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVVSDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_017281.1|WP_011049975.1|1394075_1395278_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFIAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPTCSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_017281.1|WP_002859678.1|1393407_1394079_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_017281.1|WP_002923484.1|1392579_1393404_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRSLLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_017281.1|WP_011049974.1|1391082_1392576_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NC_017281.1|WP_014517288.1|1389313_1391086_+|ferrous-iron-transport-protein-B
MQSQYESRKFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIINVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCEARLPVYVLFIGTFYPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NC_017281.1|WP_014517287.1|1389245_1389359_+|50S-ribosome-binding-GTPase
MKKIKIALVGQPNVGKSLLINALCKANMKVGNLAELL
>NC_017281.1|WP_002779147.1|1389024_1389249_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_017281.1|WP_002869578.1|1397693_1399064_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLAPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLNDDIEENLEVEKYDILSLYVKFICEQFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIRALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFDDIKARFKN
>NC_017281.1|WP_002868488.1|1399185_1399722_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKTDKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_017281.1|WP_002780441.1|1399721_1400069_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NC_017281.1|WP_002780440.1|1400069_1400489_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NC_017281.1|WP_002780438.1|1400485_1401847_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_017281.1|WP_002780436.1|1401843_1402965_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHVFNIKVDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_017281.1|WP_011049977.1|1403037_1404222_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIDETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_017281.1|WP_002867280.1|1404218_1406291_-|capsular-polysaccharide-biosynthesis-protein
MIKERFLSSFKISREYSYLYIFCYKFFSRIKDSDVFVGWGRKKSGLKAMNLAKKHKARFILLEDGFIRSLNLGVENSPSFSIVKDDIGIYYDATVPSKLENLLNTYEFKDKETKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPVVLLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKTGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKYIKLVIDFKTFMLRKIRRFYEFLAKK
>NC_017281.1|WP_011049978.1|1406268_1408188_-|hypothetical-protein
MIKEKEKEIFSIIERNLQLWNFDLVESIYYTNYKLSVNIETKFYNFLYLTGNIGKYILEEERLNDEILYTRKILLNGNINYQNIKDNLYERVSKDILSCYLLNKNFYFCDTNDSIDNLLDLYKNYIHGSSNIITRNYFIATLIRFCVILGKQELFYIKEGFDLRYYLLQKMYDINTSGSKIYHSLFIDELQDQLKNGNIKSEVKFAICMYGMLRGDWKGTLEKNIKIAKEQLNADIFLFTWSKKQDWQNITTGGDCWVDRKLAKDFFQESPKEILKTSDLKKNMPNVFSRLNHDIFSKYNYSELKNLIEYYENFRGLLVEDQQKVQQDESLSSNIEFMYYAIYKSFKILEKYEESNNIKYDYIIHMRVDSEILIEGCLKNEIIKLRSNNIYDLKTLAGNGVGNVVGSRNVINIYSSLYVHRKFYKNLMIANTKDPHEMFFKWLSFNGIYSIKPNFKIEHRYTKAQNGYIMPDISKELYLDLLNLRDKFDTKKLDKFIYFFQKVTKKYCKEKLTDSVYFSAKSRIKNHLAYQFGLTMIQYSRNILGYVKMPFILFQTFRQYQNKKKEYYERISENPKFILPKIKEYADYQEAIKLKESITYRLGQALIQANKNWYGGGYIKLLFEIRRLKKEYYDKRTIS
>NC_017281.1|WP_002867277.1|1410109_1411591_-|NTP-transferase-domain-containing-protein
MNIIIPATGIGKRFKEAGYKDLKPFIKVIEDKVILDYVVECFDVRNDVYYFIAQECEKNKFEDFILSRKIHAKVIVYKGGKLGPAGSLYGVASQLQDILDEEVIISYCDFGQEWNYKDFLQFTQENLDVQAIIPCYTGYHPHLLPLENVYAACKMYDNTYKAYKVIEKYNSKNKFEEYYSSGIYYFRTLKLAIEAIKKQIKARDMVFGEYYISMTNNYLENVLCYPFIEKFYQFGTPKDFEYAKKKLNSQDVNNEKIKIQNTIILSAGRGERFLNLNFNQPKPFLPLGKTSIIENIIDTLKDVETKIICVGAQDHKKYWESIKQEVRFVKPNKIGAAYSYKESCGNLSGDVLILPCDLIAKHITKEFIRLQKEYEVIVFVTHASKYNVNNSHYFTWVDGENNKIDNIFVKNRPNDANLVMIGSFYFKANSLLLEYIDKIFQEDIKTNGEFYIDNVFELLIKKHKIGYMIVDNYFSYGTPEEYLENQYWFKVKS

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Crispr_ID: NC_017281_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017281_2

1497559-1497857

Unclear

Consensus_repeat	Method
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

4 spacers

cas2,cas1

The CRISPR arrays of NC_017281_2

>merge|NC_017281|2|1497559-1497857|CRISPRCasFinder,PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCCATTCTCATGAAATATTTAGCCATTATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGGTAGTAGAATTATCTTTGCTGGTATTAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGGTAGTAGAATTATCTTTGCTGGTATTAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCTAAAATTGTTTCATTTTCATTAGTAGCTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017281|2|2|1497559-1497857|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATGAAATATTTAGCCATTATTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAATG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAATG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCTAAAATTGTTTCATTTTCATTAGTAGCTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017281|2|1|1497623-1497857|PILER-CR
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCTAAAATTGTTTCATTTTCATTAGTAGC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017281.1\|WP_011049993.1\|1488363_1491168_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NC_017281.1\|WP_171770385.1\|1498001_1498415_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_017281.1\|WP_002803269.1\|1491167_1491359_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NC_017281.1\|WP_002867217.1\|1506995_1508033_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_017281.1\|WP_002912466.1\|1496247_1497438_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NC_017281.1\|WP_002855377.1\|1506267_1506999_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NC_017281.1\|WP_014517296.1\|1493623_1495165_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NC_017281.1\|WP_014517298.1\|1498425_1499316_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_017281.1\|WP_002851546.1\|1508097_1508547_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_017281.1\|WP_002867223.1\|1495388_1495832_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NC_017281.1\|WP_002869804.1\|1495828_1496245_+\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214874
NC_017281.1\|WP_079254356.1\|1502813_1503872_+\|C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NC_017281.1\|WP_002867225.1\|1492351_1493500_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NC_017281.1\|WP_002867218.1\|1505543_1506293_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_017281.1\|WP_002860682.1\|1508673_1509894_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NC_017281.1\|WP_002779488.1\|1495166_1495388_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NC_017281.1\|WP_002867219.1\|1503891_1504881_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_017281.1\|WP_002867228.1\|1487725_1488367_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NC_017281.1\|WP_002851502.1\|1491333_1492047_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NC_017281.1\|WP_002860686.1\|1504941_1505547_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620

Protein	Function_ID	Function_description	E-value
NC_017281.1\|WP_011049993.1\|1488363_1491168_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_017281.1\|WP_171770385.1\|1498001_1498415_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.3054e-55
NC_017281.1\|WP_002803269.1\|1491167_1491359_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
NC_017281.1\|WP_002867217.1\|1506995_1508033_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.91517e-32
NC_017281.1\|WP_002912466.1\|1496247_1497438_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	9.65163e-141
NC_017281.1\|WP_002855377.1\|1506267_1506999_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NC_017281.1\|WP_014517296.1\|1493623_1495165_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	7.51689e-120
NC_017281.1\|WP_014517298.1\|1498425_1499316_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	8.06293e-120
NC_017281.1\|WP_002851546.1\|1508097_1508547_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NC_017281.1\|WP_002867223.1\|1495388_1495832_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	2.25273e-43
NC_017281.1\|WP_002869804.1\|1495828_1496245_+\|GyrI-like-domain-containing-protein	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	2.37716e-11
NC_017281.1\|WP_079254356.1\|1502813_1503872_+\|C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	2.28664e-36
NC_017281.1\|WP_002867225.1\|1492351_1493500_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_017281.1\|WP_002867218.1\|1505543_1506293_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.07556e-92
NC_017281.1\|WP_002860682.1\|1508673_1509894_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NC_017281.1\|WP_002779488.1\|1495166_1495388_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NC_017281.1\|WP_002867219.1\|1503891_1504881_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_017281.1\|WP_002867228.1\|1487725_1488367_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	5.50952e-57
NC_017281.1\|WP_002851502.1\|1491333_1492047_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NC_017281.1\|WP_002860686.1\|1504941_1505547_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69

>NC_017281.1|WP_002912466.1|1496247_1497438_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NC_017281.1|WP_002869804.1|1495828_1496245_+|GyrI-like-domain-containing-protein
MIQEIEEFSIYGVSVKTDEELESDLNSSLIFPLWKKFHSIFGAPDEIYSVYYDYKNTHKLEYKICVGMKNPHEKGEKICIKGGKYMLFEDSGKPEIIAPKLWQNINEFFKNSSLQRKFDTDFEFYTTNKTQIYISMKE
>NC_017281.1|WP_002867223.1|1495388_1495832_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLK
>NC_017281.1|WP_002779488.1|1495166_1495388_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NC_017281.1|WP_014517296.1|1493623_1495165_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDKMMVEEEPNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEKLRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NC_017281.1|WP_002867225.1|1492351_1493500_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NC_017281.1|WP_002851502.1|1491333_1492047_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NC_017281.1|WP_002803269.1|1491167_1491359_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>NC_017281.1|WP_011049993.1|1488363_1491168_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQKGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NC_017281.1|WP_002867228.1|1487725_1488367_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIRGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NC_017281.1|WP_171770385.1|1498001_1498415_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NC_017281.1|WP_014517298.1|1498425_1499316_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSISSALFNAFARHKIILLTYDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NC_017281.1|WP_079254356.1|1502813_1503872_+|C4-dicarboxylate-transporter-DcuC
MALKIVISSYAGLLLLACIYPVLISLKIRPITTVCALSLIALDYDPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFLHTLSLVTCCIFIYSIFFYYQARCCEANFVRISLVFLVEFARHRNARKLGEDMMVILKAMAKIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGIAPITLVLPVEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIKK
>NC_017281.1|WP_002867219.1|1503891_1504881_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYIIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NC_017281.1|WP_002860686.1|1504941_1505547_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NC_017281.1|WP_002867218.1|1505543_1506293_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NC_017281.1|WP_002855377.1|1506267_1506999_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NC_017281.1|WP_002867217.1|1506995_1508033_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRTKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NC_017281.1|WP_002851546.1|1508097_1508547_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NC_017281.1|WP_002860682.1|1508673_1509894_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MN530981	Campylobacter phage DA10, complete genome	21921-21949	0	1.0
NC_017281_2	2.2\|1497660\|31\|NC_017281\|CRISPRCasFinder	1497660-1497690	31	MN530981	Campylobacter phage DA10, complete genome	19768-19798	1	0.968
NC_017281_2	2.3\|1497726\|31\|NC_017281\|CRISPRCasFinder	1497726-1497756	31	MN530981	Campylobacter phage DA10, complete genome	19768-19798	1	0.968
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MN530981	Campylobacter phage DA10, complete genome	21921-21951	1	0.968
NC_017281_2	2.5\|1497660\|29\|NC_017281\|PILER-CR	1497660-1497688	29	MN530981	Campylobacter phage DA10, complete genome	19770-19798	1	0.966
NC_017281_2	2.6\|1497726\|29\|NC_017281\|PILER-CR	1497726-1497754	29	MN530981	Campylobacter phage DA10, complete genome	19770-19798	1	0.966
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP013857	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, * SEQUENCING IN PROGRESS *	9939-9967	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP013862	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, * SEQUENCING IN PROGRESS *	5460-5488	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP014471	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, * SEQUENCING IN PROGRESS *, 8 ordered pieces	14292-14320	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP014470	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, * SEQUENCING IN PROGRESS *, 7 ordered pieces	18048-18076	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP013858	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, * SEQUENCING IN PROGRESS *	5460-5488	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	JX519265	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence	21009-21037	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	AP013859	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, * SEQUENCING IN PROGRESS *	2838-2866	5	0.828
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NC_007392	Spiroplasma citri plasmid pSci6	34900-34928	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	33195-33223	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	53051-53079	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	54325-54353	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	13986-14014	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	23344-23372	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	15255-15283	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	33004-33032	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	13512-13540	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	34007-34035	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP016481	Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence	38709-38737	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	107665-107693	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MN693340	Marine virus AFVG_25M356, complete genome	12621-12649	6	0.793
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MN830253	Lactobacillus phage JNU_P5, complete genome	30747-30775	6	0.793
NC_017281_2	2.1\|1497594\|31\|NC_017281\|CRISPRCasFinder	1497594-1497624	31	MN855705	Bacteriophage sp. isolate 119, complete genome	7622-7652	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NC_007392	Spiroplasma citri plasmid pSci6	34900-34930	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	33195-33225	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	53051-53081	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	54323-54353	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	13984-14014	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	23342-23372	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	15253-15283	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	33002-33032	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	13512-13542	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	184529-184559	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP016481	Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence	38707-38737	7	0.774
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	107663-107693	7	0.774
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MG945457	UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome	1654-1682	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	184531-184559	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_LR214984	Mycoplasma cynos strain NCTC10142 plasmid 11	2247-2275	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_LR214984	Mycoplasma cynos strain NCTC10142 plasmid 11	3238-3266	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	693702-693730	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MK504443	Lactobacillus phage 521B, complete genome	64966-64994	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	MK448734	Streptococcus phage Javan347, complete genome	17945-17973	7	0.759
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NC_049857	Lactococcus phage P1048, complete genome	102543-102571	7	0.759
NC_017281_2	2.2\|1497660\|31\|NC_017281\|CRISPRCasFinder	1497660-1497690	31	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	42566-42596	8	0.742
NC_017281_2	2.2\|1497660\|31\|NC_017281\|CRISPRCasFinder	1497660-1497690	31	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	106942-106972	8	0.742
NC_017281_2	2.3\|1497726\|31\|NC_017281\|CRISPRCasFinder	1497726-1497756	31	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	42566-42596	8	0.742
NC_017281_2	2.3\|1497726\|31\|NC_017281\|CRISPRCasFinder	1497726-1497756	31	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	106942-106972	8	0.742
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MN693340	Marine virus AFVG_25M356, complete genome	12619-12649	8	0.742
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MN830253	Lactobacillus phage JNU_P5, complete genome	30745-30775	8	0.742
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	53392-53420	8	0.724
NC_017281_2	2.7\|1497792\|29\|NC_017281\|PILER-CR	1497792-1497820	29	LR214966	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12	32979-33007	8	0.724
NC_017281_2	2.1\|1497594\|31\|NC_017281\|CRISPRCasFinder	1497594-1497624	31	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	46333-46363	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MG945457	UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome	1652-1682	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	53392-53422	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MK504443	Lactobacillus phage 521B, complete genome	64964-64994	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	MK448734	Streptococcus phage Javan347, complete genome	17943-17973	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	NC_049857	Lactococcus phage P1048, complete genome	102543-102573	9	0.71
NC_017281_2	2.4\|1497792\|31\|NC_017281\|CRISPRCasFinder	1497792-1497822	31	KT997847	Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence	12245-12275	9	0.71
NC_017281_1	1.1\|1397335\|34\|NC_017281\|CRISPRCasFinder	1397335-1397368	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgtttcattttcattagtagc	Protospacer
*****************************

2. spacer 2.2|1497660|31|NC_017281|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
ggtagtagaattatctttgctggtatcaatg	Protospacer
**************************.****

3. spacer 2.3|1497726|31|NC_017281|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
ggtagtagaattatctttgctggtatcaatg	Protospacer
**************************.****

4. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgtttcattttcattagtagcta	Protospacer
******************************.

5. spacer 2.5|1497660|29|NC_017281|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

ggtagtagaattatctttgctggtattaa	CRISPR spacer
ggtagtagaattatctttgctggtatcaa	Protospacer
**************************.**

6. spacer 2.6|1497726|29|NC_017281|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

ggtagtagaattatctttgctggtattaa	CRISPR spacer
ggtagtagaattatctttgctggtatcaa	Protospacer
**************************.**

7. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP013857 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

8. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP013862 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

9. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP014471 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

10. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP014470 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

11. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP013858 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

12. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to JX519265 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

13. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to AP013859 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

14. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

15. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

16. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

17. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

18. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

19. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

20. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

21. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

22. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

23. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc--	CRISPR spacer
tctaaaattatttcattttca--aattgttg	Protospacer
*********.***********  *.* *.

24. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP016481 (Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgattcaatttcattcaaaga	Protospacer
********** **** ******* . **

25. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
actagaattgtttcattttcactattttc	Protospacer
 ***.****************.** *  *

26. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MN693340 (Marine virus AFVG_25M356, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattatttcatttccatttagatc	Protospacer
*********.********.**** . * *

27. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaatagtgtcattttcatttgatcc	Protospacer
******** ** *********** *   *

28. spacer 2.1|1497594|31|NC_017281|CRISPRCasFinder matches to MN855705 (Bacteriophage sp. isolate 119, complete genome) position: , mismatch: 7, identity: 0.774

tccatt--ctcatgaaatatttagccattattg	CRISPR spacer
--gattaaatcatgaaagagttagccattattt	Protospacer
   ***   ******** * ************

29. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

30. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

31. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

32. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

33. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

34. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

35. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

36. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

37. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

38. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.774

---tctaaaattgtttcattttcattagtagctg	CRISPR spacer
atgttt---gttgtttcattttcattagaaggtg	Protospacer
   *.*   .****************** ** **

39. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP016481 (Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgattcaatttcattcaaagata	Protospacer
********** **** ******* . ** *.

40. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
actagaattgtttcattttcactattttctt	Protospacer
 ***.****************.** *  **

41. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MG945457 (UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattttttctttttcattatccat	Protospacer
********* **** ********* . ..

42. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.759

---tctaaaattgtttcattttcattagtagc	CRISPR spacer
atgttt---gttgtttcattttcattagaagg	Protospacer
   *.*   .****************** **

43. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_LR214984 (Mycoplasma cynos strain NCTC10142 plasmid 11) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

44. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_LR214984 (Mycoplasma cynos strain NCTC10142 plasmid 11) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

45. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

46. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttagtaattgttttattttcaatagtagt	Protospacer
*. . ********.******* ******.

47. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgtttctttatcattctcttc	Protospacer
************** ** *****  .  *

48. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttattaagtgtttcaatttcattagtaga	Protospacer
*.   ** ******* ************

49. spacer 2.2|1497660|31|NC_017281|CRISPRCasFinder matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

50. spacer 2.2|1497660|31|NC_017281|CRISPRCasFinder matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

51. spacer 2.3|1497726|31|NC_017281|CRISPRCasFinder matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

52. spacer 2.3|1497726|31|NC_017281|CRISPRCasFinder matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

53. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MN693340 (Marine virus AFVG_25M356, complete genome) position: , mismatch: 8, identity: 0.742

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattatttcatttccatttagatcgc	Protospacer
*********.********.**** . * *

54. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 8, identity: 0.742

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaatagtgtcattttcatttgatccga	Protospacer
******** ** *********** *   * .

55. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 8, identity: 0.724

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatttttcattttcattttggat	Protospacer
******* * *************   ...

56. spacer 2.7|1497792|29|NC_017281|PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.724

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttatcaattgtttcattttcatttgtttt	Protospacer
*.   ****************** **  .

57. spacer 2.1|1497594|31|NC_017281|CRISPRCasFinder matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 9, identity: 0.71

tccattctcatgaaatatttagccattattg	CRISPR spacer
gtttctcccatgagatatttagccattagtc	Protospacer
 .. .**.*****.************** *

58. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MG945457 (UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattttttctttttcattatccataa	Protospacer
********* **** ********* . .. .

59. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaaatttttcattttcattttggatag	Protospacer
******* * *************   ... *

60. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ttagtaattgttttattttcaatagtagtgt	Protospacer
*. . ********.******* ******.

61. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgtttctttatcattctcttcaa	Protospacer
************** ** *****  .  * .

62. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ttattaagtgtttcaatttcattagtagaga	Protospacer
*.   ** ******* ************  .

63. spacer 2.4|1497792|31|NC_017281|CRISPRCasFinder matches to KT997847 (Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ataacccttctttcattttcattaggagcta	Protospacer
 . *   ** *************** ****.

64. spacer 1.1|1397335|34|NC_017281|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

619600 : 702088

Campylobacter_phage(40.0%)

terminase,integrase,transposase,tRNA,plate,tail,head,protease

attL 611992:612011|attR 679623:679642

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
611992:612011	attL	NA	NA	NA	NA
WP_002867647.1\|619600_620920_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	2.3e-39	28.4
WP_002781630.1\|620916_621459_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002781628.1\|621458_621902_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002867646.1\|621914_623135_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002864726.1\|623290_623536_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002867644.1\|623532_623940_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002855252.1\|623932_624661_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	31.8
WP_002854994.1\|624660_625911_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_011049757.1\|626074_627499_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_014517212.1\|631606_632215_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_011049758.1\|634014_635988_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_002852327.1\|636141_636372_+	hypothetical protein	NA	NA	NA	NA
WP_002854947.1\|636361_636604_+	hypothetical protein	NA	NA	NA	NA
WP_014517213.1\|636600_637038_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002867637.1\|637019_638873_+	primosomal protein N'	NA	NA	NA	NA
WP_002870227.1\|640500_641304_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002876361.1\|641402_641672_+	hypothetical protein	NA	NA	NA	NA
WP_002870225.1\|641687_641879_+	hypothetical protein	NA	NA	NA	NA
WP_014517215.1\|641879_643994_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002790751.1\|644082_644940_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.6e-26	31.2
WP_002795448.1\|644936_645128_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|645124_645310_+	hypothetical protein	NA	NA	NA	NA
WP_002865075.1\|645365_645797_+	hypothetical protein	NA	NA	NA	NA
WP_002865074.1\|645870_646209_+	hypothetical protein	NA	NA	NA	NA
WP_014517217.1\|646404_646890_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	3.2e-18	33.3
WP_002791416.1\|646886_647066_+	hypothetical protein	NA	NA	NA	NA
WP_002791414.1\|647129_647402_+	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|647398_647785_+	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002864977.1\|647899_648079_+	hypothetical protein	NA	NA	NA	NA
WP_002790255.1\|648075_648504_+	hypothetical protein	NA	NA	NA	NA
WP_002918730.1\|648555_648747_+	hypothetical protein	NA	NA	NA	NA
WP_014517218.1\|648733_649213_+	phage virion morphogenesis protein	A7YGZ0	Campylobacter_phage	2.3e-05	29.6
WP_002870187.1\|649351_650485_-	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_014517219.1\|650477_651857_-	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	9.7e-12	22.0
WP_002865465.1\|651853_653380_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_002790261.1\|653469_653784_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|653895_654144_-	hypothetical protein	NA	NA	NA	NA
WP_002784498.1\|654140_654482_-	hypothetical protein	NA	NA	NA	NA
WP_002870185.1\|654492_654882_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	4.2e-21	45.9
WP_002790266.1\|654871_655237_-	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|655233_655587_-	hypothetical protein	NA	NA	NA	NA
WP_014517220.1\|655583_655895_-	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|655894_656782_-\|head	Mu-like prophage major head subunit gpT family protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_002790001.1\|656781_657822_-	hypothetical protein	NA	NA	NA	NA
WP_002865847.1\|657952_658417_+	DUF1804 family protein	NA	NA	NA	NA
WP_002827116.1\|658413_659046_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	4.6e-09	35.6
WP_002784486.1\|659054_659246_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|659242_659533_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_014517221.1\|659529_660696_+\|plate	baseplate J/gp47 family protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002864870.1\|660692_661313_+\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_002873735.1\|661312_662392_+\|tail	phage tail protein	A7YGV0	Campylobacter_phage	3.9e-149	100.0
WP_014517222.1\|662401_662908_+	DUF4376 domain-containing protein	A7YGY7	Campylobacter_phage	3.5e-84	95.8
WP_002873737.1\|662904_663276_+	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	1.7e-67	99.2
WP_014517223.1\|663400_664414_+	hypothetical protein	A7YGH6	Campylobacter_phage	7.7e-192	99.1
WP_014517224.1\|664424_665615_+\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	3.9e-195	98.7
WP_002789981.1\|665737_666253_+\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	2.6e-10	26.3
WP_002876453.1\|666263_666500_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002876454.1\|666607_666838_-	hypothetical protein	NA	NA	NA	NA
WP_014517225.1\|666867_668832_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002870151.1\|668833_669208_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002789964.1\|669200_669392_+\|tail	tail protein X	NA	NA	NA	NA
WP_014517226.1\|669385_670354_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_014517227.1\|670455_671271_+	DNA adenine methylase	A7YGG5	Campylobacter_phage	7.2e-148	96.7
WP_002784651.1\|671298_671586_-	hypothetical protein	A7YGG4	Campylobacter_phage	1.6e-46	97.9
WP_002784648.1\|671665_671860_-	hypothetical protein	A7YG72	Campylobacter_phage	1.1e-27	96.9
WP_002784647.1\|671869_672190_-	hypothetical protein	A7YG71	Campylobacter_phage	1.6e-50	97.2
WP_014517228.1\|672270_672900_-	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	2.8e-59	98.2
WP_002854766.1\|673191_674265_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_002864738.1\|674294_674993_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_079254348.1\|675082_676588_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_002864740.1\|676601_677792_+	acetate kinase	NA	NA	NA	NA
WP_011049761.1\|677819_681572_-	Eco57I restriction-modification methylase domain-containing protein	A0A1B1IUC6	uncultured_Mediterranean_phage	1.3e-45	24.1
679623:679642	attR	NA	NA	NA	NA
WP_002852223.1\|681721_682213_+	hypothetical protein	NA	NA	NA	NA
WP_002867634.1\|682200_683139_-	hypothetical protein	NA	NA	NA	NA
WP_079254349.1\|683138_684077_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002867632.1\|684235_685726_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_002859607.1\|685722_687111_+	cell division protein FtsA	NA	NA	NA	NA
WP_002852071.1\|687126_688239_+	cell division protein FtsZ	NA	NA	NA	NA
WP_002852052.1\|688394_689207_+	flagellar hook-basal body protein	NA	NA	NA	NA
WP_002852142.1\|689235_690027_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_002867631.1\|690092_691523_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_002867858.1\|691725_692421_+	hypothetical protein	NA	NA	NA	NA
WP_002867857.1\|692417_693671_+	U32 family peptidase	Q6DW11	Phage_TP	6.1e-37	30.5
WP_002852194.1\|693671_694166_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_002867856.1\|694175_694712_+	DUF3972 domain-containing protein	NA	NA	NA	NA
WP_002867855.1\|694723_695587_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_002867854.1\|695573_696299_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_002856929.1\|696308_697025_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_002867853.1\|697021_698179_+	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_014517230.1\|698159_698912_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.8e-05	31.8
WP_002859618.1\|698979_700317_+	signal recognition particle protein	NA	NA	NA	NA
WP_002852274.1\|700382_700610_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_002852144.1\|700612_700855_+	KH domain-containing protein	NA	NA	NA	NA
WP_002867850.1\|700847_701387_+	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_002885710.1\|701383_702088_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1222775 : 1276797

Campylobacter_phage(92.73%)

integrase,terminase,tail,tRNA,head,portal,capsid,protease

attL 1237307:1237324|attR 1253873:1253890

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002867346.1\|1222775_1224617_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002867345.1\|1224613_1226593_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	1.2e-18	33.6
WP_002857924.1\|1226592_1227684_-	nitronate monooxygenase	NA	NA	NA	NA
WP_002874423.1\|1227680_1228886_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	6.5e-28	29.9
WP_002867343.1\|1228897_1231093_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.4e-07	44.0
WP_002853464.1\|1231076_1231301_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002854049.1\|1231311_1232031_-	UMP kinase	NA	NA	NA	NA
WP_002867342.1\|1232082_1233276_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002867341.1\|1233272_1234079_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002856386.1\|1234065_1234731_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-17	34.8
WP_011049923.1\|1234800_1235979_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_074482847.1\|1235978_1237214_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_002867338.1\|1237158_1238127_-	RluA family pseudouridine synthase	NA	NA	NA	NA
1237307:1237324	attL	NA	NA	NA	NA
WP_002887899.1\|1238204_1239305_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_002787311.1\|1239643_1240819_+\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
WP_002787309.1\|1240815_1241022_-	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787307.1\|1241023_1241377_-	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787306.1\|1241394_1242150_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	9.6e-147	100.0
WP_002787304.1\|1242127_1242394_-	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_002858334.1\|1242377_1242749_-	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_002787300.1\|1242749_1242974_-	hypothetical protein	X2KM06	Campylobacter_phage	1.8e-37	100.0
WP_002787298.1\|1242982_1243744_-	hypothetical protein	X2KQ81	Campylobacter_phage	1.4e-124	100.0
WP_002787295.1\|1243680_1243995_-	hypothetical protein	X2KR17	Campylobacter_phage	1.6e-50	100.0
WP_002787293.1\|1244073_1244394_-	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_002787289.1\|1244780_1245017_-	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787287.1\|1245030_1245798_-	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787283.1\|1245935_1246166_-	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787281.1\|1246131_1246395_-	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787279.1\|1246451_1246739_-	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_002788580.1\|1247952_1248237_-	hypothetical protein	X2KRM3	Campylobacter_phage	2.3e-40	100.0
WP_002858450.1\|1248233_1248437_-	hypothetical protein	X2KRB3	Campylobacter_phage	6.3e-29	100.0
WP_002788578.1\|1248650_1249034_+	helix-turn-helix domain-containing protein	X2KPM6	Campylobacter_phage	1.0e-43	100.0
WP_002788577.1\|1249037_1249355_+	hypothetical protein	X2KX12	Campylobacter_phage	2.5e-48	100.0
WP_002788576.1\|1249356_1250337_+	DNA polymerase III subunit epsilon	X2KQX9	Campylobacter_phage	2.5e-187	100.0
WP_002858053.1\|1250346_1250967_+	hypothetical protein	X2KQS5	Campylobacter_phage	6.1e-107	100.0
WP_002858176.1\|1250968_1252747_+	NTPase KAP	X2KLG0	Campylobacter_phage	0.0e+00	100.0
WP_002905815.1\|1252801_1252999_-	hypothetical protein	X2KPN2	Campylobacter_phage	1.5e-27	100.0
WP_002857883.1\|1252916_1253336_-	hypothetical protein	X2KX19	Campylobacter_phage	6.3e-55	100.0
WP_002858146.1\|1253397_1253856_-	hypothetical protein	X2KQY5	Campylobacter_phage	2.0e-83	100.0
WP_002801920.1\|1253904_1255188_-	hypothetical protein	X2KRN1	Campylobacter_phage	1.3e-239	100.0
1253873:1253890	attR	NA	NA	NA	NA
WP_002801918.1\|1255184_1255556_-	DUF1353 domain-containing protein	X2KRC3	Campylobacter_phage	9.7e-68	100.0
WP_002801917.1\|1255545_1256010_-	hypothetical protein	X2KM25	Campylobacter_phage	5.1e-74	100.0
WP_002789149.1\|1256006_1256642_-	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.3e-96	100.0
WP_014517274.1\|1256654_1257104_-	hypothetical protein	X2KQT3	Campylobacter_phage	8.7e-79	98.7
WP_002858267.1\|1257105_1258671_-	hypothetical protein	X2KRN6	Campylobacter_phage	1.1e-205	100.0
WP_002788297.1\|1258663_1259296_-	hypothetical protein	X2KRC7	Campylobacter_phage	7.9e-110	100.0
WP_002788295.1\|1259292_1259610_-\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	9.2e-51	100.0
WP_002788293.1\|1259622_1260060_-\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_002788291.1\|1260056_1260308_-	hypothetical protein	X2KLU2	Campylobacter_phage	3.7e-18	100.0
WP_002788288.1\|1260318_1261485_-\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_002788287.1\|1261501_1262059_-\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788286.1\|1262144_1263014_-	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_002857954.1\|1263026_1268753_-	hypothetical protein	X2KLJ2	Campylobacter_phage	0.0e+00	99.9
WP_002788283.1\|1268812_1269151_+	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_002788282.1\|1269142_1269358_-	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788281.1\|1269438_1269795_-	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002858135.1\|1269791_1270772_-	hypothetical protein	X2KRA7	Campylobacter_phage	2.3e-180	100.0
WP_002788276.1\|1270943_1271294_-	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002788274.1\|1271294_1271837_-	HK97 gp10 family phage protein	X2KRF4	Campylobacter_phage	3.7e-92	98.9
WP_002788272.1\|1271833_1273006_-\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002788265.1\|1273165_1273600_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KQB2	Campylobacter_phage	3.2e-78	100.0
WP_002788263.1\|1273654_1275280_-\|terminase	terminase large subunit	X2KXM1	Campylobacter_phage	0.0e+00	99.8
WP_002788261.1\|1275283_1275919_-\|terminase	P27 family phage terminase small subunit	X2KRQ1	Campylobacter_phage	1.3e-109	99.1
WP_002788260.1\|1276178_1276520_-	HNH endonuclease	X2KRE4	Campylobacter_phage	1.1e-62	100.0
WP_002788257.1\|1276506_1276797_-	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4

DBSCAN-SWA_3

1410109 : 1418521

Bodo_saltans_virus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002867277.1\|1410109_1411591_-	NTP transferase domain-containing protein	A0A2H4UUJ1	Bodo_saltans_virus	3.0e-51	29.7
WP_002867276.1\|1411592_1412318_-	class II aldolase/adducin family protein	A0A2H4UUW4	Bodo_saltans_virus	1.0e-12	27.5
WP_002867275.1\|1412304_1413606_-	HAD-IA family hydrolase	A0A2H4UUR3	Bodo_saltans_virus	3.8e-26	35.6
WP_002867274.1\|1413598_1414192_-	hypothetical protein	NA	NA	NA	NA
WP_002870158.1\|1414166_1414847_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	2.5e-08	25.1
WP_002860371.1\|1414834_1415440_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_014517291.1\|1415427_1416447_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	5.1e-58	39.9
WP_002867271.1\|1416443_1417475_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.5e-146	73.3
WP_002867270.1\|1417471_1418521_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	2.5e-76	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017282

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017281

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection