CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014830	Intrasporangium calvum DSM 43043, complete sequence	4 crisprs	csa3,RT,cas3,DEDDh,cas4,WYL,DinG	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014830_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014830_1

471397-471506

Orphan

Consensus_repeat	Method
AGGCTCACGCACTGACCCGTCCAGCGGGTCAGTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014830_1

>merge|NC_014830|1|471397-471506|CRISPRCasFinder
AGGCTCACGCACTGACCCGTCCAGCGGGTCAGTGCGGCTTGCTGTTCACAGTGCGCTCGCAGTGGGGGCCGCGCAGGCTCACGCACTGACCTGTCCAGCGGGTCAGTGCG

>NC_014830|1|1|471397-471506|CRISPRCasFinder
AGGCTCACGCACTGACCCGTCCAGCGGGTCAGTGCG	GCTTGCTGTTCACAGTGCGCTCGCAGTGGGGGCCGCGC
AGGCTCACGCACTGACCTGTCCAGCGGGTCAGTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014830.1\|WP_013491311.1\|482308_482779_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NC_014830.1\|WP_013491296.1\|465081_465738_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_014830.1\|WP_013491292.1\|459510_460722_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NC_014830.1\|WP_013491299.1\|469298_469973_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_014830.1\|WP_013491304.1\|473686_473953_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013491305.1\|474000_474420_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_052337947.1\|480650_482312_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NC_014830.1\|WP_013491302.1\|471575_472334_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_014830.1\|WP_013491300.1\|470036_470636_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_014830.1\|WP_013491301.1\|470717_471368_+\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NC_014830.1\|WP_013491306.1\|474501_475191_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013491297.1\|466096_468436_+\|DNA-polymerase-III-subunit-gamma-and-tau	unknown	unknown	gnl\|CDD\|236090
NC_014830.1\|WP_013491307.1\|475255_478528_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_014830.1\|WP_013491293.1\|460737_461967_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|234945
NC_014830.1\|WP_041307159.1\|468496_469252_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NC_014830.1\|WP_013491308.1\|478647_479211_-\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013491303.1\|472330_473602_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_014830.1\|WP_148236455.1\|463675_465067_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372724
NC_014830.1\|WP_013491291.1\|457935_459246_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NC_014830.1\|WP_013491309.1\|479305_480343_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099

Protein	Function_ID	Function_description	E-value
NC_014830.1\|WP_013491296.1\|465081_465738_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.74894e-37
NC_014830.1\|WP_013491292.1\|459510_460722_+\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.19284e-63
NC_014830.1\|WP_013491299.1\|469298_469973_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.0752e-56
NC_014830.1\|WP_052337947.1\|480650_482312_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	4.44361e-94
NC_014830.1\|WP_013491302.1\|471575_472334_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.85585e-08
NC_014830.1\|WP_013491300.1\|470036_470636_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.53866e-118
NC_014830.1\|WP_013491301.1\|470717_471368_+\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	2.52214e-34
NC_014830.1\|WP_013491297.1\|466096_468436_+\|DNA-polymerase-III-subunit-gamma-and-tau	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0
NC_014830.1\|WP_013491307.1\|475255_478528_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.4914e-48
NC_014830.1\|WP_013491293.1\|460737_461967_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|234945	PRK01346, PRK01346, enhanced intracellular survival protein Eis.	2.17765e-29
NC_014830.1\|WP_041307159.1\|468496_469252_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	1.40189e-21
NC_014830.1\|WP_013491311.1\|482308_482779_+\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.51029e-06
NC_014830.1\|WP_013491303.1\|472330_473602_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_014830.1\|WP_148236455.1\|463675_465067_-\|hypothetical-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0.000143273
NC_014830.1\|WP_013491291.1\|457935_459246_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.12201e-50
NC_014830.1\|WP_013491309.1\|479305_480343_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	4.71033e-64

>NC_014830.1|WP_013491301.1|470717_471368_+|DUF5063-domain-containing-protein
MTTDDTTRDDAVPDDVATDSDSDTTAIEDGSAAADELSSLADLTAQEASAFLTAITEVASGNSPDTAIPLLTLALSQILVAGARLGAIQDVVLLERYEADPGPDDDPDPLRDGLANLLTGIDDYVYVVDPVTSPERVGGSITNDLADIALALTHGLKHYANGRTVEALWWWQFSYLSSWGDRALASMRALHSILSHLRLDADDERVAEAEFDALHP
>NC_014830.1|WP_013491300.1|470036_470636_+|recombination-protein-RecR
MYEGAVQDLIDELGRLPGVGPKGAQRIAFHLLQADSDDVSRLVTALTEVKARVRFCEVCGNVAEAERCRICADSRRDHTAICVVEEPKDIVAIERTREFRGTYHVLGGAISPIDGIGPDDLRVRELMQRLASGEVQEVIIATDPNLEGEATATYLSRLLRDVGLTVTRLASGLPVGGDLEYADEVTLGRAFEGRRRVDA
>NC_014830.1|WP_013491299.1|469298_469973_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFYSLGRGVLVPLSHALYRPTIEGRENVPRSGGVILASNHLSFIDSFAIPLVSPRRVRFLAKEEYWTGEGLKGLLQKGFFTAVGMVPVNRHSPTAAQESLDTGLEVLRAGDAFGIYPEGTRSRDGRLYRGRTGVAWLALNAQVPVVPVGLIGTQNIQPVGASFPKLAKVTVRFGPPIGVERYQGIPAGRARRQLTDDVMAAIAALTGQEQVDAYNEVPVGAADE
>NC_014830.1|WP_041307159.1|468496_469252_+|methyltransferase-domain-containing-protein
MFQVAADAYGRFMGRYSEPLAEQFVDWVGVRPGERALDVGSGPGALAARLVDRIGLTAVSAIDPSLPFVSALRARLPGLDVQSAGAERLPFPDDFFDHALAQLVVHFMQDPATGIAEMARVTRPGGSVSSCVWDFAGGRAPLSTFWQAVTDLDPGARTEEDLPGARAGDLEGLLEAAGLTEIRSGELVVVVAQRSFEEWWEPYTFGVGPAGEHVASLTDNARDALRDHCRGLLQDAPFDVEATAWAASGTV
>NC_014830.1|WP_013491297.1|466096_468436_+|DNA-polymerase-III-subunit-gamma-and-tau
MATALYRRYRPESFAEVIGQEHVTEPLMQALRTGRVGHAYLFSGPRGCGKTTSARILARCLNCEEGPTPTPCGVCQSCVALARGGPGSVDVIEIDAASHGGVDDARDLRERASYGPAQSRFKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSRTHHYPFRLVPPAKLSSYMESLLEQEHVAVAPGVLSFVVRAGGGSVRDSLSVLDQLIAGSGPEGLTYESAVSLLGFTDGELLDATVDALAAADGAATFRQIDRVIESGLDPRRFIEDLLERLRDLIIVAAVPEAGQVLRGVPEDQLERMRVQQAAFGPGALSRAADIANSGLTEMTGATAPRMQLELICARILLPASSGEAGYGARLDRLERRLEVGGVPSQASSPDHQPSRMPLGSPPPVPPVPAPQPPPSSVQDVSPPPPALRASSVQDVPPPPASSVQDVPAPGAGRAPSRGPQSSTGGQQEPPPAPADPAPASAPASAGGMDTDAIRRAWPDVLGRIFSRRRITWTFVSQHAQVIGYDGTTLTLGIATAGLTNTFRSGNHAEIVRQALIDELGVDAVVDGIHASEVAPSEVAGSGHPTPATTATDAPGPITPGSHEGGPSGSPGPQRPSGPGGGGGAAGDLRNAGGSAGAARAGASTLGVSPGAPPTTGRSLETNAGWGSVSAAAPDWATRPAGAAQTDLPTAPPSGSARVATTGATSGASAVRESLGAARRGAHQPEGEPRAPQRPVTDDAAVSDDDEDIEISGDVGRAVIEKVLGGRVISELDD
>NC_014830.1|WP_013491296.1|465081_465738_-|ABC-transporter-ATP-binding-protein
MSRVAVLTGEVRAVAVSKSIATTTLLEPTDLTADPGEGVVLRGPNGSGKTTLLRIIGGLLEPTTGTASVGGRPADERDPAVRAAVAALIGTPTTYRDLTLVDHLVLVDSTWGHDPGTSDQRGLQLLESLGIGDLDDRFPHELSSGQEQLFRLALTLTRPSRVLLLDEPEQRLDTTKRQVVAGLLRARVDEGATLVMACHDPELTAALATRVVDLAPAR
>NC_014830.1|WP_148236455.1|463675_465067_-|hypothetical-protein
MSALEVDDEDWLGQADWIVGGQAARAARKQGIYAGYVLVLFAAVYGFPLVQALFRTSDRIWLREQLASAGGVLVLAGSVAAILGAGLWAGRFRGPVVPPLPWIDLVVTAPVDRALAVRRWWRFAVVATVFVGAVVGLVLGSGLAFAEVTGVAAIAVATLAGAALGVLGARLWLWGQVRSWPGADRGVSVLWRVPDALRALHAESLRAHSANTSTLAGSALTGNLRTARLAFARPVRRGRTARLRAGRPIRVLVRRDVLGLRRQPATVLAGAGLSTIGALVLVWGLTQPAAPAVALGVGMLPLYLGFGAWAEGLRLQADNVGTPSLIGVAAVPEAVAHLVVPAVLTSGVLGGAAGLAALTTGLPPVALGVLAAVVPSVALLCGGHLLAAFRGAPPTVSGPQGVVLWYLRPGLVVVVLGGVTSYALRGGHGVGSVTATLAICLVVAWGLATVRRLTHLHRAFGAT
>NC_014830.1|WP_013491293.1|460737_461967_-|GNAT-family-N-acetyltransferase
MSDLRVRDVTEADLPAALQIRTRSFGPLRGSEQSWWDGLAAEVLPGRMLAVVDESDTMLATGRALPFEQVWGGRHLRMGGVAGVYVEPSARGRGVGTLLGRALVERMVELGDVVSCLFPTAPELYRAVGYEVGGVQPRCSYAAHDVRAVRSRGGGLRPRPAGPEDAALVHSLLRAHQERHALSGPMLPTVEKWREYLADDGLINYVLDEEDGRGFVSYSLADEVLTVEEIAAESAEATAALWAVVGSGSSAAPTVRAHLDPRDPARLLLGAVPELDVREHLWMLRVLDLPGAMAARGFAPHVTASVDVVVDDPLVPAGSGRWTLTVESGAGRADPADPTDGTGGAGASPAAYGLEGEPARLGPRGLSALWCGWTMSRLRVAGLVRGGRPETDRALDAVFAGSPHLTEYF
>NC_014830.1|WP_013491292.1|459510_460722_+|MFS-transporter
MSAIAPSVPVVRTARNAVFTAFAINGAAFAAFASRVPDLKHQLVLTAGELGLTLLALSLGAVIGLPLSGWFVHRFGAGRSTLGAAAVQSLGLVGVGLAVTAMESRALAMAALVLVGVGTGVFDVSMNLEGAAVERLLGRSIMPHFHAAFSAGTVVSALVGAGLSFLHVSVLAHLVGVAVLLLAVTPWFLRAFLPREVEDDPTDETRDPAAGGRGRAGLGAAWREPRTLLIGVVVFAAAFTEGTANDWIGVALSDGYDLPRWAGVLGFAVFLTAMTAGRVLGTRLLDARGRLPVLRVLFVAAVAGSLLVVFGGPVLAFVGAAVWGVGASLGFPVGMSAAADEPRRAAARMSVVSTIGYTAFIAGPPLLGFLGDHVGVLRSLLVVGAMAGLAVAALPAVREADRR
>NC_014830.1|WP_013491291.1|457935_459246_+|MFS-transporter
MSTHSTARPTLSSFWQDLPRDGKLLISTVVFQSIGTGLVLPFMVVYLNEVRGIALETVGLLLALQAGVGIAVVTPVGALIDRVGPRRVYASSLVALILADILLARATTVNQASVALLLLGYGFGVVWPASSALIGNLIPSELRQRYFGVNFTLLNLGIGIGGIIGGRFVDVTRPDTFVAVYLLDALSYIPGLVILLGPLRHARDRVERAADAASVRVSYRALLRDPDLRALLSLVAVAALVSYPQLNAGLPAYARAEGQISTQGLGYAFAVNTLVIVLLQLFVLQRIEGKRRTRVAVVMAGTWAVAWSLLGATSIVPGTIVATVLLAACTGIFGLGETMLQPTTAAMVNDLAPDHLRGRYNALSSLMFSIAFVVGPVIASFLIGHDLGGGYIAFLVGGCALLVIMALAAERRLPAHVNGLRPAPGGSVTAPAPISG
>NC_014830.1|WP_013491302.1|471575_472334_+|helix-turn-helix-domain-containing-protein
MPSASVSRHQPEPLGPLGPLESPDPPAATDLSRVSEVSGLIVRARRRGDLSQRDLATAVGVSQSTIAALETGDREPALALFLRILAEGGLRLAVVDSSGKEVRPVASDTVRDNAGRRLPAHLDADPPDRKPWYRLREERDRVRAGAAQDPRLLPDHPTHAELEARRRQQLYGARPPAPGSDRDAGYLECECETECWLGTACPPQCLCQCETTPRLDPCQGRIRVSHDSDAIGGSPTSAIDCELRTPGSREPQ
>NC_014830.1|WP_013491303.1|472330_473602_+|aspartate-kinase
MSIVVQKYGGSSVADAESIKRVARRIVETKRQGHQVCVVVSAMGDSTDELLDLAEQVSAAPPARELDMLLTAGERISMALVAMAIAQLGEEARSFTGSQAGVITDDAHGAARIIDVTPGRIQSALDAGHIAIVAGFQGVSQTTKDITTLGRGGSDTTAVALAAALDADVCEIYTDVDGVFTADPRILPSARKLDVLSMEEMLDLAANGSKILHLRCVEYARRYGIPIHVRSSWSQRQGTWIKANPYEGEDAVEAPIIAGIAHDRSEGKITIVGVPDRVGIAAKIFGAVADAGINIDMIVQNVSAAETAKTDISFTLPKGDGPKALSVLQAIKGDVEYADLRFDDTIGKIALVGAGMKSHPGVSAKFFGALAEAGINIEMISTSEIRVSAVTRAEQLDDAVRAVHTAFGLDSTEDAIVYGGTGR
>NC_014830.1|WP_013491304.1|473686_473953_+|hypothetical-protein
MTPDEPKLLPDGRVFPPVTPDPPPPPGQEEIIVPDLDFGSAAEAAVGSAAEAAKEPGDEPRDEAPHTAPDTAPDPQDGSEPPAGEPTA
>NC_014830.1|WP_013491305.1|474000_474420_+|hypothetical-protein
MPLSRVAGLVVLAPLVLGTAGCGSPEAATATSAASRFVRLASDDVAAACDLLAPATRSKVTEDGGGDCAAGLRSADLPAGSATGPDVDPEIAGHTAMVTTGGQTLFLALFDDGWKVIAAGCTRTSADLATPYDCAVRGE
>NC_014830.1|WP_013491306.1|474501_475191_+|hypothetical-protein
MTGQRQREFLKDNALSLAFLLLLLLSLAGQALSGVAEYNDQARTAQLQEISVWRYVTSSRFAVDTAENWQSEYLQFAVFIFLTIWLVQRGSSESKKPGEEGRESDKKQLLGRYVRDDSPPWARAGGWRTALYSHSLLVIMTTIFVLSWTAQAIAGRVASNEERMRELLEPQTLGQYVTSPDFWSRTFQNWQSEMLAIASMAILSIYLRERGSPESKPVGMPHDETSADD
>NC_014830.1|WP_013491307.1|475255_478528_-|response-regulator
MTAAPRVPGREIAPDHPGELGARFATIDWSHTPLGPISEWPTELRGAVSICLTSRFPMLVWWGPQYVMIYNDGYRPMLGRLKHPAALGSAGKEVWPEIWATIGPMLDRVMETGVATWSRDQKLILERNGYPEECYFTFSYSPITSEAGEVGGVFTAVTETTDHVLSERRLGTLGVLARRLGEATDAEHVRRLAAEVLLSNPQDHPVVAMVDAAALPDDPRDLDVPEELRADVLAAATQAATLQHQVHHDLPSPVHLHDSGLSVAGLHALPIALPGDEELSEVLVVGRSSQRTWEPALATYLALCVTHLGTALSAIRTLDTERQRAETLEVLDAAKSSFFTNVSHELRTPLTLIAGPVAEALGDPGLTPEQRERLDLVQRNTVRLTRMVDAMLDFGRMAANKLQPLPEPLDVALQTRTMADSFTQAFDRAGLDFVVDCDHAPRTAHLDRDMYERVVLNLLSNALKYTPAGSVRLRLECSADGFAVSVADTGIGIRRRDLARIFERFEQLPRRGRARFQGGAGIGLAMVKQLTELMGGSVDVESTLGRGSTFTIRLPWGTPPVESAEPADGRSITPRNADAFLAEAEGWYEPYAAEPAPRTSRPPAVAGSPAGSVPDGAAARPRLLVAEDNRDMRTYLRGALESDYDVEMVPDGTTALQRAVASRPDIVLADAMMPGLDGFALTRAIRMNAAVRDVPVIILSARAAESDTTEGLTSGADDYVSKPFSVGDLKARLASNLERSRARLRDAAWRRAVMESFQDALLITDAEGEVVEVNDAFTQLLGFSADDGPFSVPHPWWPAVQTPTGVAEVDAVDVPPTDRANVEQLLAQALQGATITGRECRLVTKDHRDVWVRLSTREVESVGGQPNYVVMSLQDVTREHAARARRQAAAALSAEFGRAEDLEQVLEAAVTGFADLFDGDSTVRALAGPEEHVFTAAGPVRRADLDDTLWELLTAIEPEVPAPSDRVPGLLISPQNHPSSECRVWVQFRRPRRVATDERIVGDLLGQAFALAVDRVVAATAFADRESHLSRAIESHRMIGQAIGILIERHRVTPAEAFTRLKQASQARNIKLREIASRVIETGAEPDEAD
>NC_014830.1|WP_013491308.1|478647_479211_-|hypothetical-protein
MSSLHSLLSVLQRQHAHIGMLLSRVGDSSGTARHGAVADLLQYVALHESAEQTFMHPVALKSVGDVAAVQGRVVEEREIEAVITRLEGLDPASMDFMIYFGLLEEAMSGHTRAEENVEARVLGAVPDHELEHMARGIGLVDVWMDPAARLIGGSVASMPLRPGPRDVGFSELHRRSLEAFDAVFRLR
>NC_014830.1|WP_013491309.1|479305_480343_+|DNA-topoisomerase-IB
MRLRRSDPGKPGLRRVRRGKGFVVVDTEGRRVDADTMARVKALVIPPAWEDVWVCPWPNGHIQAVGTDAAGRRQYLYHPAWHETRDRVKHERVVTLARRLPEARAEISRRLRRPGLGRERVGAVALRLLDAGLFRTGGEEYETENGSHGVATLRKDHVSVRGDVVSFCFPAKSGVEREAEVRDPALAKAVASLKRSRGPSERLLQYRTEGGAWCELTSTEINRDFKELVGDDYTVKDLRTWAGTVLAAAAFAERADHGPPASERVRKKVEREVMTLVSEHLGNTPAVARRSYVDSRVPDEYAAGRTIARALARASAADRRRLRRGDLAEVTDRAALERALVRLLS
>NC_014830.1|WP_052337947.1|480650_482312_+|NAD(P)/FAD-dependent-oxidoreductase
MTPDRGPGTRGGPGDPDAVVVGSGPNGLVAANLLADAGWRVVVLEAQDEPGGAVKSAEDVRPGWVHDTFSSFYPLAAASPTIQGLGLERHGLEWVRAPASVGHPLPGGRWAVVHPRPEDTAAALDRLHPGDGEAWLRVCALWDRVGADLVGALLTPFPPLRAGLRLGAKVPRLGGLAFARELLLPVRRLGDEWFGGEGPKLLLAGNAAHADIAMDAPGSGLLGLLLAMLGQSHGFPVPRGGAGRLTAALVARFESLGGEIRTGVRVNQVEVRSGRAVGVRLGDGEHIRATRAVVADVSAPALFGGLVPWSQLPDRLRRRMRSFEWDAGTVKIDWALSGPVPWASAPELTPGTVHLADSVGDLAIAGAQLASGRVPDRGLVILGQMAATDPTRAPRGSESLWAYLHVPQRRSRADQAHPEPVDEPRAELVAHQVEERIEEYAPGFRDRVLDRRVLGPAELERRNENLVGGAVNGGTAAIHQQLFWRPVPGWGRPETPVQGLYLASASAHPGGGVHGACGSNAARAALAHDRLERLTARRIRPVGPGPRLGRRQP
>NC_014830.1|WP_013491311.1|482308_482779_+|SRPBCC-family-protein
MSRTTRLMSCSPDDVFEILADGWSFASWVVGAARIREVDATWPQSGSRIHHSVGLWPALIDDTTSVLHLDRPHALELKVRAWPTGEGKVRLECVPEEGGTRVIMTEDATKGPATLVPRLVRDPVLDARNTEALRRLAYLAERKAAESRPAKRVEKS

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Crispr_ID: NC_014830_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014830_2

1213827-1213933

Orphan

Consensus_repeat	Method
CACTCGACGCCACGACCCACTCGAGTGCGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014830_2

>merge|NC_014830|2|1213827-1213933|CRISPRCasFinder
CACTCGACGCCACGACCCACTCGAGTGCGCAGTTCGTGCCGGACCCAGCGCAGCGGCATTCGGCAGGAAGTGCCCACTCGACGCGACGACCCACTCGAGTGCGCAGT

>NC_014830|2|2|1213827-1213933|CRISPRCasFinder
CACTCGACGCCACGACCCACTCGAGTGCGCAGT	TCGTGCCGGACCCAGCGCAGCGGCATTCGGCAGGAAGTGCC
CACTCGACGCGACGACCCACTCGAGTGCGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014830.1\|WP_013491930.1\|1208135_1209590_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143412
NC_014830.1\|WP_013491940.1\|1217668_1218472_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_014830.1\|WP_013491931.1\|1209619_1209835_-\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|235013
NC_014830.1\|WP_148236748.1\|1210643_1211795_-\|4-hydroxy-2-oxovalerate-aldolase	unknown	unknown	gnl\|CDD\|181282
NC_014830.1\|WP_041308439.1\|1220946_1221729_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_148236480.1\|1219994_1220369_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|181058
NC_014830.1\|WP_013491945.1\|1221859_1223836_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_014830.1\|WP_013491929.1\|1207314_1208139_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|132386
NC_014830.1\|WP_013491927.1\|1203754_1206724_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|180395
NC_014830.1\|WP_013491932.1\|1209837_1210644_-\|4-oxalocrotonate-decarboxylase	unknown	unknown	gnl\|CDD\|132262
NC_014830.1\|WP_013491934.1\|1211807_1212815_-\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|236227
NC_014830.1\|WP_041308436.1\|1213945_1214686_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_014830.1\|WP_013491937.1\|1214819_1215608_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_014830.1\|WP_013491935.1\|1212819_1213647_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|132264
NC_014830.1\|WP_174411520.1\|1219074_1219977_-\|catechol-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|274480
NC_014830.1\|WP_013491928.1\|1206898_1207099_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_014830.1\|WP_013491938.1\|1215698_1216736_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_014830.1\|WP_148236750.1\|1218596_1219001_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NC_014830.1\|WP_013491926.1\|1202817_1203762_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NC_014830.1\|WP_013491939.1\|1216826_1217672_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
NC_014830.1\|WP_013491930.1\|1208135_1209590_-\|aldehyde-dehydrogenase	gnl\|CDD\|143412	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.	0
NC_014830.1\|WP_013491940.1\|1217668_1218472_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.7286e-102
NC_014830.1\|WP_013491931.1\|1209619_1209835_-\|tautomerase-family-protein	gnl\|CDD\|235013	PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional.	1.71111e-13
NC_014830.1\|WP_148236748.1\|1210643_1211795_-\|4-hydroxy-2-oxovalerate-aldolase	gnl\|CDD\|181282	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated.	0
NC_014830.1\|WP_148236480.1\|1219994_1220369_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	9.47054e-18
NC_014830.1\|WP_013491945.1\|1221859_1223836_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.12221e-71
NC_014830.1\|WP_013491929.1\|1207314_1208139_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|132386	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.	9.23451e-48
NC_014830.1\|WP_013491927.1\|1203754_1206724_+\|DUF1116-domain-containing-protein	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	2.15999e-132
NC_014830.1\|WP_013491932.1\|1209837_1210644_-\|4-oxalocrotonate-decarboxylase	gnl\|CDD\|132262	TIGR03218, 4-oxalocrotonate_decarboxylase, 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc. [Energy metabolism, Other].	1.6973e-77
NC_014830.1\|WP_013491934.1\|1211807_1212815_-\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|236227	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.	1.1211e-174
NC_014830.1\|WP_041308436.1\|1213945_1214686_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.39146e-62
NC_014830.1\|WP_013491937.1\|1214819_1215608_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.06369e-60
NC_014830.1\|WP_013491935.1\|1212819_1213647_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|132264	TIGR03220, 2-hydroxypenta-24-dienoate_hydratase, 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.	1.19492e-100
NC_014830.1\|WP_174411520.1\|1219074_1219977_-\|catechol-2,3-dioxygenase	gnl\|CDD\|274480	TIGR03211, catechol_2_3, catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase. [Energy metabolism, Other].	2.70272e-123
NC_014830.1\|WP_013491928.1\|1206898_1207099_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.60246e-33
NC_014830.1\|WP_013491938.1\|1215698_1216736_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	3.86199e-29
NC_014830.1\|WP_148236750.1\|1218596_1219001_-\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	2.06897e-33
NC_014830.1\|WP_013491926.1\|1202817_1203762_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	1.85607e-24
NC_014830.1\|WP_013491939.1\|1216826_1217672_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.90188e-62

>NC_014830.1|WP_013491935.1|1212819_1213647_-|fumarylacetoacetate-hydrolase-family-protein
MDSNFRSSAAKELLAAYSSREPIEPLTSTYDDLTLEDAYAIQLLQIDELTAAGRTIKGHKVGLTSAAMQKMLGVTEPDYGHLLDDFFYLEHMPIPVDRFIQPRIEPEIAFVLKKPLRGPGVTVHEAIAAIDFVLPALELVDSRIRDWRIGLFDTIADNASSGAVVLGSTPTDVTAVDLRLAGGTFHRNGQVVGTGAGGAVLGSPLNSLVWLANTVGARGITLEAGHVVLPGSICAMVPVAAGDTFTATFAGLGSVTARFTSSSDRSSDPSSNPKE
>NC_014830.1|WP_013491934.1|1211807_1212815_-|acetaldehyde-dehydrogenase-(acetylating)
MANHTPRTKGTAAIVGPGNIGTDLMFKLMRRSDVIEPRWMIGVDPSSDGLRRAKSLGLEASHEGVDWLLAQDELPDIVFECTSAKAHEANAPRYAEAGILAVDLTPAAVGPYLCPPVNLEFNLDAMNVNMITCGGQATTPIVAAISSVVPVPYAEIVASISSKSAGPGTRANIDEFTETTAAALEVVGGAQRGKAIIILNPVEPPLMMRNTVFCAIPDEAAEPGALQDAILESIHRMVATVQEYVPGYHLRADVQFDPSRETWKGQARVFVPIEVKGRGDYLPDYAGNLDIITAAAARVGDILVAHRLGVASTWKSSADLGELPDAASPAEKAGV
>NC_014830.1|WP_148236748.1|1210643_1211795_-|4-hydroxy-2-oxovalerate-aldolase
MTIRPEDAPVVTAPVTESEILANTPTAGGERDLRITDSTLRDGSHAMQHQFTEEQVRGVVHALDQAGVQVIEVSHGDGLGGSSFNYGFSKVDEFDLIKAAVDEATQAKIAILMLPGLGTVHHLKRAHAAGASVARIATHCTEADVSLQHFAAARDLGMETVGFLMLSHKASPEVLAQQARIMVDAGAQCVYVVDSAGALVLDTAQERIESVIAEIGAEAQVGFHGHQNLSMGIANSVLAYRAGAKQIDGALCALGAGAGNSPTEVLAATYERLGIRTGIDLGQVLSAAEDVVRPFIPRLPWMDRASITQGYAGVYSSFLLHAERAAERYGVPAHAILQRVGEAGYVGGQEDMIIDIALQLAQEAEERERNGLIMGDLAGLGVR
>NC_014830.1|WP_013491932.1|1209837_1210644_-|4-oxalocrotonate-decarboxylase
MAKGTRPEAGWDIESVAAELLACEDERREREPFTDEWPELDLDTGYAIQDLNLQKRLDRGEKLVGVKLGLTSRAKQQRMGVHFPFVAWLTDAMILPIGDPVPQSTLIHPRIEPEIVFVMGDRLEGPGVTAAQAMAAVESVWGGAEVIDSRYRNFRFKAGDVSADNASSGAFVTGPVGLPPTDLDLALEAVLVEVNGEIVDSATGAAVQGHPGEALALAANDLARRGHAIEPGWIVLTGGMTDAVFAPPGSSVAMHFTNLGSVFINGGE
>NC_014830.1|WP_013491931.1|1209619_1209835_-|tautomerase-family-protein
MPLIEITLVEGRSPEQLRTLISKVTQAAVEAVDAPLESVRVVLREVAPTHFAAGDVTIAERSAQRHTAQSS
>NC_014830.1|WP_013491930.1|1208135_1209590_-|aldehyde-dehydrogenase
MTEYPFFGHIIDNEEVESLDGKRFDTINPWTREKWAEVAEASAADAERAIASARKAFDEGPWPRMGRTERATLIHRLADLMEEHADELARLDSTDMAKPFAQAKHDVARSVWNFRFFADHQRDHVGEVMPMDSGHHTYTEYGPAGVVAAISPWNFPLMMASWKIAPAIAWGNTCIIKPAEDTPASVVMLGRLAIEAGFPPGVLNVLNGFGVPAGSSLTGDPRVDRVTFTGESGTGRIIMTAAAQNLTPVSLELGGKGANIVFEDADIDNAVHWAVEAIFRNAGQVCLAGSRLFVQAGIYEEFLARFKEAAENLVIGEPFAADTQFSCLASEEHYLKVKSYVDTVEEQGGKILTGGLAEDGSWLVRPTIITDLPLTATQYCQEIFGPVVVVNTFETEAEVVHLANDTAYGLNAMLFTENLSRAHRVSSNLKAGTVWVNCFFIRDLRTPFGGVGDSGVGREGGNFSREFFTEPKAVVMQIDRQVRA
>NC_014830.1|WP_013491929.1|1207314_1208139_-|alpha/beta-fold-hydrolase
MTEPSPLGGEILDVAGVPTWVHDVGDGPVVLLLHGSGPGVSAAANWRLTIPALVAAGHRVIAPDQLGFGRTVPPEGHEYSVDSWLAHAVALLDVLGVERASVVGNSFGGAMALRLASQHADRVDRLVLMGSVGVPFPITEGLDAVWGYEPSVDNMRALLDLFAHDTSRMTDDLARDRYEASVKDGADERFAAMFPAPRQRWVDSMVLPMDEIRSISAPTLLFHGREDQVIPFTTSLNLFHLIEQSQLHVFGQCGHWTQIEYADDFNALLARFLA
>NC_014830.1|WP_013491928.1|1206898_1207099_+|cold-shock-protein
MAQGTVKWFNSEKGFGFIAPTEGPDVFVHYSEIQTNGYRSLEENQAVEFDVEQGPKGPQAMRVRLV
>NC_014830.1|WP_013491927.1|1203754_1206724_+|DUF1116-domain-containing-protein
MPDQVEIRTGAYVDSVSLMQVSRTVAAAPGVAAAQVAMATELNLAVIMGMGFDVPAAGPNDLVVAIRGDEEAIAAGLAALDEALAGLRAAGSQAGGFGEAPAPRTLGGVLHRVGANLALVSVPGQHATTEALDAVEAGVSVMIFSDNVPVEDEVRLKSIAERRAVLVMGPDCGTAVVGGVALGFANVVRSGSVGVVAASGTGAQQVMCLLEAAGVGVSHVLGVGGRDLSAAVGGRSTRQALAALAADPATERIVVVSKPPAAEVLSDIESYAAGLGKPVHWATLGAGKPDLTAAVESVLAALGAEVEWPRWEADQPAATGSSLRGLFVGGTLADEAMLVAGQTLGDIRSNIPLRPDLFLGPELTDAGHVVIDFGDDTLTRGRPHPMIDPSLRLERIAAEATDPTCGVLLLDLVLGHAAHPDPAPELADTIRVARATAEASGRTLPVVVSITGTEDDPQGLTRSALLLRDAGASVLLSNAAATRQAVRLLGRAPAEPASGTSPAASGIEGTARHTEPATQLHGLLTADLSLAAAGVPLFAESVRAQAVPVSEAAWQPPLAGTERDLAVVLADARRAEANRLAFERMTAAGADFVDVRPAREALGLEKGTFLHAGPPITFDRASGPLKGALIGAMLFEGLADTPEEAEAALERGDGITLEPCHHRDAVGPMAGVISPSMWLYELRDDVHGNRSWCSLNEGLGKVLRYGAYGTEVIDRLHWMNSVLGPLLQQAVRTRVEASGPIDVKAIIAQMLQMGDEGHNRNRAGSLMLLRELLPTMITADAPSTDIAEAVRFSGANEHFFLNLGMPACKLATLAAHGIPGSSVVTTMARNGTDFGIRVSGTGDDWFIGPANTPAGLFLGSYGPEDANPDIGDSAITETAGIGGFAMAAAPAIVRFVGGDVPFALRATQTMYEITVGEHPAYQVPILEFRGTPTAIDVAAVARTGILPQINTGMAGRVAGVGQVGAGLVNPPEQCFTAALAALAAAARIG
>NC_014830.1|WP_013491926.1|1202817_1203762_+|DUF2877-domain-containing-protein
MLTAAARPSWPAAVSPLVLGAVAGPRRAARVLGVFPTCVYVGLGPHDAVLALLARDALLQPIGLRLPTWSPDVRWDVSPGDEVDVGEGRVRLARADVVAARVQRLPRVAPPPPDQPPHRPLDCALDCTLDDTDCALHCALDWPPEAQRWLAALAQDLAAAALTNQPVAPFLRSLVGAGRGLTPSGDDAIAGVVLALRAAGRLRAVDRVGSHLGPLLDRTTSVSAALLRAAVEGYAVPEVVALLAAPGPSPDPRLLERVLAIGHSSGRDLLAGITGARRALSAHRAVGHRAVGHRAVGHRTGTVHASAQEGVLHA
>NC_014830.1|WP_041308436.1|1213945_1214686_-|IclR-family-transcriptional-regulator
MPSGLKSVGSALDVLECFAVDGELGVSDIARRLGVAKSTAHRLLQTLVSRGFVEQDATSGAYRLGIHLYELGQLALARNELRHAALPTLRQVARATNLTVNFSVPEGADVVFIERIENLDGVRILGHFGRRLPSHCTSSGKVIAAFNPTVYRARLNAGFPPRLRGTVRTAEEWETVVDQVRAKRYAESHGESFDGASSVAVPVVSHGRAVASLSVFGPTDQVKPAVGQLVPLLTAAANRIVKNLGR
>NC_014830.1|WP_013491937.1|1214819_1215608_+|IclR-family-transcriptional-regulator
MRSTDRNGPIPEVPATPVGVLGRTLALLESFKNADASLTLAELSRRTGLPKATVHRMTAEMRREHMLEQLDDGSYRLGLRLFEIGERVHSHRSLSQAALPIMEDLREATRQRIHLAVLEGVDVVYVEILGANLLRQIGSRTGGRFPAHATGVGKAILAYSPVAVVRARIDAGLDRVTPRTITTPGALQRELQEIRTKGFAQDREESHVGVSCVAAAAFGSDSKVRAALSITGRTTSIDPARLGPAIRIAANTLSRALRESHL
>NC_014830.1|WP_013491938.1|1215698_1216736_-|ABC-transporter-substrate-binding-protein
MKTLLTTTTACLVLVTGLAACSGGDVQSAAKPSTETEILLPFPEGLPMAPVTVAKEQGLFKANGIDNVKVSVADGSGYVSQQLVAGNVNFALMGSADVAVAASKRPDVRVLFCHQAHNVYRIGALADSGVTDLAGLTGKSLGITEPGGGENALVKAALASAGLTDSVTQLPIGGAGPQSLSAIKDGKVQGYASSYPDFVALGAQGIEFVDITPEKYSSIPGTCMATTQEFLDSEGGKDEAKAVTKSWIDAEYYTLENRDKAFDLVCGAVPSACENKEAAKALFTEALAVMAPNEGDRPGDTKAEVWKTVVEVLSTAGTVPASLDLTSNVTGGDLDEIRNAAYAGR
>NC_014830.1|WP_013491939.1|1216826_1217672_-|ABC-transporter-permease
MSIDTTTRVGGAPSTPGSGRRAAVSRRMPALSSRAAKIGLPLAVLVAGLAGWELSVQSGLVNPITVPAASDTFAAMAEIMQTSYFWESTWQTLQETLYGFLIGGLAGLVIGALTGTFALFRTALWPFVVAFQNTPRVALAPVFLTWFGFGMTSKVVMAAVICFFPVVINTVAGIASVDDNARTLFRTYGATTPQTFFRLTLPTAAPVAFAGIKTALTLALLGAIVGEFVGASEGLGVLVKEFNFQLEVAKGFAVVIFLALIGLALYGLIELAEKRLITWKH
>NC_014830.1|WP_013491940.1|1217668_1218472_-|ABC-transporter-ATP-binding-protein
MTVVDRLTTIAGEPIVMRGLSKSYVTTAGRNPVLDGIDIDIAPGELISLVGPSGCGKSTILKILAGLIPYDEGEVSLGGQPPREGRRDVGLMLQQAVLMPWRSVAGNIRLPFDLARLNGPEVEERVAQLVELVGLSHAVEHRPWELSGGMQQRVSLARALSLDPGVMLLDEPFSALDEFKREHLGLEFTRMHEALGRTTILVTHSIPEAVLMSDRIIALGANPGRVLADIRVDLPRPRVAAMIGTPAFMETSQKVRQALVGEDGLLA
>NC_014830.1|WP_148236750.1|1218596_1219001_-|heme-binding-protein
MTYAAGRAAVDAALERAAEIGIAVNVAVTDPSGALLAFARMDGAPLLSSGIAQDKAWTVSAFNGIATHEFFGLIEDEPALREGIVHRDRLVVFGGGVPVRVDGVLVGAVGVSGGSAEQDREIAEAGAAAVATPD
>NC_014830.1|WP_174411520.1|1219074_1219977_-|catechol-2,3-dioxygenase
MGYAHIRVTDLAEAKAHYANTLGLYETLDQDGKLYFKGWDEWDHHSLVIEEGGVGLVKFGFKVEKAEDIDEIEKKGQQFGLTVERMSKGENPEVSDGIRFTTPSDHVFEVYHDQTLIGTEVGTHNPEAFPRHLVGVGVPGLDHSLILAEDVRTMENMLTNVFGFYATERVQTDLNDDDAHYIATWMTSNNQIHQIAVLEGPQSKLHHVAFKLQDWAEVGHAGDIMVMDDVPIDIGPTRHGITRGQTIYFFDPSGNRNEVFAGGYLAYPDRPTVKWTPDQIARGIFYHAREMNERFTTVST
>NC_014830.1|WP_148236480.1|1219994_1220369_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MVPNLTIHPTGEVLYLEPGETVLGGLYKAGYAYTIGCRRGGCAICKVDVREGDFSYDHPVADTVISDEERTDGTCLSCRAVPDSDLTIEMRDTCLRLVNPFLRQMNDKARLRADALAAGTTTKE
>NC_014830.1|WP_041308439.1|1220946_1221729_+|hypothetical-protein
MEEDQRLHTIVPVDRPQVRREGVVGHRMVHPRSVTEVAGLRVVDLPDTWVDLGELVGRGRPVGLDDLIVVGDACATRLESLAPLRHALAKRTRPRGKKTLTEALESIRVGSWSPRETTCRLMFLRAGLPEPTLNEPIYASWDPQLLLGYGDLVWRIELPDGRVLKVIGEYQGHDFHAGEAQRGHDEVRRRRFARDGWIVIEIWNDDVTSPEAREVTIRRFAAALEVATETLTFAAAEPRFFSRHAMDLALQRSARRFAWV
>NC_014830.1|WP_013491945.1|1221859_1223836_+|ABC-transporter-ATP-binding-protein
MRDFPPEIRAFTDRATSRDEPDTRSPRTFLWWMVRQQGTLFVAGLVVAVVWMVPQALGPWMVGRAIDTGIVTGDTTATIRWVLILGAVTAVGALSGTVYHTIIVREWLIALYGTTKLVTRKALQLGHVLTRRTPTGEVLSVSGSDGDQFGALMEVSTRAISQLVAYLAVAAIVLSTSVRMGLLVLLSAPLLVMLGTPLLRPMQRWQGIERSRNSELTSMATDIVAGLRILRGIGGEGTFGGNYAEQSQRVRHSGVLAGTWLAAVEAVGVLLSGGFVVALMWLGTREVAQGRLTLGQFVSFLGYGLFLLHPMRTFVEFAQKWIRSVVSARKAIAVLGQRPPWVEPEQPRALPEMAPIVDEASGTVIEPGLLTMVVSAVPDDSAALADRLGRYLPSDEGALVSEEIPEELKGRAARRERSQRARAREAQARRDEERARQAWGVTVGGVDLAAAPLDAVRGRILVSDTSPQVFAGTLRDAIDPLGHLTRSQAELALHTAAGEDVFDALPGGWQGRLDERGRGLSGGQRQRLVLMRALAADPEVLVLVEPTSAVDAHTEARIAERLGPHRAGRTTIVMTASPLLLHHADEVILLDAGKATTRGRHVDLVASSAAYRSVVVRGEVQPPARPDPNEPYDPNHSYDHHDPYDHLSEEPGDEHRRH

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Crispr_ID: NC_014830_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014830_3

1535621-1535695

Orphan

Consensus_repeat	Method
GCACCACTTTCCCGCACGTGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014830_3

>merge|NC_014830|3|1535621-1535695|CRISPRCasFinder
GCACCACTTTCCCGCACGTGCGGGCAAGTGGTGCGGTTTCCCTGCAGGCCGGCACCACTTTCCCGCACGTGCGGG

>NC_014830|3|3|1535621-1535695|CRISPRCasFinder
GCACCACTTTCCCGCACGTGCGGG	CAAGTGGTGCGGTTTCCCTGCAGGCCG
GCACCACTTTCCCGCACGTGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014830.1\|WP_013492205.1\|1534558_1535212_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NC_014830.1\|WP_013492216.1\|1546295_1547084_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_014830.1\|WP_148236507.1\|1531192_1531711_-\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492199.1\|1529885_1530902_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_014830.1\|WP_013492198.1\|1528891_1529866_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
NC_014830.1\|WP_013492207.1\|1535770_1536727_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_014830.1\|WP_013492203.1\|1533423_1533630_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492208.1\|1537033_1538311_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NC_014830.1\|WP_013492213.1\|1541965_1542508_-\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492200.1\|1530905_1531139_+\|biotin-attachment-protein	unknown	unknown	gnl\|CDD\|133458
NC_014830.1\|WP_013492214.1\|1542504_1543287_-\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NC_014830.1\|WP_052338093.1\|1533938_1534550_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NC_014830.1\|WP_013492206.1\|1535310_1535565_+\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|376410
NC_014830.1\|WP_013492212.1\|1540914_1541961_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_014830.1\|WP_013492209.1\|1538345_1538996_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492210.1\|1539012_1539603_-\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_148236506.1\|1527471_1528236_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_014830.1\|WP_013492202.1\|1531853_1533260_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_014830.1\|WP_013492215.1\|1543460_1546157_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|380147
NC_014830.1\|WP_013492211.1\|1539599_1540913_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635

Protein	Function_ID	Function_description	E-value
NC_014830.1\|WP_013492205.1\|1534558_1535212_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.89934e-122
NC_014830.1\|WP_013492216.1\|1546295_1547084_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.95716e-51
NC_014830.1\|WP_013492215.1\|1543460_1546157_-\|valine--tRNA-ligase	gnl\|CDD\|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
NC_014830.1\|WP_013492199.1\|1529885_1530902_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.29255e-157
NC_014830.1\|WP_013492198.1\|1528891_1529866_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	8.27898e-127
NC_014830.1\|WP_013492207.1\|1535770_1536727_+\|DUF559-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	7.44674e-06
NC_014830.1\|WP_052338093.1\|1533938_1534550_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	8.55189e-120
NC_014830.1\|WP_013492214.1\|1542504_1543287_-\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	3.48301e-10
NC_014830.1\|WP_013492212.1\|1540914_1541961_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.08737e-101
NC_014830.1\|WP_013492211.1\|1539599_1540913_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	2.45902e-23
NC_014830.1\|WP_013492208.1\|1537033_1538311_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_014830.1\|WP_013492206.1\|1535310_1535565_+\|acyl-CoA-binding-protein	gnl\|CDD\|376410	pfam00887, ACBP, Acyl CoA binding protein.	2.50917e-32
NC_014830.1\|WP_013492200.1\|1530905_1531139_+\|biotin-attachment-protein	gnl\|CDD\|133458	cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.	7.63951e-11
NC_014830.1\|WP_148236506.1\|1527471_1528236_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.0782e-59
NC_014830.1\|WP_013492202.1\|1531853_1533260_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.57676e-138

>NC_014830.1|WP_013492206.1|1535310_1535565_+|acyl-CoA-binding-protein
MASTEFESAVAAVKQLTEDPGTDIKLKLYALYKQATEGDATGKRPGFTEFVGRAKYDAWAKLSGTSPEAAEAQYVAVAQDLTAP
>NC_014830.1|WP_013492205.1|1534558_1535212_+|ATP-dependent-Clp-protease-proteolytic-subunit
MMINPTGRLAVPAPQSRYILPQFEERTSYGMKRSDPYNKLFEDRIIFLGVQVDDASADDIIAQLLVLESLDPDRDILMYINSPGGSFTAMTAIYDTMQFVRPDIQTFVIGQAASAAAVLLGAGAPGKRFALPNARILIHQPALSGGDYGQASDIEIQANEVLRMRTWLEDTLAHHTGRTSEQVRNDIERDKILSSDDAKEYGLIDEVLASRKASLEV
>NC_014830.1|WP_052338093.1|1533938_1534550_+|ATP-dependent-Clp-protease-proteolytic-subunit
MPGGLDDHIYNRLLKERIIFLGSDVRDDNANAICAQLLLLSAEDPEKDIWLYINSPGGSISAGMAIFDTMNWIPNDVATVAMGMAASMGQFLLSAGTHGKRYATPHARVMMHQPSGGIGGTATDIKIQAEQMLYVKKQMAELIAEHTGQTIEQIEKDSDRDRWFSAQEAKEYGFVDHVFSSSGQAIEGDTVGQADAKTDGSEK
>NC_014830.1|WP_013492203.1|1533423_1533630_+|hypothetical-protein
MTETNRTAGEIPHEPDEMDVERGSADGSAKANRPLEESLEDAGDVRGVETHHDVEQPVRGEGDDPAVS
>NC_014830.1|WP_013492202.1|1531853_1533260_+|trigger-factor
MKSALETLSPTRVKLTVEVPFEELKPSLDAAIKHIGEHVQVPGFRKGKVPARIIEQRVGRAAVLEEAVNNALPDLYGRALEENDVRPLGQPEITDLKVPATDGEDFSFTAEVDRRPEIELPDFSDIELTVDEAVVSDDDVAERLDALRARFGTLKGVDRPVQDGDFVSIDLSAEIDGEEIDAVNGVSYEVGSKNMLEGMDEALVGMAADETKSFVAPLAGGDQEGREANCTVTVLAVKERELPELDDEFAQLASEFDTLEELKADLTQKAEVDAKFAQGVSARDQLLDAILGRVEVPIPEGIVEAEVNSHLEGEGRLEDDEHRAEVDESTRKGLKTQLLLDAIAEREEVQVQQAELIEFLVMNAQQYGMDPNAFAQTLDKEGQIPAMVAEVARRKALASVLEKVSVKDTAGNVVDLNEAVPGTEADEDEPVDAEADGAGDIEAAEAQPTDAPVAEADEADEADEAAKA
>NC_014830.1|WP_148236507.1|1531192_1531711_-|hypothetical-protein
MSAPRPSPDHALAALRPLQLVSAAIGIGAVMLTAMRILVDLDPVPPSWLAVGLVLAAVVLATAAITLFGYAVPSLPRGLPRENAARTSLRYFGSTTVLRSAIAETPVLVAFAVSFVVTPHSWLPLLIALPVTGALFWWHAWPSPRTAAAVAKGLEAEGAESHLSETLGFVGN
>NC_014830.1|WP_013492200.1|1530905_1531139_+|biotin-attachment-protein
MADVVFPGLSTDDPAAEGVVATWFVDDGATVVEGQLIAEVAVDKVDAEVVAPAGGTVRIIVGEGEGARQGSVIGTVG
>NC_014830.1|WP_013492199.1|1529885_1530902_+|alpha-ketoacid-dehydrogenase-subunit-beta
MTTVETTRRLTGAKAMVEAIAQEMERDPSVIVLGEDVGAYGGIFGSTTGLLDTFGPERVLDTPISETAFIGLGIGAATEGMRPVVELMFVDFFGVCMDQIYNHMAKIHFESGGNVKVPMVLMTAVGGGYSDGAQHSQCLWGTFAHLPGMKVVVPSNPADAKGLMTAAIRDDNPVIYLFHKGLQGLVWMAKQSRSVGDVPAEAYEVEIGKAAVVREGADVTVVTLSLSVQHALEVAEELAAEGVDVEVLDLRSLVPLDRDAIVASVGKTGRLVVVDEDYQSFGLSGEIVATVAERGVALKSAPVRVAVPDVPIPYARELEYAVLPRQDRIRAAIRKVVG
>NC_014830.1|WP_013492198.1|1528891_1529866_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MEDKTRADLYTTMVQIRAFEEAILADYHADKKPAWDIGAGLIPGEMHLSAGQEPVAAGVCAHLDNRDAVTATHRPHHFAIAHGMDLNKLAAEIYGRETGLGRGRGGHMHLFDPMTHFSCSGIIAEGYPPALGQALAFKRQGTGAIAVAVTGEGAANQGAFHESLNLAALWNLPVVFVVEDNDWAISVPRAASTSVMSNADRAAAYGIPGVRVEDNAVEGVYDAADEAVQRARSGGGPTLIEVHTLRLWGHFEGDAQAYRPELAEVPARDPIPTYEQQLIADAVLDETKVEELRAEARQRVEAALEFAKSSPTPDPSTATQYVFA
>NC_014830.1|WP_148236506.1|1527471_1528236_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MNELADQPTDQPAEHSSRGPAEPARRRAHEVPDLPQGVAPARVRSFVRRGRRSALTLDRLHRLAPARALPPGRFDPEQAFGRVAPVVLEIGCGHGHAAIAFASARPEWDIVAMDVHSPGLARMLADAEAAQVPNLRVEQGDAVVFLEERVGDRVFDAIHLFFPDPWRKKKHTKRRFVSPTNLDLLARVLKPAGHILVATDQEFYARHVLDEVAAHPRFDGRRVDRPDWRPAVGFEAKGRAAGREIHELRLDLVG
>NC_014830.1|WP_013492207.1|1535770_1536727_+|DUF559-domain-containing-protein
MPPSHEPFRVLMVTNPVSGKPELDPPAGVTRADLRSPRYRRLFHGTYVDAREPVTPALLVRAALLRDPEAIASHHSAARLWGGTVPDDGLTHIAGLGHRRQVRGIKAHARRAGRRFTTHEGVRLTTPTWTFLDLSDQLSLVELVVLGDSLVKAGRVTCQQLVEAAGTFGGRSRRLARQAAGLVRAEVDSPMESRLRMLLVLAGLPEPAVNHKVHWPDGRVRFRFDLSYPDAKLIIEYDGRQHAESDEQWGIDLGRREWLDGEKWRLVVIRAKDIYNTPAHTLSRVLAAMRDQDVRTPRLRDEWRRHFPSKPDDVTDPV
>NC_014830.1|WP_013492208.1|1537033_1538311_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MARIGEGADLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSELGLDHLPKPREIFEFLEHYVVGQDAAKKSLAVAVYNHYKRIQAGEGPKREDDHVDIAKSNILLIGPTGSGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRSGRKGLGFGQPLHTAKDLGDSFADVMPEDLLKFGLIPEFIGRLPVLTTLGPLDQHALVNILTAPRNALVKQYQKMFAIDGVELEFTDDALEAVADQALLRGTGARGLRAIMEEVLLPVMFDVPSDDGIARVVVSREVVLDNVNPTIVRREAEPRPKRQRKESA
>NC_014830.1|WP_013492209.1|1538345_1538996_+|hypothetical-protein
MIAPFHLRAGDRVPVQQSSTTCGSASLTVARMLVNPAFARWIRLGLEFEAKDEDAPDGRSVEERFAAHEQVVARRTNALVGAGGRIQLPWPRALGTPPWGAVGELEYGAAVPWADYDMTLFRFGGQGSLEKAYAELQRRVRTGRPALLYIGNAWLPRHVVLVMPASRGQELDVYEPSVGRVVDLPRRSFVDRRLRMAGWDVPWGAVWDDATDETLD
>NC_014830.1|WP_013492210.1|1539012_1539603_-|hypothetical-protein
MTTARPRGGVEDGADPTTWRTVRFGKGRPWSLPQLGLALTGVASAVAFLLCLQAASGGFDPVWWALAIVPLATLGFAGSAAPLAFWGLMLAGWFLLTPSGSLSAWSVPAAIALVVGHAAAALSATTPPAGGLPARVVRIWGGRVVLAALTAPAVAALAGALRSGELEASPAAYVIGLGGLAVGVFLLRTEPPAQPD
>NC_014830.1|WP_013492211.1|1539599_1540913_-|DUF58-domain-containing-protein
MRPLLPRTTSSGPLGEWTATAAHTRSVLLAAGAAVAAVLGRRPDLLVLAAPLAVAAVWGHLARPRRAPEADVTLGRGTLREGDVANVVVRVRPASDADGVITLASTRWVERKPASGIAPFEGGVGAIALRSTRWGRRQIGTLSVTLSSAWGAYRVGPTDVPDLATATLPVPAAFDAAAPTPHPRGLVGLNRSSRTGSGSEFNTIRQFQPGDRLRRIHWPVSLRTGTLHVTSTYADEDAHVFVLVDAFSDLGPREGIDGRPTSLDVTVRAAGAISEHFLGSNDRLTLRTVGAANIPRLGMGSGTKHLRRVLESLASVAPASERRDDGQAAIRGVDPNALCLVLSPLIVPTTVGLAHTLAARGMTTVVVDTLPEHLTADPGSVYEALAWRIRLLSREAQVHSLVTRGVPVVPWRGPGSLDHVLRDLSRRAAAPRMGRRR
>NC_014830.1|WP_013492212.1|1540914_1541961_-|MoxR-family-ATPase
MTDLSTPTAGHMDLRRVSDLSNAVLTEVERAVVGKREPLRLVLAAVLAGGHVLLEDFPGLGKTLAARSFAQTLGLTFKRAQFTPDLLPGDITGSFVFDQRSGDFGFRPGPIFTGLLLADEINRTPPKTQAALLEAMQERQVTVEGRTFPLPRPFHVLATANPVEYEGTYPLPEAQLDRFLMRVSFGYPTVDEEWQILTNRMARQQEEQTLAAVISPDELLAMQAAVERVVVDESVGRYCVALAAATRSHGDVLMGASPRGALGLLLCSRAYAIIDGRDYVTPEDVKAVAKPVLAHRVTVKPELWMSEVSGSNVVSRLLRSVPTPAPREKRPPGATGPGTTVSAAAPEA
>NC_014830.1|WP_013492213.1|1541965_1542508_-|hypothetical-protein
MTESRPSGIRPVLSALRPWRRRLLGITAAWGLVALFTALIGLRPDVPRLAVALVASAAVVWYAVDHFASQQLVVWPLTDSELGSGNPGSDYQVTNLAARLEGAAARPEGRPELVHHLHTRLSEIIRERLHAKHGIVVEEEPRWAEGVMPPDLWEFLVTLPPPDLYRPDRLDQILRRIEQW
>NC_014830.1|WP_013492214.1|1542504_1543287_-|DUF4129-domain-containing-protein
MSRRGATGVAVGVLGAWVGAALVMVALVIAASTGPADLLSRPRASLAPAVPTTGLTLTLTALPQESVTPEGAKGWDPDGLLAVLVQVVVVLVVIGILLLFALALRDLLRRVAPTLTSQAEPGFRTPAVPPTILAGADSGLDALGQGSPRNAVVAAWVALEQSAAGAGLPRHVAETSTEYVGRVLAVWDVDARSLDDLAALFREARFSTHPLTEPHRERAIAALTTIRSDLGRAATDVGRAPTDARATPAGVDSARPEGAL
>NC_014830.1|WP_013492215.1|1543460_1546157_-|valine--tRNA-ligase
MTDTPAPTTSRIPERPTLDGLEEKWTQVWKDEQTYAFDRERALSLPREQVFAIDTPPPTASGSLHVGHVFSYTHTDCMARYKRMQGLEVFYPIGWDDNGLPTERRVQNFYGVRGDATLPYEEGFEPPFSEGVDANGKAIKPADQKPVSRKNFIELCDVLTVKDEETFESLFRRLGFSLDWNISYRTIDERSRAVAQQAFLRNYARGEAYQSEAPGLWDVTYQTAVAQAELEARDYPGAYHRVAFHRAGSDGHAEPVHIETTRPELIPSVVALIAHPDDERYQPLFGTTVRSPLFDVEVPVLAHHAAEMDKGAGIAMCCTFGDLTDVIWWRELQLPIRSLITRNGRLQAETPEWIAGGPGESLYAAELATKTTFSAREAVVRALRESGDLDGEPQKTQRKANFYEKGDKPLEIVTSRQWYIRNGGREADLRGALVARGDDIDFHPSFMRARYRNWVEGLNGDWLISRQRFFGVPFPVWYPVTDEGETDYDHPLLAPESALPVDPQIDAPEGYEEAQRGEPGGFVADPDIMDTWATSSLSPQIAAGWPVRGGEGPGSDPELFEAIFPMDMRPQGHDIIRTWLFATVVRAHHEHGTVPWRNAAISGWILDPDRKKMSKSKGNAETPEDVVKAHGADAVRYWAASGRLGTDAAYDTGQMKVGRRLAIKVLNASKFALGFGEVSPALSGGATAEGLGAAVTNPLDRSMLTALADVVEKATHGFESWDYTRSLEVTESFFWTFCDDYLELVKDRAYGGQGEAEAASARAALRIALETLLRLFAPFIPYATEEVWSWFEQGSVHRQPWPTRDELPSGGDPAVLASVSEALAGVRKVKSEAKLGMRAEVRTMTLVGPAAQLDHVRAAEGDLRATGRIGDLSYGEGDGIEVREAELIPAEPRPSHAV
>NC_014830.1|WP_013492216.1|1546295_1547084_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MEPVYTPVIGFARAVFALQGLRFTMLGEDNVPRSGGAVMAINHIGYMDFTYAGLAAQKSGRLVRFMAKESVFSHPVSGPLMRGMHHIPVDRTAGAASYRQAVEALRAGEIVGVFPEATISRSFELKEFKSGAARMAAEAGVPILPVVVWGSQRVWTKGHPKRLGRTNIPIVVSVGEPIPVPADADPEQVTATYKAVMQEMLDVVRATYEPLTGADLKFLPASMGGTAPTLAEATRLDDADTAARRRLAEERRAAQRRAQGKD

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Crispr_ID: NC_014830_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014830_4

1938140-1938199

Orphan

Consensus_repeat	Method
CCCTGACCGGCCCCCCTGACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014830_4

>merge|NC_014830|4|1938140-1938199|CRISPRCasFinder
CCCTGACCGGCCCCCCTGACCGGCCCCCTGACCGGCCCCCTGACCGGCCCCCTGACCGGC

>NC_014830|4|4|1938140-1938199|CRISPRCasFinder
CCCTGACCGGCCCCCCTGACCGG	CCCCCTGACCGGCC
CCCTGACCGGCCCCCTGACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014830.1\|WP_114611027.1\|1948135_1948366_-\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492534.1\|1934533_1935304_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NC_014830.1\|WP_013492535.1\|1935318_1936644_+\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NC_014830.1\|WP_013492539.1\|1938346_1939309_-\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|225203
NC_014830.1\|WP_013492532.1\|1931808_1933230_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NC_014830.1\|WP_114611026.1\|1931068_1931812_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NC_014830.1\|WP_013492547.1\|1947063_1948116_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_014830.1\|WP_148236799.1\|1930105_1930930_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224104
NC_014830.1\|WP_041307463.1\|1946230_1947031_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119401
NC_014830.1\|WP_169312953.1\|1929260_1929974_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NC_014830.1\|WP_013492545.1\|1945707_1946199_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|368218
NC_014830.1\|WP_013492542.1\|1941732_1943331_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_014830.1\|WP_013492536.1\|1936645_1937158_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NC_014830.1\|WP_148236802.1\|1943744_1945649_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NC_014830.1\|WP_013492533.1\|1933229_1934528_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NC_014830.1\|WP_013492537.1\|1937154_1937481_+\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NC_014830.1\|WP_013492541.1\|1940459_1941578_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|225224
NC_014830.1\|WP_013492540.1\|1939414_1940455_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NC_014830.1\|WP_041308563.1\|1943410_1943596_+\|hypothetical-protein	unknown	unknown	unknown
NC_014830.1\|WP_013492528.1\|1928518_1929259_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NC_014830.1\|WP_013492534.1\|1934533_1935304_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.83312e-141
NC_014830.1\|WP_013492535.1\|1935318_1936644_+\|SufS-family-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_014830.1\|WP_013492539.1\|1938346_1939309_-\|neutral-zinc-metallopeptidase	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	2.62424e-90
NC_014830.1\|WP_013492532.1\|1931808_1933230_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_014830.1\|WP_114611026.1\|1931068_1931812_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	5.13177e-42
NC_014830.1\|WP_013492547.1\|1947063_1948116_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	3.22238e-171
NC_014830.1\|WP_148236799.1\|1930105_1930930_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	9.45585e-40
NC_014830.1\|WP_041307463.1\|1946230_1947031_-\|hypothetical-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	5.77765e-38
NC_014830.1\|WP_169312953.1\|1929260_1929974_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	9.02174e-71
NC_014830.1\|WP_013492545.1\|1945707_1946199_+\|DinB-family-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	4.95634e-42
NC_014830.1\|WP_013492542.1\|1941732_1943331_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.91271e-170
NC_014830.1\|WP_013492536.1\|1936645_1937158_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.73047e-53
NC_014830.1\|WP_148236802.1\|1943744_1945649_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.848e-163
NC_014830.1\|WP_013492533.1\|1933229_1934528_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	1.40077e-77
NC_014830.1\|WP_013492537.1\|1937154_1937481_+\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	2.5477e-31
NC_014830.1\|WP_013492541.1\|1940459_1941578_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.78745e-52
NC_014830.1\|WP_013492540.1\|1939414_1940455_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.5635e-06
NC_014830.1\|WP_013492528.1\|1928518_1929259_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.925e-69

>NC_014830.1|WP_013492537.1|1937154_1937481_+|metal-sulfur-cluster-assembly-factor
MTAQTTPANVADVEEAMRDVVDPELGINVVDLGLVYGITVDSQSHAVIDMTLTSAACPLTDVIEDQTAQALEGLVASHRINWVWMPPWGPDKITEDGREQLRALGFNL
>NC_014830.1|WP_013492536.1|1936645_1937158_+|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MDLYQELILEHSKRPHHAGLREPYSAEVHHLNPTCGDEVTLRVSVTGNGDEAVVEDLSYDAKGCSISVASSSVLADEVIGRPVSEALRTVEAMRTMLTSKGKLAGDEEVIGDGVAFAGVAKYPARVKCALLGWTAFTDALARSGQDITRPVSTTTTQHSSPQPTNTGAIS
>NC_014830.1|WP_013492535.1|1935318_1936644_+|SufS-family-cysteine-desulfurase
MSSAAQLHPGALTDEEVAAIRSDFPILSRTVRDGRPLVYLDSGATSHKPTVVLDAERSFYEQHNAAVHRGAHQLAEEATDDYESARETIARFIGAPSAEVVFTKNATEALNLVAYAFSNAAPTDDPKDARFVLGRGDEILVTEMEHHANLVPWQELARRTGATLRWIPLGPDGALDLSGLGSLLTERTKVLAVAHVSNVLGTINPVSDLAERAHALGALVVVDACQSVPHLPVDVTTLGADFIAFSGHKLYGPMGIGVLWGRAELLDVMPPFLTGGSMIELVTMERSTWAPAPQKFEAGVPNAAQAVGLAAAVRWVEQIGLQRIQAHEAALVDELLAGLEERPWVRVVGPPRGVPRGGAVAFVVDGVHAHDVGQVLDDAGVAVRVGHHCAWPLHRALDAAATTRASFAVHSTRHEVAALLEALDRVPVIFGLDVQTPAGVR
>NC_014830.1|WP_013492534.1|1934533_1935304_+|Fe-S-cluster-assembly-ATPase-SufC
MSTLEIKGLTVSVETEDGPKEILRGVDLTVKSGETHAIMGPNGSGKSTLAYSVAGHPKYTVTGGTVTLDGEDVLSMSVDERARAGLFLAMQYPVEVPGVTVSNFLRTAKTAIDGEAPKLRTWVKDMKSAMANLRMDPVFAERNVNEGFSGGEKKRHEILQLELLRPKVAILDETDSGLDVDALKVVSEGVNRAKLDNDLGVLLITHYTRILRYIKPDFVHVFIDGRIVEEGGPELADRLEEEGYDRYATATAVEGV
>NC_014830.1|WP_013492533.1|1933229_1934528_+|Fe-S-cluster-assembly-protein-SufD
MSVADTLAESADAIAQGTGTTHVDPAAARGFVPEQSRAERTASFDLADFAVPKGREEEWRFTPVKKLAALLAEGSSPALDWTLDLPEGVTTSTITAEAARGLGILPPQDRAAAVAAAGAQEVLLVDIAPEAELTQPVRLLLDGTGTDGAVAHAHLVIRAGHHSRATVVIDHQGRGQLTELVSVLTEDASDLTVVAGQRWADDAIHLAQHDALVGRDSRYRHISVTLGGEVVRLNANVRYAGPGGDATLLGVYFADSGQHLEHRSFVDHNTAHCKSLVTYKGALQGGTARTVWVGDALIRAAAEGTDTYELNRNLILTEGARADSVPNLEIETGEIKGAGHASATGRFDDLQLFYLQARGIPEEEAKRLVVRGFFADVVREIPLPDLRDEVSAAIEAELAATAYAAPTTAPSGPTPDAAPSTTDHSLDRTKEN
>NC_014830.1|WP_013492532.1|1931808_1933230_+|Fe-S-cluster-assembly-protein-SufB
MTTHIEELNPGLKDIGRYEYGWADSDAAGSSARRGLNEEVVRDISARKSEPEWMTKLRLKGLSLFGKKPMPAWGSDLTGIDFQNIKYFVKSTEKQATTWDELPEDIKNTYDRLGIPEAEKQRLVSGVAAQYESEVVYHQIREDLEEQGVIFLDTDSALKQHEDLFREHFATVIPAGDNKFASLNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIADEGSYVHYVEGCTAPIYKSDSLHSAVVEIIVKKNARVRYTTIQNWSNNVYNLVTKRAVCEEGATMEWVDGNIGSKVTMKYPAVFLMGEHAKGETLSIAFAGEGQHQDTGSKMVHAAPNTKSSIISKSVARGGGRASYRGLVQVLEGAHHSASTVRCDALLVDTISRSDTYPYVDIREDDVSMGHEATVSKVSEDQLFYLMSRGMAEDEAMAMIVRGFIEPIARELPMEYALELNRLIELQMEGAVG
>NC_014830.1|WP_114611026.1|1931068_1931812_+|ArsR-family-transcriptional-regulator
MVSAEGPITAAELGRHLDLTPAAVRRHLDALVEQGAVIEHEPSGVRRGRGRPARAYVISEGGHRALEADYDSLAVEVLRYLSEHAGPQAVADFARSRVAALEERYAAQLGAAGSDPSARAETLVDLLTRDGFAASARPVHAGPLAGVQLCQGHCPVQHAAEQFPAFCEAETDAFSRLLGVHVQRLATLAGGDHVCTTFVPAAAVGRKTHDGPAVDERVPGAAATDSGEPAQRHTTISNEPTKEGSRS
>NC_014830.1|WP_148236799.1|1930105_1930930_+|CDP-alcohol-phosphatidyltransferase-family-protein
MLPSLFTLGNMVCGFSAVLMAFQGRFGVAAVLIAASIVLDISDGAVARAVGAITPFGLQFDSLADLVSFGIAPAVLVYTWALPSYPQWAWTGAMFWRACAAYRLARFNVTIDPMADKRYFIGLPSPGAAGVVIATVFAIDQPLQGPLLPIAAGVLPAALMATSYRFRSFRGLLSTKNPLQTFGLLALVLVGLVLAPRTTGIVIAYGYVLTSPLGGATAPLRRRWFGPDAVAPPRVRMPSVIMPVQPDPVIDGEAAVEADPDEPCGPSSADPSSK
>NC_014830.1|WP_169312953.1|1929260_1929974_+|phosphatidylserine-decarboxylase
MDESRLGSGHATNPPPPGAAPVKIDPAAKPFTALAAVPTVIAAVARRPRVTVALGLLTAGVTLFFRDPDRAPDRAPVGDQDVVLAPADGMVVHAGPAQEGVAPEGDWQQVSIFLSLLDVHINRSPYGGRVVSVSHVPGRFLAAYRAASATQNERSEIVVERVVDGRPRRVVYRQLVGQLARRIVTRVQAGDEVGTGERMGLMKFGSRMDVFLPPEVVLEVTKGQRAVAGETVLGRFR
>NC_014830.1|WP_013492528.1|1928518_1929259_-|ABC-transporter-ATP-binding-protein
MTEAGHEGSAADFAVTLTELHRSYGSVHALDGLSWQAATGRITAVLGPNGAGKTTAVECAVGLGRPDRGVVRVLGADPAEADADHRAKVGVMLQTGGLPGGSKPMRLLDHLSRFYAAPADVGATARRLGVVDFAGTTIRRLSGGQKQRLALAAALLGRPEVLFLDEPAAGLDPHGRLEVWDIIRALRDEGTTVVVTTHSFEEAERLADHLVIMNAGRTVAEGSLDSVTGGRSLEDVYFGLTTRGRA
>NC_014830.1|WP_013492539.1|1938346_1939309_-|neutral-zinc-metallopeptidase
MSFNENAQLDTSQVQSGGGGGFGRGGGGNFPGGIQVGGGIGGLILLVLMLIFGGGSILGGDSGSGGSGGGLPSQQLRPEQVGAAGQVQESEFAHCKTGADANKDDVCLIIATVNSANDYWTKTLPKYQMNYEVARTVIYEGQAQSGCGTASSQVGPFYCPLDSKVYVDASFFQELESKFGADGGQLAKEYVIAHEYGHHVQNLLGILNRAQQDPQGPNSGAVRVELMADCLAGTWVKHATETTDASGTPLLKPITQEDIRSALSAAAAVGDDRIQEKMQGRVTPENWTHGSADARMSWFNQGLETGDINQCNTFGVESVS
>NC_014830.1|WP_013492540.1|1939414_1940455_-|alanine-racemase
MALTLHVDGARWRAAQDAAIAANPGLVPVVKGNGYGFGREVLYAEANRLRVTMIAVGTYAEVPGALAGFSGDVLVMEPFRAAIHAAIHAATQAGLPSVDDGRLVHTITTRVDLDGLLAANPAARTVVEGLTSMGRFGAPAARVGDLVAAGRGEGVTLHLPLGSGHVDEISRFVEAVGGIRPFFVSHTTADEVAALRRRFPEHRFAARVGTDLWLADRAAYEMRSHVLDVRPLAKGDRVGYRQRPQAAGHLVVVSGGTSHGVAMESPASAATARSRAIAVAEGMLEAVHRVRSPFTVGGTMPRFAEPPHMQCSLLALPDGVAPPSVGDTVPVRMRLTTAYPDAVVIE
>NC_014830.1|WP_013492541.1|1940459_1941578_-|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MSAPITVRDITADEHLAWLRTQPSASFLQTPAWGDVKTDWRHESLGWFEGDTMVGAALVLHRSLPKLGRTLAYLPEGPCIDWASPRLVELLRALRDHLRATGAFALRIGPPVPTQRWRAPTIKAAIGDVTKARYDQVVPDVLEPVGTAVVETLRRLGFRHLSPDDGFSAGQPEYVFQVPLEGRSEADLLAGMNQLWRRNIKKTEKNGVTVRVGDASDLGTFHRVYLETAERDRFTPRGVEYFERMYRVMSTEDPARIRVYLAEHDSDVLAATVFIRVGEHAWYSYGASTAAKRELQGSTAIQWRMMRDALEAGATVYDLRGITNTLAEDNPHIGLIRFKVGTGGEAVRLAGEWDLPLNRVLYTAFDLYMRRR
>NC_014830.1|WP_013492542.1|1941732_1943331_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIVATGIELRAGARLLLEDASFRIDAGDRIGLVGRNGAGKTTLTKVLAGEGQPAAGTVTRTGAVGYLPQDPRTGDLEILARDRILSARGLDEIVRRRAAAEQRMGSEDEAVREKAMRQYARVETEFEAAGGYAAESEAAAIASALGLEDRVLAQPLGTLSGGQRRRVELSRILFSGNETLLLDEPTNHLDADSVVWLREYLRGYKGGLIVISHDVEMLEAVVNKVYHLDANRSALDVYNMGWKTYLQQRETDERRRKRELANAQKKASALLAQADKMRAKATKATAAQNMAKRAERLLAGVEGERVHDKVAKLRFPKPASCGKTPLRASGLSRSYGSLEVFTDVDLAIDRGSKVVVLGLNGAGKTTLLRMLAGVDAPDTGEVEPGHGLKLGYYAQEHENLDVDRSVLQNMKSAAPQLGETDVRKVLGSFLFSGDDVDKPAGVLSGGEKTRLSLAMLVVSAANVLLLDEPTNNLDPASRAEILGALATYEGAVVLVTHDEGAVDALEPERILLLPDGVEDLWGPDYKDLIALA
>NC_014830.1|WP_041308563.1|1943410_1943596_+|hypothetical-protein
MPTDHLACPYCGGDDLSPFPDPMSAWSCLTCLRVLRVELVQPASVTGWGILRALDPAPAAA
>NC_014830.1|WP_148236802.1|1943744_1945649_+|ATP-binding-cassette-domain-containing-protein
MMMRSMSRDRSVAERTLAPGTRRRVLSYAAPYRSSILAFLGVVVVNSVLVVTVPLLLKSLVDDGVIPKDSRVVVRLALVVAAIAVLDALLSVVQRWFSARIGEGLIKDLRTEVFGHVLRQPIAFFTRAQTGSLVSRLNSDVIGAQQAFTSVLSNVVSNIVSVILVVGAMLALSWQLTVGALLLVPLFLLPAKIMGRRLAALASRQMTLNADIGTRMTERFNVAGALLVKLFGDPRREEAEYDERATNVRDVGIQIALNRTLFMAALTLVAALATAMIYGFGGLMAVSGSLSVGTLLALAALLARLYGPLTSLSNVRVDIMTALISFERVFEVLDLKPLVDERPGAVPLPSGPLGVELDGVSFRYPSADEVSLASLESTASGDRRAGGQVLHDINLTVQPGQLIALVGPSGAGKTTLTSLVSRLYDPTSGAVRIGGLDLRDITLSSLRSRVGVVTQEAHLFHDTIRANLLYARPEATEQEMALVLRSAQISDLVDDLPEGLDTVVGDRGHRLSGGEKQRLAIARLLLKAPDIVVLDEATAHLDSESEVAVQRALDAALAGRTSIVIAHRLSTIRQADLIVVLDHGRVIETGRHLELLAAGGLYADLHATQFADESPRTADERRDAVVLPSGPALA
>NC_014830.1|WP_013492545.1|1945707_1946199_+|DinB-family-protein
MAPTTFHAPLRAQLEAFLDDHRSQLNGCLDGLSEEEARRSLVPSRTTLLGLVKHAAFVEKVWFDEAVTGRSRSEIGIASTPDESFVLQPADTIDSVRRAHAEACQASREAVAHLGLDDVVTGNRRGPLPLRWVLLHVLRELAQHGGHADILREQILAGRPEPA
>NC_014830.1|WP_041307463.1|1946230_1947031_-|hypothetical-protein
MLRLWLTPRWLLMSVVAILFGIACWTLGSWQWSRHVEQRTKVTAIEENYDAPPVPLAAALPAVGRTDLAPADQWTKVVLRGTYVPQSDQMVRNRTRERTVGFEVLTPFVTEDATLLVDRGWVPNSRDAETTPGADPAPTGPVQIVGWLRTAEPDLSRDLPAPQLASISIDDARERVPSLSALDLYLVLGTQAPQPPPGPNPVSPLPRPDEGLGPHQAYAIQWWLTMPGGLAFVFFAIRRQVTQAADSPGTAAPKPKKVRIWDEEDA
>NC_014830.1|WP_013492547.1|1947063_1948116_+|GTP-3',8-cyclase-MoaA
MTRLPDPTVRPANAIGRPAAAAGLRDQFGRVARDLRVSVTDRCNLRCTYCMPAEGLPWMPQAEMLSDEEMLRLIGLFVRDGVTQVRLTGGEPLLRRSLVDLVAGIASLEPRPRIAMTTNGVGLDRIAHRLAAAGLDRVNVSLDTIDSETFTRLTRRDRLPDVELGLKAAADAGLTPVKVNAVAMRGVNDQSVADVLQWCLERGYELRFIEQMPLDAQHAWDRGDMVTADEVRATLSKRFSLTPLPAVERGSAPAERFLVDGGPQTVGIIASVTAPFCGACDRTRLTADGQVRNCLFSRTETDLRTPMREGASDDELLDLMRGEMWRKRRGHGIGDPGFVQPDRPMSAIGG
>NC_014830.1|WP_114611027.1|1948135_1948366_-|hypothetical-protein
MGGSWADVEDRACSAKGCRAGAVHAVVWRNPKIHVEGRRKVWLACDAHAQSLADFVGVRGFLLEVVPVGALTEADG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014830_3	3.1\|1535645\|27\|NC_014830\|CRISPRCasFinder	1535645-1535671	27	NZ_CP020568	Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence	77956-77982	5	0.815

1. spacer 3.1|1535645|27|NC_014830|CRISPRCasFinder matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

caagtggtgcggtttccctgcaggccg	CRISPR spacer
taagcggtgcggtttcccagcaggggg	Protospacer
.***.************* *****  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

338194 : 374885

Bacillus_virus(33.33%)

integrase,transposase

attL 337612:337632|attR 379145:379165

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
337612:337632	attL	NA	NA	NA	NA
WP_013491189.1\|338194_339394_+\|integrase	site-specific integrase	A0A059VKS6	Mycobacterium_phage	3.6e-39	31.1
WP_013491190.1\|339455_340529_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	9.6e-07	32.1
WP_041307131.1\|340525_341461_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041308176.1\|341631_341868_+	hypothetical protein	NA	NA	NA	NA
WP_013491191.1\|342186_343491_+	ATP-binding protein	NA	NA	NA	NA
WP_148236449.1\|343610_344192_+	hypothetical protein	NA	NA	NA	NA
WP_041307134.1\|344347_344728_+	hypothetical protein	NA	NA	NA	NA
WP_013491195.1\|346692_346878_-	YegP family protein	NA	NA	NA	NA
WP_148236450.1\|346971_347889_-	hypothetical protein	NA	NA	NA	NA
WP_013491197.1\|348316_348871_+	hypothetical protein	NA	NA	NA	NA
WP_013491198.1\|349134_350451_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_013491200.1\|352204_353956_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_148236704.1\|354355_355909_+	PQQ-binding-like beta-propeller repeat protein	A0A0M4JT37	Mollivirus	2.7e-95	40.2
WP_169312899.1\|356186_356345_+	hypothetical protein	NA	NA	NA	NA
WP_013491203.1\|356357_356603_-	hypothetical protein	NA	NA	NA	NA
WP_013491204.1\|356599_357121_-	C-type lectin domain protein	NA	NA	NA	NA
WP_013491205.1\|357681_358581_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_013491206.1\|358921_359554_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013491207.1\|359550_359928_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_013491208.1\|360849_361059_-	hypothetical protein	NA	NA	NA	NA
WP_013491209.1\|361064_362834_-	Fis family transcriptional regulator	NA	NA	NA	NA
WP_013491210.1\|363032_364058_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_013491211.1\|364084_365692_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_013491212.1\|365780_366656_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_013491213.1\|366657_367500_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_013491214.1\|367496_368576_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-21	31.6
WP_013491215.1\|368580_369663_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.3e-18	30.4
WP_041308191.1\|370078_370543_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0T6A8	Bacillus_phage	5.7e-17	37.4
WP_052337944.1\|370917_371568_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_013491217.1\|371621_373232_-	hypothetical protein	NA	NA	NA	NA
WP_148236706.1\|373490_374885_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
379145:379165	attR	NA	NA	NA	NA

DBSCAN-SWA_2

851479 : 865174

Mycobacterium_phage(100.0%)

integrase,transposase

attL 842827:842843|attR 870209:870225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
842827:842843	attL	NA	NA	NA	NA
WP_083807852.1\|851479_852145_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_148236732.1\|852220_853981_-	hypothetical protein	NA	NA	NA	NA
WP_013491643.1\|853992_854316_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013491644.1\|854320_855421_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041307248.1\|855510_855834_-	hypothetical protein	NA	NA	NA	NA
WP_148236467.1\|856180_857476_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_114609403.1\|858514_860317_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_052337967.1\|860602_860923_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	7.9e-26	60.8
WP_169312902.1\|861038_861197_+	hypothetical protein	NA	NA	NA	NA
WP_013491425.1\|862396_863659_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_148236734.1\|863923_865174_+\|transposase	IS110 family transposase	NA	NA	NA	NA
870209:870225	attR	NA	NA	NA	NA

DBSCAN-SWA_3

937919 : 990035

Acidithiobacillus_phage(16.67%)

integrase,protease,transposase

attL 933158:933178|attR 1000755:1000775

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
933158:933178	attL	NA	NA	NA	NA
WP_013491709.1\|937919_939683_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	8.0e-27	26.4
WP_013491710.1\|939679_940516_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.9e-21	30.3
WP_013491711.1\|940895_941486_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013491712.1\|941485_941887_+	hypothetical protein	NA	NA	NA	NA
WP_013491713.1\|943315_943927_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013491714.1\|943923_944916_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_041307261.1\|945141_945549_-	hypothetical protein	NA	NA	NA	NA
WP_013491716.1\|945619_945865_-	hypothetical protein	NA	NA	NA	NA
WP_013491717.1\|945875_946112_-	BrnT family toxin	NA	NA	NA	NA
WP_052337969.1\|946215_947154_-	prolyl aminopeptidase	NA	NA	NA	NA
WP_013491719.1\|947371_948025_+	hypothetical protein	NA	NA	NA	NA
WP_083807853.1\|948338_948545_-	hypothetical protein	NA	NA	NA	NA
WP_013491720.1\|948666_949656_-\|integrase	tyrosine-type recombinase/integrase	A0A059T688	Listeria_phage	1.8e-07	25.2
WP_013491721.1\|949652_950579_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_083807854.1\|950575_952237_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1SGM4	Mycobacterium_phage	6.6e-07	26.8
WP_013491425.1\|953004_954267_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_013491723.1\|954544_956038_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.1e-48	35.9
WP_174411510.1\|956409_957240_-	hypothetical protein	NA	NA	NA	NA
WP_013491724.1\|957547_958879_-	UDP-glucuronosyl/UDP-glucosyltransferase	NA	NA	NA	NA
WP_013491725.1\|958963_959635_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148236740.1\|959833_962899_+	zinc carboxypeptidase	NA	NA	NA	NA
WP_013491727.1\|963043_967231_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_013491728.1\|967312_967726_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013491729.1\|967835_968201_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_013491730.1\|968350_969163_-	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_013491731.1\|969162_970014_-	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_013491732.1\|970188_970668_-	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_169312945.1\|970676_972218_-	potassium/proton antiporter	NA	NA	NA	NA
WP_148236741.1\|972399_974955_+	penicillin acylase family protein	NA	NA	NA	NA
WP_013491735.1\|974983_975649_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_013491736.1\|975706_978364_+	UTP--glucose-1-phosphate uridylyltransferase	A0A1V0SLA1	Klosneuvirus	3.5e-50	36.9
WP_013491737.1\|978528_979041_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_114609459.1\|979033_979588_+	MogA/MoaB family molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_013491739.1\|979633_980269_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041307263.1\|980339_981470_+	hypothetical protein	NA	NA	NA	NA
WP_114610978.1\|981480_982488_-	AI-2E family transporter	NA	NA	NA	NA
WP_013491742.1\|982682_983513_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_041308396.1\|983626_985003_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_013491744.1\|985073_986120_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_013491745.1\|986116_986284_+	hypothetical protein	NA	NA	NA	NA
WP_013491746.1\|986358_987090_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_013491747.1\|987464_989069_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA
WP_013491748.1\|989198_990035_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
1000755:1000775	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3870249 : 3918097

Gordonia_phage(14.29%)

holin,integrase,transposase

attL 3869343:3869361|attR 3880734:3880752

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3869343:3869361	attL	NA	NA	NA	NA
WP_013494287.1\|3870249_3871545_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052338053.1\|3871614_3872079_-	cupin domain-containing protein	NA	NA	NA	NA
WP_013494289.1\|3872216_3872495_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013494290.1\|3872491_3872758_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_148236667.1\|3872928_3873615_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VH72	Gordonia_phage	1.3e-30	39.6
WP_148236513.1\|3875039_3876301_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.3e-99	60.6
WP_013491643.1\|3876793_3877117_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013491644.1\|3877121_3878222_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041307934.1\|3878311_3878635_-	hypothetical protein	NA	NA	NA	NA
WP_013494293.1\|3878839_3879244_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_148236669.1\|3879345_3880056_-	DUF429 domain-containing protein	NA	NA	NA	NA
WP_013494295.1\|3880422_3880647_-	hypothetical protein	NA	NA	NA	NA
WP_013494296.1\|3880822_3881446_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
3880734:3880752	attR	NA	NA	NA	NA
WP_169312936.1\|3881605_3881779_-	hypothetical protein	NA	NA	NA	NA
WP_013494298.1\|3882068_3883088_+	hypothetical protein	NA	NA	NA	NA
WP_013494299.1\|3883252_3883789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013491425.1\|3883908_3885171_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_013494300.1\|3885302_3885545_-	hypothetical protein	NA	NA	NA	NA
WP_041307937.1\|3885541_3885790_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_041309029.1\|3886806_3887430_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_013494303.1\|3887441_3888527_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013494304.1\|3888523_3889057_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA
WP_013494305.1\|3889067_3890144_-	stilbene synthase	NA	NA	NA	NA
WP_169312964.1\|3890231_3891017_+	UbiA family prenyltransferase	NA	NA	NA	NA
WP_052338142.1\|3892239_3893364_+	ATP-dependent DNA ligase	NA	NA	NA	NA
WP_041309034.1\|3893562_3894339_-	inositol monophosphatase	NA	NA	NA	NA
WP_013494310.1\|3894561_3895194_-	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_013494311.1\|3895294_3896473_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_083808001.1\|3896564_3896900_+	antitoxin	NA	NA	NA	NA
WP_148236671.1\|3897109_3898039_+	protein kinase	H2ECD5	Megavirus	8.2e-15	26.4
WP_013494314.1\|3898043_3899309_-	PucR family transcriptional regulator	NA	NA	NA	NA
WP_013494315.1\|3899672_3901058_-	GTPase	NA	NA	NA	NA
WP_013494316.1\|3901247_3902462_+	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	6.5e-20	26.0
WP_013494317.1\|3902511_3902859_-	hypothetical protein	NA	NA	NA	NA
WP_013494318.1\|3903088_3904168_+	NYN domain-containing protein	NA	NA	NA	NA
WP_013494319.1\|3904202_3907052_-	cation-translocating P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	5.6e-70	27.0
WP_013494320.1\|3907048_3907735_-	hypothetical protein	NA	NA	NA	NA
WP_013494321.1\|3907801_3908119_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_013494322.1\|3908306_3908981_-	hypothetical protein	NA	NA	NA	NA
WP_013494323.1\|3909134_3909398_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_013494324.1\|3909424_3909796_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_013494325.1\|3909916_3910135_+	DUF2510 domain-containing protein	NA	NA	NA	NA
WP_013494326.1\|3910234_3910645_+	hypothetical protein	NA	NA	NA	NA
WP_013494327.1\|3910965_3911586_+	hypothetical protein	NA	NA	NA	NA
WP_013494328.1\|3911596_3912337_-	trypsin-like peptidase domain-containing protein	B4UTS4	Rhizobium_phage	5.4e-09	33.3
WP_041307941.1\|3912338_3912917_-	hypothetical protein	NA	NA	NA	NA
WP_041307942.1\|3913014_3914016_+	ERCC4 domain-containing protein	NA	NA	NA	NA
WP_041309042.1\|3914035_3914560_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_013494333.1\|3914974_3916483_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.0e-38	30.7
WP_013494334.1\|3916730_3917657_+	hypothetical protein	NA	NA	NA	NA
WP_013494335.1\|3917653_3918097_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014830

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection