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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014831 Thermaerobacter marianensis DSM 12885, complete sequence 4 crisprs cas8u1,cas3,csb2gr5,csb1gr7,DinG,cas5,cas7b,cas8b1,WYL,csa3 1 7 3 3

Results visualization

1. NC_014831
NC_014831 040000080000012000001600000200000024000002800000 CRISPR 1 2 3 4 Self-targeting Prophage 1 2 3 anti-CRISPR 1 2 3
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014831_1 724015-724196 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014831_2 1143966-1145239 Unclear NA
17 spacers
cas8u1,cas3,csb2gr5,csb1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014831_3 2079749-2079844 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014831_4 2479885-2481108 Orphan NA
18 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_014831_4 4.1|2479915|37|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2479915-2479951 37 NC_014831.1 51553-51589 1 0.973

1. spacer 4.1|2479915|37|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to position: 51553-51589, mismatch: 1, identity: 0.973

cgacgccctggtcgacgattcgggcatcgactggaca	CRISPR spacer
cgacgccctggtggacgattcgggcatcgactggaca	Protospacer
************ ************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014831_2 2.2|1144077|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144077-1144110 34 NZ_CP022369 Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence 526839-526872 7 0.794
NC_014831_2 2.2|1144077|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144077-1144110 34 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 266089-266122 7 0.794
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 NZ_LR134465 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence 6763-6798 7 0.806
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1840831-1840866 7 0.806
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1494571-1494606 7 0.806
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 NZ_CP012944 Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence 1333538-1333573 8 0.778
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 NZ_CP029359 Azospirillum sp. CFH 70021 plasmid unnamed4 54333-54368 8 0.778
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 DQ500118 Rhizobium phage 16-3, complete genome 47726-47761 8 0.778
NC_014831_2 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144585-1144618 34 NZ_CP010312 Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence 200911-200944 8 0.765
NC_014831_2 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144585-1144618 34 NZ_CP015420 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed2, complete sequence 76040-76073 8 0.765
NC_014831_4 4.14|2480781|35|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480781-2480815 35 CP011998 Ralstonia solanacearum strain YC45 plasmid, complete sequence 309111-309145 8 0.771
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP026091 Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence 657438-657473 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP026093 Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence 657473-657508 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP012940 Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence 543499-543534 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP012944 Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence 314039-314074 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NC_017575 Ralstonia solanacearum Po82 megaplasmid, complete sequence 657288-657323 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP026308 Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence 657266-657301 9 0.75
NC_014831_2 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144871-1144906 36 NZ_CP051295 Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence 536721-536756 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 428824-428859 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 420818-420853 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 11315-11350 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP009146 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence 423829-423864 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 418328-418363 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 1085372-1085407 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 774215-774250 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 675673-675708 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 305183-305218 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 1207121-1207156 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 569750-569785 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP026527 Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence 439028-439063 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_003078 Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence 1300455-1300490 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP019586 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence 1274894-1274929 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021799 Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence 1368003-1368038 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021828 Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence 875993-876028 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 991179-991214 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 510772-510807 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 590359-590394 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP019484 Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence 1431746-1431781 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NZ_CP019487 Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence 1204746-1204781 9 0.75
NC_014831_4 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 2480517-2480552 36 NC_020560 Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence 1300462-1300497 9 0.75
NC_014831_2 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144585-1144618 34 NZ_CP047896 Sphingomonas sp. C33 plasmid pC33, complete sequence 8193-8226 10 0.706
NC_014831_2 2.11|1144727|35|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144727-1144761 35 NZ_KC687076 Photobacterium gaetbulicola Gung47 plasmid unnamed, complete sequence 29253-29287 10 0.714
NC_014831_2 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT 1144441-1144476 36 MH509447 Microbacterium phage Eden, complete genome 35397-35432 11 0.694

1. spacer 2.2|1144077|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 7, identity: 0.794

gagatgcagcacgagtgggccccccaga--gccggc	CRISPR spacer
gccgtgcagcccgagcgggccccccagaccgccg--	Protospacer
*  .****** ****.************  ****  

2. spacer 2.2|1144077|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.794

gagatgcagcacgagtgggccccccaga--gccggc	CRISPR spacer
gccgtgcagcccgagcgggccccccagaccgccg--	Protospacer
*  .****** ****.************  ****  

3. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 7, identity: 0.806

cctcgccccgggcgatggcgtcctcgatgatgcgct-	CRISPR spacer
ccgcgccccgggcgatgccgtcctcga-gccgctccg	Protospacer
** ************** ********* * .** *. 

4. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.806

---cctcgccccgggcgatggcgtcctcgatgatgcgct	CRISPR spacer
agggcttgcc---ggcgatgccggcctcgatgatgcgct	Protospacer
    **.***   ******* ** ***************

5. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.806

---cctcgccccgggcgatggcgtcctcgatgatgcgct	CRISPR spacer
agggcttgcc---ggcgatgccggcctcgatgatgcgct	Protospacer
    **.***   ******* ** ***************

6. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

cctcgccccgggcgatggcgtcctcgatgatgcgct	CRISPR spacer
gttcgccccgggcgatgtcgtcctccatcgtgtcct	Protospacer
 .*************** ******* ** .**. **

7. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 8, identity: 0.778

cctcgccccgggcgatggcgtcctcgatgatgcgct-	CRISPR spacer
cctcggcccgggcgatggcctcctcggc-ctgcggca	Protospacer
***** ************* ******..  **** . 

8. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to DQ500118 (Rhizobium phage 16-3, complete genome) position: , mismatch: 8, identity: 0.778

cctcgccccgggcgatggcgtcctcgatgatgcgct	CRISPR spacer
tcatgtcctcggcgatggcctcctcgatgattcgct	Protospacer
.* .*.**. ********* *********** ****

9. spacer 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 8, identity: 0.765

----tcgggcccagttggcctcgggcgaggtgccgctg	CRISPR spacer
gacatcggct----ttggccgagggcgaggtgccgctg	Protospacer
    **** .    ******  ****************

10. spacer 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015420 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

tcgggccc---agttggcctcgggcgaggtgccgctg	CRISPR spacer
---tgcccagaagctggccgcgggcgaggtgccgccc	Protospacer
    ****   **.***** ***************. 

11. spacer 4.14|2480781|35|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 8, identity: 0.771

gtcaccgtcacggtggacgtgggccaggccaccga	CRISPR spacer
gtgggcgatacggtggacgtgggcgtggccaccgg	Protospacer
** . ** .***************  ********.

12. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

13. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

14. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

15. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

16. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

17. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

18. spacer 2.13|1144871|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.75

-gacggacctcgactggcagaccggcgagctgcaggt	CRISPR spacer
tgac-aacctcgactggcagagccgcgagctggccac	Protospacer
 *** .*************** * ********   ..

19. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

20. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

21. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

22. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

23. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

24. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

25. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

26. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

27. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

28. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

29. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

30. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

31. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

32. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

33. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

34. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

35. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

36. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

37. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

38. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

39. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

40. spacer 4.10|2480517|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcccattgcgtagatccggcggccgaacaggtac	CRISPR spacer
ccgcccatcgcgtatatccggcggccgatcgtcgaa	Protospacer
 *******.***** ************* *.   * 

41. spacer 2.9|1144585|34|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047896 (Sphingomonas sp. C33 plasmid pC33, complete sequence) position: , mismatch: 10, identity: 0.706

tcgggcccagttggcctcgggcgaggtgccgctg	CRISPR spacer
ggccgcccagatcgcctcgggcgaggtgtccgcg	Protospacer
    ****** * ***************.*  .*

42. spacer 2.11|1144727|35|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KC687076 (Photobacterium gaetbulicola Gung47 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

cggctcgtcgcgctctgcgttgtcgacgagcaggg	CRISPR spacer
ttcctcgtcgcgctctgcgtggtcgccggggcctg	Protospacer
.  ***************** **** **.*    *

43. spacer 2.7|1144441|36|NC_014831|PILER-CR,CRISPRCasFinder,CRT matches to MH509447 (Microbacterium phage Eden, complete genome) position: , mismatch: 11, identity: 0.694

cctcgccccgggcgatggcgtcctcgatgatgcgct	CRISPR spacer
ggacggccagggcgatggcgtcctcgatggtctcgg	Protospacer
   ** ** ********************.* .   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12696 : 54390 48 Bacillus_phage(16.67%) tRNA,protease,head,holin,portal,integrase,tail,capsid attL 14801:14846|attR 59294:59339
DBSCAN-SWA_2 1939459 : 1948496 8 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_3 2204715 : 2280512 57 Escherichia_phage(28.57%) protease,transposase NA
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_014831.1|WP_013494448.1|19355_19580_+|hypothetical-protein 19355_19580_+ 74 aa aa NA NA NA 12696-54390 yes
NC_014831.1|WP_013494443.1|16321_16984_-|DUF3800-domain-containing-protein 16321_16984_- 220 aa aa NA NA NA 12696-54390 yes
NC_014831.1|WP_013494463.1|27990_28221_+|hypothetical-protein 27990_28221_+ 76 aa aa NA NA NA 12696-54390 yes