CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014917	Thermovibrio ammonificans HB-1 plasmid pTHEAM01, complete sequence	0 crisprs	csa3	0	0	0	0
NC_014926	Thermovibrio ammonificans HB-1, complete genome	9 crisprs	csx1,Cas9_archaeal,cas3,csx3,csa3,cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,c2c10_CAS-V-U3,cas6,csm5gr7,csm4gr5,csm3gr7,RT,cas3HD,cas2,cas1,cas8b2,cas7,cas5,cas4	2	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_014926_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_1

301011-301108

TypeIII

Consensus_repeat	Method
AGGTTTGTTGCTTCATGTGTGTAAGAAAA	CRISPRCasFinder

1 spacers

cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7

The CRISPR arrays of NC_014926_1

>merge|NC_014926|1|301011-301108|CRISPRCasFinder
AGGTTTGTTGCTTCATGTGTGTAAGAAAATTAAAATTGCCTAATAGTTGCTGTTGCTTTTCTTTATCGGAGGTTTGTTGCTTTATGTGTGTAAGAAAA

>NC_014926|1|1|301011-301108|CRISPRCasFinder
AGGTTTGTTGCTTCATGTGTGTAAGAAAA	TTAAAATTGCCTAATAGTTGCTGTTGCTTTTCTTTATCGG
AGGTTTGTTGCTTTATGTGTGTAAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537084.1\|288118_288790_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_014926.1\|WP_041439369.1\|306547_306904_-\|hypothetical-protein	cmr5gr11	mkCas0117_cmr5gr11_CAS-III-C	unknown
NC_014926.1\|WP_013537090.1\|297270_298344_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NC_014926.1\|WP_157629603.1\|299091_299940_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NC_014926.1\|WP_013537085.1\|289300_289885_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537087.1\|294303_295899_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_014926.1\|WP_013537094.1\|302421_302673_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537100.1\|306896_308084_-\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_014926.1\|WP_013537095.1\|302672_303203_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_014926.1\|WP_013537098.1\|305684_306545_-\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	unknown
NC_014926.1\|WP_013537088.1\|295987_296848_+\|paraslipin	unknown	unknown	gnl\|CDD\|259811
NC_014926.1\|WP_013537086.1\|289932_294273_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NC_014926.1\|WP_013537091.1\|298318_299119_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NC_014926.1\|WP_013537102.1\|311168_312332_-\|CRISPR-associated-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|377130
NC_014926.1\|WP_013537096.1\|303212_304655_+\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NC_014926.1\|WP_013537103.1\|312324_313587_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	mkCas0175_cmr1gr7_CAS-III-C	gnl\|CDD\|377130
NC_014926.1\|WP_013537089.1\|296834_297278_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NC_014926.1\|WP_013537101.1\|308085_311181_-\|CRISPR-associated-protein-Csx11	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|187832
NC_014926.1\|WP_013537097.1\|304663_305695_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238525
NC_014926.1\|WP_013537083.1\|287733_288108_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|223372

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537084.1\|288118_288790_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.46756e-84
NC_014926.1\|WP_013537090.1\|297270_298344_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	3.20584e-146
NC_014926.1\|WP_157629603.1\|299091_299940_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	6.00593e-43
NC_014926.1\|WP_013537101.1\|308085_311181_-\|CRISPR-associated-protein-Csx11	gnl\|CDD\|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	2.52778e-81
NC_014926.1\|WP_013537087.1\|294303_295899_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_014926.1\|WP_013537100.1\|306896_308084_-\|hypothetical-protein	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.101e-20
NC_014926.1\|WP_013537095.1\|302672_303203_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	2.75316e-122
NC_014926.1\|WP_013537088.1\|295987_296848_+\|paraslipin	gnl\|CDD\|259811	cd08829, SPFH_paraslipin, Paraslipin or slipin-2 (SLP-2, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in all three kingdoms of life. The conserved domain common to these families has also been referred to as the Band 7 domain. Individual proteins of the SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. This subgroup of the SLPs remains largely uncharacterized. It includes human SLP-2 which is upregulated and involved in the progression and development in several types of cancer, including esophageal squamous cell carcinoma, endometrial adenocarcinoma, breast cancer, and glioma.	2.81694e-58
NC_014926.1\|WP_013537086.1\|289932_294273_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NC_014926.1\|WP_013537091.1\|298318_299119_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	2.07454e-78
NC_014926.1\|WP_013537102.1\|311168_312332_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	2.43286e-05
NC_014926.1\|WP_013537096.1\|303212_304655_+\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_014926.1\|WP_013537103.1\|312324_313587_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.35386e-08
NC_014926.1\|WP_013537089.1\|296834_297278_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.09842e-13
NC_014926.1\|WP_013537097.1\|304663_305695_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238525	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.	3.16421e-101
NC_014926.1\|WP_013537083.1\|287733_288108_+\|cytidine-deaminase	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	3.96116e-43

>NC_014926.1|WP_157629603.1|299091_299940_+|PHP-domain-containing-protein
MVRVRGEKVDLHSHSTASDGTFTPSELVELAHLKGITLFSLTDHDTVDGLPQARLRGRELGVNVIPGIEVTADTSFLGPGKRELHILGYYFDPDSEPIRHLTAFFKESRIKRNKELLARLEERGFPVTYAQMVKRFGENFGKPNIARVLIDAGFFTNREQAIDFLSSLGVKREKMDYRTVLELITEAGGLPVIAHPVTTGLSHSQLYCFLKEAKEAGLKGVEVYHYRHTPKDVAALNCMAKELGLFTTAGSDFHGANKPCIELGFLNVTTAQINFPNYCQIT
>NC_014926.1|WP_013537091.1|298318_299119_+|50S-ribosomal-protein-L11-methyltransferase
MDYRVYELEVPASEYDLATSELFEAGALGVEVVSEGETVTFKAYFKEGSLPERLKPYLKSVSPLEERDWNSEWKKHYAPVNVGSGIWVVPSWMKGEFKEPEGSLVIYIRPGRGFGTGTHETTKLAMRFIKKLLKEGDSFLDVGCGSGILSILAAKLGASEVVGCDIQPNLQEEIEENQRLNGIEFTFVEGSVNAVNGKFDLVVANIEKHHLEPLLPLLAEKFKGTLILSGILTSQRDQFVKTLEKLGLRVVEEAKEGEWCAFVARK
>NC_014926.1|WP_013537090.1|297270_298344_+|alanine-racemase
MLRWAEVHLDRLLYNYRQVEKLSGPKKLIAVVKANAYGHGSVAVARFLQEQTAVSAFAVATYAEGVQLREAGIQRPIIVMSSTLEEELGRAREFRLMPVVYDFWELERAKELEVPFHVKLDTGMGRLGFLPSQWQELLCSLRGAKLAGVMTHFPSADEDPEFTAGQAKLFGEFVKALKGAFPKLWVHCDNSAALPLGLNGLFTHSRVGLALYGSKPFGGYPASLKQVMEVKARIISVKELPPGHSVSYGRTYTTSGKERVGVVSFGYADGLPRSLSGRGSFIVNGRRCPIRGRVCMDMTVISLEGVVAGKGGVATVTGLELPFEELARLAGTIPYELMCRISPRVERVYRGLQSLRT
>NC_014926.1|WP_013537089.1|296834_297278_+|NfeD-family-protein
MVTADILPFLLVTVGFLLLVVEFFLWSFVVFPIGFAFIALGFALLFHLSRWAALALFFGVASAGYTLSFIYLKRLKGKENLLEELRTQQGVVISRVDEFTYLVRFPLGAGGEEVWNAYCERELKYGDRVRVVGLKGNKLLVEKEEDA
>NC_014926.1|WP_013537088.1|295987_296848_+|paraslipin
MESLFPLIVFSGFGALILAVASVKIVPQKQAWIVERLGKYHRTLYAGLHFIVPFLDVVRAKVSLKEQVLDIPKQEVITKDNVVVRIDAVCYYTVVKPEDAVYNIENLEYAIVQTIQTNLRDIIGGMELDEILSSREKINARIKEVLQGAASSWGILINRVEVKEIEPPSNIVQAMSMLIEADRKKRAMITEAEGKKRAQVLEAEGYKLAKWQEAEAIERIGKAQANALRSVVEATSSPELAAKLLIGGDLVKGIERLAASQNAKFVVLPPSVESLFKLLGEKGGNG
>NC_014926.1|WP_013537087.1|294303_295899_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MRPARALISVSDKTNIVEFAKELSRLGIEIISTGGTAKLLKGAGIPVREISELTGFPEIMEGRVKTLHPKVHGGILARRDKDEHLRAMKELEIEPIDLLVINLYPFKETVAKGADLEEIIENIDIGGPTMVRAAAKNYKFVAIVTDPADYDRVLKELKETGEISLKTRFYLARKAFNLTAHYDALIADYLYSIDEEGKPLACRELRSPLTVTFEKVQDLRYGENPHQRGAFYREVFVKEPCVTRARKLHGEKELSFNNIYDLDGALNLVLEFEPETEGVACAIIKHANPCGVALGKTPQEAYEKALKVDPISAFGGIIAFNAKVTKEAAELITERFYECIIAPEYDEEALEVLKRKKNLRVLTTDGLTGIEKRGADSPFDYRRVVGGLLVQDRDLVTVDPEKLKVVTDREPTEKEWKDLLFAFKVVKWVKSNSVVYAKDGVAVAIGVGQTSRVDSARCAAEKAQMVGIDLNGSVLASEAFFPFRDSVDEAAKVGVTAIIQPGGSIRDKEVIEAANEHGMAMVFTGIRHFRH
>NC_014926.1|WP_013537086.1|289932_294273_+|glutamate-synthase-large-subunit
MGNFHKDSCGVGFIANFKGERSYRVIDRALAAVSNLTHRGATLADGRTGDGSGILFQVPHDFFSKEARRLSPDFKATEVAVGTFFLSGSVDEALELIESEVKAVLGDAVLRDVPIDPSQCGEIARRSLPKIVQVIAPASTPVEEYVLRRRLEKGLKSIDRRNYVVSLSSRLVVYKGMLLAPDLKRFFLDLRCEELTSSFAIFHQRYSTNTNPEWRLAQPLRFIAHNGEINTITANRNLIKALEPILSTPALGERIKEVLPLVEFDESDSASLDRVYELMVVAGIDPATAITVLIPPAYELLTHLTGEERAFFEYASLLMKPWDGPAAIAFTDGTVVGGKLDRNGLRPARFVVTEGGDVIFGSEVGMVEVPESEVVRFGRLMPGEIFTVNVETGEFKDNDEILSEIASELRVEREVRRKLYRLKGKKKVEPRVREGLGRELVKFCYSTEDLEEVVEYMAEMGKEPVFSMGDDTPIPNLLDRPYLLFRHFKQRFAQVTNPPIDPIREKAVMSLKLRLGAKVNFLELSGKLRRRIEVDSPLLTPSEFEEIKGTEFLNVKEFKLEFREDETLREGLKRLFESVKRAILEENVEIIILSDRDVELPIPSLLATSGLCAFLEREKLLHRVSLVVETGEVRDTHQTAALVAFGASAVHPYLVFEYLKSKEVELNKPYSELEANYKEAVNAGLLKIMSKMGISVISSYHRSHLFDILGIGREVVEEFFPHTASPVDGIGLEEIEQTVRERVKLSKELHEPSPSGELKFRPGGIHHSWSPKVVAGIFKAAKSGSYEEFRKVVEEVLKRPTYLRDLLEIKSDREPIPIDQVEPVESIVKRLMVPGMSIGALSKVAHEVIAEAMNILGSKSCSGEGGEDPARYGTIKNSKIKQVASGRFGVTPAYLASAEEIEIKIAQGAKPGEGGHLPGHKVTPYIASLRYSVPGVALISPPPHHDIYSIEDLAQLIYDLKLANPEARIAVKLVSEVGVGTVACGVAKAKADIVQVSGASGGTGASPLSSIKGAGLPWEVGLAETQKELIQNELRESVGLRVDGGFKIGRDVVIAALLGAEEFGFGTAAMIAEGCVMDRDCHTNRCPVGIATQDEKRIKKFRGAVETVVNYFKLVAEDIRRILAQMGYRSLDEIIGRTDLLAENTELKERYPLARKLNLSFITGVPAYRLKRKELPYNPVVSKLNEQIVKDVLPHLKKGERVFKEYPIKNTDRSVGVSLAYHIVKLFGNEGLPTNLVHLRFKGVAGQSFGAFLPSGVLLEVVGEANDYVAKGLGGGIVVLHFPEEFRGNPTENVIAGNTILYGATGGALFASGVVGERFAVRNSGAVAVVEGAGQHACEYMVRGIVVILGSVGKNLGAGMTGGTAFVLDPEIEEKINRDYVEVRRLNRQDIDVLTSLLMKHYKFTKSPTAARVLENRALLESIRKVVPIGVKELELKVSGEDKLPD
>NC_014926.1|WP_013537085.1|289300_289885_+|hypothetical-protein
MEILVVGPVRGNVERFKGLVEVASPDLVVAIGPLGLSEPLKLGRTWFFVRGKEDSLTPLAKSDGIDMLSRVFRTKEGVTFSGISGYYDPVASKFTRAQWVKARGKLSKRHGNAVFAEDIEALLVPFQRAGIERLDFLVLADSPERPPFKRVVEVTRPRYLFYPAASYRKERVGDTVYIGLEDVDSPKGKYLLKL
>NC_014926.1|WP_013537084.1|288118_288790_+|response-regulator-transcription-factor
MARVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLDLCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRAGYSEVLEFEGIVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWGVEHNETTRTVDVYISRLRKKLGDKGKFLKTLPRLGYKLTREE
>NC_014926.1|WP_013537083.1|287733_288108_+|cytidine-deaminase
MKSVELLKVAREHLENCYCPYSGVQVVAVLFGPKGPVVGVNVENASYGLTVCAERSAVFSAVSRGLRDFEGIFIYSPQVMPYPCGACRQVLSEFFPEDFQVVVTNGKEEEKFTLGELLPFNFKL
>NC_014926.1|WP_013537094.1|302421_302673_+|hypothetical-protein
MDVVLFVIAVTFLMNLPFGWLREGVRKFSPQWFLYVHLPIPFIIALRIGLGVPWKFAPLLIVVAILGQAVGARLRRRQMVVEE
>NC_014926.1|WP_013537095.1|302672_303203_+|ATP-dependent-protease-subunit-HslV
MDFHGTTICAVLRDGKVAMAGDGQVTLGNTVFKNGARKVRKLYGGRVLAGFAGSVADAFSLLERFEDKLQTYGGNLLKSAVELAKDWRTDRILRRLEAMLLVADKSRILLISGNGDVIEPDIPVMAVGSGGPYAQAAATALYQNTELPAAEIARKALEIAGNICIYTNTNIVVEEL
>NC_014926.1|WP_013537096.1|303212_304655_+|ATP-dependent-protease-ATPase-subunit-HslU
MLKRLFGGEEPRRESGSTEEFLTPRRIVEELDKYVVGQREAKKAVAIALRNRWRRQRLPEEMRDEVVPKNIIMIGPTGVGKTEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVNMVKEEKMAQVEERARELAYERLAEYMVPEPKHPQQQSVQNLFDIFFPSPARQKDHDYEAELSRLKDERNRIKKLLKEGKLDDEIVEIPVTVETTPGINVVGLGGDISNLQDVLSSILPKPKKLRKMKVKEAIRYLTQEEASKLIDMDEVIREAIDRAENQGIIFIDEIDKVASREGARGPDVSREGVQRDLLPIVEGSKVSTKYGLVRTDHMLFIAAGAFHVAKPSDLLPELQGRFPIRVELKPLTKEDFVRILTEPKNALTKQYKALLETEGVELEFTPDGIEEIARIAEEANERAENIGARRLHTVMEKLLEEVSFMAPEMKGQKVVVDRDFVREKLSDIIQDEDLTKYVL
>NC_014926.1|WP_013537097.1|304663_305695_+|aminopeptidase-P-family-protein
MRLEEIFQKVPVIGEAYLTFSQPENFYLTGFRSTFGVTVVTAKGDALFLTDGRYFEEAKKQVKNFKLVLWKGWETLKEVLKGLSLESVSVDPSRLSLANYRKLQEFIQVVEAPGFISQFRARKTPREISLITRAVQIAELSLKSVLHLLKPGITELEFRRELINAFFKFGGEGEAFPTIVASGPGSAIPHWQTSNREIKDGDVVIVDFGTVYGGYVSDITRTFLVGNVPSQMKEVYTVVKEAQELGVSLLKAGKACKEMDSAVREFIASKGYGEFFVHSLGHGIGIEVHEAPTLSIRSDQVLQEGNVVTVEPGIYIPELGGVRIEDDCLVTVEGSFLISHVIV
>NC_014926.1|WP_013537098.1|305684_306545_-|hypothetical-protein
MGWYKLVFRQEQPIHIGSFKWGVIKETAIFIPGQTMWGALTNHFSIFFKDEAAKLDKDETSSLFEEITNFYPSFDANGTKLLKPSYKEGMFCFDINSNCLYEDMFRFYLVDNIIQTAIEPLSRRAKDESLHELDFILPNPKQEVPFKDFSIEKHEQIHWIGFVNLKEQEHENYLKNMKNRPIYIGGDVRYGYGELSLIEVIEVSDDRTKDEWQLEKIPQNSPSLHFIDLNLVKEYEVEGEIILLTKFKFGKNTPVIEEADFFLNVGSKVEKEITDFKIRLGRVVKR
>NC_014926.1|WP_041439369.1|306547_306904_-|hypothetical-protein
MSNQKVESLEALISKISYEIVSEGILEETEINKLLGVLANNGVYAMWVWARSRKDINDHALFNELMRVMKFVKEKSEEESFENYFQSISEDLHKLLFIKQLLEKTLIYARYHAKSLGD
>NC_014926.1|WP_013537100.1|306896_308084_-|hypothetical-protein
MSQRTGNNNPVKELEIFAMASDPIYIGTGGYTIGRVDNTIVRDPITNVPKIPGSSLAGTWRYYVVLEVHKYFSNDKFKINKSERKNKLNEFLRSKGKSIWSALDSNERKEFMKQIFNIEDSNNKKWILFEGNRFIGIKCAGQDEAPDKYFEDLNDSVENTGHCGHCIVCKGFGFSKKDISWQGMLFFSDLEIILFPVFTIKGTKWITTASKLRKTGIDESKPTDKKIRIHNSEEDISHLNLGWLYLEVDTSKHNISLTNDISEFGSFKLEPKDIIIVPEDLFPHIVNSNLEVRTSVSIDPITGAAKEGALFTSEAIPRGTIFYGNIRIFDKKSFGEIEEKLTPLPEVGDLKNALEDSKHFYETLGIGGMTTRGFGRLVINLQEKKNNSDGGNQDV
>NC_014926.1|WP_013537101.1|308085_311181_-|CRISPR-associated-protein-Csx11
MSGLDLNRLEQYRGEILKAEIGSLFALWEKVVGLNKQEDMDLELENLFSIDVHILGERFYLYKDFLKNWRNKWDNLLKIYYNLSEITNSQFEKANIKSEKINNLSNPFGAIKDSKYTRGDFTKDELIKEIKKIFFILGDTKKEEYQNKIDEIYKNCIGLKIKLKKYLDNLISDDRFPNNEVSLWQQTFVTSSLFKALISNYILTSKVVESIREVKWRILGIQYDKFGLAEKGLKLASIQWYREITEKIDEEIKKLLEVEYPIGNEIYRDETGIYFIVGDNLGADENVNMTKLKNELRELENKIYEIFERETEDEFYPAIFLTKASRGLMNLSYLLENAKNNFLKAKRKKDLNLWLLRTKKGKAIGICPICQVRLIYESDKEKNNSPTICEVCDNRTHHKQVSQWIDNISGETIWLDEVKDKNNRVAYISLKFELEDWLNGNLLNTIIKIEENKSQQLIESIKENIISKKKRVDKDWLHLSFTRNEELKKVGNLNAESLFFDNILGTQWESWIKETSLNSKIDWINEKIKWEEFTSESDPAVDLLAILLLQFLLRKNPSPARLRRIWETTREFFEDIHINLDTILDIPKWRKQRICFEIENENIANKIKSTGEELEGDGLLYWAQPKGNKVRFYLISSIEDFIKKYGNKSKEILGELRKESNPENIEKLNEKLNNLFSSIEQERNFLQEFNFHSIKFRRSNDKNELFSISSSDIKAIKFISYKPFAKITDPSPKSYQVVIPAEYLEKFIDGVMERYNREFKYVHGKLPLHIGIVVSHYKRPAYVNLKALRRIRRDVKDINKLYESKCISEFCIYQKKKLSLASIEESINNTERYYSLYWNNMYEKDYNFYIKPNNNWKKWISTIDKFPQNSSVEIVSNTFDFEFMDTNTRKNDIFYDENNKYKRAIKRKSNRPYEIEKYWDKFKAFKKLITGKNYQRSRLFKIVEFIYSKLPEIEDENFGTDYSYMFAPMFYRYLDLHDINRRILFKEIFDIDVNLNSQEYLEKLREALSNTKNLYLFIDMFEFWHTMLKEV
>NC_014926.1|WP_013537102.1|311168_312332_-|CRISPR-associated-protein
MAKFEVYVEYKENSGEIFRKTENSFKSFIRLKFGYVKNKTKELENHKGSIKNRKNKKYEIGNNQQIKRISGIFENDENNNLSNLQSYVEKLPKYSFAIWFKFKLKAPYFSKDDDEFYIIQNPILKETNFKVPMIRGSAWKGALAHAFRELINKANTLENSRKAIESFLRIFGAGSESIKTLEEYLKNKLKRNEHENLQKYKEEFLKFVLFELGLEINQELIENVNNAQNYKDISNLLAVKVWEKYKNSYSYLSLEFQTHKGRAIFYPTYFDELSLEIINPHDRRKRAGKNPIHYEVVPAGTEGIFQLIYIPFDGILKTDEELREEIQKDLGNLIEALKVLANKGVGAKTKLGWGRFEILESEKKICLDKNIELPEKPKNKGWERCQD
>NC_014926.1|WP_013537103.1|312324_313587_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKKEIAVKFNTITPLWTGDAWRENCEIRPSSLIGSLRFWFEVICYFSGICKRKHFSPKLGRFEKEVNRKDFKNCLANKGNSFKDKIKCLLEQDIPYPSIIFGTTNWKSLIEIKEIKYSSGYCFGDKLNLPNRICLNKVNYEIKENGDCPQRSNKTWSVFYFAKPYFYGNFEVIFEVEEEIIELIFYPLLTFMDKYGFWGGKWNIGYGRLEVLEVKENNNNNPINNWRKTDFELFDKTHFSKTHFSWKELVLSCEIGLNSSPHSSILYINKKNFQFNCKKEEVFKENIKNIPERFIIFRLSENSDSSNIYENIKYLLKKKLDIRDCLRHICEEKEQNNKSKFENECFNNRKEFQKNKEIECKGKSYKCEDIMQWKKFRHKLLGERGEGSKILPFIHKENKQLKAGFLSIAGLLNLEGKSDG

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Crispr_ID: NC_014926_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_2

321209-321633

TypeIII

Consensus_repeat	Method
GTTTGAAATGCCCTATAA-------GGGATTGTGAC	PILER-CR
GTTTGAAATGCCCTATAAGGGATTGTGAC	CRISPRCasFinder
GTTTGAAATGCCCTATAAGGGATTGTGAC	CRT

6 spacers

The CRISPR arrays of NC_014926_2

>merge|NC_014926|2|321209-321633|PILER-CR,CRISPRCasFinder,CRT
GTTTGAAATGCCCTATAAGGGATTGTGACGTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGGGTTTGAAATGCCCTATAAGGGATTGTGACTTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTACGTTTGAAATGCCCTATAAGGGATTGTGACACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCGGTTTGAAATGCCCTATAAGGGATTGTGACCAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGGGTTTGAAATGCCCTATAAGGGATTGTGACTTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAAGTTTGAAATGCCCTATAAGGGATTGTGACCCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAGGTTTGAAATGCCCTATAAGGGATTGCGAC

>NC_014926|2|1|321209-321633|PILER-CR
GTTTGAAATGCCCTATAAGGGATTGTGAC	GTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTAC
GTTTGAAATGCCCTATAAGGGATTGTGAC	ACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCG
GTTTGAAATGCCCTATAAGGGATTGTGAC	CAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAA
GTTTGAAATGCCCTATAAGGGATTGTGAC	CCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAG
GTTTGAAATGCCCTATAAGGGATTGCGAC

>NC_014926|2|2|321209-321633|CRISPRCasFinder
GTTTGAAATGCCCTATAAGGGATTGTGAC	GTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTAC
GTTTGAAATGCCCTATAAGGGATTGTGAC	ACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCG
GTTTGAAATGCCCTATAAGGGATTGTGAC	CAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAA
GTTTGAAATGCCCTATAAGGGATTGTGAC	CCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAG
GTTTGAAATGCCCTATAAGGGATTGCGAC

>NC_014926|2|1|321209-321633|CRT
GTTTGAAATGCCCTATAAGGGATTGTGAC	GTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTAC
GTTTGAAATGCCCTATAAGGGATTGTGAC	ACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCG
GTTTGAAATGCCCTATAAGGGATTGTGAC	CAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGG
GTTTGAAATGCCCTATAAGGGATTGTGAC	TTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAA
GTTTGAAATGCCCTATAAGGGATTGTGAC	CCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAG
GTTTGAAATGCCCTATAAGGGATTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537119.1\|328103_329546_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NC_014926.1\|WP_013537109.1\|317790_318150_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537114.1\|321812_323255_-\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NC_014926.1\|WP_013537106.1\|315155_315659_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|234762
NC_014926.1\|WP_013537116.1\|324610_325621_-\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NC_014926.1\|WP_013537115.1\|323258_324554_-\|potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NC_014926.1\|WP_013537112.1\|319595_319874_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NC_014926.1\|WP_013537104.1\|313675_314776_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_014926.1\|WP_013537107.1\|315670_316750_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NC_014926.1\|WP_013537110.1\|318163_318856_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NC_014926.1\|WP_013537122.1\|332736_333456_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NC_014926.1\|WP_013537117.1\|325617_326949_-\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NC_014926.1\|WP_013537118.1\|326995_328120_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238637
NC_014926.1\|WP_013537113.1\|319848_320901_+\|LysM-peptidoglycan-binding-domain-containing-M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|180536
NC_014926.1\|WP_013537105.1\|314777_315068_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537120.1\|329566_330238_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_014926.1\|WP_013537108.1\|316761_317778_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_014926.1\|WP_013537124.1\|333605_334157_+\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|234759
NC_014926.1\|WP_013537111.1\|318855_319605_+\|patatin	unknown	unknown	gnl\|CDD\|132844
NC_014926.1\|WP_013537121.1\|330265_332740_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537119.1\|328103_329546_-\|HD-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	2.41316e-44
NC_014926.1\|WP_013537120.1\|329566_330238_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.81634e-111
NC_014926.1\|WP_013537114.1\|321812_323255_-\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.56264e-94
NC_014926.1\|WP_013537106.1\|315155_315659_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|234762	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed.	8.30027e-108
NC_014926.1\|WP_013537116.1\|324610_325621_-\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.52226e-80
NC_014926.1\|WP_013537115.1\|323258_324554_-\|potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	8.0209e-95
NC_014926.1\|WP_013537112.1\|319595_319874_+\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	3.91783e-34
NC_014926.1\|WP_013537104.1\|313675_314776_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_014926.1\|WP_013537107.1\|315670_316750_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_014926.1\|WP_013537110.1\|318163_318856_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.65439e-123
NC_014926.1\|WP_013537122.1\|332736_333456_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	6.25138e-80
NC_014926.1\|WP_013537117.1\|325617_326949_-\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	7.60068e-129
NC_014926.1\|WP_013537118.1\|326995_328120_-\|amidohydrolase-family-protein	gnl\|CDD\|238637	cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	1.8687e-41
NC_014926.1\|WP_013537113.1\|319848_320901_+\|LysM-peptidoglycan-binding-domain-containing-M23-family-metallopeptidase	gnl\|CDD\|180536	PRK06347, PRK06347, 1,4-beta-N-acetylmuramoylhydrolase.	5.81588e-26
NC_014926.1\|WP_013537108.1\|316761_317778_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_014926.1\|WP_013537124.1\|333605_334157_+\|macro-domain-containing-protein	gnl\|CDD\|234759	PRK00431, PRK00431, ADP-ribose-binding protein.	2.88487e-75
NC_014926.1\|WP_013537111.1\|318855_319605_+\|patatin	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	2.44829e-46
NC_014926.1\|WP_013537121.1\|330265_332740_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0

>NC_014926.1|WP_013537113.1|319848_320901_+|LysM-peptidoglycan-binding-domain-containing-M23-family-metallopeptidase
MRSLLLLISLLFACNAALGEVIYRVKRGDSLGKIAQKFHVTVRELKRANRLKGNTIYVGQKLVIPVKSNGRLKREKSATRTVYRIYRVKRGDTLGKIAARFHTTVRELKKINRLRSNRIYVGQRLKVPVRVKVASASSSKAATSAGIVRKGGAVFVPEGLTKVPIYKYYRVKRGDSVLKIAKKLHVSPRMIIRLNHLKRPYILRPGQRLKILVGYKDVLKLNRPIAFRFPLDGRVDPTVREKGYPGIFILSPPGAPVKAAETGIVKFAGEDSKLLKAYGKMVIIQHPEGYRTVYANLGSIDVKPNQLVKRGQVIGTAGTSGVWGRSGIYFDISKVYRGKTYHINPLEVLK
>NC_014926.1|WP_013537112.1|319595_319874_+|acylphosphatase
MAVKAIHAFVSGRVQGVGYRAFTRKVARELGLVGFVRNLPDGRVEVYAEGEEEKLQELLRHLKKGPYFARVDSIEVTTTEPRGGYEEFVITY
>NC_014926.1|WP_013537111.1|318855_319605_+|patatin
MRIGATLSGGFVKGVAHIGFLEALEYKGIPPSFVAGSSAGALVGALYSFGLSTKKILEIAKGLSWKDLARPSLKGGLFKLEGLYSILKEIVGDARIEELPLPFGLAVVNLRTLKVEFKREGPLADLVVASCSVPPLFSPWKVGSDYYADGGLRNCLPAEMAKAAGVELNVCCSVNGYTYAFNPNSLLDVAVRASLATVIENQETRERYCDIIVNLSLEGNPLSFDMVELFYRTGYDETLKKLEGGVPWL
>NC_014926.1|WP_013537110.1|318163_318856_+|metal-dependent-hydrolase
MAKLWYLGHSTFYLEGEGVKALIDPFLSGNPWKIASPEDFTDLNYIFVTHGHGDHLGDAVEIAKRTGATVVSIFEVCQYCNLKGVNNIHAMHIGGSYNFPFGRVKLVPAAHGSSVIENDQVITLGTPCGILIEVEGKTVYHAGDTGLIADMELLGRYEDIHIALLPIGGNFTMDVRDAAIAAEMVKPKLAVPMHFKTWPIIEAEPEEFKALAEARGVPVEVLQPGDTLEF
>NC_014926.1|WP_013537109.1|317790_318150_+|hypothetical-protein
MEELLKQLLSENPELQALLVVDEEGIVVYKESREGLPFDPEEAAVELITPSTRIDEFLHDSLEEEKGLEEFIVFSRRYLFLVYKLVNETFLVAVSSRTPLYGRLRFRLRSKLKEVIKQL
>NC_014926.1|WP_013537108.1|316761_317778_+|aspartate-semialdehyde-dehydrogenase
MKGYTVAVVGATGAVGQEMLKILEERDFPVAKLKALASARSAGKKVKFKGEEVTVEELRPESFEGVDIALFSAGGDRSRQFAPEAVKRGAVVIDNSSAFRMEPDVPLVVPEVNPEDVEWHKGIIANPNCSTIQMVVVLKPLHDLAKIKRVVVATYQAVSGAGAQAIEELKEQTKAVLEGRPVPPANKIPRQIAFNCVPHIDKFFDDGYTREEHKMINETKKIMHDDSIKVSPTCVRVPVFVGHSEVVNIEFEKPITVEQAREALERAPGVEVVDDFKNHIYPTPIDVAGKDPVLVGRIRRDDTIENGLNLWIVGDNLRKGAALNAVQIAELLVEKGLV
>NC_014926.1|WP_013537107.1|315670_316750_+|3-isopropylmalate-dehydrogenase
MRKFKIAVLPGDGIGPEIVKQAVKVMEAAAEKFGFGLELNYGLIGGAAIDETGVPFPEETKELILSSDAVLLGAVGGPKWDNLPFEIRPERALLGMRKLLNAFANLRPARLYDELIDASTLKPEVVRGVDIMVIRELTSGIYFGIPKGIFVDGDERVGINTLRYYEHEVERIAKVAFEVARKRNKKVTSVDKANVLEATVLWREVVERVHENYPDVELQHMYVDNAAMQIIRWPKQFDVIVTTNMFGDILSDACAMLTGSLGMLPSASIGGKIGLYEPIHGSAPDIAGQNIANPIATINSAGMMFTYSFDMPEVEEAIDKAVRAVLAKGYRTRDIYSEGTKLVSTEEMGDLIAEELKNL
>NC_014926.1|WP_013537106.1|315155_315659_+|3-isopropylmalate-dehydratase-small-subunit
MSEVLKGRAFKFGDDVNTDEIIPARYLNTSDPKELAKHVMEDADPEFPKKVQPGDIIVAGKNFGCGSSREHAPIAIKAAGVSAVIAKSFARIFYRNAINIGLPIFESPEAVEGIEEGDVVEINPETGVIRNLTKGTEFKATPIPEDIRKIMEAGGLMEYAKQKLGLK
>NC_014926.1|WP_013537105.1|314777_315068_-|hypothetical-protein
MTVKIIEREVQKRIKVNSSEFWKALKEKGEVEVYLKRGEVIVLDAVLKCREKEECFKEIGKLLKKIANHEGLKGFLVVRTKRGEILVNKVIFSPID
>NC_014926.1|WP_013537104.1|313675_314776_+|tRNA-guanosine(34)-transglycosylase-Tgt
MKFRILAQEGFARSASFMGTHGQTETPCFMPVGTLGAVKGLTWEQVKGMGYSLVLANVYHLYLRPGLEVIEAAGGLHSFIGWNGLILTDSGGFQVFSLGRLMKIKEEGIEFRSHVDGSKHFFSPEFVVEFEERIGVDIGMVLDECTPYPATYEYAKHSMERTLRWAKRSIEARTTDKTALFGIVQGGVYEDLRLKCVEELVKLPFDGFAIGGLSVGEPKEEMYRITRLVAPKLPPDKPRYLMGVGTPEDILEAVEAGVDMFDCVMPTRNARNGTLFTSRGKINIKAAKYRKDFSPPDPECDCYTCRNFSKAYLRHLYASGEMNASILNTIHNLHFYAKLMERIREAIKGGYFTEFKREFLAKYRGG
>NC_014926.1|WP_013537114.1|321812_323255_-|TrkH-family-potassium-uptake-protein
MRFQLVFKYVATLLFFLSLSYFIPFFYSLWCKDGLFHYYLYPVALTGALFLIALQIEGGELNIKEALLTVSLTWFLFPAISALVYQETGAIKNFIDAYFESVSGFTTTGASILTNIEALPKSVLLWRSTTHWIGGVGFVVFSLSVLPAFGAGGAQLMRFEASKAVEERLVPKVKEMARVILAVYVALTAAEVIALVAAGMPLYDAVNHAFATIATGGFSTKNGSIGEYHSPLIEVIVSFFMLAGATNLLTYYLALKNRSLKAIYSYYEFRSFMAIVAFAVAFTTLVLYFKGTYHSLLEALRFGSFAVISAITTTGFGVADYTKWPPVTQALMMLLEIMGGSSGSTAGGLKQFRIVTMAKTTYYEMKKTLHPRMVYRIVLGKKVVDYSLMNNIWAFISIFFSTTLLFGFLISLSGHDIITSFSASVACITGSGPGLEKVGPAGNFAFFSPIDKLLLSIEMVLGRLEVMSVLTLLLPSFWKE
>NC_014926.1|WP_013537115.1|323258_324554_-|potassium-transporter-TrkA
MRVAIIGAGVVGSYLAKRLSKEGYEVAVVDVDPSKVEQIAYSYDVLGVTCNALEVNCLKQVKDFDLFIVVTENDEKNVSIAVLLRSLFQKKHIIVRVNNKAFSSPPVKELLGYETVNVLSEVVTTVVMAVRYPFALSVSRLENEGLLIFKYEVKVEDFLAGKRLEELQEARRSVEFTVVAVEREGEILIPNGKTTLYPGDKIYVAVKEQDVYRLVETLQISYTPTRLVFVLGYSRYTDEILLKLSETKEVTVKFISPDLSVCEEIAGKFPNVMVLHGEPTDVELLKEEEIEKADLTVAVSDDEESNVLSAILAKKFKCKRACALIFHPEYETIIESIGVDIPIVPRKLIASKVYRSLSKRAVLEFLELAENLDVIEIRVSAERSFKVKEAKQFLKGECNLIIAIKRGNTVLLATGETVIEPGDTVICVKRR
>NC_014926.1|WP_013537116.1|324610_325621_-|c-type-cytochrome-biogenesis-protein-CcsB
MTITSVTLFNAGMVAYFLAFLFYTIYTFSKSSWSSKLATGFAWLGVIIQGAGFILRGIEKARVNMVSDWTAFYKYAPFTNMYESLMLFGWTAVLLYLLFEWKYKNKAFGMFVIPLALIGELSTQILGFSEEAQPLVPALQSNWLLFHVVTTFIGYAAAAVSAGVAYAYFAKRDDTTAKDWAVVFVTTWFIFFFIIYSAYRENVPLFLAVSAVAAAIFCGILYLIKKTGVSKIFPSTQLMEQIMYQSVAVGFVFLTIGIILGAVWAKYAWGGYWSWDPKETWSLITWLVYAAYLHARYIKGLSGKPLAYFTIVGFLSVIFTYYGVNLIIPGLHSYAQ
>NC_014926.1|WP_013537117.1|325617_326949_-|cytochrome-c-biogenesis-protein-ResB
MFKAIYDFFSSVKLAIVLLLTLAVTSIVGTIIEQQQNPEKYLMEYGETTYKIMKFLGFTDVYHSWWYISLLTLLAINLIVCSIKRLPKIWKVAMEPRKTLPPGYEKSLRVSHSITLSAPAQAVKEKVIEALKQLKYKVEVAKETENEIHVFADKHVFARFGVYIVHLGVLVVLIGGLVTAIFGYRGYMNLAEGTASNLVSFFSGPKIIELPFYVKCNKFKIDFYPSGMPKAYISDLTIIENGKPVLRKTIEVNKPLKYRGIYFYQASYGQGEAFLRVRDTKGHEKLVGVAFGQPVKFGKGVYLRIVSLDGNTGTLGVELIENGKVQDATIRPFMFYRVPGTDKLFSVVDFKPVFYTGLQVSKDPGTWIVWVGSTILIVGLIVAFFVPHRRVWARIEKKGEEKTRLVIGGLTNKGTEGLAQDLEKVLGVLKSSYCQNTPKEDES
>NC_014926.1|WP_013537118.1|326995_328120_-|amidohydrolase-family-protein
MRAVINPSWAVKPNGEVLKNPFIVIKNGRIEAYHRRKPEGEFKKWIQIEGVLYPPFVNCHTHLELSNLNFNPDNFKDFFQWLLWIIGSRATKTLPEIERAVRKGAELIKKSGTYYVGDISSFGVAPSVKLPVKAVTFREFIGKDLNPKEIPPPLSIHSIYSVSATAIKKIATDSLERGYKFQMHLAETPDEQLFAKCLPNRFESLIYPTIGRKRYEKLCAEGIVDYLKKLNALNENLIAVHCTNLSPKEAKELRKAKASAVLCPRSNLHLKTGFPPVEELLTLEKVGLGTDGLSSNVSLSVVEELRCLYYQLGCRVPLRELLPLITYKGAKVLNLQHYGETALFTVAKGNHSTPFEPLIKEGQQFGILDFSNTL
>NC_014926.1|WP_013537119.1|328103_329546_-|HD-domain-containing-protein
MEKRIHKFTFYHPKLEKLQECLVNGRCYIVGGFIRDRLLRVAKEKVDIDVVCFKPQECARCIEETLKKKPFVIEREKAVFSFCGPDWRIDLTRVDGATVEEDLLKRDFTINALAVDLRELFLPFNDDALIIDPTGGLEDLQKGLVRPVSEGALRADPLRVLRGVRIKNELDFTYHPSFLKLAREAAEGLKSVAPERIKEELVKCLKGGFFALALRELDEIGALFPVFPELQGIEKVPPSGFHQFNLKEHTLRTVEWVERLAERAEEMLSEEAEVLFKNSHLPELPDIGLLELAALYHDVAKPQTMKEENGKLTFYGHDALGAEIAFNAMLRLSFGKRSAKLVKNVIRHHLRPFFLFELFKKGELTERAIYRFFRDTKPYAPHVLLHGAADLCATSREKEKELPLYTEFTRHLIKFFKERIKNLKPLLTGEEIMEIKGLSKPGKCVGKIKEKLLELQALGKVSTKEEAAKLVKGIHCESGN
>NC_014926.1|WP_013537120.1|329566_330238_+|ABC-transporter-ATP-binding-protein
MEVIIKAENLVKVYRSEGDEVVALKGVNLELTAGEFSLLMGASGSGKSTLLHILGTLDRPTEGRVLYRGRDLFALPEGELAKFRNRKVGFVFQFHYLINELTLLENVMAPLLVGGFPRDEAAVRAEEVLKRVGLGHRLSHRPFEVSGGEKQRTAVARALVTEPEVVLADEPTGNLDSQTARSVVELMRELNRELGTTFLIATHNSELESFADKVYFIKDGVIL
>NC_014926.1|WP_013537121.1|330265_332740_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTTKARQIIIKAKEQAVSLRCEKLGTEHILLSLLKEDEITNQILARYNISKARIQEIILSQIQPAPYEVDINTVTFSTEARRVLEHAVEEAKLMASPYVGPEHLFIALAKEKLGLAGRILRSYGLDHYTLRREVATLLKGITTEKKGPKKSSTPNLDKFGRDLTKLAEEGKLDPVIGREKEIERVTHILARRRKNNPVLVGEPGVGKTAIVEGLALKIAKGEVPEKLKNKRIVSLDMASLIAGTKYRGQFEERLKAIVKELENNKDVILFIDELHTLVGAGAAEGSMDASNILKPSLSRGEIQVIGATTIDEYRKYIEKDGALERRFQPVMVEEPSVEDTIEILKGLKPKFEEFHNVVITDEAIERAVKLSVRYINDRKLPDKAIDIIDEAGAKAQLQVSAKDDRVRALEKKIEEVKALKEEALAMAEYEKAHEYKQKELKLLAELEELKREARLRQKQERVVIDEKKVEEIVALWTGIPVQQLQEKEAEKLKRLEEELHKRVVGQHEAVEAVAKAIKRSRLGIRANVNRPIGCFLFLGPTGVGKTELAKALAEYLFGDEKALIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVLNILLQIMEDGRLTDGLGRTVSFTNTILIMTSNLGAKHLISAQRGMGFEVADGKEEERSFERMKSLVLDEVKRYFKPEFINRLDGIVVFHPLTEKEVKEIVKKQIERLNKELEEKGLKVHVTKKFIDYIVAREFKKEYGARTIRRAIQTLVEDRLTDEILMGRFTEGGEVLFDVTPKGRISVREKKKRKKTEKPTELANK
>NC_014926.1|WP_013537122.1|332736_333456_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRRFKVDSIKGSVAYLRGQEARHALKVLRLKKGDEIIVFDGEGKEYSAVIEAASPTSVKLKIVEEINVNRDSPLNSTLYMGLTNKLQKFELALQKVTELGVTRIVPVVCARSSTAQLVKNWSGKMRRWQEIVVNAAKQCGRSVLPELLEPVPLPEVEDDSDLKFVLWEKGGKSLKNYQDYVASSVSLLVGPEGGLEKGEIELLESKGFKPIYLGKRILRAETAAIAGVTLVQFIWGDLG
>NC_014926.1|WP_013537124.1|333605_334157_+|macro-domain-containing-protein
MKVLAEREVNGCTFKAVQGDITEESTEAIVNPANSLLKHGGGVAGAIVRKGGAVIQKESDALVERNGPVPVGSAVYTSAGNLKAKYVIHTVGPVWGEGNEEEKLRRAVRSALRVADSLGVSSVALPAISTGIFGYPKREGVKVIVSEAVNYFKDTPNSSVKELHFTALDSETAELFKEALENL

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Crispr_ID: NC_014926_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_3

571094-571898

Orphan

Consensus_repeat	Method
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	CRISPRCasFinder
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	CRT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	PILER-CR
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	PILER-CR

10 spacers

The CRISPR arrays of NC_014926_3

>merge|NC_014926|3|571094-571898|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACGGTCTAAAGAAATCTAAAGGTTCATGAATTGCAAGTAAAGCTTTGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACGATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATTGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACGGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGGGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACAGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAGGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACCTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAAGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACGAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTAGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGAGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACGTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTGGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTAGTTGAAATGCCCGAGAAAATCGGCGGGATTGCGACCTCGCACCTCCTCTTTTAGAGTTTTCGGGGGAGGAGGCGCGCCGTTGAAATGCCCGAAAAAATCGGCGGGATTGTGTT

>NC_014926|3|3|571094-571898|CRISPRCasFinder
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGTCTAAAGAAATCTAAAGGTTCATGAATTGCAAGTAAAGCTTT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	CTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA
GTTGAAATGCCCGAGAAAATCGGCGGGATTGCGAC	CTCGCACCTCCTCTTTTAGAGTTTTCGGGGGAGGAGGCGCGCC
GTTGAAATGCCCGAAAAAATCGGCGGGATTGTGTT

>NC_014926|3|2|571094-571898|CRT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGTCTAAAGAAATCTAAAGGTTCATGAATTGCAAGTAAAGCTTT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	CTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA
GTTGAAATGCCCGAGAAAATCGGCGGGATTGCGAC	CTCGCACCTCCTCTTTTAGAGTTTTCGGGGGAGGAGGCGCGCC
GTTGAAATGCCCGAAAAAATCGGCGGGATTGTGTT

>NC_014926|3|2|571173-571427|PILER-CR
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACCTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAAGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA


>NC_014926|3|3|571470-571820|PILER-CR
	GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGACCTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAAGTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG
GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC	ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA
GTTGAAATGCCCGAGAAAATCGGCGGGATTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537372.1\|564623_565346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_014926.1\|WP_013537387.1\|577602_579021_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_014926.1\|WP_013537374.1\|566062_566557_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NC_014926.1\|WP_013537376.1\|566987_567764_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_014926.1\|WP_041439399.1\|566556_566988_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_014926.1\|WP_013537386.1\|577248_577587_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NC_014926.1\|WP_013537373.1\|565342_566059_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_014926.1\|WP_013537385.1\|576710_577121_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NC_014926.1\|WP_013537371.1\|564037_564604_+\|septum-formation-protein-Maf	unknown	unknown	gnl\|CDD\|376812
NC_014926.1\|WP_013537380.1\|570090_570612_+\|peptidase-zinc-dependent	unknown	unknown	gnl\|CDD\|213029
NC_014926.1\|WP_013537381.1\|571984_572806_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537382.1\|572792_573578_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350160
NC_014926.1\|WP_013537388.1\|579717_580977_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_014926.1\|WP_013537378.1\|568572_569115_+\|NTPase	unknown	unknown	gnl\|CDD\|237475
NC_014926.1\|WP_013537389.1\|580976_583448_-\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378929
NC_014926.1\|WP_013537379.1\|569086_570091_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|376546
NC_014926.1\|WP_049767033.1\|579238_579721_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_014926.1\|WP_157629605.1\|567751_568573_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293827
NC_014926.1\|WP_013537384.1\|575359_576583_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NC_014926.1\|WP_013537383.1\|573580_575260_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224705

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537372.1\|564623_565346_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00023427
NC_014926.1\|WP_013537387.1\|577602_579021_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NC_014926.1\|WP_013537374.1\|566062_566557_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	9.42428e-100
NC_014926.1\|WP_013537376.1\|566987_567764_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	2.84515e-145
NC_014926.1\|WP_041439399.1\|566556_566988_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	6.39374e-80
NC_014926.1\|WP_013537386.1\|577248_577587_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	1.43195e-56
NC_014926.1\|WP_013537373.1\|565342_566059_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	9.724e-14
NC_014926.1\|WP_013537385.1\|576710_577121_+\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	2.03194e-34
NC_014926.1\|WP_013537371.1\|564037_564604_+\|septum-formation-protein-Maf	gnl\|CDD\|376812	pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.	5.08421e-75
NC_014926.1\|WP_013537380.1\|570090_570612_+\|peptidase-zinc-dependent	gnl\|CDD\|213029	cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins. Peptidase M54 (archaemetzincin or archaelysin) is a zinc-dependent aminopeptidase that contains the consensus zinc-binding sequence HEXXHXXGXXH/D and a conserved Met residue at the active site, and is thus classified as a metzincin. Archaemetzincins, first identified in archaea, are also found in bacteria and eukaryotes, including two human members, archaemetzincin-1 and -2 (AMZ1 and AMZ2). AMZ1 is mainly found in the liver and heart while AMZ2 is primarily expressed in testis and heart; both have been reported to degrade synthetic substrates and peptides. The Peptidase M54 family contains an extended metzincin concensus sequence of HEXXHXXGX3CX4CXMX17CXXC such that a second zinc ion is bound to four cysteines, thus resembling a zinc finger. Phylogenetic analysis of this family reveals a complex evolutionary process involving a series of lateral gene transfer, gene loss and genetic duplication events.	6.2145e-51
NC_014926.1\|WP_013537382.1\|572792_573578_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	6.20559e-90
NC_014926.1\|WP_013537388.1\|579717_580977_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NC_014926.1\|WP_013537378.1\|568572_569115_+\|NTPase	gnl\|CDD\|237475	PRK13695, PRK13695, NTPase.	5.64405e-58
NC_014926.1\|WP_013537389.1\|580976_583448_-\|DUF2800-domain-containing-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.00637e-09
NC_014926.1\|WP_013537379.1\|569086_570091_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|376546	pfam01430, HSP33, Hsp33 protein. Hsp33 is a molecular chaperone, distinguished from all other known chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive cysteines that respond quickly to changes in the redox environment. Oxidising conditions like H2O2 cause disulfide bonds to form in Hsp33, a process that leads to the activation of its chaperone function.	8.01135e-113
NC_014926.1\|WP_049767033.1\|579238_579721_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.85585e-14
NC_014926.1\|WP_157629605.1\|567751_568573_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293827	cd07741, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.14112e-101
NC_014926.1\|WP_013537384.1\|575359_576583_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.46628e-108
NC_014926.1\|WP_013537383.1\|573580_575260_-\|hypothetical-protein	gnl\|CDD\|224705	COG1792, MreC, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	0.00200654

>NC_014926.1|WP_013537380.1|570090_570612_+|peptidase-zinc-dependent
MALASLYTVGVALPFVEEEAEKVLKEKFNLSPRFEGALPPDSTGARGSQLLAEVQLQHALALKPSDSLFVVVLTPYDLYSNGLNFVFGVAYPFKGCIVSYARLISEDDSLFLSRFRKELTHEMGHVFGLPHCPNPSCVMHFSNSLADTDAKSENFCQLCSEKLRRVMVELGLI
>NC_014926.1|WP_013537379.1|569086_570091_+|Hsp33-family-molecular-chaperone-HslO
MEKKEQKNLKVLPQREQLVKELTDQVKEDLKNYFKDRDYGVIAVTREDALRAFIVKTTNLCEIARLRHKLSPMATAVLGRALTGAILLTSLLKHGTNQRVLLRIEGDGPIGLVVAEANAKGEVRGFVQNPNVETFIKEENGRKKFDIAKAVGKGTLTVVKDLGFGTPYESSVPLVSGEIAQDIAYYLLKSEQIPSAVAIGVLVGEDGKVEAAGGFLAQPLPGASESAVEKLEKNVTSLPPVSTLIKEGKRPEEIAELIFKGFTTELLALKELSFRCRCSKEVAKGGIVAMPEEEIKSLIQEGGASVKCKFCGEEYHFSKEELEEILKEKQQGNN
>NC_014926.1|WP_013537378.1|568572_569115_+|NTPase
MKIALTGRPGIGKTTCVKRAVSLLSVPAVGFWTEEIRKNGRRWGFKVVRTDGKEALLASVEGRSPYKVGRYKVFVREFEAFLFPFLNSALNPTSVAVIDEIGKMELLSRRFARFVEQLILSEGPALVTIPQKDVHPLVAQIRSSGRFKVITVTLQNRDKLPEKIVNLLEGRDGEEGAEKP
>NC_014926.1|WP_157629605.1|567751_568573_+|MBL-fold-metallo-hydrolase
MSGLKLTRESLQNRLVFLGTAGARYVAFGFMRQAGGLYWNFGGYNLHVDPGPGAFVHAHRKGIEPFWTDAVLLTHRHLDHCADVNHILEAMTLGGKRKKGKLLCPSDAVNQDPVVLEYTRQNIEETILIEEKKELMLFENLKLTFPVRHVHGVETYGVIFNWNGKHFGYLTDTKFFPELLEAYSPAKDLLIINTTLYSPNPKIDHLSAKDAKEIIAFVKPTLAVLTHFGKTMLSAKPWEVAASIEKETGVKTLAAYDNMIIDLNILEVVRQRR
>NC_014926.1|WP_013537376.1|566987_567764_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MAQVHPLAVVEKGAELDEGVIVEPFAYIGPRVKVGRGTVVKKGAVIEGRVTIGENCTIYASHIGVEPQDLKYKGEDTEVIIGNGVKIREYVTIHRGTAGGGGVTKVGNNVLLMAYVHVAHDVIIGNNAIVANAVQIAGHVEIGDFAVIGGLTGIHQFVRIGKHAMVGGASAVHRDVPPFLLAQGNRARLEGVNIVGLKRRGFSREAIRTLTAAFEVIFKSDEPIQKALERALEEFGDSPEVRELVEFVRNSKRGICPA
>NC_014926.1|WP_041439399.1|566556_566988_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MDIVEIMETIPHRYPFLLVDKIVEFEPKKRIVGIKNVTMNEPFFQGHFPGHPIFPGALLVEAMAQVGCILMFKSFDISPKEYVVYFMGIDKARFRKPVRPGDTVKFVLEPTVIKSRLSKMKGEAYVGDELVCDAQIMAMITRK
>NC_014926.1|WP_013537374.1|566062_566557_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MFRVGIGYDAHRLESGYRLVLGGVEIPYHKGLKGHSDADVLVHAVCDAALGAAALGDIGEHFPDTDPKYRGISSLRLLEKVAQLLRLEGFTVVNVDTVVVAQAPKLKPYKRQMAENIARALGILPSQVSVKATTTEGMGFEGRGEGISAQAVVLIREVGGIERW
>NC_014926.1|WP_013537373.1|565342_566059_+|response-regulator
MRVVYGDDKKTWHELFDKVLSLRGIEVVHAYTPKEVINLTVEKKPDVVILDVTLSHGTAYEVIEKVKDRGVPVVVIGHRAEGFDPEKALSLGASAVLEKPFTVEELVELLRNIKTHKPQLEEKLEIVAPSAGEMVEIPVIEEPQEELQVLPVEEHVETIELEPVELQPEPVEEPVKPQSTESKVVEEAKKEIAKKVEAGLPEEKVEQIIREIAWEVIPEIAEKVIREEVEKLIKSRLA
>NC_014926.1|WP_013537372.1|564623_565346_+|hypothetical-protein
MNWELITVVVAAVFGAIGLVFGFIIAKSLGGRKKEEEERLAILEERLIGVSERTISMAEELKSKIKELREDKLKDIRQEIEALQLEIHKLKKELATLPVSLSPSSYEALEKSEEILKEIEFNLPSIDNSLLTQVKDSLLILRNDVQNLAIEAQKSKEPAVDPVFLKDLLDTVESAVSISRNINASLVKDELLALAHSIKLDDGSELTKDLDAQALNAKELVVLLEELKERIKKELEGVAR
>NC_014926.1|WP_013537371.1|564037_564604_+|septum-formation-protein-Maf
MVEKVKLALVSSSPRRREILQMAGFNFRVVKVSVEEELHPSSYKTATLNAEKKVLAAKEQLLPGEVALAADTIVVLGDEILGKPKNSQEARLYLKRLSGRWHKVITGFSLLINGRVVTDYEESLVKFKRLTPSEIEWYISTGEPLDKAGAYGIQGKGALFIERIDGDFFTVMGLPVSRIYDILTVELE
>NC_014926.1|WP_013537381.1|571984_572806_+|hypothetical-protein
MKLFSRIRVVYTKAFSSQFGPIFSDWPSIVLLFFIFLLLSLITGWIPDGLTALFEGERLKGLFMLGGSCSILLFLLVAAKYLFVNVRFYAVERTPLKRKALILFLSVPGKGGNSRELLDALRKAETIEEKLELVNGSFIRSWRMPFEAMKFHLPELRSVVVISSLESSNYYPLFLKVAKLLFPESQIQFKEIPITSFESFNQVQEAVEKAYSFLKEQGFREKEVILDVTGGKKIVSIVGALLSLQPFREFQYVSTEQGSYSVKSYDLEALKDE
>NC_014926.1|WP_013537382.1|572792_573578_-|purine-nucleoside-phosphorylase
MVEEAAKKIKELLKEEEFFAAVVGGSGIELPGVEREIPYSEIPNMPLPAVPGHKGVVKLLSLNGKKVLFFEGRFHYYEGREDWEIRFIPELCSLLGVRVFIPTCASGAVSRKAAESEIGVIYDHINLLGRNPLVGLIKSYGARVFVNGKKFYSKRLVNAFLKKALELGIDAVPAVLAANLGPNYETYTEIRLLEVLGVDCVSMSTVPEVIAANFYGMECVALTVFTNDTLNPEASHEEVLEKAAERSAKLGKLIGEALIHL
>NC_014926.1|WP_013537383.1|573580_575260_-|hypothetical-protein
MKKASLLLLIPALSASCALNPFASKEPQYTPPPVQSQEGVGIEKSKFHGVKNVVYYMKKAFSPVEGEVVLNSYDGYIIDVGREQGVSVGDRFISQSGAVLKITSVSKEYSTALPTLGKPVIGEKVQRLTFNRALFINFAGKKGLELYRELKKEVPSLNLAPYKEGEAFKEKFHLKYPSDFRRRVPVTQLTGYDGFIVVSDAGAAVYDATKKLIRLFPWEGTPVTSVTLSPGKNYKVVLDFKAHATSLFLKNLDSTPEPELLVTTENDVRVYRLIPNTLTVKKIYRFKNPLRGSYLFHTCPVTVNGQSAFVIDGFFQNSKSVRSGLFTIKQGKLVKLAESDLILSCFDENGDGVNDTVWGQKVSRISDKLFSKKVWKLKVQNGRFVKISRVNVPEGFQVTSAQLFKNHGKQFMAYYDLNYYFNVAQGTKIVWRSPIQIGASPNSLYWYSNDMMVSYYITPKPEPTDVDGDGNEEVYFSQNKNAVPGILRNIYTFDGGRILMLYYGAGGFDWEEATSPIYKLGGIEAFSYSPELDAFVAVFTSVSIFKPPRSKLLIIKPKE
>NC_014926.1|WP_013537384.1|575359_576583_+|ammonium-transporter
MAVEEGIKHLVQSLNVFYLLAGAVMILSMHAGFAFLEAGTVRRKNQVNALVKIIVDVAVATVAYYFIGYPLAHKVCFIKPASALVSDQGLELVRFFFLLMFAACISAIVSGGVAERMKFRPYVIAGFFLAGVIYPIFEALIWGERWSPAFQGWVEHIFGAPIHDFAGSMVVHGLGGIIALPAILLLGPRMGRYVRGKSKPIPVSNIPYLALGSWILIIGWFGFNVMSSQKLTDISGLVAVNSLMATAGGIIGGLLFGKNDPGFIHNGALAGLVAICAGSDIVNPVGAFVIGVVAAYIFIKFFVIFQERLKIDDVLGVVPLHGFNGIWGGIAAGIFGQKFLGGLGGVSLAAQIFGAVLMVVYALVAGFILYGSLKAVFGLRLSEEEEFNGADLSIHKITAYPEEKFRV
>NC_014926.1|WP_013537385.1|576710_577121_+|transcriptional-repressor
MDGVKQKRKRNTRQKAVVYQVVMDSHDHPTAEKVYERAKRELPTISLGTVYRVLKELASEGKIREIIVNKQSHFDRRTDFHHHFICKKCGRIEDVETPLCRYTCRKVEQKGYVVDEIEYKFYGLCSKCAQKEGISQ
>NC_014926.1|WP_013537386.1|577248_577587_+|P-II-family-nitrogen-regulator
MKKIEAIIKPFKLEEVKDALTEIGVQGLTVSEVKGFGRQKGHTELYRGAEYVVDFIPKVKIEVVVPDSIAEKVVETIVNAARTGRIGDGKVFVIPVEDAVRIRTGERGDSAI
>NC_014926.1|WP_013537387.1|577602_579021_+|type-I-glutamate--ammonia-ligase
MRPQNAKEVVELIQREGIKFVDLRFTDMFGTWHHITFPAHEISEESFEQGLFFDGSSIRQWQPINASDMMFKLDPTTATVDPLSEIPTLVVIADIVDPVTKEPYHKDPRNIAKKALEYLKSTGIGDAVYCGPEPEFFVFDDVRYDVGMNYGFYEVDSVEGIWRTGADESPNLGHKVKVKGGYFPVPPNDQLDHIRKIMALKMEEAGLVVEALHHEVATGGQCEIDFRFGTLIEAADNIQWAKYIVKNVAKMFGKTATFMPKPLFGDNGSGMHTHMSIWKNGENLFHGDSYAGLSETALYFIGGIIKHAKAVCAFTNPTVNSYKRLVPGYEAPVNLCYSARNRSAAIRVPVVTSSKAKRIEVRFPDSSGAPYLAFTALLMAGLDGIENKIHPGEPVDKNLYDLPPEELTDIPTVPGSLAEAIDALEKDYEFLTKGGVMTEQFLEDYIEYKRKEEIDPVRLRPTPMEFMLYFDV
>NC_014926.1|WP_049767033.1|579238_579721_+|class-I-SAM-dependent-methyltransferase
MGAGTGLLTLFLEPFVSQIVAVDTSAGMVEVLREKVEALGLEGKVVPYLGTVNGSFPYSGFNVAVTHMTLHHVEEPRAFLGELVRRLSPGGWLAVSDLDKEDGTFHSNNEGVFHFGFSKEEVEELFRSVGVEPVGYKVFNVIRKRGREYPVFLCVGRLKG
>NC_014926.1|WP_013537388.1|579717_580977_-|diaminopimelate-decarboxylase
MERKTLYPFIELRNGELYIEELPALEIAEKFSTPAYVYSANAFRWWFNEFNSAFSQVEHTTCFAVKANSNVWVLKLLAELGAGADTVSAGEIHRALTAGISPKKIVFAGVGKRPDEIEFALERDILMINVESESELETVNRVGEKLGKKAPIALRVNPEVDPKTHPYISTGLHEAKFGVDYERAVELYKKAKEMKWVNPVGIHFHIGSQITDTSAFGEAAEKVAELVKELHSLGIEVELFDAGGGLGVNYNPQEPPVPSEELAKQLIPAVKELGCKLILEPGRRISANAGVLLTKLLYIKRRPNKTFYIVDAGMNDLARPALYGAYHHIVPVVNKGRKTETVDVVGPICETGDILAKGRELPECSEGDILAVLSAGAYGFTMASNYNSRPRPPEILVEGSSTRVIRQRETISDLLAREF
>NC_014926.1|WP_013537389.1|580976_583448_-|DUF2800-domain-containing-protein
MSRKRLKELVEELSQKIERNENPFVVVRQFTTFFEVECLRSIQSPVFKEIGGTLQRAALKVLEENLEKRRILSDQERTLLVKRIVEEVEKAECSYGRAQLIDKRIRGILQSGTGEEELLSAAEQIEDSRLKEKLLQTVELVKRFQELQKELTGRSFLTVLKEATERLESSPLPFSSLEVAAPVFLFPLETAFLKKCPHTLYFYRAEGELQGKLQEEFLKDSVNVRELEGNSLSRALNRKPAKSETEVLIKSVYTENEHAVAAVEGVLLALERGVEPHRIAVVGDSIDRLLPVLYSLFKQFKIPFNFQTRGLPLTSTAVVKEFLHEIRESEESLPLTEWLRRLWSRSFRKSDNLEKQLLKLLREIEGLSERGLFLDRRLNGPQARKELLKLLQNRFYMTDDNDPFGVHVCSPESAVSLFPEAVIFIDLSEGSYPRAFPYDPDFSYAEREQINRLLKACGLSNQPFPSRKNLIAYDFLTFHNILSLPLKLFFATVNRRRGESLFTYLLREFAGAKEAPEFATREAVNAFRVYKGEREPETEPERGIVGWKDQGPERAFLVKGSKALRKRLKEITVSQLLSYLRCPTEAFIELFLTPDTQDSIFSAEGTLYHRLIAAGDSWEEEFDREFERLFSRLKAGEKKLEILKEALKKNFSRFIKKAGPIEGKHEEELAVTVEGTVIRGRADLIVEAEKLKIVDFKRGSVKVRVTDSEAIQLLLYAAAKSCGELESWEPQLELLELELVSVSRSYEAGWRNRLKLSKGEVEKVKKLVRTAVRGMKLGIFVPHRLTLRRGRIGLNTYCCRGFERFQLSFEELKRVEKLLRGEE

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Crispr_ID: NC_014926_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_4

1049961-1050183

Orphan

Consensus_repeat	Method
GTTTTATCTGAACAAGTGGGATTTAAACCT	PILER-CR
GTTTTATCTGAACAAGTGGGATTTAAAC	CRISPRCasFinder
GTTTTATCTGAACAAGTGGGATTTAAAC	CRT

3 spacers

The CRISPR arrays of NC_014926_4

>merge|NC_014926|4|1049961-1050183|PILER-CR,CRISPRCasFinder,CRT
GTTTTATCTGAACAAGTGGGATTTAAACCTCTTCTTTAAGAACTCCCTTACGGTCTCAAGGTCGCCGTTTTATCTGAACAAGTGGGATTTAAACGTCGTCATATAGGGAACGCAAGTTCATCTCCTCCCCCGGTTTTATCTGAACAAGTGGGATTTAAACTTGCGCTAAAACGTCGTTCCGTAGGCCCTGTTAAAGCTTTATCTGAACAAGTGGGCTCTAATC

>NC_014926|4|4|1049961-1050122|PILER-CR
GTTTTATCTGAACAAGTGGGATTTAAACCT	CTTCTTTAAGAACTCCCTTACGGTCTCAAGGTCGCC
GTTTTATCTGAACAAGTGGGATTTAAACGT	CGTCATATAGGGAACGCAAGTTCATCTCCTCCCCCG
GTTTTATCTGAACAAGTGGGATTTAAACTT

>NC_014926|4|4|1049961-1050183|CRISPRCasFinder
GTTTTATCTGAACAAGTGGGATTTAAAC	CTCTTCTTTAAGAACTCCCTTACGGTCTCAAGGTCGCC
GTTTTATCTGAACAAGTGGGATTTAAAC	GTCGTCATATAGGGAACGCAAGTTCATCTCCTCCCCCG
GTTTTATCTGAACAAGTGGGATTTAAAC	TTGCGCTAAAACGTCGTTCCGTAGGCCCTGTTAAA
GCTTTATCTGAACAAGTGGGCTCTAATC

>NC_014926|4|3|1049961-1050183|CRT
GTTTTATCTGAACAAGTGGGATTTAAAC	CTCTTCTTTAAGAACTCCCTTACGGTCTCAAGGTCGCC
GTTTTATCTGAACAAGTGGGATTTAAAC	GTCGTCATATAGGGAACGCAAGTTCATCTCCTCCCCCG
GTTTTATCTGAACAAGTGGGATTTAAAC	TTGCGCTAAAACGTCGTTCCGTAGGCCCTGTTAAA
GCTTTATCTGAACAAGTGGGCTCTAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537827.1\|1052404_1053397_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|340821
NC_014926.1\|WP_013537819.1\|1043709_1044396_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NC_014926.1\|WP_013537824.1\|1047164_1049708_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NC_014926.1\|WP_013537820.1\|1044407_1045415_+\|3-dehydroquinate-synthase-II	unknown	unknown	gnl\|CDD\|235025
NC_014926.1\|WP_157629662.1\|1058413_1059160_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841
NC_014926.1\|WP_013537817.1\|1042236_1042644_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_014926.1\|WP_013537816.1\|1040462_1042190_-\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
NC_014926.1\|WP_013537833.1\|1059187_1059463_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_083797267.1\|1050834_1052232_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309383
NC_014926.1\|WP_013537829.1\|1054664_1056557_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NC_014926.1\|WP_013537818.1\|1042640_1043720_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537822.1\|1045735_1046680_+\|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl\|CDD\|274028
NC_014926.1\|WP_013537830.1\|1056598_1057630_-\|KamA-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|163532
NC_014926.1\|WP_013537828.1\|1053447_1054644_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|376675
NC_014926.1\|WP_013537834.1\|1059515_1062125_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_014926.1\|WP_013537825.1\|1050554_1050893_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_157629661.1\|1046780_1047149_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NC_014926.1\|WP_157629659.1\|1045454_1045736_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537831.1\|1057626_1058379_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_014926.1\|WP_013537815.1\|1039879_1040386_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537819.1\|1043709_1044396_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	5.62338e-130
NC_014926.1\|WP_013537824.1\|1047164_1049708_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_014926.1\|WP_013537820.1\|1044407_1045415_+\|3-dehydroquinate-synthase-II	gnl\|CDD\|235025	PRK02290, PRK02290, 3-dehydroquinate synthase II family protein.	1.17687e-171
NC_014926.1\|WP_157629662.1\|1058413_1059160_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.04802e-47
NC_014926.1\|WP_013537817.1\|1042236_1042644_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	4.83887e-14
NC_014926.1\|WP_013537816.1\|1040462_1042190_-\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
NC_014926.1\|WP_013537827.1\|1052404_1053397_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.04781e-78
NC_014926.1\|WP_013537829.1\|1054664_1056557_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NC_014926.1\|WP_013537828.1\|1053447_1054644_+\|methionine-adenosyltransferase	gnl\|CDD\|376675	pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase (AdoMet synthetase). This family consists of several archaebacterial S-adenosylmethionine synthetase C(AdoMet synthetase or MAT) (EC 2.5.1.6). S-Adenosylmethionine (AdoMet) occupies a central role in the metabolism of all cells. The biological roles of AdoMet include acting as the primary methyl group donor, as a precursor to the polyamines, and as a progenitor of a 5'-deoxyadenosyl radical. S-Adenosylmethionine synthetase catalyzes the only known route of AdoMet biosynthesis. The synthetic process occurs in a unique reaction in which the complete triphosphate chain is displaced from ATP and a sulfonium ion formed. MATs from various organisms contain ~400-amino acid polypeptide chains.	0
NC_014926.1\|WP_013537822.1\|1045735_1046680_+\|ADP-glyceromanno-heptose-6-epimerase	gnl\|CDD\|274028	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.33228e-132
NC_014926.1\|WP_013537830.1\|1056598_1057630_-\|KamA-family-radical-SAM-protein	gnl\|CDD\|163532	TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.	1.98646e-108
NC_014926.1\|WP_013537834.1\|1059515_1062125_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_014926.1\|WP_157629661.1\|1046780_1047149_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	4.76002e-29
NC_014926.1\|WP_083797267.1\|1050834_1052232_-\|hypothetical-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	9.18411e-25
NC_014926.1\|WP_013537831.1\|1057626_1058379_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	4.75561e-06
NC_014926.1\|WP_013537815.1\|1039879_1040386_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.39126e-29

>NC_014926.1|WP_013537824.1|1047164_1049708_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MNIWDVLSGRAKDAILLSQEIAKQLGERYVDTEHLLLAMVELPGSPILDIFTLAGFDPIRAKKFIREQVDRVGRLGLPSTHYAGYEEIYITPTLKKVLDAAFDIARQMKARSVDLEHLFLGFYEVPESMAYRILLKLGLEKEDALKAVKKYREGRAKVSRDISAKAKAAGKQLPEVLRKYGIDLTGLAEEGKLDPVIDRETEIKRVIQILSRRTKNNPVLVGPAGVGKTAIVEGVAQKIANGEVPENLKDKRIVALDMAALVAGTKYRGEFEERLKQVLDAVKEEGNIILFIDELHTVVGAGAAEGSMDAANIMKPALARGEIRVIGATTTDEFRKYIEKDPALERRFAPVWVDEPDIETAILMLKGLRPKLEEHHKVKITDEAIEAAVKLSKKYIQGRYLPDKAIDVLDEACARKKLEATYSSPELAELKEKLHNLRAELDEAVKAEEFDKAAKLKKEIKEIEARIKELEEKVEKAKEKGEELPVVTAEDVAEVISEMTGIPASKLQEEEIKKLLRMEEELHKRVIGQERAIKAISEAIRRARAGLQPPNRPLGSFLFLGPTGVGKTELAKALAEYLFGDESAIIRLDMSEYMEKHAVSKLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNILLQILDDGRLTDAKGRTVDFSNTVIIMTSNVGSEYLMNLSKEEFEKNYDKIKEQIMEELKRRFRPEFLNRIDEIIIFHPLAEEEIKKIVDLLIAKLNKRLEERGIKVKLTEAAKSELAKRGYVPEFGARPLRRTIQREVETPLSVKILEGSVKEGDTVVVDYDKEKGEFTFKVEKEELPPKEAKLKTPEEEEKKEEKGDSDK
>NC_014926.1|WP_157629661.1|1046780_1047149_+|MerR-family-transcriptional-regulator
MDKDTPVYMISIVAKIAGVHPQTLRFYENEGLIRPSRTEGKTRLYSENDLIRIKRIVALTRERGVNVAGTSLILKLEDDIERLFEEMARRLNEEALKAIVEMLQELHFDELNRDKLIKILQK
>NC_014926.1|WP_013537822.1|1045735_1046680_+|ADP-glyceromanno-heptose-6-epimerase
MRAVITGGAGFIGSNLILELQKRFPDWELFVVDDFSSGNFKNLRTFNGEVITGSITEEKTIQKIEKLKPDVIFHQGAIVDTTLTDQRRMMEVNCEAFKELLEVARKSRSAVVYASSGAVYGNTEPPMVVGKGELPENVYGYSKLAMDRYARKFMKENPTVPVVGLRYFNVYGPREEHKGKMASMVLQLTVQILKGKRPRLFKWGEQKRDFVYVKDCVEANIKAFESGKSGIVNVGTGNARSFNEVVETIKKALRTDVEVEYFDNPYKFYQNFTQADLTHTKELLNWTPQTQIEEGIPEYVNWIKENVDWEELPY
>NC_014926.1|WP_157629659.1|1045454_1045736_+|hypothetical-protein
MADALGKSPEELQEYLGESQKICDIFVQRVYLDENLRDFDWGVSVIRFNGNELEEAATYATFRSWKLAKEYGNALKEFFKSKGYEAHLKGELG
>NC_014926.1|WP_013537820.1|1044407_1045415_+|3-dehydroquinate-synthase-II
MEKKELIVFIRNPENKKVVTAALESGVSALLLEKPESKKVKRLAKVKTIAPDGDYKLGEEFVIVEIKGKEDEERAAKLLKQGKKVIVKTTDWTIIPLENLLAQGDEVYAWVRNAEEAKTAITILEKGVKGVVLDTEEVNQIKEAGEAIALAGEKVELETAKIKRVKPIGMCDRVCIDTCSNMTRGEGALVGNSSAGMFLVHAETESNPYVAARPFRVNAGAVHMYVKVPGGKTKYLAEIESGDEVMIYNHKGEGRIAYVGRAKVEKRPMLLIEAETKDGKKVSAILQNAETIRLTRPDGTPISVVELKEGDEVLVYTEEPGRHFGMKVKESIVEK
>NC_014926.1|WP_013537819.1|1043709_1044396_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MGIRENVEKVLKQIEEAALRAGRRPEEVKLLAASKTRTPQEIKEAYEAGVKLFGENRVQEAREKIPQLADLKAQWHMIGHLQTNKVKYAVKLFDCIESVDREGLVEELQKRLSREGKVMPVLIEVKLSPEESKHGCLPQELPRLTEKVLNSPNLKLKGLMTVPPYFEDPEKVRPYFAELRRLRDELQEKFKVELPELSMGMSHDFPVAVEEGATIVRVGTAIFGPRNY
>NC_014926.1|WP_013537818.1|1042640_1043720_+|hypothetical-protein
MRKAILALALTAATSYAASAGSATVLTNQLSLRSYPNGELTETVESGQSLELSSLFNFWGLSEKGWFGVDYTEFSFPKLLKTGSIELKLCTLNESLGTVKEGTTGVVAGETEDYYEVAFGGKLYRVPKNSCTPFSDTFSIEVVNFKATLKGPEGNRDVPSGTALLQDSSGRFFFKGRFYNSIEFPQLKGEVDREILLKEINRIIDIFNSAKFSSPLADRLGYYVKTLPVRNEDLRIVKTPNGVGVFVKLKYRFFTKEGKPIDDRKTRLFLKRSNFIFWKNLTQELFGLGVNKFVELDIYRFNGSGGYENCGFVASSYHFYRLYGFKNWRDFIDHSESNLSEDLWFFADQVYERVEGNGD
>NC_014926.1|WP_013537817.1|1042236_1042644_+|PaaI-family-thioesterase
MDGRELRRDNYCFVCGPENPKGMHLKFEKRPDGVYARFSLPKYYQGYDGVIHGGIITLLLDEAMAYLQTYHERFLTGRLTVRFHKPLLVGEEVEVRAWIEKERGRTKVTKAVMEKTSGEKVAEAEALMFVVREKE
>NC_014926.1|WP_013537816.1|1040462_1042190_-|DNA-polymerase/3'-5'-exonuclease-PolX
MKNKELAQIFEKWADILEFMGDNPYHVRAYRNAARLINDLSEDIEVLAREGKLSQLPGIGQRLQAKILEFLRTGKIEEFEKLKQQVPDTIFTLLDIPGVGPKTVKLLYEELGIRSIEDLKRAIERGELLKLPGFGPKRVEKIKKGIELLEKSGGRILLGVAVFIADRIVNHLKEHSAVERISVCGSTRRMKETVGDIDILASGKNNLEIVEAFVNLPNVKEVLWKGPKKATVIVEEGEQVDLRVIEPDSYGAALQYFTGSKAHNIHLRTICLKMGYKLNEYGLFKGDKRIAGRTEEEIYSALGMDTPPPEIREDTGEIEAAQEHRLPKLVGYNEIRGDLHLHSTWSDGASTIEDYVKRALEMGYSYIAISDHSKSLRVAGGLTEEELLKRNYEIDKLNERLGGKITVLKGAEVDILPDGSLDYPDEILVQLDFVIAAVHSRFNQDNTERILKAINNPYVNAIAHPTGRIIGQREGYPLDIEKVIKAAAETGTALEVNSYYNRLDLRDAHCRMAVKAGVTLVINTDSHHTDHMWMMKLGVGTARRGWVEGRSVLNTRPLSELKAFVAAKRKKFGVL
>NC_014926.1|WP_013537815.1|1039879_1040386_-|Hsp20/alpha-crystallin-family-protein
MFGGFFGRRRGFGFDPFEDIFRQMEMMMAEMMRGFGREFPGFEMGFEPRIEMYETPDEIVVRAEMPGLDKDSIDVKVRGNYLIIRGVKKQEEKEEKDNVFFSETFYGEFQRVIPLPVEVKEDGIEAYYDKGILEIRLPKADAARKEVKIIVKEPEEDKGKKGKGKEEK
>NC_014926.1|WP_013537825.1|1050554_1050893_-|hypothetical-protein
MRNLREKLRESLRLYEVRSRRLTPERILNDWGIDYPINEAALFRERLEKYKGMLTAEELAVLEEADRRFLETWEKVKNVDPEVPYNKIAKAFLEDIIKLAKNSSSKQPVKTA
>NC_014926.1|WP_083797267.1|1050834_1052232_-|hypothetical-protein
MENFKPLASFPINTRRKNVPRELFKELETTTYKILILSLLFGMTHVKEKEEQKLFFDHDFDATFEEAVEFMKEKLSLKPEEFYELDAKARFRAFTVAKLTGLGAIERVKEKLLKAIEEGKTLKEWIEELGEDGILKAVGFHQSNPWYLETVFRTNISTAYNAGRFMQFARSKDKIKYLEYVAIDDGRTTPICKRLDGTKLPPDDPFWATYTPPNHFNCRSTVRAIFKGSNEAGKVRKRAPRDLPELPEGFRSSPLSSWWKLIDSMARRVVKYGLKDEILEKAKKLCQKNLSDDWCEEYKEVERYLRDAEEIVEKQQKAEKEFLKVLKEFDVEKPEESFKKLWVSERTYQNHLRDRLDEGVISGWKDYLEKTLETLALYSGVYYEVYSESWDRILYDRKRQWMVVLTEKGRIISSMKVNEKLKELFDRHIQKAKRDKQTLEIHRGKTNEELKREAEGVLKALRGKK
>NC_014926.1|WP_013537827.1|1052404_1053397_+|lipopolysaccharide-heptosyltransferase-II
MEKIVVFQTAFLGDLILTAPLLKSLKRTFPSGELHLVVRKGLETVFEGFWPVDRVIPFDKRGIWKFAQELRREKYTLAVSPHRSHRTSLILFLSGAKRRIGYDKAGFSFLYTDRVKHEFKEGLHEIDRQLRLLEPLEQEVEVTYDKEPELPVSQEEVERVKGKFSLKTPYAVLAPGSVWPTKAWLPEYYAEVANFLLKRGITPVLVGGKGDSTYCNRCFSFMEGGVNLCGRTDLKEFFAVVKGAKVVVSNDSSPVHVAVSVKTPVVEVYGPTVPAFGFFPYGRGNWVELELPCRPCGIHGGKRCPEGHFRCMKELKPEAVIEKVRELLSV
>NC_014926.1|WP_013537828.1|1053447_1054644_+|methionine-adenosyltransferase
MNVRVTPLDTQPVWEQEIEIVERKGLGHPDTICDALAEKLSAELCKFYYEKFGFVLHHNVDKNLLVGGSALPRFGGGEVTEPIEIFLSGRAIKEYKGVKIPVDEIAVESAKEWLRENIHAIDPDRHVRIHTYIRPGSVDLVDIYMRQLKEGVPLSNDTSFGVGYAPFDDLESVVFNVEKKLNSKEIKEKHPEIGEDVKVMGVRVGEKMKITIACAFVDRFVKDVEDYAQKRENVRKIALEVAKQFTNREVEVEVNTGDDLESGNVYITVTGTSAEAGDDGEVGRGNRVNGLITPYRPMSLEAAAGKNPITHVGKLYNITANEIAKGVVSEIEGIEEAYVYMVSQIGKPVNQPLAVDVKVRSQEPAQAFQGKVEEIVKEHLAQMKEIWKRLVNGEITVY
>NC_014926.1|WP_013537829.1|1054664_1056557_-|thioredoxin-domain-containing-protein
MANRLAFEKSLYLRQHADNPVNWFPFGKEAFEKAGKENKPLFISIGYSSCHWCHVMEEESFQDEEVARILNSRFVPVKVDREELPHVDRFYMEACRAMGGSCGWPLSVFATPEGEPFFIATYVPKERFKRLLLEVAELWEKKPDSVVKGAKEVVKRLASLLEGLEGELPGPSAAANCFKEIESRLDPVNGGYSPPPKFPLPHFNWFLLRYFSLGGSGRAFESAAFTLKAMRLGSVYDQIGGGFHRYSTDAAWFVPHFEKMLYDQAGLLVIYSEAYALSGYWLFKETVKELISYLERELLLSNGLFASSQDADSPEGEGRYYAFTWGELKEALTPEELEFARQLYNLSPEGNWEEGLNLLYPAEEFEVKAEKLGLSLEDLLKKKALVDSKLLSLRGKKVPPATDEKALTDWNGYLLWGLAVASRFVEPAAKERAVALATSLLERSYRDGKLYHVLYGSEPAVEALLDDYAFLIRGLLELGSATLNDDFYSAAAELADIAVKAFYRGGRLYGSSDNTFNLADPFDGAYPSGVAVMVQNLLIMSELLGLNEFKKVAENVLRSYSEAVNRYPSGVVSLVEAVLMEGGELSVVESASQEALGKLLKEFRPYRFFRLNPEVEGVKVCERGVCREIK
>NC_014926.1|WP_013537830.1|1056598_1057630_-|KamA-family-radical-SAM-protein
MRVITSLEALEGLLPLSPREREAFRAVVPVYPFSTTEYYARLAAESFAVRRMLLPSLEELNPELQNLGEPDPLREERDRKAPCLTHRYPDRVLVVTTNYCPVLCRFCMRKRNWRRPLFTISEDEVDAVLSYVRRNPQVRDVLISGGEPLLLPLELLERLLLGLKKIESVEVVRIGTRLPVVEPSAVLRSELLSLLERAQKVWVNTHFNHPDELTAEAAEAVKALLKCGVPVNNQTVLLKGVNDSVSVLERLFRGLQRIKVRPYYLFHCDPVEGVMHFSTPISLGLKLLEELQTRLSPLALPYYAVDGPGGYGKVPMLPVRFEKLGSVYRFRSFSGRYFTMPDR
>NC_014926.1|WP_013537831.1|1057626_1058379_-|hypothetical-protein
MEKGFRDIEEYFLRVEAEQRQRQSQQVQRKERRFQSRDSLVRQIKNLNEKLKGKDRKIKELYQEIGELRSQLQQLKKREEEFRKREQELKDIDRYRAKIEDLQIEISRLKGEVAQKERQIENLKAQEVPKPKVELFIEVALNALTELVEGKGGKLKVLFSKRFRKDMVKEVSVKPFLFDSFVSALSRIESTSRLLRRDSKHDIYRLRVTSPYGEYRAIYLKMEGETVKFVRFGQRDSIYQELDACGWKFE
>NC_014926.1|WP_157629662.1|1058413_1059160_+|MBL-fold-metallo-hydrolase
MTLQIENLGHSTFTVKIGSLEVLTDPFLTECAGGIKRAVPAAKRPEEVTPKVVIVSHAHYDHLDLKTVKRLKGKPVYLTPENCKKVIKREEVIELKNFESVEIEGVRFWKVPAHHNRGRNLLHPDTGVGGFVIEHGGVTVYFAGDTAFSEHLYSSIGEKFKIDVAMLPIGGFFPVFRKFHQTPEEAVKGFKILKARRLVPIHFGSWHLIPLFLRLERALERLMACSLTSGITDRVTVIQPGERVTFDI
>NC_014926.1|WP_013537833.1|1059187_1059463_+|hypothetical-protein
MRLSRLIFGIILLTITVCAAPAAEAAVQFTDRPVCSSLLTHTLCEVKTFKEERVTASESRELPVPLKTEAVFKGSPLNLNAPSRASPTPAR
>NC_014926.1|WP_013537834.1|1059515_1062125_+|preprotein-translocase-subunit-SecA
MINAILTKILGSRNERVIKKLKPIVEKINSLEKEFEKKSKEELQSLTAKWRSELQKLQTAQEQFKYMDKILPEAFAAVREAAKRTLGMRHYDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPSYLNALAGRGVHVVTVNDYLAKRDAEWMGPVYNYLGLTVGYLQNQMEPPQRKEMYARDITYGTNSEFGFDYLRDNMVFSKEEKVQRELFYAIVDEADSILIDEARTPLIISGPSEESVDVYYIADAIVRQLKKEKDFKLEEKTKTATLTDEGIRHVEEIVKKMTGMKEFNLYDPKFSDLLHAIIQSLRAHHLFKRDVDYVVKDGKVIIVDEFTGRIMPGRRWSDGLHQAVEAKEGVKIEAENQTLATITLQNYFRLYKKLAGMTGTAETEAAELKEIYGLDVVVIPTNKPVIRKDHPDLIFKTKRAKFNAVIKEIEKNYKIGRPVLVGTNSIEDSEYLSRLLKQRGIPHQVLNAKYHEKEAEIVAQAGRLGAVTIATNMAGRGTDILLGGNPEFLAKKELKERGITPEKVGEEKYQEIYQETLKKYKEITEKEKEKVKELGGLYIIGTERNESRRIDNQLRGRAGRQGDPGESRFFLSLEDNLLRLFGSDRIKKLMEMMNVPEDEPITHKMVSKALENAQRRVEEQNFQIRKRLLEYDEVYNVQRKVIYEQRNKILEGENFKEEILGFMEDVAWELVDSFAPENVLPDEWDLEGLKKTLETRFGFEFPIPTKYEELMNLEVEGAPTDREKLAKLIYDTLAEKYNELEKLVGEGQLREIERVVMLDRLDQYWREHLRALDHIKESIGWRGYGQRDPVVEFKKEAFQLFEDLISNIENGVVDSLFNYYRYAKEQVQEAQHSQDSNLQTV

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Crispr_ID: NC_014926_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_5

1166769-1168349

Orphan

Consensus_repeat	Method
GTTTAAATCCCACTTGTTCAAATAAAAC	CRISPRCasFinder
GTTTAAATCCCACTTGTTCAAATAAAAC	CRT
GTTTTATTTGAACAAGTGGGATTTAAAC	PILER-CR

24 spacers

The CRISPR arrays of NC_014926_5

>merge|NC_014926|5|1166769-1168349|CRISPRCasFinder,CRT,PILER-CR
GTTTAAATTCCACTTGAAAAGCTGATAATGTCTATACTTGTAGGAACGTTGAATCCAGATTTAAATCCCACTTGTTCAGATAAAACGTGCCCTGTTAACGGTTGGCCGAAGGTTAAGAAAGGTTTAAATCCCACTTGTTCAAATAAAACTCCTCCAGGGTTAGCCTCAGGAGCTCAGGGTCAAATTTCGTTTAAATCCCACTTGTTCAAATAAAACCGCCACAACACGGACATTTAAACTCTTCTGCTCTAAAAGTTTAAATCCCACTTGTTCAAATAAAACCTCCAAAACTCCCGGCCTGAGCCTCCCCGTATATTGCAAGTTTAAATCCCACTTGTTCAAATAAAACACTTTTCTATTGCGCTGTAAGCCTCAGCTATCACGTTGTTTAAATCCCACTTGTTCAAATAAAACTAGGTGAAAACGCCTCAATAGCAAGCTTTTATCGTTGGTTTAAATCCCACTTGTTCAAATAAAACCGAAATAATAGAGTTAGCGACAAAGATTTTCGACAGAAGTTTAAATCCCACTTGTTCAAATAAAACGGGCAAGGGCAAAGTTTGGAAAATTCAATTGCCGAGTGGTTTAAATCCCACTTGTTCAAATAAAACTGGAAGCTCAACAAGGAGCAGATGAAGGCGAAAAAACGTTTAAATCCCACTTGTTCAAATAAAACACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAACGTTTAAATCCCACTTGTTCAAATAAAACACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAACGTTTAAATCCCACTTGTTCAAATAAAACACGCCTTTCCAAACTGTTCTAATGCAGGCACGGTAGTTGTTTAAATCCCACTTGTTCAAATAAAACTTGCTCCAGCCGCAACCGTGCCGAGGGCGTAGCCAAAGTTTAAATCCCACTTGTTCAAATAAAACGCTACTGCAGACGATTGTGTCAAAATAGTTCAGCCTTGTTTAAATCCTACTTGTTCAAATAAAACTGGAGTTTCCACAGAAGTCTGCCCAGGCCTTTACTCTAAGGTTTAAATCCCACTTGTTCAAATAAAACTAACGATGAATCTCAGATTACTCAACAATCTGAGACGTTTAAATCCCACTTGTTCAAATAAAACCAACTTCAGAAGAAGGGCCTCGTTGCCCTTAAAAAAGGTTTAAATCCCACTTGTTCAAATAAAACTTTTGCTGAGGTCTTGGAAGATTTTCTTCAGCTTCAGTTTAAATCCCACTTGTTCAAATAAAACTAGCTGGGGATTCCCTACTCTCGATTTCGTTACGCTGTTTAAATCCCACTTGTTCAAATAAAACTATTCTCACCTACAACAAGGTAAACGCCATTATTGAGTTTAAATCCCACTTGTTCAAATAAAACAGAAAACCGTTTCCCTGTAGTTTGACAGTATAATAGGTTTAAATCCCACTTGTTCAAATAAAACCCGTTTCAATTCTGGGGTCAAAGTACGGAGCAAGCGGGTTTAAATCCCACTTGTTCAAATAAAACTCCTGAAGAGCCATATCTGATTACAAGAAAATGTAGTTTAAATCCCACTTGTTCAAATAAAAC

>NC_014926|5|5|1166769-1168349|CRISPRCasFinder
GTTTAAATTCCACTTGAAAAGCTGATAA	TGTCTATACTTGTAGGAACGTTGAATCCAG
ATTTAAATCCCACTTGTTCAGATAAAAC	GTGCCCTGTTAACGGTTGGCCGAAGGTTAAGAAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TCCTCCAGGGTTAGCCTCAGGAGCTCAGGGTCAAATTTC
GTTTAAATCCCACTTGTTCAAATAAAAC	CGCCACAACACGGACATTTAAACTCTTCTGCTCTAAAA
GTTTAAATCCCACTTGTTCAAATAAAAC	CTCCAAAACTCCCGGCCTGAGCCTCCCCGTATATTGCAA
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTTTTCTATTGCGCTGTAAGCCTCAGCTATCACGTT
GTTTAAATCCCACTTGTTCAAATAAAAC	TAGGTGAAAACGCCTCAATAGCAAGCTTTTATCGTTG
GTTTAAATCCCACTTGTTCAAATAAAAC	CGAAATAATAGAGTTAGCGACAAAGATTTTCGACAGAA
GTTTAAATCCCACTTGTTCAAATAAAAC	GGGCAAGGGCAAAGTTTGGAAAATTCAATTGCCGAGTG
GTTTAAATCCCACTTGTTCAAATAAAAC	TGGAAGCTCAACAAGGAGCAGATGAAGGCGAAAAAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACGCCTTTCCAAACTGTTCTAATGCAGGCACGGTAGTT
GTTTAAATCCCACTTGTTCAAATAAAAC	TTGCTCCAGCCGCAACCGTGCCGAGGGCGTAGCCAAA
GTTTAAATCCCACTTGTTCAAATAAAAC	GCTACTGCAGACGATTGTGTCAAAATAGTTCAGCCTT
GTTTAAATCCTACTTGTTCAAATAAAAC	TGGAGTTTCCACAGAAGTCTGCCCAGGCCTTTACTCTAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TAACGATGAATCTCAGATTACTCAACAATCTGAGAC
GTTTAAATCCCACTTGTTCAAATAAAAC	CAACTTCAGAAGAAGGGCCTCGTTGCCCTTAAAAAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TTTTGCTGAGGTCTTGGAAGATTTTCTTCAGCTTCA
GTTTAAATCCCACTTGTTCAAATAAAAC	TAGCTGGGGATTCCCTACTCTCGATTTCGTTACGCT
GTTTAAATCCCACTTGTTCAAATAAAAC	TATTCTCACCTACAACAAGGTAAACGCCATTATTGA
GTTTAAATCCCACTTGTTCAAATAAAAC	AGAAAACCGTTTCCCTGTAGTTTGACAGTATAATAG
GTTTAAATCCCACTTGTTCAAATAAAAC	CCGTTTCAATTCTGGGGTCAAAGTACGGAGCAAGCGG
GTTTAAATCCCACTTGTTCAAATAAAAC	TCCTGAAGAGCCATATCTGATTACAAGAAAATGTA
GTTTAAATCCCACTTGTTCAAATAAAAC

>NC_014926|5|4|1166827-1168349|CRT
ATTTAAATCCCACTTGTTCAGATAAAAC	GTGCCCTGTTAACGGTTGGCCGAAGGTTAAGAAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TCCTCCAGGGTTAGCCTCAGGAGCTCAGGGTCAAATTTC
GTTTAAATCCCACTTGTTCAAATAAAAC	CGCCACAACACGGACATTTAAACTCTTCTGCTCTAAAA
GTTTAAATCCCACTTGTTCAAATAAAAC	CTCCAAAACTCCCGGCCTGAGCCTCCCCGTATATTGCAA
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTTTTCTATTGCGCTGTAAGCCTCAGCTATCACGTT
GTTTAAATCCCACTTGTTCAAATAAAAC	TAGGTGAAAACGCCTCAATAGCAAGCTTTTATCGTTG
GTTTAAATCCCACTTGTTCAAATAAAAC	CGAAATAATAGAGTTAGCGACAAAGATTTTCGACAGAA
GTTTAAATCCCACTTGTTCAAATAAAAC	GGGCAAGGGCAAAGTTTGGAAAATTCAATTGCCGAGTG
GTTTAAATCCCACTTGTTCAAATAAAAC	TGGAAGCTCAACAAGGAGCAGATGAAGGCGAAAAAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC
GTTTAAATCCCACTTGTTCAAATAAAAC	ACGCCTTTCCAAACTGTTCTAATGCAGGCACGGTAGTT
GTTTAAATCCCACTTGTTCAAATAAAAC	TTGCTCCAGCCGCAACCGTGCCGAGGGCGTAGCCAAA
GTTTAAATCCCACTTGTTCAAATAAAAC	GCTACTGCAGACGATTGTGTCAAAATAGTTCAGCCTT
GTTTAAATCCTACTTGTTCAAATAAAAC	TGGAGTTTCCACAGAAGTCTGCCCAGGCCTTTACTCTAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TAACGATGAATCTCAGATTACTCAACAATCTGAGAC
GTTTAAATCCCACTTGTTCAAATAAAAC	CAACTTCAGAAGAAGGGCCTCGTTGCCCTTAAAAAAG
GTTTAAATCCCACTTGTTCAAATAAAAC	TTTTGCTGAGGTCTTGGAAGATTTTCTTCAGCTTCA
GTTTAAATCCCACTTGTTCAAATAAAAC	TAGCTGGGGATTCCCTACTCTCGATTTCGTTACGCT
GTTTAAATCCCACTTGTTCAAATAAAAC	TATTCTCACCTACAACAAGGTAAACGCCATTATTGA
GTTTAAATCCCACTTGTTCAAATAAAAC	AGAAAACCGTTTCCCTGTAGTTTGACAGTATAATAG
GTTTAAATCCCACTTGTTCAAATAAAAC	CCGTTTCAATTCTGGGGTCAAAGTACGGAGCAAGCGG
GTTTAAATCCCACTTGTTCAAATAAAAC	TCCTGAAGAGCCATATCTGATTACAAGAAAATGTA
GTTTAAATCCCACTTGTTCAAATAAAAC

>NC_014926|5|5|1166828-1168349|PILER-CR
TTTAAATCCCACTTGTTCAGATAAAACG	TGCCCTGTTAACGGTTGGCCGAAGGTTAAGAAAGG
TTTAAATCCCACTTGTTCAAATAAAACT	CCTCCAGGGTTAGCCTCAGGAGCTCAGGGTCAAATTTCG
TTTAAATCCCACTTGTTCAAATAAAACC	GCCACAACACGGACATTTAAACTCTTCTGCTCTAAAAG
TTTAAATCCCACTTGTTCAAATAAAACC	TCCAAAACTCCCGGCCTGAGCCTCCCCGTATATTGCAAG
TTTAAATCCCACTTGTTCAAATAAAACA	CTTTTCTATTGCGCTGTAAGCCTCAGCTATCACGTTG
TTTAAATCCCACTTGTTCAAATAAAACT	AGGTGAAAACGCCTCAATAGCAAGCTTTTATCGTTGG
TTTAAATCCCACTTGTTCAAATAAAACC	GAAATAATAGAGTTAGCGACAAAGATTTTCGACAGAAG
TTTAAATCCCACTTGTTCAAATAAAACG	GGCAAGGGCAAAGTTTGGAAAATTCAATTGCCGAGTGG
TTTAAATCCCACTTGTTCAAATAAAACT	GGAAGCTCAACAAGGAGCAGATGAAGGCGAAAAAACG
TTTAAATCCCACTTGTTCAAATAAAACA	CTACTGGGAACAGTCCAGTCAGACTGGAAGGGAACG
TTTAAATCCCACTTGTTCAAATAAAACA	CTACTGGGAACAGTCCAGTCAGACTGGAAGGGAACG
TTTAAATCCCACTTGTTCAAATAAAACA	CGCCTTTCCAAACTGTTCTAATGCAGGCACGGTAGTTG
TTTAAATCCCACTTGTTCAAATAAAACT	TGCTCCAGCCGCAACCGTGCCGAGGGCGTAGCCAAAG
TTTAAATCCCACTTGTTCAAATAAAACG	CTACTGCAGACGATTGTGTCAAAATAGTTCAGCCTTG
TTTAAATCCTACTTGTTCAAATAAAACT	GGAGTTTCCACAGAAGTCTGCCCAGGCCTTTACTCTAAGG
TTTAAATCCCACTTGTTCAAATAAAACT	AACGATGAATCTCAGATTACTCAACAATCTGAGACG
TTTAAATCCCACTTGTTCAAATAAAACC	AACTTCAGAAGAAGGGCCTCGTTGCCCTTAAAAAAGG
TTTAAATCCCACTTGTTCAAATAAAACT	TTTGCTGAGGTCTTGGAAGATTTTCTTCAGCTTCAG
TTTAAATCCCACTTGTTCAAATAAAACT	AGCTGGGGATTCCCTACTCTCGATTTCGTTACGCTG
TTTAAATCCCACTTGTTCAAATAAAACT	ATTCTCACCTACAACAAGGTAAACGCCATTATTGAG
TTTAAATCCCACTTGTTCAAATAAAACA	GAAAACCGTTTCCCTGTAGTTTGACAGTATAATAGG
TTTAAATCCCACTTGTTCAAATAAAACC	CGTTTCAATTCTGGGGTCAAAGTACGGAGCAAGCGGG
TTTAAATCCCACTTGTTCAAATAAAACT	CCTGAAGAGCCATATCTGATTACAAGAAAATGTAG
TTTAAATCCCACTTGTTCAAATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537943.1\|1177391_1178018_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537947.1\|1180333_1181251_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NC_014926.1\|WP_013537945.1\|1178864_1179530_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NC_014926.1\|WP_013537929.1\|1156345_1156543_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_014926.1\|WP_013537933.1\|1159859_1160510_-\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501
NC_014926.1\|WP_013537937.1\|1163650_1164232_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_083797284.1\|1175945_1176521_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_014926.1\|WP_157629616.1\|1160969_1161743_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319983
NC_014926.1\|WP_013537946.1\|1179477_1180356_+\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NC_014926.1\|WP_013537934.1\|1160509_1161085_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NC_014926.1\|WP_013537939.1\|1173969_1174629_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NC_014926.1\|WP_157629666.1\|1161720_1163475_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173865
NC_014926.1\|WP_013537944.1\|1178043_1178799_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_014926.1\|WP_013537930.1\|1156609_1156963_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_014926.1\|WP_013537942.1\|1176570_1177380_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_014926.1\|WP_013537940.1\|1174629_1175946_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_014926.1\|WP_013537938.1\|1164289_1166704_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NC_014926.1\|WP_013537948.1\|1181260_1181659_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537932.1\|1158102_1159863_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_014926.1\|WP_157629665.1\|1156984_1158097_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225191

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537947.1\|1180333_1181251_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	3.01914e-159
NC_014926.1\|WP_013537945.1\|1178864_1179530_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	6.51243e-89
NC_014926.1\|WP_013537929.1\|1156345_1156543_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	7.05939e-18
NC_014926.1\|WP_013537933.1\|1159859_1160510_-\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	9.2819e-22
NC_014926.1\|WP_157629666.1\|1161720_1163475_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_014926.1\|WP_083797284.1\|1175945_1176521_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	6.40951e-97
NC_014926.1\|WP_157629616.1\|1160969_1161743_+\|hypothetical-protein	gnl\|CDD\|319983	cd16325, LolA, LolA, a periplasmic chaperone. This family contains periplasmic molecular chaperone LolA which binds to outer-membrane specific lipoproteins and transports them from inner membrane to outer membrane (OM) through LolB, a lipoprotein anchored to outer membranes. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts OM-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. Studies have shown that hydrophobic surface patches large enough to accommodate acyl chains of the OM lipoproteins and the structural flexibility of LolA are important factors for its role as a periplasmic chaperone.	9.10386e-27
NC_014926.1\|WP_013537946.1\|1179477_1180356_+\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.91551e-84
NC_014926.1\|WP_013537934.1\|1160509_1161085_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	4.76039e-60
NC_014926.1\|WP_013537939.1\|1173969_1174629_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	6.01511e-101
NC_014926.1\|WP_013537944.1\|1178043_1178799_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.91558e-91
NC_014926.1\|WP_013537930.1\|1156609_1156963_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	3.06051e-56
NC_014926.1\|WP_013537942.1\|1176570_1177380_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	9.29247e-172
NC_014926.1\|WP_013537940.1\|1174629_1175946_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_014926.1\|WP_013537938.1\|1164289_1166704_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NC_014926.1\|WP_013537932.1\|1158102_1159863_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_014926.1\|WP_157629665.1\|1156984_1158097_-\|hypothetical-protein	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	5.71614e-46

>NC_014926.1|WP_013537938.1|1164289_1166704_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MAQKQDNYDASAIKVLEGLEAVRKRPGMYIGDTGVYGLHHLVFEVVDNSVDEALAGYCTEIEVTIHPDNSITVADNGRGIPVDIHPEYGKPAAEIVLTVLHAGGKFEKKAYKYSGGLHGVGVSVVNALSEWLKLEIHRDGKVYKQVYERGKPVTQFTCVGTSNKRGTIITFKPDPEIFEVTEFSWDILANRLRELAFLNKGLKITLTDERVDPPKREVFYYEGGIVEFVKKINEKKDPLFPEPIYITGEKDDILVEVALQYNSTYTEQIFSFVNNINTREGGTHVSGFRSALTRAITKFIEEHNLLPKNSKISITGDDTREGLVAVISVKVPNPQFEGQTKAKLGNSEVRPVVASVVYEKLWNYLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKLADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEIKTIITALGTGVGKNFDISKLRYNKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLYIAQPPLYRLKKGKKEMYIKSDKELESVILEFALDSVKLLDPQGNPLKEEDAKEVVKKLAKLQELIAILSKRRDPQIINLLIRAQADYRELYTREGVEGLIERLRKLLPPELKGIEFKPVESPDECAFKIIATVPLDKYLKKEVTIDENLLISDLYRQARKLKGEIRAKLGEPPYKAQKKGKELTFKTLEELYTFLIDSGREGIYIQRYKGLGEMNPEQLWETTMNPENRTLLKVTVEDAVSADEVFTVLMGDKVEPRREFIQKFAKEVRNLDV
>NC_014926.1|WP_013537937.1|1163650_1164232_+|hypothetical-protein
MEKNYWTQVVEKIDKILENEGEKAIQEVPGRGRTLYGYRPQFVIDAINRVLGAHNWGYEVLEQSVTETTGKKGEKKFLAWAKVKVWVGKPESAKVAFGGSENYTPGDALKGATTDAVQKGLSLFSIGRKAYRGELKELLPQQNGPKASEKQLKLIKQLADEVKFDLSEVNLKNLSQTGASQLIKELLSKRKAG
>NC_014926.1|WP_157629666.1|1161720_1163475_-|ABC-transporter-substrate-binding-protein
MKLALFTGAVTVSPFAAALFWPEPEGRKGGGSIGVKVDLDRARFLPGRYGGTLLDATSSDPKTFNLVLANETSSTEAVGELFEGLTDVDVKTLKPVGALAVGWEFKDGGLRWVFNLRRGVLWFDGKPFTADDVVFTYRDIYFNPKIPNSTRDSFVVDGKLPEVRKLSSFQVEFILPSPFAPLLYSLAAPVFPKHVLEEAVKSGKFMETWTVSTPPEKLIGTGPYRLVKYEPGQFLVYERNRRYWKFDQWGKRLPYVEKKVKFILPDKNTQLLKFKAGELDFYGVRGEDYPDLSRGERSGHYTIYNLGPSLSADFICFNQKRDALPEWKWKLFSDRRFRWAMSHAVDRKGIVLTVYNGLGFPVYGPVTPANRLYWDPNYPKFPYNLQRAARLLRELGLKDRNGDGWLETPDGHRVEINLLTNSNNQARVQTGAIFKYDLKRLGIKVNFQPLDFNNLVDKLLHTHDFDAVIIGLTASVDPNSGRNVWMSSGQLHMWNPGQKKPATKWEAEVDRLFEEAAKTLDFKKRVELYKRAFWIICYQQPLIYIAAPLSLVAARNRVKNYFPTVWGTYKPERIFVEPTGREGV
>NC_014926.1|WP_157629616.1|1160969_1161743_+|hypothetical-protein
MEKTDSFTLSVVGLSSFVSARLGIDFILLPLYLPPTTLITHSRKKLSFNINPCRNCYTLTAMRKSTIALTLLITIPAAAHPSETPLKELSGAESLKIEFRQKTKLPVAGDEVTLYRGVIYYKRPLKFLWEYTRGSNLRIISNGKEVETRFGDGQCQVEPLNPENALFPLLLLAENYKTFKKYYTVKEEKEGKNLQTFTVEPKFKDPFFTKITFTFFKGKLKEVKTVQADGTESTYLIDSVKKNPKLPDSLFKLPPCR
>NC_014926.1|WP_013537934.1|1160509_1161085_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRVVGGKYRGRRIKSMPKRADTKLLRPTTERVKESVFSILNNYLEGVKFLDLFAGTGAVGIEALSRGASKVVFVENDRRFCNLIRENLCSLRVPPERYEIICGDYTEALKRLAKRGEKFDFIYADPPYEKGYYTRIVNMVKNLGLLDEDGLLILEEPKKNPFIPDDERWLVEKRHYGTTTVSFLNFSEGEE
>NC_014926.1|WP_013537933.1|1159859_1160510_-|6-carboxytetrahydropterin-synthase
MFEISKVFEFSAAHSVHSQRLKPEWAGSSYPKCRRLPGHGHNYRLEVFLRAESLDSTQMVTDFGHLKWLKEFIDDCFDHKLLVGTDDPAFELLFGKLGYLENGEFKVPYGEATAVAVNRDFKVESFKVGSVALDLVKGSLNFLTFNGYTPKEESPLSDFYQRLTDGIALFCCSPTSENLAWFFYNFVNANIEPLGVICSKVAVYETPTSCAVYGEL
>NC_014926.1|WP_013537932.1|1158102_1159863_-|excinuclease-ABC-subunit-UvrC
MKEKLKEVPELPGVYLFKDSAGKVLYVGKSKNLRERLSTHLNATDPNDKSYRIVRASADFDYIVVRNEREALALEAELIKEHLPPFNVLLKDGKSYPYLVVTDEEFPTVKVVRRSFSGGGERFGPFVPPKSAYNLRELLTRLFRLRSCKELKKRDKPCLQYHIERCTAPCAGLVSKKEYRKQVERALRFLKGDVKGLISELHSEIEEAAEKLEFERAARLRDQLIAVKAVFEKSAPLFEEFKECDIFYLEERGELFTGVKLTVRGGIIYGKESFHLDPVDPWDEGLLSSVFSLGVEKLDVNTVGTMWLKAYYGEEGVPAGVKLLANFKPLGDYEVHPIPEELLPLLRRNRRAVSYSLSLKELEREFEEVFGEPLPLRVECFDISTLQGEATVASCVVWEKGQFKKDEYRRFKVKSVSGVDDYASMEEVLTRRFRRIKRGEVKEPDLVIVDGGIGQLNVALKVRDTFGLGFRVFSIAKREEVVYTDLGEVVETKRFPHLFRFFTSIRDEAHRFALSYNRKLRTDKMLHSFLSSVKGIGPKRRALIEKLYPDLSELAAVSPSELAKLGIPLKVAREVVERARELFKEV
>NC_014926.1|WP_157629665.1|1156984_1158097_-|hypothetical-protein
MNLWDWHQEGIDRGVYSLFRHNLCAGKADKVLLLTDTYKERVGELMFHYGSPLCGELLHHTYQPTGRHGLEPPESVWRAAFGPEFVQELKEKELLEKVLKKELTGDEEAEVKELLLETTAPEELPTAVIAVNRYSISHTLFRKLCTDFLSIRFASMPLFEPFMFSTSLRANWSEVERRSNAVADLLSRAVGARLVAPNGTDLTFSLEGRSGIADTGRICSPGDFGNLPAGEAFVAPVEGSGCGLLVVEYAPDRKLDSPVKLRFEGGKVVEVEGEEPFADYLRELFSREEGASNLAEFGVGTNDRAKVKTNILEAEKILGTCHVAVGDNSSFGGRVKANVHIDFLVEEPTVTLTLEGGEELTLLEEGKLKV
>NC_014926.1|WP_013537930.1|1156609_1156963_+|50S-ribosomal-protein-L20
MRVKYSPRRKRRKKLKKLTKGYFGGRSRLYRTMKIAVMKSLFYAYQHRRKRKRDFRRLWITRINAAVRPFGINYSRFIHGLKKAGIELDRKVLADIAVRDPEAFKVIVEKAKAALSA
>NC_014926.1|WP_013537929.1|1156345_1156543_+|50S-ribosomal-protein-L35
MPKIKTRRSAAKRVKVTAKGKIKHWSPGKSHILTKKSRKRKRNLRKAKYLEGAQAANYKQLIIYM
>NC_014926.1|WP_013537939.1|1173969_1174629_-|(d)CMP-kinase
MPEPTIITIDGPAGAGKSTLAKEIAKKFGYLHLDSGALYRTIGYACVQRGVDLSDEKKVLNVARSISVELQNGKVLLNGEDVTRQIRTPEAGKWASQVAQYPEVREVVVQILRKLARGKKVVVDGRDAGSYIFPEAQLKIYLTASSQERAKRRLEELKRKGFNLSYEEVLKEIVERDRKDENRPFAPLKVPEGAVIIDSTGKTLEEVLQEVEKLIKNDP
>NC_014926.1|WP_013537940.1|1174629_1175946_-|nicotinate-phosphoribosyltransferase
MNLSPLVTDLYQLTMMCAYLNSGKTGEAAFELFVRELPKNRNFLVFLGREEILKVVESLRFTPDDIDYLNSLKLFPDWFLDYLKEFEFTGTVYAFKDGELFFPYEPVVRVEAPIHQAQLLETLLMNQLHPLVLIASKAARVVAVSRGKTVVDFSLRRTHGTDAGLKVAKASYAVGFAGTSNVLAGKLYSVPVVGTVAHSFIMAFRSEKEAFRAYLETFPSHSVLIVDTYDPVRGIKRAIEVAKELGVELKGVRIDSGDLVELSKLAREILDREGFRSAKIILSGGLDEYKIDQVLSAGAPVDAFGVGTKVGTSSDAPYVDFVYKLVEVEGRPIMKTSTGKKMYPGRKQVYRDYSTWKDRLTLVTESSPGEPLLEKIVINGSPVISPLSLSRIRERFIELFSRVPAPLKNIYTQVNWLPEVSEGVLKLYKQLEEELLGG
>NC_014926.1|WP_083797284.1|1175945_1176521_-|endonuclease-III
MGQMGTDPFKILVATVLSLRTKDEVTAEAARRLFQVADTPEKLLKLSEEEIASLIYPVGFYNRKAKNLKEIARILVEHYGGQVPSDLEELLKLPGVGRKTANLVVTQGFKKPGICVDTHVHRIMNRLGFVKTKTPEETEFALREKLPKEFWIEINDLLVALGQHICRPISPKCSQCPIEHLCKKVGVKRSR
>NC_014926.1|WP_013537942.1|1176570_1177380_-|3-deoxy-8-phosphooctulonate-synthase
MIVIAGPCVIEDKGTVFEVARAVKELQSLYPEHTFIFKASFDKANRSSLDSFRGPGLERGLEVLKEVKEELGLPVTTDIHEPWQAEKVAEVADVIQIPAFLCRQTDLLVAAAGTGKTVNIKKGQFMAPWDMENAVEKVRRSGGREVWVTERGTTFGYNNLVVDFRSIPVMEEFADKVVFDATHSVQRPGGLGRASGGDRRFVPYLARAAVAVGADGLFFETHPNPDKALSDGPNMVPLNGFRELIGKLIKLKSCVGELFDGEGEDIQNR
>NC_014926.1|WP_013537943.1|1177391_1178018_-|hypothetical-protein
MSGSGKISMETIVDVALRGVAVAWKKYYEITGEWLWAAPEYYLTSKIFESLGKAGVWVTLEEDMNNNIAYSNSCRPGRYPKRLTQNKRSDLSIWWKDGTLRGIVEVKVLRSSNYKPLEKDVHRICDLLNLKRDSTVQFGMIVAYTDRCSGRTKSSKERVEEVIGNVEKLIDKVAGTKLSNPSFIKDSLIKTVRDEDSSWGALACIIKR
>NC_014926.1|WP_013537944.1|1178043_1178799_-|rRNA-pseudouridine-synthase
MRLNKFLAYAGFGARRKVEELIKQGRVEVNGQVVDSPAVEVDPKKDVVKVDGERVRLPNKFVYIAFNKPQGVLTAMERAPGDKRPIVADYFRNYPVRLFPVGRLDYNTEGLLIMTNDGELADRLAHPRYHVPKTYIAKVKGRVKPAEIERMKKGALLVDDKGKKFFIKPLDVKLLHPSKTGRNTYVQITIDQGKNRVVRRFFDRFDHGVLKLKRVAIGPVKLGDLPKGYYRELTPEEVKRLKKAAGLEEEG
>NC_014926.1|WP_013537945.1|1178864_1179530_+|deoxyribose-phosphate-aldolase
MKSNKKELLSKIDYAILKATTTAEEVLKGADATREYGFATLCVFPKFIKVARTLLPQEKVCTVVGFPLSPSPLEVKLAELYRCCEDGAGEIDVVVDLGAVKSGDWESVERELKELREAAPDRVLKLIIECCYLSDEEKRTVCMLAAENGWDFVKTSTGYGTYGATPCDVELLSECTGGLLKVKAAGGIKSLEQVEKFLKAGADRIGTSSAIEIAKELLFSR
>NC_014926.1|WP_013537946.1|1179477_1180356_+|riboflavin-biosynthesis-protein-RibF
MERAQQSKSQKSCCLVGKFSALHRGHRKLIEEAKKRCSDVKLVTVKRGEQLFSGEEREELLKELRVESVELPFEHIKELSPEEFLKLLKEMGCSVLVVGKEWRFGKGRSGTAETAKKLGRKLGIEVVTVEPVKEGESKISTSEIVKLLREGSIEEANRLLGFNYFTVGTVERGKGLGRRLGFPTLNVKVKELPLPYGVYAVNLVIEGRKLPAVANYGVRPTVERDSKPVLEVHVPKAHLPQLYGKRVRVEFLKFLRPEKRFSTVEELKNQIKLDLKKFQTVLEERVGREQEV
>NC_014926.1|WP_013537947.1|1180333_1181251_+|GTPase-Era
MEENRKFRSGYVAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPGIHKEKFELNRYMNEIAFSVVPDADIILFLIDARQGLTEADRKILQKIGEEKRKDTKVIVVINKIDGVNKEELLPLIEEIHKEFPFVDEIIPISASRGTNLDRLLELLLKYLPEGPKYYEEHMVTDQPLEQFIAEIIREKIMLLTREEVPHATTVQVVNIQPGDKNPNMLVIDADIIVEKDSQKAIIIGKGGQRLKKIGQLAREELEQLLGKRVYLRLWVKVKEDWRSRPEQLRGLGYSL
>NC_014926.1|WP_013537948.1|1181260_1181659_+|hypothetical-protein
MNRELKAFLLYAYTFIFLYIVNGIIRWLFIRGHLPFLLMVAVEAAVMAAGLFFAYKLLAEKFFGVSDLKRVVKGWLVQFSLFVVLAYLLFASLAAVVKVPSFVLFIFLNGSLLLLYFTYRFSVERFLLGGKG

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Crispr_ID: NC_014926_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_6

1211026-1212134

Orphan

Consensus_repeat	Method
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	PILER-CR
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CRISPRCasFinder
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CRT

14 spacers

The CRISPR arrays of NC_014926_6

>merge|NC_014926|6|1211026-1212134|PILER-CR,CRISPRCasFinder,CRT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACTGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTTGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACGCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTTGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACCGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATAGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACAATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGAGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACTTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCCGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACAGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTAGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACTCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGGGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACCAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCCGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACCTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAGGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACGCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCCGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAAGTTGAAATGCCCGAAAAAGTAGACGGGATTGCGACTTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAAGTTGAAATGCCCGAAAAAGTAGACGGGATTGTGACGATTGCGACGCCCAATATCCTACGTCGATTCCAAGAAAATCTGCCTCTCTTGTTGAAGTGCCCGAAGAAGTAGATGGGATTGTGATGTAAACCAGCCTTTTCATTTCTGTTCCTCCTTTTGTTTTATAAGTTCTCGAAAAAATAAGCGGGATTGCGAC

>NC_014926|6|6|1211026-1211976|PILER-CR
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	ATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGTGAC

>NC_014926|6|6|1211026-1212134|CRISPRCasFinder
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	ATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGTGAC	GATTGCGACGCCCAATATCCTACGTCGATTCCAAGAAAATCTGCCTCTCTT
GTTGAAGTGCCCGAAGAAGTAGATGGGATTGTGAT	GTAAACCAGCCTTTTCATTTCTGTTCCTCCTTTTGTT
TTATAAGTTCTCGAAAAAATAAGCGGGATTGCGAC

>NC_014926|6|5|1211026-1212062|CRT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	AGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	CTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAG
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	GCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCC
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	ATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	TTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAA
GTTGAAATGCCCGAAAAAGTAGACGGGATTGTGAC	GATTGCGACGCCCAATATCCTACGTCGATTCCAAGAAAATCTGCCTCTCTT
GTTGAAGTGCCCGAAGAAGTAGATGGGATTGTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013537982.1\|1215908_1216751_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NC_014926.1\|WP_013537973.1\|1203817_1204732_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NC_014926.1\|WP_013537977.1\|1209965_1210712_+\|DUF2155-domain-containing-protein	unknown	unknown	gnl\|CDD\|370751
NC_014926.1\|WP_013537981.1\|1214120_1215755_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_014926.1\|WP_013537979.1\|1212656_1213385_+\|chromosome-segregation-and-condensation-protein-ScpA	unknown	unknown	gnl\|CDD\|234635
NC_014926.1\|WP_013537978.1\|1212251_1212656_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NC_014926.1\|WP_013537987.1\|1218854_1219493_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_014926.1\|WP_013537986.1\|1218539_1218794_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537975.1\|1205100_1206288_-\|phosphate-porin	unknown	unknown	gnl\|CDD\|197664
NC_014926.1\|WP_013537974.1\|1204731_1205091_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537985.1\|1217776_1218556_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NC_014926.1\|WP_013537971.1\|1201736_1203383_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_014926.1\|WP_013537969.1\|1199488_1200745_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NC_014926.1\|WP_013537972.1\|1203408_1203699_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_014926.1\|WP_013537980.1\|1213353_1214145_-\|integrase	unknown	unknown	gnl\|CDD\|271177
NC_014926.1\|WP_013537970.1\|1200853_1201669_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NC_014926.1\|WP_013537976.1\|1206297_1209816_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237883
NC_014926.1\|WP_013537983.1\|1216750_1216888_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013537984.1\|1216880_1217765_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_014926.1\|WP_013537968.1\|1199031_1199484_+\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|376799

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013537973.1\|1203817_1204732_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	2.16434e-28
NC_014926.1\|WP_013537977.1\|1209965_1210712_+\|DUF2155-domain-containing-protein	gnl\|CDD\|370751	pfam09923, DUF2155, Uncharacterized protein conserved in bacteria (DUF2155). This domain, found in various hypothetical prokaryotic proteins, has no known function.	7.19293e-10
NC_014926.1\|WP_013537981.1\|1214120_1215755_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.86317e-49
NC_014926.1\|WP_013537979.1\|1212656_1213385_+\|chromosome-segregation-and-condensation-protein-ScpA	gnl\|CDD\|234635	PRK00104, scpA, segregation and condensation protein A; Reviewed.	1.89653e-54
NC_014926.1\|WP_013537978.1\|1212251_1212656_+\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.39642e-43
NC_014926.1\|WP_013537987.1\|1218854_1219493_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.20696e-70
NC_014926.1\|WP_013537975.1\|1205100_1206288_-\|phosphate-porin	gnl\|CDD\|197664	smart00338, BRLZ, basic region leucin zipper.	0.000168562
NC_014926.1\|WP_013537976.1\|1206297_1209816_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|237883	PRK14991, PRK14991, tetrathionate reductase subunit TtrA.	0
NC_014926.1\|WP_013537985.1\|1217776_1218556_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	9.60339e-110
NC_014926.1\|WP_013537971.1\|1201736_1203383_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_014926.1\|WP_013537969.1\|1199488_1200745_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_014926.1\|WP_013537972.1\|1203408_1203699_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.85078e-48
NC_014926.1\|WP_013537980.1\|1213353_1214145_-\|integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.31113e-05
NC_014926.1\|WP_013537970.1\|1200853_1201669_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	4.32981e-73
NC_014926.1\|WP_013537982.1\|1215908_1216751_-\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	2.28548e-22
NC_014926.1\|WP_013537984.1\|1216880_1217765_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.73245e-146
NC_014926.1\|WP_013537968.1\|1199031_1199484_+\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	4.87615e-88

>NC_014926.1|WP_013537977.1|1209965_1210712_+|DUF2155-domain-containing-protein
MKKKALGILALAAFSTAAVAGCGKENTSMNTQEKTQEQAQKEALKPQPLTALENNKNSQLPPGHPPINGNEKLPPGHPPINSGMSGMQMPPGHPNVGVTGGNSTLPQGHPPIHGGMGGDLMAMHSGKNLTKFDRPINIPPEVQKTWKHATIDIVDKTTGKVVKEFKVSKGQTVNYGGLEIKILYIVPHLVLDNGYTSASNEPQNPAILVEVKENGKTIYAGPIYQKFPTMYNINHPRYELILKNISKQ
>NC_014926.1|WP_013537976.1|1206297_1209816_-|molybdopterin-dependent-oxidoreductase
MERREFLKVAGLTVLVGLGVEVKGAEGKELFKPVLIFDQGKCMSCKACMAACQLEHGLNETPEINLFWIEEKELGEYPKAKLIFSQEKICKQCFEHPCVSACPFNAISVGRGGVVVIDDSKCTGCEKCVPACPFNAIVMDKGNKARKCDICFERTVKGGDVPRCVAVCPSGALVFGNLYKPSGPLAQLLKDRPEVAKALLKSHHAELVPAVERGNPYLYPETKKPKGDRIVNTVCLACNARCGLRVAVKDGKLVQVDGNPYHPYNRSGREIPYTTSLKESFKAVATTCAKPQMDNDYLYNPYRITRPLKRIGKRGEGKFKPISWEQLIREVSEGGYLFKEIGDNRYYPGIKDVLSDEPVDPADPYLGTKRNQLVWFTGRSQAGRSHFIKRWVFGAIGSKNYIAHTDICGIGFRMGNYALSDGKQVEFKADYWKAKYMLVFGSNVYSAQQPGVNTSGAIIARRIAAGELKLVLVDPRAPKAIAHAHDWLPVKPTKDGPLAMGFIRVMLENGWFDEDFLSIPSMKAAEKAGRNVFTNATHLVIVDENHPEVGRFLRVKDVEGLKGSPNEEVVIDPKSGRPVAASEVDRALLEWEGEVGGIKVKTAFKIMKESVMKHPLSFYARESGIPEEKIKKVAKEFWEHAPYSVAFAYHGGGNYVGGLYASYALAMMNALVGNINREGGYLCRGKGAASWQKGLYNLKSFPGAKKPKGVKISREKAVYEKSREFKEKGYPSKLPWFPFTKGGLSVSAISGIDQKYPYPVKVVITYFSDLIYSMPGGRRFIETLKDPDKVPLYISVDTTINETNIYADYIVPDVTYLEGHYGFLTPHAPGCWFTAVRTPVVEPLVGKTKDGRPFCLETFLIDVARHLKLPGYGERAIPGKNGKLYPLIRAEDYYLRGIANLAENAGLKEASEEEIRFVEENYPVAKFKGILSESEWKKVCTLLVRGGVFRPIEETFDSKGNFKFGIPKVHIWNERLGTSRNSLTGERNWGTLRFYPSTDYFGEPVEELDRDYPFNVITYKSALHTQSRTICYNQALVYEPDFSLKINPADAERLGLKTGDRVRVFSRSNRKGVVTTVKVTNLVRPGTVAYSHHFGHWQHGASPVYIENASSVMLGGTKVCNGNWTKVDPRRGVGVTMNRLTRRDPKMFDLPLVEPISGIPDFSSTRVKIEKV
>NC_014926.1|WP_013537975.1|1205100_1206288_-|phosphate-porin
MRKALLALSAVLIASTGAGAQEVSTQEILQKLQALEQKVQQLEKENRQLRKLLSERGYAVSPGRSTTDRLKVGGRVLFRGTYSENEGKTIWGDPANGFTVRKARLFVSGKVNDDTKFKIMIRADRGAPVELWDAHLTYSPSYLPFGVKMGLFKVPLSLSYLKSGTKLSLPERPVAVNWIAPVWRDVGVALQTKPLYGVKFTAAVINGDGWNSSKIYNQDGKYAYVFAADAKLVSNDSYGLRFRLGYEGGTDHSPKLVYTKYGAVSVKRHLIDAETELSLKDYGLTFMGGYLFDNPTDAKSSTGASVFLGNAKGYYIQVDWGTFFDPKLHLVGRYSWVDPNDNVDDSYDVDYTTFGFYYLIHGWQTALRASYTFAHERHGSGTANNLLTTEFQLLF
>NC_014926.1|WP_013537974.1|1204731_1205091_-|hypothetical-protein
MKEITAFWGIALTGVSGVYLLRPQVCKRVLSMMEDPSFVIVSAWFSVVLGALSIAFGGDGLEMGIGGVFLLTGLYRLAFPERVGGLARTFKERPYIPLMISFISFLVGLFLLKRAYGGV
>NC_014926.1|WP_013537973.1|1203817_1204732_-|transglutaminase-domain-containing-protein
MRKFLALLAAVLTAQSAFGAVYRLTETVDLKPQPDARLVELWIPVPYQNRWQKLKELKVEAPEGFILKKGEEYGNSYLYLRWEGPLKRPVRVRVTAVVERSEVSPTKRGCPVPLRYYLSDRLVPVEKFKELARQITAGKKTDLEKLRAIYNYVVTHMKYDKSGKGWGRGDAVWACDAKRGNCTDFHSLFIALCRAVGIPAVFEIGIPVNRSGLVKGYHCWVLAFPKGYVYGIDASEAAKNPRKRDYYFGHLDDHRIGMTRGRDLLLNPPQHGDRLNYMYKAYEEIDLHPVPTGVKTYFFVEKLR
>NC_014926.1|WP_013537972.1|1203408_1203699_-|co-chaperone-GroES
MKLKPLYDRVVVKKIEMEQKTAGGIILPDTAKEESQIGEVIAVGEGRLLENGEIRPLKVKEGDKVLFSKYAGNEVKIDGEELLVIREEDILAIVEE
>NC_014926.1|WP_013537971.1|1201736_1203383_-|chaperonin-GroEL
MAGKEILFSNEARQKIKAGVDKLANAVKATMGPGGRNVVLERKFGSPVVTKDGVTVAKEIELPDPVENIGAQLVKEVAQKTADKAGDGTTTATVLAQAIYGDGLKFITAGDNAIEVKRGIDEAVKVIVDEIKKIAKPVETKEQIAQVATISANYDREIGELIAEAMDKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMECVLENPYILIYGKKISNIRELLPVLEQVAREGRPLLIIAEDVEGEALATLVVNKLRGTLQVCAVKAPGFGERRKAMLQDIAVLTGGTAILEDLGIKLENVTLDMLGQADKVVVDKEHTTIIGGKGKPEEIEARIKQIKAELEKATSEYDKEKLQERLAKLAGGVAIIKVGAATEAELKEKKARVEDALHATRAAVEEGIVPGGGTALIAAAMKLDDLVKELDEKGEIDKKHGVEIVKKAVEAPLRQIADNAGYAGQVIVEKVKELIKEKGVEWGFNARKGEFENLVEAGVIDPAKVERVAIQNASSAAGLLLTTEATVTEIPEKEEKNPAGGMPEF
>NC_014926.1|WP_013537970.1|1200853_1201669_+|mechanosensitive-ion-channel
MESYISIAVGYAVKILGALAVFIIGRWVVRKLADLLEVALKKADVDETLVKFLGNAAYFLLLILVIIAALGTLGINTTSFAAIVGAVGLAVGLALQNNMSNIGAGVLILFLKPFKVGDFIEAGGVSGTVEALGIVNTTLRTPDNVRIFVPNSSITSGSIKNYSAEPIRRIDLVIGIGYDDDIKKAKEVLYEILNSDPRILKEPAPSVSVAELADSSINLNVRPWVKREDYWAVRSDLLERIKERFDAEGISIPYPQMDVHADVKLLDRKVS
>NC_014926.1|WP_013537969.1|1199488_1200745_+|serine-hydroxymethyltransferase
MKHLKAVDPEIFDALKCEFKRQNEHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCECVDIAEELAIKRCKELFGAEHVNVQPHSGSQANQAVYLATLKPGDTILSMNLSHGGHLSHGSPVNMTGKYFNVVQYGVRKDTETIDFDQVYRLAKEHKPKMIICGASAYPRVIDFDKFREIADEVGAYLLADIAHIAGLVVAGLHPSPIEACHFVTTTTHKTLRGPRGGVVMCKAEFAKEIDKAVFPGLQGGPLMHVIAAKAVAFKEAQSEEFKKYQEQIVKNAKAMAEELQRQGFRLVSGGTDNHLMLVDLTDKGITGKEAEAALGRANITVNKNTIPFDTRSPFVTSGIRIGTPAITSRGIREDEARRIAQLIAEVLKNINDEGVIERVKAEVLEICGKHPLYPDLKELYS
>NC_014926.1|WP_013537968.1|1199031_1199484_+|ribose-5-phosphate-isomerase-B
MRIALACDHGGFRLKEVIKSYLEELGIEYIDYGTFSEESVDYPDFAYKAAKGIVNGEADRGIFICGTGIGISIAANKVKGIRAALCYNVYAAEMSRHHNDANVLCLGGRVIGEELAKRIVKAWLETPFDGGRHERRIKKISEIEKNECGG
>NC_014926.1|WP_013537978.1|1212251_1212656_+|CBS-domain-containing-protein
MPVRDLIRRKVVVIEPDDTVKLAAQRMEDKMVGSLVVIEGDRPVGIITDRDLALRVIGRELPPDTPIKEVMTRDPITIREDASFFELTKTFREAAVRRLIVVDKDGKLVGLISIDDTMELLTTEFANLIAAIRG
>NC_014926.1|WP_013537979.1|1212656_1213385_+|chromosome-segregation-and-condensation-protein-ScpA
MIKVETPVFEGPFDLLLYLIRKREVSIYDIPIAEITEEFLNYIYQMQELNIPVASEFLLMAATLARIKSEYLIPREESEDPRRELVQIIEEYLKSKKAAQELEKLQEKASRLIPHDPSELIFQFQEKIKIANTAEDLKRAFEEVLRRRNEKGLRIKVGLTISSEAFKVSDKMGEIRLLMREKFLIPFSSLIEKASCKLEVITYFLAVLELAKLGEISTFTDGEEIYISKVLPVKSSPSGSFQ
>NC_014926.1|WP_013537980.1|1213353_1214145_-|integrase
MEDFLQSLIEDGYKKNTIDTYRRVLRYFFSFLSLYNYDLTDFDEDKLCGYFSVRYKTEKSFRTAMSAIQHYLKFKGIKRRLRFVPPENAEFKEFRPITDDEIKRIELALSSLRSQDLQTAMLLIVHLGLSPSEIGKLKVSSFGRFMGIPVLQENKIKRFVINPEVEERLSKIKEEKLPISPLLSTTPSTIKVTFHRIMKQLDRDYTVADFKDNYVARLLKRGLPIDLVVEYSGRSLERVSYINRVLNLQSKADVIEKSLKEKT
>NC_014926.1|WP_013537981.1|1214120_1215755_-|lytic-transglycosylase-domain-containing-protein
MRLLLLLAIFLIPLNALALPKDRAVLFLNYLKSGDFCSLKFLNSFKGTSLERLSRLLYYDSCLGRGGRFPLPSERPKGAVELFLRAEALLKNGRRKEALPLFKRVLKLTDSFDEDIALAVGASAYKSLLTPNVLRVKIWRLAARGNTDEALFYLSFLRGDRFYTYLLAYTFLKSGKRKEAVSLFKSAEEIPRRYLFLTYLSRSLPEKFSYFKRYLKEGKSRAAKRRLSVYLLDYSFRKDLGFFKKVLKTVKPFFPRLYGYYLGRYYLFTGECKRVPRRPELPFSAWRSVCLGVPFKGRGVNFYSLLLKPPKSFPFKKEEVFAPSFKDSGLKLLVERGACYAVSFIEDKTPQNALAQYRCGYYRRGIKIAALFKKRLHRYPYLLKVLYPAPEIFGGDVYALAIARQESLFNRRAYSRSGAIGYMQIMPTTGRYLARKLKVRSFKVHHLFNPNVNVKFGTYYIHSLMKRFKLFPLAAAAYNGGPGRVAKALRLYGPVNSPADLIILTDGYLPFEETRDYVKRTFVNLYYYSNLYGTGKEWRIFSSR
>NC_014926.1|WP_013537982.1|1215908_1216751_-|4Fe-4S-binding-protein
MLRVPLWKNRRLSQLLTALFANLPLYNFVTAKLYTGRLKSIPLPIMNCYACPAALYSCPIGTISHFLVINKLPLMTLGIISAVSASFGRWICGWVCPFGLLQDLLYKIPSMKFELPRPFVYLKYLMLALGVVILPFLFKEHYFCMVCPTGTLEAGIYWVAVSSMIANMAGAFFLFKLAFGSMFLYGSIFIKRPFCRYVCPLGALFSLFNKLSIVDFSVDKKGCIECNLCKKSCPVNYPIYEDPNSPACLRCLNCVRVCPVVNLRTPDFGPLFSRSSNEKG
>NC_014926.1|WP_013537983.1|1216750_1216888_-|hypothetical-protein
MLKKAIAGAVLAAALLLTLYGALKGEPQIIWSNGRILCLTCIGIK
>NC_014926.1|WP_013537984.1|1216880_1217765_-|Mrp/NBP35-family-ATP-binding-protein
MAFDEKKCEGCAHKSTCQSAQDPMDVKLTCNLSKIKHKIGILSGKGGVGKTTVATNLAAELAKRGYKVGLLDADLHGPNVAKMFGAEGQRLFADPNSQTIKPFIPLGMPNLRIVSMAFLLENPDQPVIWRGPLKHQAIKQFLAEIDWGDLDFLIVDLPPGTGDEALSVAQLIKPMDGFVIVTTPQEVSLLDTRKSISFAKMMNVPVLGIVENMSGLICPHCGKEIDLFKRGGGEKAAKELDVPFLGRIPIEPAVVEAGDKGVPIVISHPESASAKAFAEVVEKLLEELGEKVNA
>NC_014926.1|WP_013537985.1|1217776_1218556_-|inositol-monophosphatase
MEKVIDVALLAAERASEVLLDYFGRLRELKVEEKARNDFVTEADKKSEMIIIKTIQESFPQHAIVAEESGSHGSGSWQWFIDPLDGTKNFIHGLPMFCVSIGVAYKGELVAAVVKAPLLEETFVAEKGAGAFCNGVKLKVSSRPFEEALVATGFPFRGKEMLDSYLKCFKEVFLSVSGLRRCGSAALDLAYTAKGVFDGFWEMSLHPWDIAAGILLVEEAGGVVTDFEGGRSFLSSGNIVGASPNTHGELLKIVQRHLT
>NC_014926.1|WP_013537986.1|1218539_1218794_-|hypothetical-protein
MLSEEFIAAVEKAFTVKGFDLKVEFRDLETWDEAIFHTKSAISERGVDYLSYHYAFKVEFLLENGNLISIAYRPTPGDIYGEGY
>NC_014926.1|WP_013537987.1|1218854_1219493_+|response-regulator-transcription-factor
MKIALVEDDLSILNLLKRVLLSEGFSVREFSTAEAFMNAVFEYGEEFDLVILDVMLPGTDGVTACSFLRERGFSAPILMLTALSEEEEKVKGLDSGADDYLTKPFGIKELLARIRALLRRSERGFTREGEFRFTDEGVVVEGREVKLTRKEKEILKVLVENRGKAVSKEEIVAKVWKGEQVNKRVVDVHVKHLRDKLGDRIKTVWGVGYKVV

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Crispr_ID: NC_014926_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_7

1493917-1494257

Unclear

Consensus_repeat	Method
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	CRISPRCasFinder
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	CRT
GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC	PILER-CR

4 spacers

cas2,csx1,cas1

The CRISPR arrays of NC_014926_7

>merge|NC_014926|7|1493917-1494257|CRISPRCasFinder,CRT,PILER-CR
GCTGCAATCCCGTCTACTTTTTCGGGCATTTCAACATGAAGATGTGGAGGTTGAAGTATATTGGATATGATAAGTATCGGTCGCAATCCCGTCTACTTTTTCGGGCATTTCAACTATAACAACAACAATAATAATATACTGAGGGAAGATATTGTAATGTCGCAATCCCGTCTACTTTTTCGGGCATTTCAACGCAGATCGTAATTGAGATGAAACACAGTGCTGCCTCGTCGCAATCCCGTCTACTTTTTCGGGCATTTCAACATAATGCTTTCTGGGTCATTCCTACAATACGCTGTAGGAATGGTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC

>NC_014926|7|7|1493917-1494257|CRISPRCasFinder
GCTGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	ATGAAGATGTGGAGGTTGAAGTATATTGGATATGATAAGTATCG
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	TATAACAACAACAATAATAATATACTGAGGGAAGATATTGTAAT
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	GCAGATCGTAATTGAGATGAAACACAGTGCTGCCTC
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	ATAATGCTTTCTGGGTCATTCCTACAATACGCTGTAGGAATG
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC

>NC_014926|7|6|1493917-1494257|CRT
GCTGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	ATGAAGATGTGGAGGTTGAAGTATATTGGATATGATAAGTATCG
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	TATAACAACAACAATAATAATATACTGAGGGAAGATATTGTAAT
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	GCAGATCGTAATTGAGATGAAACACAGTGCTGCCTC
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	ATAATGCTTTCTGGGTCATTCCTACAATACGCTGTAGGAATG
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC

>NC_014926|7|7|1493996-1494257|PILER-CR
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	TATAACAACAACAATAATAATATACTGAGGGAAGATATTGTAAT
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	GCAGATCGTAATTGAGATGAAACACAGTGCTGCCTC
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC	ATAATGCTTTCTGGGTCATTCCTACAATACGCTGTAGGAATG
GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013538278.1\|1492358_1493177_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379534
NC_014926.1\|WP_013538276.1\|1490224_1491106_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_014926.1\|WP_041439554.1\|1488065_1488770_-\|hypothetical-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_014926.1\|WP_013538274.1\|1486749_1488042_+\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NC_014926.1\|WP_083797275.1\|1495049_1495964_-\|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|376633
NC_014926.1\|WP_013538285.1\|1497516_1498935_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NC_014926.1\|WP_013538283.1\|1496260_1496977_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_157629629.1\|1494416_1495046_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014926.1\|WP_013538288.1\|1501310_1502810_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_014926.1\|WP_013538289.1\|1502820_1503291_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538279.1\|1493173_1493440_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_014926.1\|WP_041439557.1\|1488766_1489204_-\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187791
NC_014926.1\|WP_013538286.1\|1498946_1500803_+\|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|236449
NC_014926.1\|WP_013538280.1\|1493403_1493733_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_014926.1\|WP_013538277.1\|1491095_1492301_-\|folylpolyglutamate-synthase	unknown	unknown	gnl\|CDD\|223362
NC_014926.1\|WP_013538273.1\|1485838_1486624_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NC_014926.1\|WP_041439562.1\|1495999_1496251_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_157629680.1\|1497077_1497524_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|133477
NC_014926.1\|WP_157629631.1\|1501008_1501311_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538275.1\|1489360_1490215_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224232

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013538278.1\|1492358_1493177_+\|hypothetical-protein	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	0.0024032
NC_014926.1\|WP_013538276.1\|1490224_1491106_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	7.04043e-33
NC_014926.1\|WP_041439554.1\|1488065_1488770_-\|hypothetical-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	1.58982e-10
NC_014926.1\|WP_013538274.1\|1486749_1488042_+\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	4.86667e-25
NC_014926.1\|WP_083797275.1\|1495049_1495964_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.92555e-60
NC_014926.1\|WP_013538285.1\|1497516_1498935_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NC_014926.1\|WP_157629629.1\|1494416_1495046_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.5291e-16
NC_014926.1\|WP_013538279.1\|1493173_1493440_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.17904e-24
NC_014926.1\|WP_041439557.1\|1488766_1489204_-\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|187791	cd09660, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as MJ1666 family.	1.44389e-12
NC_014926.1\|WP_013538288.1\|1501310_1502810_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NC_014926.1\|WP_013538280.1\|1493403_1493733_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.57393e-14
NC_014926.1\|WP_013538277.1\|1491095_1492301_-\|folylpolyglutamate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.85994e-86
NC_014926.1\|WP_013538273.1\|1485838_1486624_-\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	8.57097e-53
NC_014926.1\|WP_013538286.1\|1498946_1500803_+\|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha	gnl\|CDD\|236449	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.	0
NC_014926.1\|WP_157629680.1\|1497077_1497524_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|133477	cd06971, PgpA, Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism. Phosphatidylglycerophosphatase A domain represents a family of bacterial membrane-associated enzymes involved in lipid metabolism. The prototype of this CD is a putative Phosphatidylglycerophosphatase A (PGPase A) from Listeria monocytogenes. PGPase A (EC: 3.1.3.27), encoded by the gene pgpA, specifically catalyzes the formation of phosphatidylglycerol from phosphatidyl glycerophosphate (PGP). It requires Mg2+ for activity and is inhibited by sulfhydryl agents and freezing/thawing. PGPase B encoded from pgpB is not included in this family, which also acts on phosphatidic acid (PA) and lysophosphatidic acid (LPA). Aside from PGPase A and B, evidence shows that there is another PGPase existing in E. coli. Thus, PGPase A is not essential for PGPase activity in E. coli.	4.45588e-32
NC_014926.1\|WP_013538275.1\|1489360_1490215_-\|radical-SAM-protein	gnl\|CDD\|224232	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only].	3.37725e-113

>NC_014926.1|WP_013538280.1|1493403_1493733_+|CRISPR-associated-endonuclease-Cas2
MREKGRKNSTYVVIYDIFNFEEEYQGAWVSSDYRRRCRIAKELLKYGVRIQRSVFEIEISKTQIPKLKATIQKYCSKRDKIFIYLLEDKVKSRVKEKGTPFTPRDIQIL
>NC_014926.1|WP_013538279.1|1493173_1493440_+|CRISPR-associated-endonuclease-Cas2
MMYLITYDISNDKTRTKVADILEKFGKRVQFSCFEVECTEKELSELFKRIDKLINKQTDHVIAYPLTKNSLKGETAICGKREEKTPPM
>NC_014926.1|WP_013538278.1|1492358_1493177_+|hypothetical-protein
MKLFVTESGELKTGWGKLIIKTKTKGKEFPLSKLEAVILLNNLQIPQKAIEDFRKHNLLTVQVNDDLIRIITTPKLEKFKFPEPNSYKFYSMIHLKKEEALRTLLSFRSASGTRELRQQNRAFYQNILNKTLNGRAELGNRTIDQLITSEFLRYVDQFSSVNPKSPELNKFVLFITGLSRALTAYIMKGEGYTPEEEIVEKLENLLLPQRLFICAHMLNTGLIDTEELTPKGLTEAGKKIATKILLEFTYNGEYLLPVIFTIRKIVGEGKFQ
>NC_014926.1|WP_013538277.1|1491095_1492301_-|folylpolyglutamate-synthase
MVLKFEEFFANKEFIWKPGLERVRAAVEEFGGKDYPSVIVAGTNGKGSTALATAESLAWNGLKCGLFTSPHVYKFSERIRIGPREVSEQLLNEAFDSVRPLIEKFSLTYFEASLLLALEVFRRERVDCAVFEVGLGGRLDATNVLEHQVGVVTPVGFDHRDYLGDSLEAIAVEKAAVLKPGMVAVVANQQRPVLDVLKRRPVSELHLYGKHFWADGVKVEFDGTEFFYMATVPVKTSSVGFHQAVNVSVALRAAQQLSERFLGKRFIFPKELKSKLPGRFEVLRKEPLAVFDGAHNKQALDALFKLLRQLGLRGSVVYSGFRDKEQGRNLEAVARYLRWSGGSLYLFQLPFDRAVSVEELVSEARLLGIDRVSVLDSISLKELNFPVVITGSFYLGGFIER
>NC_014926.1|WP_013538276.1|1490224_1491106_-|tRNA-pseudouridine(13)-synthase-TruD
MNAKPFLWERRVPEDFIVIEDSSFPLEEKGSFYLYLLVKRNLTTKEVCKRYNLSYAGLKDKFALTAQRVSSQAFLGNFLREELAPGSWFILKFLGRVRKKVKVGQLKGNKFAVNVSGFPFRVRGAFVNYYDVQRISGNWERGREFLLQLSSSAKRKLSWTQNFLIDAYLSYLWNKSLEMFLRERFAGYYVYHEEESFFIPTELEGALEELPKFWTILGYKKKLLHSRPYYEKLLEEQGFDIQSFLDLLRMLRIKGDYRMLYVVPRNVKQTGNYLFFYLPKGSFATMYLKHIQV
>NC_014926.1|WP_013538275.1|1489360_1490215_-|radical-SAM-protein
MSLEKLEALLSPCRLCPRNCGSKRKNGETGFCKVLDRPMVSSFGPHFGEEPVLVGFGGSGTIFFTGCNLGCVFCQNYQISHLMEGEYISVSELADIMLHLQERGCHNINLVTPTHQTPQIFAAVEEAKTKGLRVPIVYNCGGYESVEVLKELKGLVDIYMPDFKTLSREFASKYLKAPNYPEVVKEALLEMHSQVGDLQVNDYGLAEKGLMVRHLVMPGWTHDSMAVLDWITENLGRNTYVNVMDQYYPFYRACDYPEICRRVTEEEFERVYAYAKRLELRLAV
>NC_014926.1|WP_041439557.1|1488766_1489204_-|CRISPR-associated-DxTHG-motif-protein
MFFSLYPIIVPDSLLDDREKELLLKGEPVTYETHVNYVKESVKGFLSAQGLEEGRIEIFVLPGKGTFPPPRGVENGVTIRVEGEATDYFYAFLFELYKFFKNNRLFSDNDEIEVMLDLAHGLNFVPVLTYRALKEFFRFLLTSER
>NC_014926.1|WP_041439554.1|1488065_1488770_-|hypothetical-protein
MKFVAYNADPVVTGVADSNINVVEEALLIPKISLERTLKDKRSFVKTNHSELRRSCRENKLEELYILYGSLAFGLPLLLAEEALSIKRFYEGLNEVLERCVSDYRRLTECTYEDGTFSVKRSGTFQDSVRVAVFAFSVLESLCSVVRLLEGEGVPYNDYLANSDKQEQKESDDKRKDRAHPDKRNFFAHAGFERNVVELKRSSTGEILLRYRPDRKKTVKKFVREEMERFALLE
>NC_014926.1|WP_013538274.1|1486749_1488042_+|carbohydrate-porin
MVRKVLAAATLAALATVPAQAQTDQEVLRELQMLKERINKLEQELREKNAKEEKVAKEVAQIKEALSRVEFSGNAVIYYQGAAAGKLNGEEVPNPSGTGLVANLELTAKVTPGGILYGRLHAGEGTGADANGIGDSLFANLNTLSDDNPGDDTFRLLELYYSQELFGGNLNLIVGKTEPFILIDTNEFANDEVSQFVGKPFVNNPMVDPEDHFAPMVGVDWKLTDTLSFQGVAQSNTESTIYWDGSSWSVKEKDPYQDAFDKPVLAAQLTYSPELNGLEGNYRLYIWNDRADLIKIGQQTDNPTQKPKTAKGVVVGISFDQWLTEKLGVFGRAAVGNSVYPDQQFYSLGFVYQGLLPSRPKDLFAFGAAAALPNREAEYKSPEWHFETYYKIRLTDSLSITPDFQVVLNPAGNSNNDPIYAGTVKAELSF
>NC_014926.1|WP_013538273.1|1485838_1486624_-|DUF4198-domain-containing-protein
MRRAILALTMTVALGGSAQAHFMVLKPSTDIVEGSNAKTIRVEARFTHPMEGGPNMPFKPVKSGIVVNGRKLPVHWQKHEIPAMPGSSKMVPYYTADVKLRMPGVYQFYLVPDYYFEPAEQKFIRQITKVEVEAYGMEEGWNKPIGLKAEIVPVTRPFGLWEGNTFVGRVYFNGKPAANVRVEVEYLNTQGIKVPADPFITQVVRTDKDGYFYYTIPWAGWWGFSAIGYGGKRRYKDGKVYPVELDAVMWVKAYPKPNGVK
>NC_014926.1|WP_157629629.1|1494416_1495046_-|CRISPR-associated-endonuclease-Cas2
MYVVVYDIRDNKTRLRVANILEKYGERVQYSCFEIGNYSQEIIKKLALILSVRINYDTDRVFFYPISNYCRSYILRFPRKFGEIYEDLMDWKEELGRLTRRKFFYFLRDTLEMEIKSGKFSKYLLVYDISDNLIRIKFSDILEEFSERVQLSAFEVPASPNVIARIAVLAMQFAEIDDNLKVYLYPIDKGSEKKIIRIGSSYLSFRDIL
>NC_014926.1|WP_083797275.1|1495049_1495964_-|CRISPR-associated-endonuclease-Cas1
MTIEGDLKRPIVVASYGAEVSKRANRLLVSVNGRNKPVPLGVIELLILFPGVSITSSAIRFLSHHNRPVIFVNGFGKVVSVSLPEHFGSSTVNLRAAQYRLFPEEAFANALIRELLLKKCNQLKEVIPDISEKITEVEEKIPVADTLNTLLGLDGTLGKLMYGYYSQKDLGEFSFKSREYYPPPDPVNAVLSLAFSYFYNLITANVIGSGFDPYMGFFHRRRGTHASLASDVIEIVRPKIANFVFELFETKIFKKEDFEQTIRGITLREDKLKFLLLLLTEFQRKKKVLNTANSFIKKLKEKLV
>NC_014926.1|WP_041439562.1|1495999_1496251_-|hypothetical-protein
MLYASISGANGTTGSYSFSVGERLYSDQVFQPVEPANEEINESSGSSGGGCSFSNTTKTNFAVNMLIMVLPLGFLLLRRKKLA
>NC_014926.1|WP_013538283.1|1496260_1496977_-|hypothetical-protein
MRGSGLYLILLLSVVLLATGCRAVTSADFGCSRSFSVVFNRGGPNNLLGREVFYFSSSGFVQHYVEDGKRYGYIDSLSQGKLAFDYSRVEERLIVLMGKGKKITNSSKKEKVEVDFVNPTTCVYFLNRGRVVKEACVSGINGEIYRYLSRLTRSAPRVKGSKGRLWLEFVPVDTGPAHISLTKDELRRSPLLWKAFNCPFRLVEVSGELNLPGFWCEAPCSQVLRVEDGYYVLNFEKI
>NC_014926.1|WP_157629680.1|1497077_1497524_+|phosphatidylglycerophosphatase-A
MELIATALYTGKLPKMPGTWGSIFATLLVYFFWPQSLKLQLFIVAITFLLSVISSDYLSKELNSKDPDQVVIDEVLGIFITFLGVKAQHNPAAALAGLIIFRAVDIMKPPPITWFEKLPGGWGITADDAIAGVVSNLLLRIVGGFLHV
>NC_014926.1|WP_013538285.1|1497516_1498935_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFKKVLIANRGEVATRVIRACKELGIKTVAIYSEADVNSLHVKKADEAYLIHGDPVKAYLNYYKIVDIAKRAGAEAIHPGYGFLSERADFAEYARKKGIEFIGPSVEHLRIFGSKIESKKLMKELGVPVAEGSEKPINDLQEAKEIAKKIGYPVMIKAAHGGGGRGLRVARNEKELETQFQIAVKEAEAAFGKGEVFIEKYIENPRHIEIQIVADKHGNVVHLGERDCSLQRRHQKVLEIAPSPVLTRRQREKLGKICVEAARKIGYYGVGTWEFLMDKYGNFYFMEVNPRLQVEHTITEEVTGIDIVQEQIRIAAGMGLSFSQRNVQLRGFAMQFRINAEDPSKDFVPVPGTITAYYSPGGIGVRIDGVVYKGYTIPPYYDSMVAKLIVWGRNWDEVIRRSRRALGEFVIRGVPTTIPFFKKILNDPEFVKGQFDTSFIDKKIKEFTFIQETDPEVLALAISAAIAAHHGL
>NC_014926.1|WP_013538286.1|1498946_1500803_+|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha
MGRKIEFTDVSLRDAHQSLFATRMKTKDMVEIAPVIDKAGFWSVEMWGGATFDVCLRFLREDPWERLKVLRKLMPNSRLQMLLRGQNLVGYRHYPDDVVRAFVRKAAENGIDVFRIFDALNDLRNVEVAVETAKEMGKIVEGALSYTISPVHTEDLYIELALEFKEMGADIITIKDMAGLLSPERAYSLVKALKEEVGLPVHVHTHCTSGMAEMAQLKAIEAGADIIDVASSPLASDTSHPAVETMAYTLGEFGYEIGFDKEALKKMAQHFKEVRKKYKKYDIDFKGIDAAVLEHQIPGGMISNLINQLKEQGALDKLEEVLKEVPRVREDFGYPPLVTPTSQIVGTQAVLNVLAGERYKMITQETKNYVKGLYGRPPAPIKEEIIKKVLGDEEPITCRPADLLQPELGKCREEIKDLARSEEDVLSYCLFPKVAREFFEWREKVEKGEIPAISEEDLQDMEEEERKCPQPLAPTEFIVNVHGESYHVKIAGVGHKKEGKKPYFIKIDGRLEEVVVEPLVEVVPTGEEVEIAGELTSASKRPRATKEGDVTSPMPAKVVEIKVKEGDRVQEGDVVAIVEAMKMQNEVHAPISGVVKAIYVKPGDNVNPDEALMTIEPE
>NC_014926.1|WP_157629631.1|1501008_1501311_+|hypothetical-protein
MFPYLPGIGAETGWKRFDRSSTYFKPFVTVENPKDKLVVFITPSGKVYKGRCRKRKAKNRCRVFPGKRFYSPDEAIYYLVVRINPPNPPEVLESGVIGEY
>NC_014926.1|WP_013538288.1|1501310_1502810_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MVSKVKSFSTYGVDAIEITVEVDSSKGLPGIIIVGLPDSAVKESKERVRSAITNSGFRFPGKKFTVNLAPAGVRKEGTNLDLPIALGILASLGVVKGEKLNSYLIAGELGLSGELHPVRGTLSAAVLAKEKGLKGVIVPPENASEAALIEGIEAIPVKSLKEAVEFLNGELHSPPVKHSPPEYTANYGVDMAEVVGQLQAKRALEIAAAGKHNVYMVGPPGSGKTMLARRLPTIMPQMSQEEIIETSKIYSVAGLIHQVPVVQRPFRSPHSSASEASIIGGGSSVKPGEVSLAHNGVLFLDELPEFKKSVIEALRQPLEDRIVTVSRASGSFTFPADFLLVAASNPCPCGYYGFSDGVHYCKCTPLQVKRYRSKVSGPIMDRIDLQVTVPAVKPEEFKGDKGESSAKIKERVLKAREIQKKRFKGSKISFNGQMGRKEVKKFCKLTPEAEELLNHAVSTLGLSARAYNRVLKVSRTIADLEGSDKILPHHVAEALSYRE
>NC_014926.1|WP_013538289.1|1502820_1503291_+|hypothetical-protein
MKANNLQTVAEEKFREWLDKMNYPYLYIEQSINTFSKFFKGTSKRPDFLIIVKNFGIIAVDVKEKKPYGAKLSFTLDEKNEVEKYIEFERLTRLPVWFVFCAKGNYDTWYWIPLSRVLSCKQETNNSDGSKFRVIEHSDCIIIQPNKNDGISRLIE

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Crispr_ID: NC_014926_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_8

1539364-1539979

Orphan

Consensus_repeat	Method
GTTTTATCTGAACAAGTGGGATTTAAAC	PILER-CR
GTTTAAATCCCACTTGTTCAGATAAAAC	CRISPRCasFinder
GTTTAAATCCCACTTGTTCAGATAAAAC	CRT

9 spacers

The CRISPR arrays of NC_014926_8

>merge|NC_014926|8|1539364-1539979|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATCCCACTTGTTCAGATAAAACTAGATATTGGGGGTAAGCAAATTCAAATAAATCAATGGTTTAAATCCCACTTGTTCAGATAAAACCACGAAGAGGAGATGAGATATTTCCACATCTACTACAGTTTAAATCCCACTTGTTCAGATAAAACTTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAGGTTTAAATCCCACTTGTTCAGATAAAACTTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGGGTTTAAATCCCACTTGTTCAGATAAAACTTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTGGTTTAAATCCCACTTGTTCAGATAAAACCGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGACGTTTAAATCCCACTTGTTCAGATAAAACGGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAGGTTTAAATCCCACTTGTTCAGATAAAACGATTACGAATACGAGGTTACCACCGCCACCTTTGAGGGTTTAAATCCCACTTGTTCAGATAAAACGAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAGGTTTAAATCCCACTTGTTCAGATAAAAC

>NC_014926|8|8|1539364-1539979|PILER-CR
GTTTAAATCCCACTTGTTCAGATAAAAC	TAGATATTGGGGGTAAGCAAATTCAAATAAATCAATG
GTTTAAATCCCACTTGTTCAGATAAAAC	CACGAAGAGGAGATGAGATATTTCCACATCTACTACA
GTTTAAATCCCACTTGTTCAGATAAAAC	TTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTG
GTTTAAATCCCACTTGTTCAGATAAAAC	CGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGAC
GTTTAAATCCCACTTGTTCAGATAAAAC	GGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAG
GTTTAAATCCCACTTGTTCAGATAAAAC	GATTACGAATACGAGGTTACCACCGCCACCTTTGAGG
GTTTAAATCCCACTTGTTCAGATAAAAC	GAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAG
GTTTAAATCCCACTTGTTCAGATAAAAC

>NC_014926|8|8|1539364-1539979|CRISPRCasFinder
GTTTAAATCCCACTTGTTCAGATAAAAC	TAGATATTGGGGGTAAGCAAATTCAAATAAATCAATG
GTTTAAATCCCACTTGTTCAGATAAAAC	CACGAAGAGGAGATGAGATATTTCCACATCTACTACA
GTTTAAATCCCACTTGTTCAGATAAAAC	TTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTG
GTTTAAATCCCACTTGTTCAGATAAAAC	CGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGAC
GTTTAAATCCCACTTGTTCAGATAAAAC	GGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAG
GTTTAAATCCCACTTGTTCAGATAAAAC	GATTACGAATACGAGGTTACCACCGCCACCTTTGAGG
GTTTAAATCCCACTTGTTCAGATAAAAC	GAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAG
GTTTAAATCCCACTTGTTCAGATAAAAC

>NC_014926|8|7|1539364-1539979|CRT
GTTTAAATCCCACTTGTTCAGATAAAAC	TAGATATTGGGGGTAAGCAAATTCAAATAAATCAATG
GTTTAAATCCCACTTGTTCAGATAAAAC	CACGAAGAGGAGATGAGATATTTCCACATCTACTACA
GTTTAAATCCCACTTGTTCAGATAAAAC	TTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGG
GTTTAAATCCCACTTGTTCAGATAAAAC	TTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTG
GTTTAAATCCCACTTGTTCAGATAAAAC	CGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGAC
GTTTAAATCCCACTTGTTCAGATAAAAC	GGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAG
GTTTAAATCCCACTTGTTCAGATAAAAC	GATTACGAATACGAGGTTACCACCGCCACCTTTGAGG
GTTTAAATCCCACTTGTTCAGATAAAAC	GAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAG
GTTTAAATCCCACTTGTTCAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013538316.1\|1533972_1535139_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|376466
NC_014926.1\|WP_013538327.1\|1551197_1551623_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NC_014926.1\|WP_013538317.1\|1535104_1535632_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319806
NC_014926.1\|WP_013538328.1\|1551639_1552380_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NC_014926.1\|WP_013538315.1\|1533332_1533983_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225968
NC_014926.1\|WP_013538325.1\|1549700_1550240_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NC_014926.1\|WP_013538329.1\|1552399_1552582_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|376355
NC_014926.1\|WP_157629683.1\|1531323_1532658_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|237857
NC_014926.1\|WP_041439574.1\|1535943_1536765_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_014926.1\|WP_013537014.1\|1552964_1554161_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NC_014926.1\|WP_013538318.1\|1535699_1535918_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538326.1\|1550418_1551141_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NC_014926.1\|WP_013538321.1\|1537652_1539299_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NC_014926.1\|WP_013538312.1\|1530839_1531358_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224847
NC_014926.1\|WP_013538314.1\|1532659_1533301_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225968
NC_014926.1\|WP_041440093.1\|1549277_1549655_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NC_014926.1\|WP_157629684.1\|1540283_1544741_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NC_014926.1\|WP_013538323.1\|1544812_1549162_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NC_014926.1\|WP_013538330.1\|1552750_1552915_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NC_014926.1\|WP_013538320.1\|1536814_1537558_-\|carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|239398

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_013538323.1\|1544812_1549162_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NC_014926.1\|WP_013538327.1\|1551197_1551623_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	2.56278e-90
NC_014926.1\|WP_013538317.1\|1535104_1535632_-\|HAD-family-hydrolase	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.03758e-69
NC_014926.1\|WP_013538328.1\|1551639_1552380_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	7.07989e-42
NC_014926.1\|WP_013538315.1\|1533332_1533983_+\|HDOD-domain-containing-protein	gnl\|CDD\|225968	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms].	8.52772e-25
NC_014926.1\|WP_013538325.1\|1549700_1550240_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.4852e-60
NC_014926.1\|WP_013538329.1\|1552399_1552582_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|376355	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex. SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.	1.29218e-13
NC_014926.1\|WP_157629683.1\|1531323_1532658_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	1.76882e-130
NC_014926.1\|WP_041439574.1\|1535943_1536765_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.98051e-47
NC_014926.1\|WP_013537014.1\|1552964_1554161_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NC_014926.1\|WP_013538316.1\|1533972_1535139_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|376466	pfam01142, TruD, tRNA pseudouridine synthase D (TruD). TruD is responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs. The structure of TruD reveals an overall V-shaped molecule which contains an RNA-binding cleft.	1.69542e-73
NC_014926.1\|WP_013538326.1\|1550418_1551141_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.0915e-139
NC_014926.1\|WP_013538321.1\|1537652_1539299_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NC_014926.1\|WP_013538312.1\|1530839_1531358_+\|AAA-family-ATPase	gnl\|CDD\|224847	COG1936, COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism].	2.70689e-44
NC_014926.1\|WP_013538314.1\|1532659_1533301_+\|HDOD-domain-containing-protein	gnl\|CDD\|225968	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms].	3.27741e-20
NC_014926.1\|WP_041440093.1\|1549277_1549655_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	5.50878e-51
NC_014926.1\|WP_157629684.1\|1540283_1544741_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NC_014926.1\|WP_013538330.1\|1552750_1552915_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	1.23206e-22
NC_014926.1\|WP_013538320.1\|1536814_1537558_-\|carbonic-anhydrase-family-protein	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	7.01857e-120

>NC_014926.1|WP_013538321.1|1537652_1539299_+|adenine-deaminase
MEVGRWKVKTVIEGKVYDPLNGKVFNGRITVEKGKIKRVEPGGTGREIITPPFIDSHVHIESSLLTPAQFAAALAPFGVISAVADPHEIANVLGTEGVKFMVENGKSVPVKLFFAAPSCVPASPLSKAGAVLGVKEVEELLKLKEVKSLGEVMNFPGVINREEKVMAKIEAAKRVKKPIDGHAPGLKGEEARKYFEAGISTDHESTTLEEAEEKIKLGVYIQIREGSAARNFRKLFPLIEKYPEKVMLCTDDRSPDDLTSGTINRLVETAIEEGISPLKALRAASVNPIIHYKLPVGLLRPGDPADFLILESLKPLTVKSVYCNGRKIAHNGTPLFVPPAISQTLNNFQAEKITEEEIRITALREFVKTIIATDGELITDKACLKARKIKNNLCSDTDNDVLKLVVVNRYGEKRIGVGFIKGFNLKRGALAMSIAHDHHNIIALGASDREIVQAVNRVIEVGGGISLHAGNRNITIPLPIAGLMSNSNVKSLAAKVTEIKTELQNLGCRLKNPLITLSFMALEVIPKLKLTDKGLFDSERFELTFLYC
>NC_014926.1|WP_013538320.1|1536814_1537558_-|carbonic-anhydrase-family-protein
MKRVLVTLGAVAALATGAVAGGGAHWGYSGSIGPEHWGDLSPEYLMCKIGKNQSPIDINSADAVKACLAPVSVYYVSDAKYVVNNGHTIKVVMGGRGYVVVDGKRFYLKQFHFHAPSEHTVNGKHYPFEAHFVHLDKNGNITVLGVFFKVGKENPELEKVWRVMPEEPGQKRHLTARIDPEKLLPENRDYYRYSGSLTTPPCSEGVRWIVFKEPVEMSREQLEKFRKVMGFDNNRPVQPLNARKVMK
>NC_014926.1|WP_041439574.1|1535943_1536765_-|M23-family-metallopeptidase
MLRVLFLLLFLASAAAAKTSASLYLPYRYPGSLGYFKVNPKSPYKVVVSGAGRSWVFKGVEGSSKVYFVVPYGLKGRFKLSLYRGRREVFSRILRVSPKRFRVSRIWVKTRPLKGALLRRVIRENRLLRRIFSQVTPKKFRSSKLHPPLPRLVVSTPFGAKRIINRKKRSIHWGTDFRAKRGTPVYAALSGRVVLARKLYFTGNTVVIDHGLGIHTLYAHLSRITVKEGQFVKRGQVVGRVGSTGRSTGPHLHFGFYVDDVKADPMLVLKEQL
>NC_014926.1|WP_013538318.1|1535699_1535918_+|hypothetical-protein
MNFGDLRKLAGALGGGSELNAETVLKLLKGLLNQPEKGKEIVGTVEQETSADSNPLEVVMKLYSYAKKAGIL
>NC_014926.1|WP_013538317.1|1535104_1535632_-|HAD-family-hydrolase
MRRAVFLDRDNTLIYDPGFIHEPEKVRLLEGVVEGLKLLKEAGFLPVVISNQSGIGRGYFTEREFWAVNARLNKLLAPHGVQIEDFFFCPHRPDENCDCRKPSPRLVFEAARKWGIDISESFVIGDRDSDLMLAFNAGCRGGLIVGREPFKTFLDAARFIVGGGDEALLSDKDKA
>NC_014926.1|WP_013538316.1|1533972_1535139_-|tRNA-pseudouridine(13)-synthase-TruD
MKLYSRIKTRPEDFVVEELPTLKPGNEGKFWLLKLKKRNTSTLEALRVISRFKKIPLKKIGFAGLKDRFAVTVQYLTVPVEFEVGNWCFEFRNGRWVEVEAFDFTGMGFCVEPLGRVNRPLTLGDLKGNRFTVVIRNFEKNLRERFYRNYEVVKRYGFPNYFGEQRFGSVKSRDDFVLRYLLRGDFDGALRSYFFGKSSIDFWGDWRKLYKTLSPTLEEYEKDLIRGLMRGLTAEKAFRILPKNVRLMFNFAYQSFLWNEVLREYVEAKYPFVRVPFINNWKLSYYLEVHDIDYLKELQIPYTGKEYPPEDPVLKKAMSRVFRRYGVKEEWFDAQVGGMAVMTDGLRRAVVFPEGFKVLEKTKRSVKLTFTLPSGSYATILLRFLLKV
>NC_014926.1|WP_013538315.1|1533332_1533983_+|HDOD-domain-containing-protein
MSSIEKLELKREVLLKLIKALLEGEELDEIAKIISMDPNLSAKLLKFINSPYFGLKKEIKSIVQAIAYLGYRNLKDYVFLLLTSSMLKNANKDEIKRTLKLAYLMRELAKRLMPEHDDEAYMVGILEQVREEIGEEIREILEKAGVSEYVVNGLLNPESKLGKLKEAAKRLLEECDRLNEGAEVELPPELSLLSREELIESCLVAEDSAQSILATL
>NC_014926.1|WP_013538314.1|1532659_1533301_+|HDOD-domain-containing-protein
MKEPKISRTVLLRLIKALMEEEELSTVAEIASADPNLAAKLLQFANSAYAGLKRRISSIKDAIAFIGLKKLKEIAVTLLATSLLTEKDPTKLKELLRTAYIMKMAAKRQVPSLAEEAFMVGILYPVYREMGQELLNMLKEACVSEEVVEGLTNPHSPLGILLKFALAFNPYCRKIIEGEEKEFPLLVGGFKKEFLVKVCFDADIEAEKVVQLL
>NC_014926.1|WP_157629683.1|1531323_1532658_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MTGWKQREIAVKVLNAFERDKKLREHLEALTAALTPQERAFLRELVNGTVRFLRLLDFSVERASGRRLASQKPTVRNALRLLAYQLFFTGVPPYAALNETVEVVKQRLGKGAAGFVNAVGKKLLNFNYREEVESIKDPLERLATLHSFETWMVKRWESFYGPRELPHLLEGLNKVAPLFIRVNLIKTQPQELLNLLKSAGVEAEPHPFLKEMIRIKGRVNLPELPGFKEGLFYIQDPASYLAAYLLQPKPGELILDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLKENLRKLGVENTEVVITDIARDPNFLNRFRGKFDRILIDAPCSATGVIRRHPEGKWNKSLSLIKHNQTIQRSLLKAAKELLKPTGTLLYSVCSLEREEGEENSAFARRLGYTPLPLTGLPEYLKEREQEGSLRLFPHKDNADGFYYQKLTLRG
>NC_014926.1|WP_013538312.1|1530839_1531358_+|AAA-family-ATPase
MRITITGTPGTGKSTVAKLLAERLKLPLFELSRLVREEKLYSELDDERNALVVDPEKLKSYFENRNAFIAEGLVAHLIPADLLVILRASPETVRKRLAPRNYPPAKVEENVEAERFAVIATEALENPLAERVIHIDTTNRIPEQVAELIERAVKGEEIFEDVDWLETEGNSG
>NC_014926.1|WP_157629684.1|1540283_1544741_-|DNA-directed-RNA-polymerase-subunit-beta'
MVFSQEPKTFEFDAIEIGLASPEKIREWSHGEVKLPETLNYRTLKPEKDGLFCARIFGPVRDWECLCGKYRGSKYAGVVCDRCGVEVTLSKERRRRFGHIELAAPCTHIWYVKSVPSKIGALLGLSVREVERVVYFESYIVLDPNEYDGEEVELSGGKKIKLEQFTLLTEDEYQEVKEQLGEDAIEVGIGAAGIKEALKRVDLEELAKELRDEIRMYSGEISSINADLQKKLPNVFKAAVETLSHYTGLDEDTIIGIVKNVLVVVTDPGDSGLEKGAIIEYAQYKELQDKVNLEVAKGGKALEWYVEFLAEQGKIPSKELVKEEIRRATRKDTTEAKLKKLVRRLKIVESFLNSDNKPEWMVLEVLPVLPPELRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIVRNEKRMLQEAVDTLIDNGRRGRPVKSSKGHPLKSLSDVLRGKQGRFRQNLLGKRVDYSGRAVIVVGPELKMHQCGLPKIMALELFKPFIYRRLEEKGYANTMKQAKKMVERQEPEVWECLEEVIKEHPVLLNRAPTLHRVSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHVPLSLEAQLEAYTLMLSTQNILSPAHGKPLTVPSQDMVLGLYYMTLDKPGAKGEGKAFSSFDEVLKALDLGEIELHARIKVKVPAHKSDSGKEEVVETTAGRVKFNTLLPEEYPFVNKVMTKKAVAALISDVHKKLGNEVTVDMLDRLKEAGFLQATLGGLSIGVCDLHIPPTKKELIEKAKKEIAEIEEGYRKGLLSKDERYNKIVDIWTRVTEQITKDMMEYMKTHDIGGRGRLTNDGRFNPVFMMLSSGARGSQTQIRQLAGMRGLMAKPSGEIIETPIISNFREGLTVLEYFISTHGARKGLADTALKTADAGYLTRRLADVAQDVIVTMEDCGCEDGIEVSALIEAGEVVIPLAKRIAGRFAAEDIVDPVTGEVLVKKDQEITEEVAQRIEDLGIEKVKVRSILTCRAPFGVCAKCYGRDLARQRTVQLGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAMRGAEASEYRAKHDGVVKIFDVNTITDKEGRKIVINRAGKIAVVDEKTGKHLERYDIPYAAVLRVNDGDKVTKGQILAEWDPHALPILALRSGIVKYKDIIPGVTISENEPVILEYRTLPYEPTIELVDEEGNVIDFYPLPVGARIAVKEGEKVEVGAVLARIPRRIGGTKDITGGLPRVAELFEARRPKDTAILAEISGQVTVTTEKNKIIITIVDPETNVKREYEVPKGKYIYVRTGDFVKAGEPLTDGQLNPHDILNILGERAVARFLLDEIQSVYRAQGVDINDKHFEVIIRKMLSKVKIEDSGDSNFLVEEVVDREEFERVREKLFKEGKRPPKARPVLTGITKAALSTDSFISAASFQETTRVLSEAAIAGKRDYLRGLKENVIIGRLIPAGTGRKEYRKVTWEYCPEYEGAEKGEEAEAEG
>NC_014926.1|WP_013538323.1|1544812_1549162_-|DNA-directed-RNA-polymerase-subunit-beta
MGKLQKTAPTYEKEKVTSLPRKSFAKRKETYPIPDLLQFQFESYERFIQLNKAPHERENVGLESAFRQAFPIIDETTGVEIHYKGYEIGDWYCKCGKFQGLGGKGVVCPKCGMEVVFRPRYTPDECKERGIDYSAPLRVLFELHVWQKDPKTGEKIAPVIKENKMYFGEIPLMTERGTFIINGTEKVVVSQLHRSPGLFFKNEISKTTQVARVIDIASIIPAMGSWLEFEIPYNDILYAKIDRKRRFIGTYLLRAFGLRTDEEILKVFYGDVIETLKVVNGELVDAETGEVKKPEELNDYYLVSDVVDPETGEVIQEAYEELSTSSRKLPEGAEFKVINKKKTPYGAVIVNTLRKEKRDRVREKIEDPLIAAYVEIFRKVRPGDTATVEGARKLFEAMFFSTRNYDLSRVGRAKVNEKIYPKEKLERLTKEDLKEIEWLPPLKVAEDVYNEEGDIVVEKGTLITPEVALKLAALKNYDEFKVEPDYDDAGRILHKADIVGAVKALMEVHAELRPYDDIDHLGNRRVRGVGELAEIAFKSGLFKLEKAVKEKLAVADVDSVMPQDLINPRTAINPLKEFFTLTSLCQFMDQTNPLAETTHKRRLSALGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGQNIGLINSLTTYGKINWLGFLETPYRKVVNGKVTDEVVYMTAEEEENYVIAQANAPVDENGYITADTVMARHKAEFKLVKREEVQFMDVSPKQVFSVSASLIPFLEHDDANRALMGSNMQRQAVPLIKTEAPLVATGMEKEVALYSRAAVVAKRSGVVESVTADKIIIKVDPEEIEEGGISVDTGFDVYNLKKFQKSNQKTCINQRPIVKKGQRVKKGQIIADGPSMENGELALGKNVLVAFMPWRGYNFEDAILVSERLLKDDVYTSIHIQEFECEAVETKLGREEITRDIPNVSEAALRNLDESGIVRIGTYVKPGDILVGKVTPKGEQVLTPEEKLLQAIFGEKAKGVKDTSLRVPHGVEGVVIDVKILSRKGEAKDPRTQLIEAEEKLKLEREKQEEINLIKKDRDRKAAELILGKKVKEDVYDGAGNLLISAGEEITEDKVEQLVFFALRKPSIIDDEQVAEELKKIRLKAVDKIALVEHIYEEKKAALEMGHDLPAGVNKKVKVYIATKRKLTVGDKMSGRHGNKGVISQIRPVEDMPFLEDGTPIDIVLNPLGVPSRMNIGQVLEVHLGLAAKALGKKIEELMKVGLEKVREEIKAIYNDEQVSKLIDSLSDDELREVAKKLANGIRFESPIFNGAKEEEIKELLKRAGLPETGQLTVYDGLTGEPFDQDVTVGYMYMLKLIHLADDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRSRVYEAIVKGRYSFEPGLPESFNVLVRELKALALDVKFIKELEEEEGESENPENAH
>NC_014926.1|WP_041440093.1|1549277_1549655_-|50S-ribosomal-protein-L7/L12
MTKEQIIEAIKNMTVLELVDLINAIKEEFGVSDMPVVAAAGPVAAGGAAGAAAEEKTEFDVILKSPGAKKINVIKVVREITGLGLKEAKALVDNAPSPVKEGVSKEEAEEIKKKLEEAGAEVEIK
>NC_014926.1|WP_013538325.1|1549700_1550240_-|50S-ribosomal-protein-L10
MKTRKHKEQIAQELKEKFQKAPLVILTNFQGMTVAETNQLRRKLREAGAEYKVVKNTLMRYAYPGTPVEQIKDAFVGPTGIVFAFDDIVAAAKALKDYMAGDGKEEPKLKFKAAIVEGKVADFNMIKQLAELPSREELLGQLAFTLKYPVNAMAWSLENLFTKLVTVLENVKAEKEGAA
>NC_014926.1|WP_013538326.1|1550418_1551141_-|50S-ribosomal-protein-L1
MPKHGKKYMNALALVDRKKLYPLKEAIALVKKMADVTQRNFDQTVEMAVRLNVDPKYQDQMVRGSVVLPHGLGKERVVAVIAQGEKLNEAKEAGADYVGGDDLIQKIQQGWLDFDVLIATPDMMGKVGRLGRILGPRGLMPNPKTGTVTFDVAKAVKEAKRGKVDFKVEKAGIVHAPIGKVSFDEEKLYENAVALMKAILAAKPSGAKGQYVKSVAVAATMDPGVKVDVFDAVNAAQSVE
>NC_014926.1|WP_013538327.1|1551197_1551623_-|50S-ribosomal-protein-L11
MAKKVVAEVKLQLPAGEATPAPPVGPALGQHGVNIMEFVKAFNAATADKKGLVIPVIITIYSDRSFDFVLKTPPASVLIKKAAGIEKGAHMPKKEWVGQITKEQLRQIAEQKMPDLNCYDIEAAMRIIKGTAENMGVKVVD
>NC_014926.1|WP_013538328.1|1551639_1552380_-|transcription-termination/antitermination-factor-NusG
MAEKKWYTLHVQSGFEFRVKANLEKALKEEGVEDKVEEIFIPAVEKVVFKALGKEKGEVPLHTEEPKSIEIEGDEGKTVTFRVENGQVWVESCQCEKKKCTPDKPISRIGQKIKCPENRVEAKIELRDRLYPGYIFIKADLDKDLQSLIRRVPRVLGFVSAGGKPVTVSEAEIQAMKERLKRGVPRIRKLKFDIGDKVKIKEGPFIGFEGTISEIDPEHGKLIVLVNIFDRQTPVELEFDQVEKIS
>NC_014926.1|WP_013538329.1|1552399_1552582_-|preprotein-translocase-subunit-SecE
MSPFQFLKEVREELQRVTWPSKEEVVEATIAVIVFCAVIAAYFWVIDTVLTAALEVILAK
>NC_014926.1|WP_013538330.1|1552750_1552915_-|50S-ribosomal-protein-L33
MAKKGPREIIQLACTECKRRNYSTTKNKRNTPDRLELRKYCPWCNKHTLHREVK
>NC_014926.1|WP_013537014.1|1552964_1554161_-|elongation-factor-Tu
MAKQKFERTKPHKNVGTIGHVDHGKTTLTAAITHCLALQGKAQEVSYDQIDKAPEERERGITIATAHVEYESDKYHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHVLLARQVNVPAIVVFLNKVDMVDDEELLELVELEVRELLSEYGYPGDEVPVIRGSALKALECTDPNCEWCQPIYELVKALDEYVPEPVREIDKPFLMPIEDVFSISGRGTVVTGRVERGTLKVGDEVEIVGLRDEPIKTVATGIEMFRKVLDEALPGDNIGVLLRGVGKDEVERGMVVAKPGSIKPHRKFKAEVYILSKEEGGRHTPFFNGYQPQFYFRTTDVTGKVKLPEGVEMVMPGDNVTFEVELLKPVAIEEGLRFAIREGGRTVGAGVVTEILD

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Crispr_ID: NC_014926_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014926_9

1609896-1610638

Orphan

Consensus_repeat	Method
GTTTTATTTGAACAAGTGGGATTTAAAC	PILER-CR
GTTTTATTTGAACAAGTGGGATTTAAAC	CRISPRCasFinder
GTTTTATTTGAACAAGTGGGATTTAAAC	CRT
CGGTTTTATCTGAACAAGTGGGATT	PILER-CR

9 spacers

The CRISPR arrays of NC_014926_9

>merge|NC_014926|9|1609896-1610638|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTATTTGAACAAGTGGGATTTAAACCCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAGGTTTTATTTGAACAAGTGGGATTTAAACTATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAGGTTTTATTTGAACAAGTGGGATTTAAACGAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGGGTTTTATTTGAACAAGTGGGATTTAAACATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACCGTTTTATTTGAACAAGTGGGATTTAAACTAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAAGTTTTATTTGAACAAGTGGGATTTAAACTCCAATTATACTCCTAAATATTCTTTTTTAAACCAGTTTTATTTGAACAAGTGGGATTTAAACGCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACCGTTTTATTTGAACAAGTGGGATTTAAACCATATACAATATCTATTCCTTCTATCAGAGATGCTGTTTTATTTGAACAAATGAGATTTAAACTGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTGGTTTTATCTGAACAAGTGGGATTTAAATCAAGCTACGGCGGTTTACCTGCCATAGCTTCTATCCGTTTTATCTGAACAAGCAAGTAGGATTTAAACGATAATCAGCTTCGTCCCTAAAGAGTTGATAAACGGTTTTATCTGAACAAGTGGGATT

>NC_014926|9|9|1609896-1610316|PILER-CR
GTTTTATTTGAACAAGTGGGATTTAAAC	CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG
GTTTTATTTGAACAAGTGGGATTTAAAC	ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC
GTTTTATTTGAACAAGTGGGATTTAAAC	TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA
GTTTTATTTGAACAAGTGGGATTTAAAC	TCCAATTATACTCCTAAATATTCTTTTTTAAACCA
GTTTTATTTGAACAAGTGGGATTTAAACGCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACCGTTTTATTTGAACAAGTGGGATTTAAACCATATACAATATCTATTCCTTCTATCAGAGATGCTGTTTTATTTGAACAAATGAGATTTAAACTGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTGGTTTTATCTGAACAAGTGGGATTT	AAATCAAGCTACGGCGGTTTACCTGCCATAGCTTCTATC
CGTTTTATCTGAACAAGCAAGTAGG	ATTTAAACGATAATCAGCTTCGTCCCTAAAGAGTTGATAAACGGTTTTA


>NC_014926|9|9|1609896-1610512|CRISPRCasFinder
GTTTTATTTGAACAAGTGGGATTTAAAC	CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG
GTTTTATTTGAACAAGTGGGATTTAAAC	ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC
GTTTTATTTGAACAAGTGGGATTTAAAC	TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA
GTTTTATTTGAACAAGTGGGATTTAAAC	TCCAATTATACTCCTAAATA
TTCTTTTTTAAACCAGTTTTATTTGAAC	AAGTGGGATTTAAACGCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACC
GTTTTATTTGAACAAGTGGGATTTAAAC	CATATACAATATCTATTCCTTCTATCAGAGATGCT
GTTTTATTTGAACAAATGAGATTTAAAC	TGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTG
GTTTTATCTGAACAAGTGGGATTTAAAT

>NC_014926|9|8|1609896-1610512|CRT
GTTTTATTTGAACAAGTGGGATTTAAAC	CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG
GTTTTATTTGAACAAGTGGGATTTAAAC	ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC
GTTTTATTTGAACAAGTGGGATTTAAAC	TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA
GTTTTATTTGAACAAGTGGGATTTAAAC	TCCAATTATACTCCTAAATATTCTTTTTTAAACCA
GTTTTATTTGAACAAGTGGGATTTAAAC	GCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACC
GTTTTATTTGAACAAGTGGGATTTAAAC	CATATACAATATCTATTCCTTCTATCAGAGATGCT
GTTTTATTTGAACAAATGAGATTTAAAC	TGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTG
GTTTTATCTGAACAAGTGGGATTTAAAT

>NC_014926|9|10|1610484-1610638|PILER-CR
	CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG
GTTTTATTTGAACAAGTGGGATTTAAAC	GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG
GTTTTATTTGAACAAGTGGGATTTAAAC	ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC
GTTTTATTTGAACAAGTGGGATTTAAAC	TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA
GTTTTATTTGAACAAGTGGGATTTAAAC	TCCAATTATACTCCTAAATATTCTTTTTTAAACCA
GTTTTATTTGAACAAGTGGGATTTAAACGCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACCGTTTTATTTGAACAAGTGGGATTTAAACCATATACAATATCTATTCCTTCTATCAGAGATGCTGTTTTATTTGAACAAATGAGATTTAAACTGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTGGTTTTATCTGAACAAGTGGGATTT	AAATCAAGCTACGGCGGTTTACCTGCCATAGCTTCTATC
CGTTTTATCTGAACAAGCAAGTAGG	ATTTAAACGATAATCAGCTTCGTCCCTAAAGAGTTGATAAACGGTTTTA
TCTGAACAAGTGGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014926.1\|WP_013538376.1\|1593708_1594923_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376627
NC_014926.1\|WP_013538378.1\|1595987_1596512_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538382.1\|1599591_1600680_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_014926.1\|WP_013538381.1\|1598855_1599623_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_014926.1\|WP_013538394.1\|1615328_1615706_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538391.1\|1613938_1614145_+\|thiamine-biosynthesis-sulfur-transfer-protein	unknown	unknown	gnl\|CDD\|340763
NC_014926.1\|WP_013538388.1\|1611837_1613301_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_014926.1\|WP_013538389.1\|1613310_1613601_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_014926.1\|WP_157629634.1\|1614147_1614564_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|340815
NC_014926.1\|WP_013538385.1\|1601075_1603385_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|224119
NC_014926.1\|WP_157629632.1\|1600705_1600969_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538390.1\|1613597_1613918_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538379.1\|1596953_1597799_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|224858
NC_014926.1\|WP_013538395.1\|1615721_1616240_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_041439591.1\|1610688_1610898_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538387.1\|1610977_1611820_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_014926.1\|WP_013538393.1\|1614763_1615276_-\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538386.1\|1603395_1603854_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538377.1\|1595001_1595985_+\|hypothetical-protein	unknown	unknown	unknown
NC_014926.1\|WP_013538380.1\|1597827_1598859_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213026

Protein	Function_ID	Function_description	E-value
NC_014926.1\|WP_157629634.1\|1614147_1614564_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|340815	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family. Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.	3.13068e-41
NC_014926.1\|WP_013538376.1\|1593708_1594923_+\|hypothetical-protein	gnl\|CDD\|376627	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation. This presumed domain is about is about 360 residues long. The function of this domain is unknown. It is found in some proteins that have two C-terminal CBS pfam00571 domains. There are also proteins that contain two inserted Fe4S domains near the C-terminal end of the domain. The Methanothermobacter thermautotrophicus gene MTH_855 product has been misannotated as an inosine monophosphate dehydrogenase based on the similarity to the CBS domains. Based on genetic analyses in the methanogen Methanosarcina acetivorans, this family is a key component of the metabolic network for sulfide assimilation and trafficking in methanogens. It is essential to a novel, O-acetylhomoserine sulfhydrylase-independent pathway for homocysteine biosynthesis, and may catalyze sulfur incorporation into the side chain of an as yet unidentified amino acid precursor. The DUF39-CBS and DUF39-ferredoxin architectures repeatedly occur together in the genomes of methanogenic Archaea, suggesting they may be of diverged function. This is consistent with a phylogenetic reconstruction of the DUF39 family, which clearly distinguishes the CBS-associated and ferredoxin-associated DUF39s.	0
NC_014926.1\|WP_013538379.1\|1596953_1597799_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|224858	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism].	2.55213e-94
NC_014926.1\|WP_013538382.1\|1599591_1600680_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.27341e-32
NC_014926.1\|WP_013538388.1\|1611837_1613301_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_014926.1\|WP_013538381.1\|1598855_1599623_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.26379e-86
NC_014926.1\|WP_013538391.1\|1613938_1614145_+\|thiamine-biosynthesis-sulfur-transfer-protein	gnl\|CDD\|340763	cd17506, Ubl_SAMP2_like, ubiquitin-like (Ubl) domain found in small archaeal modifier protein (SAMP2). Ubiquitin-like small archaeal modifier protein 2 (SAMP2) shows a beta-grasp fold of Ub, suggesting that this archaeal Ubl molecule is more closely related to eukaryotic Ub and Ubls than to its prokaryotic counterpart. Several Ub-like structural features such as an N-terminal single lysine residue and di-glycine motif at the C-terminus, spatially isolated, implicate formation of a poly-SAMPylated chainpoly-SAMPylation. SAMP2 can form covalent conjugates with its protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. It also forms homo-conjugates through the intermolecular isopeptide bond between the C-terminal Gly and the Lys58 side chain, a feature that likely resembles polyubiquitination. SAMP2 is involved in sulfur transfer during tRNA thiolation much like Urm1. This family also includes uncharacterized proteins such as Methanothermococcus thermolithotrophicus Mth1743, Pyrococcus furiosus PF1061 and others, all closely related to proteins MoaD.	3.9663e-06
NC_014926.1\|WP_013538387.1\|1610977_1611820_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	6.38475e-15
NC_014926.1\|WP_013538389.1\|1613310_1613601_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.26356e-36
NC_014926.1\|WP_013538385.1\|1601075_1603385_+\|primosomal-protein-N'	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0
NC_014926.1\|WP_013538380.1\|1597827_1598859_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213026	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins. This family contains a hypothetical protein Ecf1 from Escherichia coli and its prokaryotic homologs. Although their biochemical properties remain to be determined, members in this family contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.	3.83842e-45

>NC_014926.1|WP_013538386.1|1603395_1603854_+|hypothetical-protein
MKKLLIPLAIAAAVTGCAVNQKPPKTTVLTQEQVKAELLGDTVPIYPGFQLVSDKSFIYESGNIKVGRLIFKGDAPVKDIVSYYKATLPEKGWEPVAITIYGDSAQLTYVTPDQFLQIQVKKQFGQTYLIISLGPRGQASAETPPQVLTNQN
>NC_014926.1|WP_013538385.1|1601075_1603385_+|primosomal-protein-N'
MFIQVALNLPVEELFTYRVTGRESHKPEVGKRAIVPFGPSNRLQTGIIVSVSTSPPEGNFEIKEVFDIPDPYPLFTETLFRLAEFVSRRYCSSLGEALFRFLPGAFIVEEKVRVSPLKPQKPLTPKEEELHTLISSFSSPVSVSFLRRKFGGSSLNAYLKRLVEKGAARLNTQLKPGGPPKEKWVRYLKEGKCGPKGRELLNLLKKHGELPLKHLTYFGFSRGVIENLRQKGLIQITEKESLLPPPPPSLSPRGTTELTQEQKAVLESLFKYRGIHLLSGVTCSGKMEVYLHAARRAVDSGNSVLILVPELLLTPELQSRIESLFGTNYALYHGGLTPAQRASVWLKALKGEVPLIVGTRIAVALPMKNLGLIVLDEEQDPSYKEQQKPYYHARTVAVKRSELEKVPLLLVSATPSVESYYRAKRGEFLFHFLPSRVTRIPPPKVELVDLKKERKRVGIFSEKLLSALERAVNSGGQALLFINRRGYSHKIICPNCGYTLNCKKCGVPVTYHKEKKCFICHLCGTRYKLIFRCIKCGQRLEFTGYGTERVTQELKLLYPNWKIERFDLDTVKTYKDANRLIKLAVEGKIDVIVGTSIAVKGHNLPNLTFLGILIADQLTGPPDYMGAERAYQAIVQAIGRVGRFKPGYAVVQAFNPDFYPIKYAVTGQFHTFYEEELSYRKLFNYPPYTLGAVIEVEVPETQKSKLKELYAAMKKLPSQEVSKPLPLPNGKTYSIFIKLKSDTLLPKIKQLLSRFKVTYKIDVEPIKIP
>NC_014926.1|WP_157629632.1|1600705_1600969_+|hypothetical-protein
MERFPKSYLGSYVELVGTVTDKRPQDLFPPYPGDPLLCDSSGCIYIHDDTEDLNKFLGKKVKVLGFVKVDTFNFPYVDVIKIEPLGR
>NC_014926.1|WP_013538382.1|1599591_1600680_+|glycosyltransferase-family-4-protein
MARKALVVLDERWNSALTDLGLKIARSLNCRVTVAALKGYPAFSRAAELGLETLPIEDPRRGLPLKAFLSFKKAVEAVKPQVVVTIRGDEMLFAALLKKRHGYKLFRVHGHAKGIRNTLLNRFIHKRFVNGVVVSSRRLLNDVVAPLEKLLIPGIVDTSLFSFSQEARHRWRRRLGVPAELPLIGVVARFDPVKGHDLLFKALHAVKNQRWKLVVVGREEGVSLRQLKELAASLGILERIAFFTDRVADLPGLLSACDIGVVPSKGSEVVLRAPLEFMACRTCLVATAVGALPEVIAPPWGRLVKPSADGIALGLSSLLKLGAERLLELGKAAQEVAREKYSFEALSPRIDRFICSGVRNGQ
>NC_014926.1|WP_013538381.1|1598855_1599623_+|glycosyltransferase-family-2-protein
MSLTVALLTYNSRRHLEKVLKSVERVADEIVALDSGSTDETVEILKQFGARVFTRKFDNFVNQKNHLLSLCRTRWVLFLDDDEVLSEELARSVKEAVREEKHAGYHLNRVTNYLGRWIRHAWNPDWQLRLAKRERCRWVGNGVHERLEVNGSLGYLQGELLHYSYSSLSEHLRKIDLYSTLYAEGAHRKGKRFSLLKLLTSPAGAFLRRFVLKRGFLDGFEGFLLSVMASYYSFLKYAKLWEIERNGPKGTGGSR
>NC_014926.1|WP_013538380.1|1597827_1598859_+|polysaccharide-deacetylase-family-protein
MKVVFYLHRVYPESGPDDLSLKSFERVLKAIKGRFKVVPLQELLSADSGGNLASITFDDGYADNWVYAYPILKKLGLKAHLFITANRIQNAPTVRPTLSDYWSGKVSLRELFKPTSMGECHIRFFRNGDLSEFLTWEELHAMADVFTFGAHGLNHGKLPVSEEIVDFFDGKNLHRDFLFPEPELFPGKPRFKTRSTLWGRAFIPSRELLELCRSFPKEGNWKERLRQELRSVKPGRLETEREAASRIESELLETKRLIRENLGIEPDTFSWPFGHYTSLSREVASKHHSFLFTTKRGVLNGASPLELPRVPLGRDLFTALGRVITFSTPLWRLYQRFKRGKSL
>NC_014926.1|WP_013538379.1|1596953_1597799_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKLIVPAPAKVNLSLWINGKRPDGYHELVTVLHTVNLFDTLTFMPSDRFELQVEGDQLLPLGRSNLIVKAAELFRRATGIKPNVKIKLLKKIPIGAGLGGGSSNAAAALKALNTLYGKPLSEPELHQLAAQIGSDVPFFIRGGLAVATGRGEKLKHYNPAHFKLLLVYPDFSCPTAEVYKSLPPINREMGVEDAEKLIISPLIVGNLREVAENAHNDLEESKHPCVERVKREVKPVLEEVGVKPIMSGSGSCVFGLVEDEKEIDLSPLKKSGWWYKLLTAI
>NC_014926.1|WP_013538378.1|1595987_1596512_+|hypothetical-protein
MHYKLEAQKLLSALRRGEYKWKEIECNNKEIKHLRKALKSHSFCNSICKDTSSITAREKDFCKRILQSEKNGIPLSLKSPKDLDTVVRKVVLSDSLQWAYAKLTNGRKVLYCYCAEKMFGTGHWLLGSCLEDERVKVLTVFFLFPDRKPLKRFLVSRKSKNNTIVKVLAAEMAE
>NC_014926.1|WP_013538377.1|1595001_1595985_+|hypothetical-protein
MKPLNRAQREALKELNALTEELKLLFSFYRWYLEEMEFDSETEEWTQVFHIRTNIQKLFLLPLPGLAVTARKKKEYIKLCRKLRELDLKLLKKRDFLKKEFDFESFRTEECQFRNWKEIPKKLWWYHLDSNEIPDFNVPIWLLVPETCKFKAVIVSGRLKEKPVKVLLYVPIETNLKKREKLEKDIVSNIDFDYPTFIYDEFRISGRVKKQHSFSAFVLPISGLIAKLHLTNKLYLEELKHKELLIAFPKETSVFKTRFYQELKEAIFKGNTKFLNEKTLKEEQFAFFKVDIVISRELEIELKKESGEKKLLPEKTSELSGDIVLQV
>NC_014926.1|WP_013538376.1|1593708_1594923_+|hypothetical-protein
MAEQFKVVKTYEEINEKIRKGEAVVVTAEEMIEIVEELGVVKAAREVDVVTTGTFGAMCSSGAFLNVGHTKPRMKMEEIYLNGVPAYGGIAAVDLYIGATALPENDPRNEVYPGRFEYGGAHVIEELIAGEDIELEAYGYGTDCYPRREIKKLINIKTINDAILCSPRNAYQNYNVAVNKSSRTIYTYMGTLKPNFGNATYSGAGQLSPLMNDPFFETIGVGTRIFLGGGIGYVAFHGTQHAPFGVKRSKKGQPMEGAGTLMVVGDMKQMSTDFIKAASILGYGVSMFVGIGIPIPILNERIAYYTSVRDDEIFAPVIDYSVDYPSGNAKPLKYVSYAELRRGYIELNGKKVPTSPVSSYYKAREIANILKEWIKSGEFEISKPAETLPAPEPNVKIEYDTRKD
>NC_014926.1|WP_041439591.1|1610688_1610898_-|hypothetical-protein
MCVGDFPTLQEIKYFIEKELLKPNEIEDIQCGFSAIVVYLKKRPSIERSLELRDKVYKAFGKKITVIFV
>NC_014926.1|WP_013538387.1|1610977_1611820_-|energy-transducer-TonB
MSRLSLLSLFISVLINGALLYLLSIELKPPRLSEKPEAPIVLNFGYPSPKRENGPRPKAESKTVNKTPPLPKKNVKQKRHYKKKRNHSLKTSPKKTVKPSTPKRKTQLLQKNLKITKNEMKHSHFGPTHSKRTSANSLTTPSTQNGTSPTASPLKTPSERNSTTSGLATSGACPGRKPLSSKTNTKKEPSLENYLKQVLKEVERHKFYPPIARRLGIEGRVKVEIVISPEGQLSSLRILSSPSRILTSAVVKILNNCSFPKPPTNKRVKLEFVINFKLEH
>NC_014926.1|WP_013538388.1|1611837_1613301_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MELLEKSLKELHTLIKKKELKPSELVQANIERIEQTEEKLNAYITVCAQEALEKAKVADEELLRLSEDEIPELFGIPIAIKDNINVEGIRMTCASRMLESFISPYDATVTKKLRERGAIFIGKNNLDEFAMGSSTETSYFGPTKNPWDFSRVPGGSSGGSAAAVAARSALASLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLTAFASSLDQIGPITKNVEDAAYLLNIISGLDSKDATSAKLPVPNFLEALNGEVKGLKVGLPKEYFVEGIEPEVKALVEEAARKLEKLGAELVEVSLPTTKYSVETYYIIAPAEASSNLGRFDGVRYTYRAKNYKGLVDMYCKTRAEGFGDEVKRRIMIGTYTLSAGYYDAYYLKAQKVRTLIYNDFQKAFESVDVLLTPVTPEVAFKIGEKTDDPIKMYLSDVFTIAVNLAGLPALSLPCGLTAQNLPVGVQLIGKAFDEETILKVAHALEAELNLSLKPAL
>NC_014926.1|WP_013538389.1|1613310_1613601_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MKLSREEVLHIAMLARIELREEEVEKFRNQLSEILTFVEKLNELDTEGIDPKFSVIPPENVLREDVPGMSLPREKVFMNAPETDGEYFIVPKVVKK
>NC_014926.1|WP_013538390.1|1613597_1613918_-|hypothetical-protein
MKLFLDDWREPPPDYILVRSVNELKKLVKRFGPQIEVLDLDNHLGPYQSLGGTGLDFIKWLEEAVYLGEVELNPDVKIVSHSSDPLARELIEEVGASIKAYLRSRR
>NC_014926.1|WP_013538391.1|1613938_1614145_+|thiamine-biosynthesis-sulfur-transfer-protein
MGTILVEQDGRERAVEFNGRRIRVDKLLLQMGIYPETAVVVRNGELLCDDELLTDGDKVEVVVATSRG
>NC_014926.1|WP_157629634.1|1614147_1614564_+|Holliday-junction-resolvase-RuvX
MGRVMALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINAQGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLGKEKEELDDYAAALILKEWLELKR
>NC_014926.1|WP_013538393.1|1614763_1615276_-|hypothetical-protein
MSKDYSQELLDTLREISELFFEHYSSPYNAIIAFTNEKPVKPLIELEAAFVHLVSAVKALSQVDNSEEALERFENNLKRFKGHVERMLLDLYKLAYIEIISLLKKRLEELKGDLYEKEFVGYLELLDTAVSRFYSVRQREINTVGISKGEVLNLYRKGLDELVKKYKEIR
>NC_014926.1|WP_013538394.1|1615328_1615706_-|hypothetical-protein
MEDILRVFVFNLVYAVVIIGVLYLIYKSLLLRYSRLENAGKLSASEPSSGSAVSVQSAELEVREFVDPKLTLSWERGAVYPLGLKGEKVIRVSLPSEEERKELERLLGPELTRVLYPKSGVKLTV
>NC_014926.1|WP_013538395.1|1615721_1616240_-|hypothetical-protein
MREFLKRFKYKSKTAVKAVRYGILDLFYASLWVVAALAIPVVVKVIFSLKAGIALNDLKSFIFSSSYFSGLLGTVLMYMVEGVILIFTATIVSGFLKLDFSELLGEGAFFYLMIFVLVFVWFFYKIMGWLFLGQNPFIFHNKDAFVLLIILFLMAFDKSPYKLRKPLSSGKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014926_2	2.3\|321369\|36\|NC_014926\|PILER-CR,CRISPRCasFinder,CRT	321369-321404	36	NC_014917.1	5076-5111	0	1.0
NC_014926_8	8.9\|1539914\|38\|NC_014926\|PILER-CR,CRISPRCasFinder,CRT	1539914-1539951	38	NC_014917.1	28159-28196	0	1.0

1. spacer 2.3|321369|36|NC_014926|PILER-CR,CRISPRCasFinder,CRT matches to position: 5076-5111, mismatch: 0, identity: 1.0

acgctttcgagggccgaaatcagcttccctgctgcg	CRISPR spacer
acgctttcgagggccgaaatcagcttccctgctgcg	Protospacer
************************************

2. spacer 8.9|1539914|38|NC_014926|PILER-CR,CRISPRCasFinder,CRT matches to position: 28159-28196, mismatch: 0, identity: 1.0

gagcaggaatagaactcaagagagaaaggccgttttag	CRISPR spacer
gagcaggaatagaactcaagagagaaaggccgttttag	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014926_2	2.3\|321369\|36\|NC_014926\|PILER-CR,CRISPRCasFinder,CRT	321369-321404	36	NC_014917	Thermovibrio ammonificans HB-1 plasmid pTHEAM01, complete sequence	5076-5111	0	1.0
NC_014926_8	8.9\|1539914\|38\|NC_014926\|PILER-CR,CRISPRCasFinder,CRT	1539914-1539951	38	NC_014917	Thermovibrio ammonificans HB-1 plasmid pTHEAM01, complete sequence	28159-28196	0	1.0
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979239	Flavobacterium phage V156, complete genome	36646-36680	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585306	Flavobacterium phage FCOV-F43, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585275	Flavobacterium phage FCOV-F4, complete genome	36623-36657	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585280	Flavobacterium phage FCOV-F12, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756088	Flavobacterium phage FCOV-F25, complete genome	36623-36657	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY951963	Flavobacterium phage FCV-3, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585285	Flavobacterium phage FCOV-F19, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756089	Flavobacterium phage FCOV-F27, complete genome	36674-36708	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585297	Flavobacterium phage FCOV-F33, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585274	Flavobacterium phage FCOV-F3, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585315	Flavobacterium phage V189, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585277	Flavobacterium phage FCOV-F8, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585300	Flavobacterium phage FCOV-F36, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979242	Flavobacterium phage V182, complete genome	36641-36675	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756084	Flavobacterium phage FCOV-F6, complete genome	36666-36700	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979243	Flavobacterium phage VK20, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585273	Flavobacterium phage FCOV-F1, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585298	Flavobacterium phage FCOV-F34, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585286	Flavobacterium phage FCOV-F20, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585296	Flavobacterium phage FCOV-F32, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979246	Flavobacterium phage VK52, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585314	Flavobacterium phage V188, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585287	Flavobacterium phage FCOV-F21, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY992519	Flavobacterium phage V175, complete genome	36646-36680	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585299	Flavobacterium phage FCOV-F35, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585279	Flavobacterium phage FCOV-F11, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585295	Flavobacterium phage FCOV-F31, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585304	Flavobacterium phage FCOV-F41, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585288	Flavobacterium phage FCOV-F22, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585309	Flavobacterium phage FCOV-F48, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585293	Flavobacterium phage FCOV-F29, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585291	Flavobacterium phage FCOV-F26, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585302	Flavobacterium phage FCOV-F39, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585284	Flavobacterium phage FCOV-F18, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585305	Flavobacterium phage FCOV-F42, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585290	Flavobacterium phage FCOV-F24, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585311	Flavobacterium phage V183, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585278	Flavobacterium phage FCOV-F10, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585294	Flavobacterium phage FCOV-F30, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY951964	Flavobacterium phage FCV-11, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585283	Flavobacterium phage FCOV-F17, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585301	Flavobacterium phage FCOV-F38, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979236	Flavobacterium phage FCV-10, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979237	Flavobacterium phage FCV-16, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979240	Flavobacterium phage V157, complete genome	36646-36680	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585303	Flavobacterium phage FCOV-F40, complete genome	36626-36660	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979241	Flavobacterium phage V165, complete genome	36643-36677	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979238	Flavoibacterium phage FCV-20, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979247	Flavobacterium phage VK58, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756083	Flavobacterium phage FCOV-F2, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756085	Flavobacterium phage FCOV-F9, complete genome	36669-36703	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY992520	Flavobacterium phage V181, complete genome	36643-36677	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585308	Flavobacterium phage FCOV-F47, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT431535	Flavobacterium phage FCV-1.01, complete genome	36560-36594	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756096	Flavobacterium phage V186, complete genome	36180-36214	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979244	Flavobacterium phage VK42, complete genome	36655-36689	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585310	Flavobacterium phage FCOV-F56, complete genome	36167-36201	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585292	Flavobacterium phage FCOV-F28, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	NC_041845	Flavobacterium phage FCV-1, complete genome	36654-36688	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585276	Flavobacterium phage FCOV-F7, complete genome	36625-36659	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585289	Flavobacterium phage FCOV-F23, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MK756090	Flavobacterium phage FCOV-F37, complete genome	36641-36675	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585312	Flavobacterium phage V184, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	MT585307	Flavobacterium phage FCOV-F44, complete genome	36628-36662	9	0.743
NC_014926_9	9.6\|1610254\|35\|NC_014926\|PILER-CR,CRT	1610254-1610288	35	KY979245	Flavobacterium phage VK48, complete genome	36777-36811	9	0.743

1. spacer 2.3|321369|36|NC_014926|PILER-CR,CRISPRCasFinder,CRT matches to NC_014917 (Thermovibrio ammonificans HB-1 plasmid pTHEAM01, complete sequence) position: , mismatch: 0, identity: 1.0

acgctttcgagggccgaaatcagcttccctgctgcg	CRISPR spacer
acgctttcgagggccgaaatcagcttccctgctgcg	Protospacer
************************************

2. spacer 8.9|1539914|38|NC_014926|PILER-CR,CRISPRCasFinder,CRT matches to NC_014917 (Thermovibrio ammonificans HB-1 plasmid pTHEAM01, complete sequence) position: , mismatch: 0, identity: 1.0

gagcaggaatagaactcaagagagaaaggccgttttag	CRISPR spacer
gagcaggaatagaactcaagagagaaaggccgttttag	Protospacer
**************************************

3. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979239 (Flavobacterium phage V156, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

4. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585306 (Flavobacterium phage FCOV-F43, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

5. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585275 (Flavobacterium phage FCOV-F4, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

6. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585280 (Flavobacterium phage FCOV-F12, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

7. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756088 (Flavobacterium phage FCOV-F25, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

8. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY951963 (Flavobacterium phage FCV-3, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

9. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585285 (Flavobacterium phage FCOV-F19, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

10. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756089 (Flavobacterium phage FCOV-F27, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

11. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585297 (Flavobacterium phage FCOV-F33, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

12. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585274 (Flavobacterium phage FCOV-F3, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

13. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585315 (Flavobacterium phage V189, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

14. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585277 (Flavobacterium phage FCOV-F8, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

15. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585300 (Flavobacterium phage FCOV-F36, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

16. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979242 (Flavobacterium phage V182, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

17. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756084 (Flavobacterium phage FCOV-F6, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

18. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979243 (Flavobacterium phage VK20, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

19. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585273 (Flavobacterium phage FCOV-F1, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

20. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585298 (Flavobacterium phage FCOV-F34, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

21. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585286 (Flavobacterium phage FCOV-F20, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

22. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585296 (Flavobacterium phage FCOV-F32, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

23. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979246 (Flavobacterium phage VK52, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

24. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585314 (Flavobacterium phage V188, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

25. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585287 (Flavobacterium phage FCOV-F21, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

26. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY992519 (Flavobacterium phage V175, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

27. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585299 (Flavobacterium phage FCOV-F35, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

28. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585279 (Flavobacterium phage FCOV-F11, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

29. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585295 (Flavobacterium phage FCOV-F31, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

30. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585304 (Flavobacterium phage FCOV-F41, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

31. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585288 (Flavobacterium phage FCOV-F22, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

32. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585309 (Flavobacterium phage FCOV-F48, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

33. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585293 (Flavobacterium phage FCOV-F29, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

34. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585291 (Flavobacterium phage FCOV-F26, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

35. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585302 (Flavobacterium phage FCOV-F39, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

36. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585284 (Flavobacterium phage FCOV-F18, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

37. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585305 (Flavobacterium phage FCOV-F42, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

38. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585290 (Flavobacterium phage FCOV-F24, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

39. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585311 (Flavobacterium phage V183, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

40. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585278 (Flavobacterium phage FCOV-F10, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

41. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585294 (Flavobacterium phage FCOV-F30, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

42. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY951964 (Flavobacterium phage FCV-11, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

43. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585283 (Flavobacterium phage FCOV-F17, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

44. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585301 (Flavobacterium phage FCOV-F38, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

45. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979236 (Flavobacterium phage FCV-10, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

46. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979237 (Flavobacterium phage FCV-16, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

47. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979240 (Flavobacterium phage V157, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

48. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585303 (Flavobacterium phage FCOV-F40, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

49. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979241 (Flavobacterium phage V165, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

50. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979238 (Flavoibacterium phage FCV-20, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

51. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979247 (Flavobacterium phage VK58, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

52. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756083 (Flavobacterium phage FCOV-F2, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

53. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756085 (Flavobacterium phage FCOV-F9, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

54. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY992520 (Flavobacterium phage V181, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

55. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585308 (Flavobacterium phage FCOV-F47, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

56. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT431535 (Flavobacterium phage FCV-1.01, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

57. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756096 (Flavobacterium phage V186, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

58. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979244 (Flavobacterium phage VK42, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

59. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585310 (Flavobacterium phage FCOV-F56, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

60. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585292 (Flavobacterium phage FCOV-F28, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

61. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to NC_041845 (Flavobacterium phage FCV-1, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

62. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585276 (Flavobacterium phage FCOV-F7, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

63. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585289 (Flavobacterium phage FCOV-F23, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

64. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MK756090 (Flavobacterium phage FCOV-F37, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

65. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585312 (Flavobacterium phage V184, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

66. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to MT585307 (Flavobacterium phage FCOV-F44, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

67. spacer 9.6|1610254|35|NC_014926|PILER-CR,CRT matches to KY979245 (Flavobacterium phage VK48, complete genome) position: , mismatch: 9, identity: 0.743

tccaattatactcctaaatattcttttttaaacca	CRISPR spacer
ttaagatctactcctgcatattcttttttaaactt	Protospacer
*. *. * *******. ****************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15220 : 25774

Staphylococcus_virus(12.5%)

portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013536774.1\|15220_15997_+	DUF1828 domain-containing protein	Q4ZCC0	Staphylococcus_virus	3.9e-26	32.7
WP_013536775.1\|16337_18758_-	hypothetical protein	A0A2H4P6Z2	Pseudomonas_phage	7.8e-41	24.8
WP_013536776.1\|18744_19104_-	NLP/P60 protein	S5M7Z7	Pseudoalteromonas_phage	3.4e-09	34.6
WP_013536777.1\|19100_19700_-	DUF2163 domain-containing protein	H2BCS7	Synechococcus_phage	3.7e-08	29.4
WP_013536778.1\|19696_20035_-	hypothetical protein	NA	NA	NA	NA
WP_157629594.1\|20104_20389_-	hypothetical protein	NA	NA	NA	NA
WP_013536779.1\|20321_21914_-	hypothetical protein	A0A1P8DJN3	Virus_Rctr41k	3.1e-09	27.6
WP_013536780.1\|21910_23233_-\|portal	phage portal protein	M5A987	Nitratiruptor_phage	1.5e-49	33.4
WP_013536781.1\|23235_23637_-	hypothetical protein	NA	NA	NA	NA
WP_013536782.1\|23636_23990_-	hypothetical protein	NA	NA	NA	NA
WP_013536783.1\|23989_24448_-	HK97 gp10 family phage protein	G8I4M9	Mycobacterium_phage	2.7e-11	43.2
WP_013536784.1\|24434_24641_-	hypothetical protein	NA	NA	NA	NA
WP_013536785.1\|24652_25774_-	hypothetical protein	A0A2I7S6Z4	Vibrio_phage	6.2e-49	36.9

DBSCAN-SWA_2

529902 : 539464

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013537335.1\|529902_530790_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-97	57.6
WP_013537336.1\|530779_531343_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.1e-35	45.9
WP_013537337.1\|531339_532335_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-75	45.5
WP_013537338.1\|532331_533177_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	8.3e-30	33.2
WP_013537339.1\|533166_534072_-	histone deacetylase	A0A2K9L0I3	Tupanvirus	6.3e-36	37.9
WP_013537340.1\|534079_536230_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.8e-84	37.5
WP_013537341.1\|536219_536594_-	toprim domain-containing protein	NA	NA	NA	NA
WP_013537342.1\|536602_537520_-	hypothetical protein	NA	NA	NA	NA
WP_013537343.1\|537516_538071_-	hypothetical protein	NA	NA	NA	NA
WP_013537344.1\|538174_539464_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.3e-143	62.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014917

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection