CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_015062	Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence	0 crisprs	csa3,WYL,DEDDh	2
NC_015061	Rahnella sp. Y9602, complete sequence	1 crisprs	DEDDh,DinG,csa3,WYL,cas3	9
NC_015063	Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

70599 : 127977

Enterobacteria_phage(27.66%)

protease,terminase,holin,integrase,plate,portal,lysis,tail

attL 101832:101847|attR 121999:122014

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071882957.1\|70599_70893_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.1e-05	39.0
WP_013577767.1\|70822_72112_-\|tail	tail fiber domain-containing protein	A0A1V0E5M2	Salmonella_phage	1.6e-37	60.9
WP_013577768.1\|72170_72407_-	hypothetical protein	Q38624	Escherichia_phage	5.5e-24	67.1
WP_013577769.1\|72531_73206_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	2.9e-25	37.4
WP_041689158.1\|73207_73522_-	hypothetical protein	E4WL40	Enterobacteria_phage	1.0e-09	36.6
WP_013577770.1\|73522_76708_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	82.6
WP_013577771.1\|76768_77347_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	7.8e-72	73.5
WP_013577772.1\|77399_77807_-	hypothetical protein	NA	NA	NA	NA
WP_013577773.1\|77867_78599_-	C40 family peptidase	K7PJV6	Enterobacteria_phage	1.8e-126	85.1
WP_083812249.1\|78601_79342_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.3e-95	85.1
WP_013577775.1\|80259_80616_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	5.7e-25	49.1
WP_013577776.1\|80634_82986_-\|tail	phage tail tape measure protein	A0A2D1GPC9	Escherichia_phage	2.8e-136	41.0
WP_013577777.1\|82966_83281_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	3.5e-26	56.3
WP_013577778.1\|83301_83718_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	5.3e-22	43.2
WP_013577779.1\|83728_84466_-	Ig-like domain-containing protein	M9NYX0	Enterobacteria_phage	2.0e-88	68.5
WP_013577780.1\|84473_84878_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	3.7e-44	61.4
WP_013577781.1\|84874_85429_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.2e-53	59.4
WP_013577782.1\|85440_85716_-	hypothetical protein	K7PH43	Enterobacteria_phage	1.3e-16	46.2
WP_013577783.1\|85708_86035_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	2.5e-27	59.8
WP_041689178.1\|86120_88079_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.2e-276	74.2
WP_013577785.1\|88128_89607_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	4.7e-198	67.5
WP_013577786.1\|89603_89822_-	hypothetical protein	A5LH28	Enterobacteria_phage	8.3e-19	68.6
WP_013577787.1\|89818_91921_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	2.2e-310	72.1
WP_013577788.1\|91920_92409_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	4.1e-66	80.2
WP_013577789.1\|92840_93134_+	hypothetical protein	NA	NA	NA	NA
WP_013577790.1\|93130_93634_-\|lysis	lysis protein	S4TP37	Salmonella_phage	3.8e-22	38.3
WP_013577791.1\|93626_94166_-	lysozyme	A0A0P0ZGA2	Escherichia_phage	1.7e-68	69.6
WP_041689160.1\|94165_94372_-\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	1.2e-22	76.6
WP_013577793.1\|94804_95860_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.3e-133	65.1
WP_013577796.1\|96907_97249_+	hypothetical protein	NA	NA	NA	NA
WP_013577797.1\|97968_98790_-	antitermination protein	F1C595	Cronobacter_phage	2.4e-58	44.1
WP_013577798.1\|98803_99817_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.4e-76	43.7
WP_013577799.1\|99968_100724_-	adenine methyltransferase	A0A248SKY3	Klebsiella_phage	1.5e-75	66.0
WP_041689182.1\|100720_100903_-	hypothetical protein	G9L685	Escherichia_phage	1.7e-12	62.2
WP_013577801.1\|101565_102588_-	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	4.0e-39	57.6
101832:101847	attL	NA	NA	NA	NA
WP_071882959.1\|102584_102761_-	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	2.8e-09	52.7
WP_013577803.1\|102944_103451_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.9e-45	62.3
WP_013577804.1\|103492_103732_-	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	7.2e-24	81.4
WP_037033040.1\|103840_104560_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	6.9e-78	60.3
WP_013577806.1\|104663_104906_+	hexulose-6-phosphate synthase	K7PH44	Enterobacterial_phage	5.8e-29	77.5
WP_013577807.1\|104909_105368_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	5.3e-47	56.6
WP_013577808.1\|105367_105763_+	hypothetical protein	A4KWV6	Enterobacteria_phage	5.4e-40	56.6
WP_013577809.1\|106274_106484_+	hypothetical protein	NA	NA	NA	NA
WP_013577810.1\|106514_106673_+	hypothetical protein	NA	NA	NA	NA
WP_132964301.1\|106650_106887_-	hypothetical protein	NA	NA	NA	NA
WP_013577811.1\|107489_107981_+	hypothetical protein	Q7Y3W7	Yersinia_phage	2.0e-36	44.7
WP_013577812.1\|107982_108279_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	1.7e-22	58.9
WP_013577813.1\|108478_108721_+	excisionase	NA	NA	NA	NA
WP_013577814.1\|108704_109829_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	4.0e-104	51.4
WP_013577815.1\|109903_110575_-	porin	Q1MVN1	Enterobacteria_phage	1.1e-64	58.2
WP_013577816.1\|111184_111373_-	hypothetical protein	NA	NA	NA	NA
WP_014416542.1\|111531_111945_-	hypothetical protein	NA	NA	NA	NA
WP_013577817.1\|112174_112954_+	(S)-acetoin forming diacetyl reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-17	31.5
WP_013577818.1\|113018_113885_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158307035.1\|114305_115742_-	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA
WP_013577820.1\|116241_116409_+	YhfL family protein	NA	NA	NA	NA
WP_013577821.1\|116706_118848_-	5-histidylcysteine sulfoxide synthase	NA	NA	NA	NA
WP_013577822.1\|118994_120119_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	4.6e-28	26.8
WP_013577823.1\|120525_122073_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	3.4e-37	40.0
121999:122014	attR	NA	NA	NA	NA
WP_013577824.1\|122145_123693_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-09	54.5
WP_013577825.1\|124538_125033_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_014416544.1\|125064_126612_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013577827.1\|126627_127977_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

541814 : 584702

uncultured_Caudovirales_phage(36.36%)

capsid,holin,integrase,plate,tail

attL 535159:535176|attR 579253:579270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
535159:535176	attL	NA	NA	NA	NA
WP_013578208.1\|541814_542939_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	1.1e-103	52.0
WP_013578209.1\|542922_543165_-	excisionase	NA	NA	NA	NA
WP_013578210.1\|543243_543747_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.4e-32	45.2
WP_148232221.1\|543743_546005_-	hypothetical protein	H9C157	Pectobacterium_phage	5.2e-95	53.7
WP_013578212.1\|546141_546441_-	hypothetical protein	NA	NA	NA	NA
WP_013578213.1\|546663_546960_-	hypothetical protein	NA	NA	NA	NA
WP_013578214.1\|547108_547264_-	hypothetical protein	NA	NA	NA	NA
WP_013578215.1\|547580_547943_-	hypothetical protein	I6RTG2	Croceibacter_phage	2.5e-07	63.4
WP_013578216.1\|548148_548610_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	3.3e-25	44.0
WP_013578217.1\|548713_548962_+	helix-turn-helix transcriptional regulator	A0A0U2S629	Escherichia_phage	6.2e-10	43.6
WP_013578218.1\|548972_549437_+	hypothetical protein	H9C162	Pectobacterium_phage	2.7e-14	39.8
WP_013578219.1\|549453_549690_+	hypothetical protein	NA	NA	NA	NA
WP_013578220.1\|549686_549854_+	hypothetical protein	NA	NA	NA	NA
WP_013578221.1\|549856_550843_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.7e-42	36.8
WP_083812248.1\|550751_551279_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.8e-44	55.9
WP_013578223.1\|551406_551883_+	hypothetical protein	NA	NA	NA	NA
WP_013578224.1\|551875_552298_+	hypothetical protein	NA	NA	NA	NA
WP_013578225.1\|552294_552789_+	hypothetical protein	H6WRY2	Salmonella_phage	1.6e-17	60.0
WP_013578226.1\|552785_552974_+	hypothetical protein	NA	NA	NA	NA
WP_158307036.1\|553078_553234_+	hypothetical protein	NA	NA	NA	NA
WP_013578228.1\|553237_553921_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	2.0e-50	48.9
WP_013578229.1\|553917_554121_+	flagellar FlbD family protein	NA	NA	NA	NA
WP_013578230.1\|554113_554623_+	hypothetical protein	A0A0H4IQ56	Shigella_phage	3.4e-63	71.0
WP_013578231.1\|554619_554853_+	hypothetical protein	NA	NA	NA	NA
WP_013578232.1\|554849_555296_+	hypothetical protein	NA	NA	NA	NA
WP_013578233.1\|555295_555478_+	hypothetical protein	NA	NA	NA	NA
WP_013578234.1\|555474_555771_+	hypothetical protein	NA	NA	NA	NA
WP_013578235.1\|555810_555993_+	hypothetical protein	NA	NA	NA	NA
WP_013578237.1\|556511_557108_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.6e-56	52.8
WP_013578238.1\|557104_557401_+	hypothetical protein	A0A2I7QXN1	Vibrio_phage	8.1e-25	55.3
WP_013578239.1\|557397_558072_+	antitermination protein	A0A1W6JP37	Morganella_phage	8.6e-30	37.6
WP_013578240.1\|558244_558463_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	5.2e-13	54.5
WP_013578241.1\|558465_558996_+	lysozyme	Q7Y3V3	Yersinia_phage	1.2e-82	82.2
WP_013578242.1\|558988_559522_+	hypothetical protein	H9C185	Pectobacterium_phage	2.7e-34	51.8
WP_013578244.1\|559757_560315_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_013578245.1\|560383_560566_+	hypothetical protein	NA	NA	NA	NA
WP_013578246.1\|560580_561366_+	hypothetical protein	A0A2L1IV66	Escherichia_phage	1.5e-12	38.1
WP_013578247.1\|561572_563192_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	5.8e-274	82.0
WP_013578248.1\|563191_564643_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.7e-190	66.6
WP_148232222.1\|564602_565253_+\|capsid	minor capsid protein	A0A2H4J8F5	uncultured_Caudovirales_phage	4.6e-73	61.1
WP_013578250.1\|565302_566508_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.7e-113	56.1
WP_013578251.1\|566514_566994_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	1.9e-47	59.8
WP_013578252.1\|567006_567951_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	8.4e-132	73.1
WP_013578253.1\|568014_568374_+	hypothetical protein	NA	NA	NA	NA
WP_013578254.1\|568339_568756_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.7e-44	64.4
WP_013578255.1\|568755_569385_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	3.7e-27	41.2
WP_013578256.1\|569371_569758_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	3.2e-45	72.6
WP_013578257.1\|569750_570296_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.5e-45	50.3
WP_013578258.1\|570301_571444_+	DUF3383 family protein	A0A0M4RD26	Salmonella_phage	2.2e-155	73.7
WP_013578259.1\|571453_571894_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	8.9e-60	79.5
WP_013578260.1\|571897_572326_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	3.1e-41	67.2
WP_013578261.1\|572503_574438_+	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	5.9e-225	61.4
WP_013578262.1\|574437_575037_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	2.3e-58	65.3
WP_013578263.1\|575037_575346_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	5.8e-26	55.7
WP_013578264.1\|575345_576371_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	2.0e-94	50.1
WP_013578265.1\|576370_576712_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	3.9e-23	46.6
WP_013578266.1\|576739_577126_+	hypothetical protein	NA	NA	NA	NA
WP_013578267.1\|577198_577951_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	7.2e-94	68.8
WP_013578268.1\|577952_578306_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.9e-45	75.2
WP_013578269.1\|578305_579505_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	1.0e-150	71.4
579253:579270	attR	NA	NA	NA	NA
WP_013578270.1\|579501_580272_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.6e-83	59.4
WP_013578271.1\|580318_582697_+	hypothetical protein	B5TAB2	Burkholderia_phage	7.3e-92	43.2
WP_071882962.1\|582840_583461_+	hypothetical protein	NA	NA	NA	NA
WP_148232223.1\|583599_584271_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.7e-14	52.4
WP_148232227.1\|584324_584702_+\|tail	tail fiber assembly protein	A0A0A0YSY3	Erwinia_phage	3.8e-11	46.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015061

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015061_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015061_1

1979898-1979980

Orphan

I-F

Consensus_repeat	Method
CTGCCGGACAGGCAGCTTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015061_1

>merge|NC_015061|1|1979898-1979980|CRISPRCasFinder
CTGCCGGACAGGCAGCTTAGAAACAATCAGCACGGGGGGATGTAGTCCAGTTATCGTTCACTGCCGCACAGGCAGCTTAGAAA

>NC_015061|1|1|1979898-1979980|CRISPRCasFinder
CTGCCGGACAGGCAGCTTAGAAA	CAATCAGCACGGGGGGATGTAGTCCAGTTATCGTTCA
CTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015061.1\|WP_013575153.1\|1988245_1989295_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_015061.1\|WP_083812228.1\|1965310_1965502_+\|DUF4035-domain-containing-protein	unknown	unknown	gnl\|CDD\|372524
NC_015061.1\|WP_013575138.1\|1968821_1969160_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377570
NC_015061.1\|WP_013575140.1\|1970814_1971534_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|163704
NC_015061.1\|WP_013575155.1\|1989741_1990386_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|236868
NC_015061.1\|WP_013575143.1\|1975380_1976391_+\|hypothetical-protein	unknown	unknown	unknown
NC_015061.1\|WP_013575137.1\|1965533_1968818_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|227606
NC_015061.1\|WP_013575150.1\|1983824_1985519_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_015061.1\|WP_013575146.1\|1980027_1981041_-\|transcriptional-regulator-FtrA	unknown	unknown	gnl\|CDD\|181818
NC_015061.1\|WP_013575151.1\|1985640_1987311_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_015061.1\|WP_013575144.1\|1976466_1977747_+\|tail-fiber-domain-containing-protein	unknown	unknown	gnl\|CDD\|379398
NC_015061.1\|WP_013575147.1\|1981155_1982631_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_015061.1\|WP_013575145.1\|1977907_1978984_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_015061.1\|WP_013575142.1\|1972201_1975381_+\|host-specificity-protein-J	unknown	unknown	gnl\|CDD\|227076
NC_015061.1\|WP_013575141.1\|1971536_1972142_+\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
NC_015061.1\|WP_013575152.1\|1987373_1988246_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|236725
NC_015061.1\|WP_013575149.1\|1983134_1983728_+\|hypothetical-protein	unknown	unknown	unknown
NC_015061.1\|WP_013575154.1\|1989341_1989731_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|170568
NC_015061.1\|WP_013575148.1\|1982829_1983126_+\|hypothetical-protein	unknown	unknown	unknown
NC_015061.1\|WP_083812244.1\|1970065_1970812_+\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|282895

Protein	Function_ID	Function_description	E-value
NC_015061.1\|WP_013575144.1\|1976466_1977747_+\|tail-fiber-domain-containing-protein	gnl\|CDD\|379398	pfam13884, Peptidase_S74, Chaperone of endosialidase. This is the very C-terminal, chaperone, domain of the bacteriophage protein endosialidase. It releases itself, via the serine-lysine dyad at the N-terminus, from the remainder of the end-tail-spike. Cleavage occurs after the threonine which is the final residue of the End-tail-spike family, pfam12219. The endosialidase protein forms homotrimeric molecules in bacteriophages. The catalytic dyad allows this portion of the molecule to be cleaved from the more N-terminal region such that the latter can fold and presumably bind to DNA.	1.11316e-08
NC_015061.1\|WP_013575153.1\|1988245_1989295_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NC_015061.1\|WP_083812228.1\|1965310_1965502_+\|DUF4035-domain-containing-protein	gnl\|CDD\|372524	pfam13227, DUF4035, Protein of unknown function (DUF4035). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 67 and 93 amino acids in length.	4.82703e-16
NC_015061.1\|WP_013575138.1\|1968821_1969160_+\|phage-tail-protein	gnl\|CDD\|377570	pfam05939, Phage_min_tail, Phage minor tail protein. This family consists of a series of phage minor tail proteins and related sequences from several bacterial species.	2.44875e-48
NC_015061.1\|WP_013575155.1\|1989741_1990386_+\|protein-phosphatase-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	7.60403e-139
NC_015061.1\|WP_013575137.1\|1965533_1968818_+\|phage-tail-tape-measure-protein	gnl\|CDD\|227606	COG5281, COG5281, Phage-related minor tail protein [Function unknown].	6.80988e-49
NC_015061.1\|WP_013575146.1\|1980027_1981041_-\|transcriptional-regulator-FtrA	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	8.45281e-160
NC_015061.1\|WP_013575140.1\|1970814_1971534_+\|C40-family-peptidase	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	1.58366e-54
NC_015061.1\|WP_013575147.1\|1981155_1982631_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.31248e-51
NC_015061.1\|WP_013575145.1\|1977907_1978984_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.55914e-26
NC_015061.1\|WP_013575142.1\|1972201_1975381_+\|host-specificity-protein-J	gnl\|CDD\|227076	COG4733, COG4733, Phage-related protein, tail component [Function unknown].	0
NC_015061.1\|WP_013575141.1\|1971536_1972142_+\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	2.58623e-58
NC_015061.1\|WP_013575152.1\|1987373_1988246_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	0
NC_015061.1\|WP_013575150.1\|1983824_1985519_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
NC_015061.1\|WP_013575154.1\|1989341_1989731_+\|chemotaxis-protein-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	5.35691e-83
NC_015061.1\|WP_013575151.1\|1985640_1987311_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.93156e-170
NC_015061.1\|WP_083812244.1\|1970065_1970812_+\|phage-minor-tail-protein-L	gnl\|CDD\|282895	pfam05100, Phage_tail_L, Phage minor tail protein L.	4.46148e-94

>NC_015061.1|WP_013575145.1|1977907_1978984_-|acyltransferase
MKIRLLHLDGIRGLLALTVILGHWLGSRLGWGNVNFSHSYISVDGFFILSGFVLAYVYSDKLKSNSISWSCYSLHRLARLYPLHILTMFFTYLIYSNFYTAYPFEDPLKTAIYNLLLVHGMGLSNSWSWNDPSWSISVEFFCSVLVFPLLLKIRRNITLATISAIGYVLVIAVHQNLMASNDLHLYILSSGFIKSISGMSLGVLVKNAVTENGKLEEKKAFNSLMQLLTLSFISYFIYTKDLVTSYDGIAIIAIAYFIYSTTIHDTILTKILSSYIISGIGKISFSLYLFHTPLMLILDQIPFYAESGFKTQSAIFYTSLIIISVIGYNLFELPSYKYLKKKTDMHYIAKWKNKNAMP
>NC_015061.1|WP_013575144.1|1976466_1977747_+|tail-fiber-domain-containing-protein
MSAGTIALTNNSAAVVGTGTAFTTDLKAGDFIVVIVGGVTYTLGVKTITSATALTLITAYGGPTATGNAWTAVPNATLVGITAQVAADVAKAIRGLNLDKANWQQVFSGTGTITVTLPDGSTYTGPAWSNITTSLADKAAKGANGDITSLTGLTTALSIPQGGTGAMTPATARTALGITPANIGALPTTGGTMVGTVNSTTTAGGFVKLAAGQTGANPINTLGASYLNANQYMTIDVCGTSANIFTRLVTWNTSFKVFGFYDNGNGTCDGTWVGGSDERFKGNIEDFTDGLVATLSCRHVTYNKQDGSREIGVIAQDVERFASCAVVNLGRKEFGNSRVIEDFKGLNTAGFSAAAHGDAITSLFELLDLALNDPDSARAKIEEYKAAIVQPVPLTAEQKIFGGKTIDEMPADTDFTDTDLPAKVAS
>NC_015061.1|WP_013575143.1|1975380_1976391_+|hypothetical-protein
MPFGIAVAGAKSYDMSVSRPLTWIGSLSIGASIGNVNTSSADFSAKCPAGSQLVAIPDNVVAILKTSISAVMQFKSLAISVDNNARTVTATLDLTTNLQSPSFASSSADRPKLVNVYCVYPGEINQGGFGFAVAAGGSFPYVVDSNSGLFLTYSYNGAFTGNLTLPVGANSTVFCYWDDPNVGLIYDEVSRTLKGYVSGNNQSGINIAIKICVFTIKTPEVPAWGIAVRGIDGGISFTSAETPMMYRGNINTPSANGSATAFSTTDQAQQPMVPVMKIGGQLASTNWFHLGMARSGASFFGRPTSLINGGDSTNPNQQVVGYASKPLPFLWATDYF
>NC_015061.1|WP_013575142.1|1972201_1975381_+|host-specificity-protein-J
MATATKIKGRKGGSSSSRTPVEQPDDLQSIAKAKLLIALGEGEFGGGLTGQSIFLDGTPLLNNDGSSNFSGVAWEFRAGTQAQSYIPGLPGTENEISVGTEVKSTVAWTHTFTNTQLSAIRLRLKWPSLFKQEDDGDLVGYSINYTIELQTDGGAFQTVINTAVTGKTTSGYERSHRIDLPPAGTTWTIRLRKITADANSAKIGDAMTIQSYTEVIDAKLRYPNTALLYIEFDSSQFNGSIPQISCEPQGRVIRVPDNYDPITRSYSGTWSGAFKWAWSDNPAWIFYDVVVTDRFGLGNRLTAANIDKWELYQVAQYCDQQVPDGKGGSGTEPRYVCNVYVQSRNDAYTVLRDFAAIFRGMTYWGGNQIVALADMPRDIDYSYTRANVIDGQFSYSSSTTKTRYTTALVSWSDPDNAYADAMEPVFEQDLVTRYGFNQLELTAIGCTRQSEANRKGRWGILTNNKDRVITFGVGLDGMIPQPGYIIAVADEMLSGKVTGGRISSVNGRAITLDRVPDAAAGGRLILNLPSGAAQSRTIQSVSGKIVTVTTAYSETPESESVWVVESDELYAQQYRVLSVADNNDNTFTISAAYHDPDKYARIDTGAIIDERPISVIPPGNQSAPANIQIGSYSVVNQGISVQTMRATWDPTTNAIAYEAQWRRNDGNWVNVPRSSTTSFEVPGIYAGRYLVRVRAINAAEISSGWGYSVEVTLTGKEGNPPKPVGFTATGINWGIQLNWGFPENTSDTLKTEIQYTPNSDQSNPLLLSDVPYPQAIYTQLGLRAGQVFWYRAQLVDKTGNESGYTDWVRGMVNDNADDYLGDIADDFLNSADGDRLTGDIETNIDAILQNALNLNSTIDHQFAQNGEVRADILTVKTTIAEVDQGLADLTTQVQAQIGDVTAALEDKLTAVVDASGASAIYTLKTGVRIGGVMYNAGMSIAVLAQAGQPVVTRVGFNANQFVLMSGSGDTQYSPFAVVNGQVFISDAFIQDGTITNAKIGNFIQSNNYSSSGTGWNLDKNTGFTFKSATAGQGSITLDGRGLRVYDSAGNWKVKVGDLS
>NC_015061.1|WP_013575141.1|1971536_1972142_+|tail-assembly-protein
MQELMTRIELGASLGKIFGKSHYRLIRTVSEAGRALSCTIPGFERYMNNSKKRGITYAVFKGKKNIGEDDLGYPVTGDVIRITPVIIGSKRAGALQTILGAVLVVVGVLVSTFTSWTVAGIGVGGAITSLGASMMAGGVIQMLSPQTAGLASKQDADNQASYAFGGVTNTAAQGYPVPLLYGERRIGGAIISAGIYVEDQQ
>NC_015061.1|WP_013575140.1|1970814_1971534_+|C40-family-peptidase
MRDKTLQAIFEHARQSYPHECCGVVAQKSRVERYFPCANLAANPTEDFHLDPVGYADAEDWGTVISIVHSHPDATTQPSELDKAQCDATELPWHIVSWPEGDFRTIQPRGELPLLERPFVLGHTDCWGLVMSYYRQMHGIELTDYRVDYPWWENDYPDNFYQDCWHECGFREFSGPAMPGDMVIMQVQSNKWNHAGILLEGNMLLHHMYGMLSNRVPYGGYWQERTMKIVRHKDLMKEG
>NC_015061.1|WP_083812244.1|1970065_1970812_+|phage-minor-tail-protein-L
MKVTYSTGETTTLTFGSASSVVLPAASEPWGTRYITKIEYIGGTPVYDESKLPAKSIWWQGNEYSAWPVQIEGIEASTSGSSAQPKLTVANLDGSITALCLAYDDMLQAVVTIHDTLVQYLDARNFAGGNATADATQEKLQVFYIDSKSMETNISVEFTLSSPMDLQGLMIPTRQLHSLCTWCIRGKYRSGDGCDYAGTNYFDKHGNPVSDPSLDVCNGTLNTGCKLRFGANNELPFGGFPGTSLIKS
>NC_015061.1|WP_013575138.1|1968821_1969160_+|phage-tail-protein
MAIETFTWCPRLNAEADTTFRIRKAQFGDGYNQVAGDGLNAKSQEWTLSFTGNESYISAIKNFLDSHAGKKSFLWTPPLESIGFFRCETYKPTALGNGKYNLDATFMQAFKP
>NC_015061.1|WP_013575137.1|1965533_1968818_+|phage-tail-tape-measure-protein
MATLRELIIKISANSSSFQSEISRASRMGADYYKTMEQGGKKAAAATRETQRAISDLSGELASVKSSAAGLAGAFAGAFATHQLIEFADTWNQLNGRLRLASTSADDYATSQRTLMEISQRTGTSLEANSNLYSRIAQALRAAGYASSDVAKVTETVATSLKLSGASTEEASSVITQLSQALGSGVLRGEEFNAIMESGGRLAKLLADGLGTTVGGLRNMANNGELTTDKIIPLLTNVQVLRKEFETLPASISGSAQKVQNAFLAWVGGANDAVGASSSLSSVLDGLAKNINTVANVTGALVGFGIARYFGNMVGSVAQSTAAVISNTAAEVALAQAQVRGAQVSVAAARQTVYRAQQARAAATSIEAQILAERNLAAAQTSLNSAISGRSAAMSQLNNTASVMNRLGGGVLSLLGGWPGLIIAAGTAMYGLYQHTQQVHQEAVSFANNLDEINGKLQTMSVLGLKATAGDARSSLAAQKSDLADLDVQIAKVKDSLKGLDQIQQDYNAHPTVTQLNTFMDQADITAKNIELTDKLNKLEYERENAAAKVASTQKLVNDASDLATKKAIEQAGAVSILKGAYDLLNRSMSATAGATPPQYAGPVVSTANATPQQSTAVEKSRRENELANLSGLQKLHQQYVYEAEDLKLTGALYTTYIYNKDQAAKKDAAAAQAKKDGTAATNAQNKAEREAATVAEQYSRKMADLTVAIEVQKVRATEGEKASERYAASHQAGTKWTDEQRKAIQASSAELAKWNQRADETVRKQREQADALKDLTDAARKYRDEAALTTETAGLSDRQRTRFDETQQVNRVFSKTDQGAQAIAARDAALTELDKKYKATAAAEADWMSGASKGYNNWLEEVSNVSGTVSDGVKSTLDSAFTNVTSMLEGNKVSWKSWGVSILQIIEKVALQMAVVSAMGGGSSSSSGLFGSLVGGVASYFGGSGTSGAAASSSFSSGAYSNLSFNAKGGVYDSPSLNSFSGGVYNTPTMFAFAQGAGVFGEAGPEAIMPLTRAADGSLGVRAVGGGNSSGVSGGAPQVYISIDGNGNSSSKSSDGWEQFGTQIANYVKQLYQQEKAKDLRPGGDIWNAMKGR
>NC_015061.1|WP_083812228.1|1965310_1965502_+|DUF4035-domain-containing-protein
MWIAYDRLSPIGDWRGDVQAAQVATATINAQGGKLSLNDVLLKWGQTEEEKEISDFEEFLGGL
>NC_015061.1|WP_013575146.1|1980027_1981041_-|transcriptional-regulator-FtrA
MQKVDLPLMSSSRHPAAPNRRLVLLAYECLCTFEFGIAVEAFGRADELTGEPLYELAVASVEEGTFGAQGGVRLVVDGGLELLEDAGTIVIPGWRSIHEPASERLIAALQKAHHNGTRIVSICAGSFVLAAAGLLDGKRATAHWNSTDVLAQKFPDVQVEHGMIYVDEGSIITSAGGAAGVDLCLHLIRRDYGIEVANRTARRMVTPPLREGNQAQLIQQPVPRHQTKTLAPLLDDLRGHLNTPLVIDQLARQAGMSRRTFLRRFHDATGTTPGEWMLTVRLEKACALLENGTLSIDRVAEQAGFGSPETLRHHFRQRLGMSPTQWRKGFVERDLVG
>NC_015061.1|WP_013575147.1|1981155_1982631_+|MFS-transporter
MKNTLALMAVCLAALMSGLEISSVPVLSPVLEQELHASFRELQWIMNAYTLACTTVLMATGTLADRYGRKRVFIISITAFGLTSLMCGLAGSAQWLIAGRFLQGLSGGAMLTCLIAILSSQFPQGKARSQAFAAWGITFGFGLGFGPIIGGTLVAWLSWRWVFLIHVVIAVLTLILALKNVVESRDGQAKKLDLGGLITLSVTVLGATFLITQGSSLGWSSVTAGAVLLATAVSAVMFIRIEKRHPHPMFDFSVFRVRAFSGALMGSVGMNFSFWPLMIYLPVYYQGGLGYGSVATGMALLAYTLPTLLMPPLGEKLTTRFGASRLIPLGLFTIGAGFMLMQIAVVHHLSLLPGALLAGIALGLTNTPVTNTTTGSVAANRAGMASGIDISARLITLAINIALMGNLLVAGIAGSLKKVMPAAGDLSLLAERIAGGSAIETLQSGQIAQALTDGFAGILLYGAAGVWVLALLSYLLFNGRGRRKTVSCEPS
>NC_015061.1|WP_013575148.1|1982829_1983126_+|hypothetical-protein
MSFREIKWKVIECLKNGNIEFEARRGIQLKNLLSTGDISPFEVAALIGRASGDHYQVRPYHFDSSIDVHIITVSSAGVPWYIKWYFTEPTSVFISVHH
>NC_015061.1|WP_013575149.1|1983134_1983728_+|hypothetical-protein
MIIYKVGDEKKAMCGVCEAFRIVSYQLRDVPFDDGSGMVKNIIAGVCKTCDSVAVIPFQSVPAIKKQLQIQRKAVETRVPAHMIDLLNMASAELGATPDFVPLLLKYYIHQLASNPESALRLVTLLTSELATGLANKRLSLKGREIGNDIEKLKSLSQIDNTTELLKGVVLMIHHDLLVNPDAHRIAVLKSFVATVA
>NC_015061.1|WP_013575150.1|1983824_1985519_+|Tar-ligand-binding-domain-containing-protein
MFNRMKVVTGIVILLVVFGALQLVSGGLFFKSLKTDKDNFTTSQQIRLQQAEFNASWIYLLQTRNTLNRAGIRFMLDANQMGSGATVKELIDTATKDLQIADQHFASYQKIPADASQNPQFAADAKKQYQVLHDALSELIELIGLGRINDFFEQPTQQYQDNFEKAFVTYIDQNDRLYNEAVKVSENSFTHAIWMLGTVLIVLAIFILLAWTGVQRILIHPLKNIVDTIRKIATGDLTHEIVVKSRNEIGQLADSLKYMQDELIRTVSGVRHGADAIYSGASEISAGNSDLSSRTEQQASALEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVANVVDTMNDIASSSKKITDITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKGLIDDSVSRINTGSVLAESAGETMHDMVNAVTRVTDIMGEITSASDEQSRGIEQVAQAITEMDRVTQQNASLVEESASASAALEEQASLLTQSVAVFTLSQTANNNVRQNPASSARLSLLTPNLSGSKAGKGGAQGTDLTENWETF
>NC_015061.1|WP_013575151.1|1985640_1987311_+|Tar-ligand-binding-domain-containing-protein
MFKHIRVSTCMFLLLIVFFVMQLVNSGLSLQAAHTDKLNFEQISNTAEQRDALSQSWSYLLQTRNTLNRAATRLALKQPQENITQLMSDAKASLKKAEDAYAAFLALPRRTEKAVALTAVNKASYQQLHDMLQTLTELLSSGDMNGFLNGPAQKYQDQFQKDVGDYTAYVSARFGEAQTQTAASYQNVMINTSVALVLLISLTVLALVVTRRILFTPLTIMRGHFDRIGAGDISSPIVAEGRYEIKVMLESLQQMQTSLADTVRTVRHGADTMFSGLKGIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNAENARQATQLARDASNTAEKGGELTGNVVKTMNDIAGSSKKISAITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKALIDESVSRVSQGSQLVESAGNTMDDIVRAVTRVTDIMGEIASASDEQSRGIEQVSIAVTQMDQVTQQNATLVQQAASSTHALEIESENLTRAVSVFRLATTDGAGQRRSGLAQGLTSRQVAQPALLPATAGAVSADNWETF
>NC_015061.1|WP_013575152.1|1987373_1988246_+|protein-glutamate-O-methyltransferase-CheR
MNQPGSPMSADNTSIMAQMIQRLPLSDTHFRRISELIYQRAGIVLADHKREMVYNRLVRRLRILGLNDFTSYMALLENDSNSPEWQAFINALTTNLTAFFREAHHFPILAEHARSRPNSYSVWSTAASTGEEPYSIAMTLSEALGPRMASCRIQASDIDTQVLEKATAGVYRLEELRTLSPQQLQKFFLKGTGPHSGLVRVRPELAQMVAFQQLNLLANQWQLNGPFDAIFCRNVMIYFDKETQEKILRRFVPLLKPGGLMFAGHSENFSQISREFYLRGQTVYGLAKER
>NC_015061.1|WP_013575153.1|1988245_1989295_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MNKIRVLSVDDSALMRQLMTEIINSHPDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEITLRALELGAIDFVTKPQLGIREGMLAYSEMIADKIRTASKARLNKSVNIDQPRILSHTPLLSSEKLIAIGSSTGGTEAIRHVLQPLPPTCPALMITQHMPPGFTRSFADRLNKLCQITVKEAEDGERVLPGHAYIAPGDRHMELTRSGANYQVKLNDGPAVNRHRPSVDVLFRSVAQFAGRNAVGVILTGMGNDGAAGMLEMHRAGAYTLAQNEASCVVFGMPREAIATGGVNEVVDLSQISQRMLAQISAGQALRI
>NC_015061.1|WP_013575154.1|1989341_1989731_+|chemotaxis-protein-CheY
MADPNLRFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDLLKTIRADAALGKLPVLMVTAEAKKENIVAAAQAGASGYVVKPFTAATLEEKLGKIFEKLGM
>NC_015061.1|WP_013575155.1|1989741_1990386_+|protein-phosphatase-CheZ
MAEIPMPANDAATAGEIIARIGQLTRMLRDSMRELGLDQAIAQAAEAIPDARDRLDYVVTMTAQAAERALNCVEAAQPRQNKLESAAKKLDKRWDEWFENPIELSDARELVTDTRSYLKEIPEHTSFTNAQLMEIMMAQDFQDLTGQVIKRMMTVVQEIENQLLMVLMENIPEQQAKAKRENDSLLNGPQLDSNGVGVVASQEQVDDLLDSLGF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

580193 : 651210

Erwinia_phage(53.66%)

capsid,tRNA,tail,head,terminase,transposase,plate,integrase,portal,lysis

attL 608030:608075|attR 643005:643050

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013573870.1\|580193_581198_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013573871.1\|581693_582584_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_013573872.1\|582597_584142_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_013573873.1\|584213_585413_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_013573874.1\|585779_586889_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	3.1e-16	48.3
WP_014411581.1\|586915_588214_+	maltoporin	NA	NA	NA	NA
WP_013573876.1\|588444_589341_+	maltose operon protein MalM	NA	NA	NA	NA
WP_013573877.1\|589578_590418_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013573878.1\|590469_590907_+	DUF2000 domain-containing protein	NA	NA	NA	NA
WP_013573879.1\|590977_591676_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_013573880.1\|591739_592225_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.9e-24	42.3
WP_013573881.1\|592337_593681_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_014411583.1\|593750_596021_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_121020141.1\|596249_597590_+	enterochelin esterase	NA	NA	NA	NA
WP_013573884.1\|597563_598361_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.2e-14	24.3
WP_013573885.1\|598357_599386_-	iron-enterobactin ABC transporter permease	NA	NA	NA	NA
WP_013573886.1\|599388_600390_-	Fe(3+)-siderophore ABC transporter permease	NA	NA	NA	NA
WP_013573887.1\|600389_601358_-	Fe2+-enterobactin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041688942.1\|601699_603223_-	hypothetical protein	NA	NA	NA	NA
WP_148232202.1\|603249_603528_-	hypothetical protein	NA	NA	NA	NA
WP_013573888.1\|603537_604302_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	5.3e-68	62.1
WP_013573889.1\|604748_605114_+	hypothetical protein	NA	NA	NA	NA
WP_013573890.1\|605159_605714_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_013573891.1\|605716_606358_+	type VI secretion system amidase effector protein Tae4	R4JJZ3	Burkholderia_phage	1.0e-56	55.4
WP_013573892.1\|606354_606684_+	hypothetical protein	NA	NA	NA	NA
WP_013573893.1\|607264_607429_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_013573894.1\|607560_607890_-	hypothetical protein	NA	NA	NA	NA
608030:608075	attL	NA	NA	NA	NA
WP_013573895.1\|608377_609217_-	hypothetical protein	NA	NA	NA	NA
WP_013573896.1\|609298_610543_-	hypothetical protein	NA	NA	NA	NA
WP_013573897.1\|610562_611561_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.7e-157	79.9
WP_013573898.1\|611560_612151_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.0e-55	52.7
WP_013573899.1\|612282_612543_+	hypothetical protein	A0A218M4I5	Erwinia_phage	2.3e-23	66.2
WP_013573900.1\|612573_613080_+	phage regulatory CII family protein	F1BUS6	Erwinia_phage	8.1e-41	51.2
WP_013573901.1\|613082_613253_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_013573902.1\|613260_613563_+	hypothetical protein	NA	NA	NA	NA
WP_041689051.1\|613693_613909_+	DUF2732 family protein	F1BUS3	Erwinia_phage	5.0e-08	50.8
WP_013573904.1\|613908_614250_+	DUF5405 family protein	NA	NA	NA	NA
WP_013573905.1\|614242_614467_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.9e-14	50.0
WP_013573906.1\|614546_616790_+	replication endonuclease	S4TTC1	Salmonella_phage	7.1e-238	57.3
WP_083812207.1\|616946_617135_+	hypothetical protein	NA	NA	NA	NA
WP_148232203.1\|617833_618364_+	DUF4065 domain-containing protein	A0A139ZPG5	Marinitoga_camini_virus	1.9e-08	30.3
WP_013573909.1\|618363_618828_+	hypothetical protein	NA	NA	NA	NA
WP_013573910.1\|619133_620051_+	hypothetical protein	NA	NA	NA	NA
WP_013573911.1\|620280_621312_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	1.3e-157	78.9
WP_041689053.1\|621313_623080_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.8e-273	78.5
WP_013573913.1\|623224_624076_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	4.3e-87	61.8
WP_013573914.1\|624122_625187_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	2.4e-143	74.0
WP_013573915.1\|625200_625857_+\|terminase	small terminase subunit	F1BUQ7	Erwinia_phage	1.6e-57	56.5
WP_013573916.1\|625952_626423_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	8.6e-37	52.0
WP_013573917.1\|626422_626626_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	5.9e-19	62.7
WP_013573918.1\|626631_626841_+	hypothetical protein	F1BUQ4	Erwinia_phage	1.5e-09	51.7
WP_013573919.1\|626821_627331_+	lysozyme	A0A218M4K3	Erwinia_phage	2.0e-55	64.5
WP_013573920.1\|627330_627756_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	8.9e-25	46.7
WP_013573921.1\|627851_628319_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	5.5e-52	65.8
WP_013573922.1\|628311_628761_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	3.7e-45	67.6
WP_013573923.1\|628849_629797_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_013573924.1\|629879_630524_+\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	4.3e-63	59.4
WP_013573926.1\|630658_631009_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	9.9e-38	66.4
WP_013573927.1\|631012_631921_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.4e-120	75.8
WP_013573928.1\|631913_632441_+\|tail	phage tail protein I	Q37841	Escherichia_phage	2.4e-75	77.1
WP_013573930.1\|635258_635714_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	3.3e-25	49.2
WP_013573931.1\|635843_637013_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.7e-179	78.1
WP_013573932.1\|637027_637537_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.4e-64	70.3
WP_013573933.1\|637595_637877_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.0e-24	57.8
WP_013573934.1\|637909_638029_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	1.7e-10	74.4
WP_013573935.1\|638021_640496_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	1.4e-202	64.6
WP_013573936.1\|640508_640979_+\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	6.0e-46	61.7
WP_013573937.1\|640975_642139_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	2.0e-143	66.5
WP_013573938.1\|642153_642489_-	hypothetical protein	NA	NA	NA	NA
WP_013573939.1\|642594_642816_+	DNA-binding transcriptional regulator	F1BUT0	Erwinia_phage	1.2e-20	67.1
WP_013573940.1\|643222_643726_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
643005:643050	attR	NA	NA	NA	NA
WP_041672991.1\|644004_644496_+	hypothetical protein	NA	NA	NA	NA
WP_013573943.1\|644576_645179_+	hypothetical protein	NA	NA	NA	NA
WP_013573944.1\|645212_645680_+	hypothetical protein	NA	NA	NA	NA
WP_013573945.1\|645740_647579_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_013573946.1\|647781_649530_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-75	39.5
WP_001144069.1\|649665_649881_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_013573947.1\|650196_651210_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.3e-110	60.1

DBSCAN-SWA_2

708933 : 795680

Erwinia_phage(30.56%)

tRNA,tail,transposase,plate,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013573996.1\|708933_710256_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_173362080.1\|710323_711124_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013573998.1\|711328_712882_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_173362081.1\|712890_713577_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_013574000.1\|713678_714350_+	7-carboxy-7-deazaguanine synthase QueE	A0A2I7S8X1	Vibrio_phage	1.2e-12	35.8
WP_013574001.1\|714363_714723_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_013574002.1\|714892_715897_+	hypothetical protein	NA	NA	NA	NA
WP_013574003.1\|716242_718045_+	NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA	NA	NA	NA
WP_013574004.1\|718072_719809_+	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
WP_013574005.1\|719833_720571_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_013574006.1\|720730_721768_-	aminopeptidase	NA	NA	NA	NA
WP_013574007.1\|722019_723444_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013574008.1\|723454_724363_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_013574009.1\|724376_725804_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	4.6e-33	27.6
WP_013574010.1\|725805_726429_+	adenylyl-sulfate kinase	A0A1B0XTK9	Freshwater_phage	1.1e-07	39.1
WP_173362082.1\|726563_726869_+	DUF3561 family protein	NA	NA	NA	NA
WP_013574012.1\|727036_727357_+	cell division protein FtsB	NA	NA	NA	NA
WP_013574013.1\|727359_728079_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_013574014.1\|728078_728552_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_041673186.1\|728574_729621_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_013574016.1\|729601_730366_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.8e-69	53.7
WP_013574017.1\|730355_730982_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-37	51.2
WP_013574018.1\|731224_732247_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.2e-05	35.2
WP_013574019.1\|732298_733285_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.1e-33	33.1
WP_013574020.1\|733383_735939_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.9e-25	20.4
WP_013574021.1\|736361_739022_+	hypothetical protein	NA	NA	NA	NA
WP_013574022.1\|739175_740279_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_013574023.1\|740440_740935_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.7e-27	48.7
WP_013574024.1\|741042_742107_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.2e-111	61.6
WP_173362083.1\|742350_742917_+	recombination regulator RecX	NA	NA	NA	NA
WP_013574026.1\|743055_745683_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.1e-79	38.5
WP_013574027.1\|745939_746125_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_013574028.1\|747156_747723_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_013574029.1\|747719_748148_+	DedA family protein	NA	NA	NA	NA
WP_013574030.1\|748233_749805_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_013574031.1\|749962_750478_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_013574032.1\|750547_751837_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_013574033.1\|751853_752645_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_013574034.1\|752809_754171_+	signal recognition particle protein	NA	NA	NA	NA
WP_015689395.1\|754349_754598_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_013574036.1\|754616_755165_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_013574037.1\|755232_756006_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_013574038.1\|756054_756402_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_013574039.1\|756494_756674_-	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	6.4e-17	75.5
WP_013574040.1\|756738_757839_-\|tail	tail protein	Q6K1G4	Salmonella_virus	1.7e-83	43.6
WP_013574041.1\|757841_758312_-\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	1.3e-37	50.0
WP_013574042.1\|758308_759940_-\|tail	phage tail tape measure protein	F1BUT7	Erwinia_phage	1.5e-16	28.9
WP_013574043.1\|759932_760067_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	6.7e-11	78.9
WP_013574044.1\|760087_760375_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	4.3e-23	60.9
WP_013574045.1\|760434_760944_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	3.1e-64	68.4
WP_013574046.1\|760958_762128_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	8.4e-182	80.5
WP_013574047.1\|762298_763258_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.7e-119	68.5
WP_013574048.1\|763247_763862_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-80	70.9
WP_013574049.1\|763854_764763_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.5e-117	73.5
WP_013574050.1\|764768_765119_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	9.9e-38	63.8
WP_013574051.1\|765115_765757_-\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	6.4e-67	60.4
WP_013574052.1\|765838_766300_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-23	43.3
WP_013574053.1\|766392_766821_-\|lysis	lysis regulatory protein	F1BUQ1	Erwinia_phage	1.9e-06	48.3
WP_013574054.1\|766821_767331_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-55	61.1
WP_013574055.1\|767311_767533_-	hypothetical protein	NA	NA	NA	NA
WP_013574056.1\|767523_767727_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	8.6e-18	56.7
WP_013574057.1\|767938_768133_-	hypothetical protein	NA	NA	NA	NA
WP_013574058.1\|768281_770174_-	replication endonuclease	Q7Y4B8	Escherichia_virus	4.8e-179	50.5
WP_013574059.1\|770267_770489_-	TraR/DksA C4-type zinc finger protein	A0A1S6L007	Salmonella_phage	4.6e-09	44.3
WP_013574060.1\|770488_770764_-	DUF5347 family protein	NA	NA	NA	NA
WP_013574061.1\|770896_771487_+	helix-turn-helix domain-containing protein	Q6K1G0	Salmonella_virus	1.8e-52	51.3
WP_013574062.1\|771775_772852_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	3.9e-85	48.3
WP_013574063.1\|772858_773980_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_013574064.1\|774057_775212_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_013574065.1\|775522_775867_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_013574066.1\|776148_776883_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_013574067.1\|777013_777991_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_013574068.1\|777990_778728_+	polyphenol oxidase	NA	NA	NA	NA
WP_013574069.1\|778858_781432_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.3e-126	35.2
WP_013574070.1\|787398_788697_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.9e-42	30.3
WP_013574071.1\|788886_790242_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_013574072.1\|790326_793047_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013574073.1\|793078_793783_-	DTW domain-containing protein	NA	NA	NA	NA
WP_013574074.1\|793912_794332_-	thioredoxin TrxC	A0A191VYI2	Roseobacter_phage	4.5e-13	34.4
WP_013574075.1\|794576_795680_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1265617 : 1274330

Enterobacteria_phage(42.86%)

integrase

attL 1260714:1260729|attR 1272365:1272380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1260714:1260729	attL	NA	NA	NA	NA
WP_013574514.1\|1265617_1268293_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.6e-109	33.4
WP_013574515.1\|1268383_1269370_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	3.0e-132	67.4
WP_013574516.1\|1269408_1269675_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	1.7e-13	50.7
WP_013574517.1\|1269667_1269871_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_071882950.1\|1270069_1270276_+	DUF3950 domain-containing protein	A0A0P0ZCA1	Stx2-converting_phage	1.0e-05	33.8
WP_013574519.1\|1270325_1270544_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_013574520.1\|1270944_1272180_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.0e-72	37.3
WP_013574521.1\|1272522_1273440_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.8e-102	66.0
1272365:1272380	attR	NA	NA	NA	NA
WP_013574522.1\|1273688_1274330_+	cytochrome c biogenesis heme-transporting ATPase CcmA	W5SAS9	Pithovirus	1.7e-06	25.1

DBSCAN-SWA_4

1576201 : 1676202

Erwinia_phage(32.14%)

capsid,tRNA,tail,head,terminase,plate,integrase,protease,portal,lysis

attL 1568821:1568838|attR 1672609:1672626

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1568821:1568838	attL	NA	NA	NA	NA
WP_013574769.1\|1576201_1576522_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.1e-14	46.1
WP_013574770.1\|1576549_1578832_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.7e-167	41.9
WP_002211347.1\|1579053_1579272_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_013574771.1\|1579365_1580100_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_041689066.1\|1580151_1581873_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A1V0SJ29	Klosneuvirus	1.0e-18	32.1
WP_013574773.1\|1581875_1583642_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.4e-25	24.6
WP_013574774.1\|1583790_1584759_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.8e-63	44.8
WP_013574775.1\|1585491_1585986_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_013574776.1\|1586106_1589553_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	9.3e-88	48.8
WP_013574777.1\|1589747_1590359_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_013574778.1\|1590366_1591710_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.8e-78	38.7
WP_013574779.1\|1591816_1593109_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.2e-93	43.8
WP_013574780.1\|1593308_1595765_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.1e-214	48.3
WP_013574781.1\|1595841_1598289_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-215	49.3
WP_013574782.1\|1598300_1598918_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.3e-77	60.1
WP_013574783.1\|1598919_1599777_+	dimethyl sulfoxide reductase anchor subunit family protein	NA	NA	NA	NA
WP_013574784.1\|1599846_1600455_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	4.4e-25	36.8
WP_013574785.1\|1600454_1601027_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_013574786.1\|1601160_1602306_+	MFS transporter	NA	NA	NA	NA
WP_015689580.1\|1602411_1603152_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	9.5e-22	26.8
WP_013574788.1\|1603249_1604236_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LA05	Escherichia_phage	5.1e-148	76.5
WP_013574789.1\|1604338_1604638_-	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	3.9e-35	70.7
WP_013574790.1\|1604744_1605119_+	hypothetical protein	Q1JS28	Enterobacteria_phage	3.8e-35	66.4
WP_013574791.1\|1605297_1605798_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	7.7e-60	63.9
WP_013574792.1\|1605857_1606100_+	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	2.3e-09	55.0
WP_013574793.1\|1606099_1606318_+	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	3.0e-16	54.9
WP_013574794.1\|1606320_1606599_+	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	2.5e-20	53.6
WP_013574795.1\|1606606_1608889_+	replication endonuclease	S4TTC1	Salmonella_phage	8.8e-252	58.4
WP_013574796.1\|1609201_1610293_+	hypothetical protein	NA	NA	NA	NA
WP_013574797.1\|1610289_1611528_+	hypothetical protein	NA	NA	NA	NA
WP_013574798.1\|1611524_1612163_+	hypothetical protein	NA	NA	NA	NA
WP_013574800.1\|1613297_1615835_+	ATP-binding protein	NA	NA	NA	NA
WP_013574801.1\|1615910_1616942_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	8.8e-159	79.4
WP_013574802.1\|1616944_1618711_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.2e-269	76.7
WP_013574803.1\|1618855_1619707_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	2.2e-86	61.5
WP_013574804.1\|1619755_1620820_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	1.8e-143	73.7
WP_013574805.1\|1620831_1621488_+\|terminase	small terminase subunit	F1BUQ7	Erwinia_phage	3.4e-55	54.5
WP_013574806.1\|1621583_1622054_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	8.6e-37	52.0
WP_013574807.1\|1622053_1622257_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.0e-18	64.2
WP_013574808.1\|1622262_1622472_+	hypothetical protein	F1BUQ4	Erwinia_phage	1.1e-07	50.0
WP_013574809.1\|1622452_1622962_+	lysozyme	A0A218M4K3	Erwinia_phage	3.4e-55	63.3
WP_013574810.1\|1622961_1623405_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	1.4e-25	46.7
WP_013573921.1\|1623482_1623950_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	5.5e-52	65.8
WP_013574811.1\|1623942_1624389_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	2.1e-45	68.0
WP_013574812.1\|1624469_1625342_+	hypothetical protein	NA	NA	NA	NA
WP_013574813.1\|1625458_1626100_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.5e-65	58.1
WP_013574814.1\|1626096_1626447_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	9.9e-38	66.4
WP_013574815.1\|1626450_1627359_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	7.1e-120	74.8
WP_013574816.1\|1627351_1627879_+\|tail	phage tail protein I	Q37841	Escherichia_phage	1.4e-75	77.1
WP_013574817.1\|1627888_1630405_+\|tail	phage tail protein	Q858V4	Yersinia_virus	1.9e-74	40.5
WP_013574818.1\|1630414_1630870_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.5e-25	49.2
WP_013574819.1\|1631032_1632202_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.9e-179	77.9
WP_013574820.1\|1632215_1632725_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.8e-65	70.9
WP_013574821.1\|1632783_1633065_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.5e-24	66.7
WP_013574822.1\|1633097_1633217_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	3.6e-08	64.1
WP_148232213.1\|1633233_1635801_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	2.0e-79	35.3
WP_013574824.1\|1635811_1636297_+\|tail	phage tail protein	F1BUT6	Erwinia_phage	3.2e-50	66.2
WP_013574825.1\|1636293_1637457_+	phage late control D family protein	Q6K1G4	Salmonella_virus	1.4e-141	66.4
WP_013574826.1\|1637486_1637735_-	hypothetical protein	NA	NA	NA	NA
WP_013573939.1\|1637897_1638119_+	DNA-binding transcriptional regulator	F1BUT0	Erwinia_phage	1.2e-20	67.1
WP_013574828.1\|1638634_1640917_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-156	40.9
WP_013574829.1\|1640992_1641850_-	formate transporter FocA	NA	NA	NA	NA
WP_015689618.1\|1642348_1644112_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_013574831.1\|1644437_1645523_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.4e-84	46.1
WP_013574832.1\|1645627_1646911_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_013574833.1\|1647107_1647806_+	(d)CMP kinase	NA	NA	NA	NA
WP_015689619.1\|1647962_1649636_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_013574835.1\|1649696_1649981_+	integration host factor subunit beta	A7KV42	Bacillus_phage	7.1e-10	40.2
WP_013574836.1\|1650252_1652499_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_013574837.1\|1652537_1654286_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	1.3e-56	29.4
WP_013574838.1\|1654282_1655272_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_013574839.1\|1655621_1655831_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.7e-19	68.8
WP_013574840.1\|1656092_1656305_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-05	42.6
WP_013574841.1\|1656400_1657624_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013574842.1\|1658005_1658188_+	hypothetical protein	NA	NA	NA	NA
WP_013574843.1\|1658184_1658943_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_013574844.1\|1659138_1660032_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_013574845.1\|1660033_1660813_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_013574846.1\|1660968_1661754_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_013574847.1\|1661750_1663073_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_013574848.1\|1663053_1663785_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_013574849.1\|1663781_1668230_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_013574850.1\|1668591_1670442_+	L,D-transpeptidase	NA	NA	NA	NA
WP_013574851.1\|1670621_1671173_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	4.9e-07	32.6
WP_013574852.1\|1671224_1671872_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013574853.1\|1671957_1673148_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
1672609:1672626	attR	NA	NA	NA	NA
WP_121019630.1\|1673389_1674499_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.3e-109	57.0
WP_013574855.1\|1674801_1676202_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.4e-82	36.9

DBSCAN-SWA_5

1903509 : 1915075

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013575064.1\|1903509_1904151_+	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	37.9
WP_013575065.1\|1904188_1904770_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.5e-30	41.6
WP_013575066.1\|1904813_1906664_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_013575067.1\|1906742_1908332_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.2e-39	43.6
WP_013575068.1\|1908794_1909682_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.2e-60	46.9
WP_148232214.1\|1910158_1911226_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.6e-100	53.3
WP_013575070.1\|1911245_1912115_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.6e-108	65.6
WP_013575071.1\|1912534_1913461_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L5H6	Tupanvirus	1.4e-14	25.1
WP_013575072.1\|1913567_1914335_+	ABC transporter permease	NA	NA	NA	NA
WP_013575073.1\|1914334_1915075_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-07	22.4

DBSCAN-SWA_6

1939444 : 2008619

Enterobacteria_phage(30.95%)

capsid,tail,head,terminase,integrase,protease,portal,lysis

attL 1935844:1935861|attR 2003393:2003410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1935844:1935861	attL	NA	NA	NA	NA
WP_013575096.1\|1939444_1940590_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	1.9e-82	45.9
WP_013575097.1\|1940570_1940828_-	hypothetical protein	NA	NA	NA	NA
WP_013575098.1\|1941166_1941994_-	YfdQ family protein	U5P439	Shigella_phage	9.4e-87	60.0
WP_013575099.1\|1942029_1942401_-	hypothetical protein	Q8HAA1	Salmonella_phage	6.3e-43	69.9
WP_013575100.1\|1942470_1942626_-	DUF3927 family protein	NA	NA	NA	NA
WP_013575101.1\|1942622_1943048_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	3.4e-56	79.4
WP_013575102.1\|1943518_1944187_-	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.9e-98	76.5
WP_041689070.1\|1944275_1944491_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	1.8e-18	71.4
WP_013575104.1\|1944519_1945053_+	hypothetical protein	NA	NA	NA	NA
WP_013575106.1\|1945258_1946266_+	conserved phage C-terminal domain-containing protein	U5P0A0	Shigella_phage	1.9e-33	75.5
WP_013575107.1\|1946262_1947204_+	adenine methyltransferase	A0A248SKY3	Klebsiella_phage	1.0e-73	64.5
WP_013575108.1\|1947200_1949198_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	5.4e-229	57.1
WP_013575109.1\|1949194_1949356_+	hypothetical protein	NA	NA	NA	NA
WP_013575110.1\|1949346_1949721_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.7e-33	56.9
WP_013575111.1\|1949735_1950431_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	1.7e-57	54.6
WP_013575112.1\|1950427_1951441_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-71	40.1
WP_013575113.1\|1951457_1951856_+	antitermination protein Q	B6SCY2	Bacteriophage	3.2e-32	57.5
WP_013575115.1\|1952512_1952764_+	hypothetical protein	NA	NA	NA	NA
WP_013575116.1\|1953367_1953637_+	hypothetical protein	A0A1V0E5R8	Salmonella_phage	2.5e-25	68.2
WP_173362090.1\|1953671_1954169_+	lysozyme	Q7Y3V3	Yersinia_phage	1.3e-78	83.0
WP_013575118.1\|1954161_1954668_+\|lysis	lysis protein	H2DE61	Erwinia_phage	2.7e-12	35.5
WP_013575119.1\|1954768_1954978_+	hypothetical protein	NA	NA	NA	NA
WP_013575120.1\|1955049_1955547_+	hypothetical protein	NA	NA	NA	NA
WP_013575122.1\|1955859_1956279_+	glycosyltransferase	K7PKP3	Enterobacterial_phage	2.5e-35	67.9
WP_013575124.1\|1956601_1956955_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.3e-48	75.9
WP_013575125.1\|1957099_1957573_+\|terminase	phage terminase small subunit P27 family	A0A1W6JP17	Morganella_phage	9.2e-55	68.2
WP_013575126.1\|1957576_1959307_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	4.7e-274	76.9
WP_013575127.1\|1959306_1960611_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.1e-201	79.0
WP_013575128.1\|1960621_1961470_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.8e-113	75.5
WP_013575129.1\|1961479_1962694_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	6.0e-199	89.3
WP_013575130.1\|1962753_1963098_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.6e-35	61.1
WP_013575131.1\|1963108_1963447_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	9.3e-33	63.1
WP_013575132.1\|1963443_1963890_+	HK97 gp10 family phage protein	K7P6I1	Enterobacteria_phage	9.3e-49	67.8
WP_013575133.1\|1963886_1964234_+	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	1.1e-23	50.0
WP_013575134.1\|1964289_1964760_+	hypothetical protein	K7P6W3	Enterobacteria_phage	2.2e-69	89.2
WP_013575135.1\|1964816_1965215_+\|tail	phage tail protein	K7P7C2	Enterobacteria_phage	3.7e-41	69.4
WP_083812228.1\|1965310_1965502_+	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	8.9e-17	57.1
WP_013575137.1\|1965533_1968818_+\|tail	phage tail tape measure protein	A0A220NRN7	Escherichia_phage	0.0e+00	73.6
WP_013575138.1\|1968821_1969160_+\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	1.1e-49	75.9
WP_083812244.1\|1970065_1970812_+\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.0e-95	85.6
WP_013575140.1\|1970814_1971534_+	C40 family peptidase	K7PJV6	Enterobacteria_phage	1.7e-124	83.5
WP_013575141.1\|1971536_1972142_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	7.4e-73	73.1
WP_013575142.1\|1972201_1975381_+	host specificity protein J	O64335	Escherichia_phage	0.0e+00	80.5
WP_013575143.1\|1975380_1976391_+	hypothetical protein	NA	NA	NA	NA
WP_013575144.1\|1976466_1977747_+\|tail	tail fiber domain-containing protein	S4TSP4	Salmonella_phage	3.6e-45	52.2
WP_013575145.1\|1977907_1978984_-	acyltransferase	NA	NA	NA	NA
WP_013575146.1\|1980027_1981041_-	transcriptional regulator FtrA	NA	NA	NA	NA
WP_013575147.1\|1981155_1982631_+	MFS transporter	NA	NA	NA	NA
WP_013575148.1\|1982829_1983126_+	hypothetical protein	NA	NA	NA	NA
WP_013575149.1\|1983134_1983728_+	hypothetical protein	NA	NA	NA	NA
WP_013575150.1\|1983824_1985519_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	8.8e-15	29.6
WP_013575151.1\|1985640_1987311_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-12	28.8
WP_013575152.1\|1987373_1988246_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_013575153.1\|1988245_1989295_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	6.1e-06	32.8
WP_013575154.1\|1989341_1989731_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	1.0e-06	30.4
WP_013575155.1\|1989741_1990386_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_013575156.1\|1990711_1991866_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_013575157.1\|1991858_1993943_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_013575158.1\|1993944_1994361_+	flagellar protein FlhE	NA	NA	NA	NA
WP_013575159.1\|1994647_1995157_-	hypothetical protein	NA	NA	NA	NA
WP_013575160.1\|1995623_1996076_-	flagellar protein FlgN	NA	NA	NA	NA
WP_013575161.1\|1996125_1996428_-	anti-sigma-28 factor FlgM	NA	NA	NA	NA
WP_013575162.1\|1996587_1997370_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_013575163.1\|1997483_1997894_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_013575164.1\|1997900_1998305_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_013575165.1\|1998316_1999021_+	flagellar hook assembly protein FlgD	NA	NA	NA	NA
WP_013575166.1\|1999098_2000343_+	flagellar hook protein FlgE	NA	NA	NA	NA
WP_013575167.1\|2000377_2001133_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA
WP_013575168.1\|2001154_2001937_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_071823641.1\|2002064_2002769_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_013575170.1\|2002779_2003886_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
2003393:2003410	attR	NA	NA	NA	NA
WP_013575171.1\|2003885_2004836_+	flagellar assembly peptidoglycan hydrolase FlgJ	Q9ZXE4	Bacillus_phage	4.5e-16	37.2
WP_013575172.1\|2004976_2006629_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_013575173.1\|2006656_2007619_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_013575174.1\|2007923_2008619_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

DBSCAN-SWA_7

2756390 : 2780188

Cronobacter_phage(82.61%)

capsid,tail,head,terminase,plate,holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083812237.1\|2756390_2756831_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.4e-20	44.1
WP_013575830.1\|2759540_2760128_-	hypothetical protein	F1BUK5	Cronobacter_phage	6.0e-80	72.8
WP_013575831.1\|2760120_2761305_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	2.6e-162	73.4
WP_013575832.1\|2761297_2761630_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	9.1e-33	71.7
WP_013575833.1\|2761629_2763939_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.8e-167	45.6
WP_013575834.1\|2764126_2764384_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.7e-18	55.8
WP_041688993.1\|2764504_2764876_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.3e-21	53.5
WP_013575836.1\|2764875_2765217_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	9.9e-43	78.2
WP_013575837.1\|2765213_2765510_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.0e-19	55.3
WP_013575838.1\|2765523_2765976_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.6e-51	65.1
WP_013575839.1\|2765978_2767106_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	8.7e-144	69.8
WP_013575840.1\|2767115_2767805_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.6e-78	65.9
WP_013575841.1\|2767801_2768308_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	4.0e-40	49.4
WP_013575842.1\|2768304_2768757_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.0e-46	61.3
WP_013575843.1\|2768850_2769042_-	hypothetical protein	NA	NA	NA	NA
WP_013575844.1\|2769038_2769752_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.8e-73	60.3
WP_013575845.1\|2769754_2770789_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-137	75.4
WP_013575846.1\|2770855_2771695_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.3e-43	52.2
WP_013575847.1\|2771835_2773623_+	hypothetical protein	F1BUM5	Cronobacter_phage	6.2e-253	71.5
WP_013575848.1\|2773619_2774651_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.1e-136	66.2
WP_013575849.1\|2774647_2774962_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	4.3e-24	54.9
WP_013575850.1\|2774944_2775151_-	hypothetical protein	NA	NA	NA	NA
WP_013575851.1\|2775253_2777410_-	replication endonuclease	F1BUM9	Cronobacter_phage	5.3e-222	60.1
WP_013575852.1\|2777410_2777671_-	DUF2732 family protein	NA	NA	NA	NA
WP_013575853.1\|2777744_2778173_-	hypothetical protein	NA	NA	NA	NA
WP_013575854.1\|2778180_2778507_-	hypothetical protein	NA	NA	NA	NA
WP_013575855.1\|2778509_2778713_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_013575856.1\|2778722_2779232_-	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	1.9e-42	51.5
WP_013575857.1\|2779264_2779486_-	hypothetical protein	NA	NA	NA	NA
WP_013575858.1\|2779627_2780188_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.5e-32	40.3

DBSCAN-SWA_8

3066407 : 3074889

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013576123.1\|3066407_3068390_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	2.8e-20	24.6
WP_013576124.1\|3068389_3069370_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	1.1e-33	32.7
WP_013576125.1\|3069369_3070512_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L0G1	Tupanvirus	5.0e-30	28.9
WP_013576127.1\|3070859_3071609_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	29.8
WP_013576128.1\|3071628_3072180_-	glutathione peroxidase	A0A1S7DMQ0	Molluscum_contagiosum_virus	9.2e-14	41.6
WP_013576129.1\|3072252_3073260_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_013576130.1\|3073413_3073812_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_013576131.1\|3074083_3074242_+	hypothetical protein	NA	NA	NA	NA
WP_004089944.1\|3074592_3074889_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0

DBSCAN-SWA_9

3881726 : 3951973

Acanthocystis_turfacea_chlorella_virus(11.11%)

coat,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013576221.1\|3881726_3882761_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013576869.1\|3883819_3884908_-	GDP-mannose 4,6-dehydratase	A7KA64	Acanthocystis_turfacea_chlorella_virus	3.1e-77	43.8
WP_013576870.1\|3885059_3886499_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_013576871.1\|3886668_3887823_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_013576872.1\|3887908_3889288_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.9e-34	29.7
WP_013576873.1\|3889302_3890724_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.0e-45	28.2
WP_013576874.1\|3890874_3892098_-	glycosyltransferase	NA	NA	NA	NA
WP_013576875.1\|3892313_3893309_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_013576876.1\|3893323_3894481_-	glycosyltransferase	NA	NA	NA	NA
WP_013576877.1\|3894653_3896825_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_013576878.1\|3896845_3897280_-	protein-tyrosine-phosphatase	NA	NA	NA	NA
WP_041689018.1\|3897282_3898416_-	polysaccharide export protein	NA	NA	NA	NA
WP_013576880.1\|3898513_3899944_-	undecaprenyl-phosphate galactose phosphotransferase WbaP	NA	NA	NA	NA
WP_041689113.1\|3900114_3902205_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_013576882.1\|3902204_3902948_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_013576883.1\|3902944_3903601_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_013576884.1\|3903675_3903891_-	hypothetical protein	NA	NA	NA	NA
WP_013576885.1\|3904179_3904866_-	EAL domain-containing protein	NA	NA	NA	NA
WP_013576886.1\|3904940_3905537_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013576888.1\|3906524_3909236_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.4e-70	26.8
WP_013576889.1\|3909526_3910612_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013576890.1\|3910611_3913677_+	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	1.0e-21	21.1
WP_013576891.1\|3913673_3914639_+	acyltransferase family protein	NA	NA	NA	NA
WP_013576892.1\|3914702_3914957_-	hypothetical protein	NA	NA	NA	NA
WP_013576894.1\|3915306_3915963_-	hypothetical protein	NA	NA	NA	NA
WP_013576895.1\|3916093_3916642_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013576896.1\|3916740_3917409_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_013576897.1\|3917405_3917729_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_013576898.1\|3917779_3919141_-	APC family permease	NA	NA	NA	NA
WP_013576899.1\|3919748_3920555_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013576900.1\|3920541_3921180_-	LysE family transporter	NA	NA	NA	NA
WP_013576901.1\|3921176_3922469_-	hypothetical protein	NA	NA	NA	NA
WP_013576902.1\|3922624_3923284_+	DUF1345 domain-containing protein	NA	NA	NA	NA
WP_013576903.1\|3923438_3924257_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013576904.1\|3924256_3925081_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_013576905.1\|3925125_3926268_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_013576906.1\|3926356_3928141_-	chitinase	NA	NA	NA	NA
WP_158307034.1\|3928430_3928676_-	hypothetical protein	NA	NA	NA	NA
WP_013576908.1\|3928962_3929904_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013576909.1\|3930046_3930589_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	8.7e-57	57.2
WP_013576910.1\|3930611_3931058_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013576911.1\|3931504_3933586_+	chitinase	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	2.9e-36	27.8
WP_013576912.1\|3933647_3934544_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013576913.1\|3934661_3936158_+	MFS transporter	NA	NA	NA	NA
WP_013576914.1\|3936572_3937118_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013576915.1\|3937180_3937699_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_013576916.1\|3937707_3938253_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013576917.1\|3938272_3939070_+	molecular chaperone	NA	NA	NA	NA
WP_013576918.1\|3939088_3941536_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_013576919.1\|3941532_3942501_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_013576920.1\|3942557_3943037_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_013576921.1\|3943146_3943800_-	DNA oxidative demethylase AlkB	A0A0H3Y8P5	Apricot_vein_clearing_associated_virus	7.1e-05	33.7
WP_013576922.1\|3943937_3944756_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_013576923.1\|3944817_3946155_-	glucarate dehydratase	NA	NA	NA	NA
WP_013576924.1\|3946183_3947527_-	glucarate dehydratase	NA	NA	NA	NA
WP_013576925.1\|3947523_3948897_-	MFS transporter	NA	NA	NA	NA
WP_013576926.1\|3949123_3950284_-	CdaR family transcriptional regulator	NA	NA	NA	NA
WP_013576927.1\|3950521_3951973_-\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	3.9e-27	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_015063

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18635 : 78431

Escherichia_phage(26.67%)

protease,transposase,integrase

attL 31323:31337|attR 79938:79952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013573449.1\|18635_19640_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013578325.1\|19748_19982_-	hypothetical protein	NA	NA	NA	NA
WP_013578326.1\|20019_20415_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_013578327.1\|21380_22346_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	9.3e-70	48.3
WP_013578328.1\|22354_23554_-	AAA family ATPase	A0A077SL49	Escherichia_phage	2.5e-173	75.0
WP_013578329.1\|23883_24144_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_013578330.1\|24140_24386_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_013578331.1\|24800_25808_-	replication initiation protein	NA	NA	NA	NA
WP_013578332.1\|26736_27372_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.3e-75	67.3
WP_013578333.1\|27365_27626_+	hypothetical protein	A0A222YZA7	Escherichia_phage	1.2e-11	56.3
WP_013578334.1\|27840_28632_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-30	62.3
WP_013578335.1\|29182_29968_-	hypothetical protein	NA	NA	NA	NA
WP_041689225.1\|30168_30351_+	response regulator transcription factor	NA	NA	NA	NA
WP_013578336.1\|30773_31391_+	type 1 fimbrial protein	NA	NA	NA	NA
31323:31337	attL	NA	NA	NA	NA
WP_013578337.1\|31471_32173_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_013578338.1\|32221_34879_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_148232234.1\|34918_35500_+	fimbrial protein	NA	NA	NA	NA
WP_013578340.1\|35525_36080_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_013578341.1\|36177_36963_+	hypothetical protein	NA	NA	NA	NA
WP_013578342.1\|38056_40657_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	1.8e-91	46.4
WP_013578343.1\|40769_41150_+	hypothetical protein	NA	NA	NA	NA
WP_013578345.1\|41812_42217_+	DUF4354 family protein	NA	NA	NA	NA
WP_148232240.1\|42530_43295_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013578347.1\|43287_43773_+	hypothetical protein	NA	NA	NA	NA
WP_013578348.1\|44699_44936_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_013578349.1\|45124_45427_+	hypothetical protein	NA	NA	NA	NA
WP_013578350.1\|45646_46027_+	DUF4354 family protein	NA	NA	NA	NA
WP_013578351.1\|47511_50913_+	hypothetical protein	NA	NA	NA	NA
WP_041689228.1\|51054_52542_+	hypothetical protein	A0A1W5K0N1	Bacteriophage	6.7e-67	37.4
WP_052300796.1\|52499_54746_+	RHS repeat protein	A0A1W5K0N1	Bacteriophage	3.5e-168	47.7
WP_052300797.1\|55043_56384_+	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	1.3e-69	69.3
WP_013578353.1\|56517_57738_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	6.9e-70	61.9
WP_101377519.1\|58302_59476_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.7e-135	72.8
WP_083812251.1\|59560_60811_+	AAA family ATPase	NA	NA	NA	NA
WP_013578356.1\|60795_61833_+	AAA family ATPase	NA	NA	NA	NA
WP_013578358.1\|62295_63072_+	hypothetical protein	NA	NA	NA	NA
WP_013578359.1\|63382_64336_+	ABC transporter permease	NA	NA	NA	NA
WP_041689265.1\|64418_65147_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.3e-20	51.5
WP_013578361.1\|65689_67180_+	hypothetical protein	NA	NA	NA	NA
WP_013578362.1\|67304_68018_+	hypothetical protein	NA	NA	NA	NA
WP_013578363.1\|68470_69226_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.3e-79	56.3
WP_013578364.1\|69652_71239_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_013578365.1\|71596_73696_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	8.6e-36	26.4
WP_013578366.1\|73688_74963_-	HlyD family secretion protein	NA	NA	NA	NA
WP_013578367.1\|75812_76151_+	hypothetical protein	NA	NA	NA	NA
WP_013578368.1\|76260_76893_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_162470193.1\|77687_78431_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	4.4e-51	86.1
79938:79952	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015061

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_015063

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection