CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015555	Thermoanaerobacterium xylanolyticum LX-11, complete genome	5 crisprs	cas3,RT,cas4,csa3,DEDDh,DinG,cas2,cas1,cas5,cas7,cas8b1,cas6,csm2gr11,csm3gr7,csx10gr5,cas10,csx1,csx20,cas8b2	0	41	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015555_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015555_1

890521-890731

Orphan

Consensus_repeat	Method
ATAGCTCAGTTGGTAGAGCAACACCCTGCCAAGCTG	PILER-CR

2 spacers

The CRISPR arrays of NC_015555_1

>merge|NC_015555|1|890521-890731|PILER-CR
ATAGCTCAGTTGGTTAGAGCGCCAGCCTGTCACGCTGGAGGTCGAGGGTTCGAGCCCCTTTTGGGTCGCCATAAAATTTAAAAAGCCTCGATAGCTCAGTCGGTAGAGCAAGGGACTGAAAATCCCTGTGTCAGTGGTTCGATTCCACTTCGAGGCACCATCAAGTTAAGCGGACATAGCTCAGTTGGTAGAGCATCACCTTGCCAAGGTG

>NC_015555|1|1|890521-890731|PILER-CR
ATAGCTCAGTTGGTTAGAGCGCCAGCCTGTCACGCTG	GAGGTCGAGGGTTCGAGCCCCTTTTGGGTCGCCATAAAATTTAAAAAGCCTCG
ATAGCTCAGTCGGTAGAGCAAGGGACTGAAAATCCCT	GTGTCAGTGGTTCGATTCCACTTCGAGGCACCATCAAGTTAAGCGGACATAGCTCAGTTGGTAG
AGCATCACCTTGCCAAGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015555.1\|WP_013787622.1\|883316_884093_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NC_015555.1\|WP_013787624.1\|884648_885218_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_015555.1\|WP_013787631.1\|891578_892085_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NC_015555.1\|WP_013787629.1\|889069_889216_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	unknown	unknown	gnl\|CDD\|365990
NC_015555.1\|WP_013787640.1\|901024_901324_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|367130
NC_015555.1\|WP_013787627.1\|887223_887445_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NC_015555.1\|WP_013787623.1\|884145_884652_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NC_015555.1\|WP_154645617.1\|894344_895880_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|376517
NC_015555.1\|WP_013787625.1\|885230_886034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
NC_015555.1\|WP_013787628.1\|887555_889058_+\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013787626.1\|886030_887053_-\|NADPH-dehydrogenase-NamA	unknown	unknown	gnl\|CDD\|239242
NC_015555.1\|WP_013787637.1\|898682_900083_+\|copper-amine-oxidase	unknown	unknown	gnl\|CDD\|378342
NC_015555.1\|WP_013298441.1\|890090_890294_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_015555.1\|WP_013787638.1\|900149_900491_+\|PqqD-family-protein	unknown	unknown	gnl\|CDD\|377508
NC_015555.1\|WP_013787639.1\|900492_900945_-\|DUF1003-domain-containing-protein	unknown	unknown	gnl\|CDD\|377629
NC_015555.1\|WP_013787632.1\|892185_893250_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238525
NC_015555.1\|WP_013787630.1\|889258_890014_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|238704
NC_015555.1\|WP_013787636.1\|897123_898554_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NC_015555.1\|WP_013787635.1\|895898_897089_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NC_015555.1\|WP_049781477.1\|893360_894299_+\|asparaginase	unknown	unknown	gnl\|CDD\|199208

Protein	Function_ID	Function_description	E-value
NC_015555.1\|WP_013787622.1\|883316_884093_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	3.98584e-66
NC_015555.1\|WP_013787632.1\|892185_893250_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238525	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.	3.73096e-120
NC_015555.1\|WP_013787631.1\|891578_892085_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	2.98694e-88
NC_015555.1\|WP_013787629.1\|889069_889216_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	0.00240845
NC_015555.1\|WP_013787640.1\|901024_901324_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	1.86383e-12
NC_015555.1\|WP_013787627.1\|887223_887445_+\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	2.3761e-29
NC_015555.1\|WP_013787623.1\|884145_884652_+\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	3.62143e-49
NC_015555.1\|WP_013787637.1\|898682_900083_+\|copper-amine-oxidase	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	2.6858e-31
NC_015555.1\|WP_013787625.1\|885230_886034_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.33648e-52
NC_015555.1\|WP_154645617.1\|894344_895880_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|376517	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase.	0
NC_015555.1\|WP_013787626.1\|886030_887053_-\|NADPH-dehydrogenase-NamA	gnl\|CDD\|239242	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.	0
NC_015555.1\|WP_013298441.1\|890090_890294_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.1704e-31
NC_015555.1\|WP_013787638.1\|900149_900491_+\|PqqD-family-protein	gnl\|CDD\|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	3.89978e-09
NC_015555.1\|WP_013787639.1\|900492_900945_-\|DUF1003-domain-containing-protein	gnl\|CDD\|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	1.20069e-52
NC_015555.1\|WP_013787624.1\|884648_885218_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	5.50141e-85
NC_015555.1\|WP_013787630.1\|889258_890014_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|238704	cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.	2.71798e-104
NC_015555.1\|WP_013787636.1\|897123_898554_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	1.02081e-65
NC_015555.1\|WP_013787635.1\|895898_897089_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NC_015555.1\|WP_049781477.1\|893360_894299_+\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	5.11627e-119

>NC_015555.1|WP_013298441.1|890090_890294_+|cold-shock-protein
MVRGKVKWFNAEKGYGFIEREGGSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAEKGPQAANVKKVS
>NC_015555.1|WP_013787630.1|889258_890014_+|NAD-dependent-protein-deacylase
MGQEDVYEKVARLIENSKKTVVLTGAGISTESGIPDFRSPGTGLWEKMDPMEALSTRVLYNDPKKFYNNGFKILLSMKDAKPNKSHYILAQLEQDGFISSVITQNIDNLHQKAGSKKVYEVHGQTRTGSCTNCGTVVPIDLLEVKVSKGEIPPKCDKCNGILRPDVVMFGDQMPEDFEKAWLEAEDSDLMIVIGSSLTVSPVNFLPRLSKHLVIINKSETPEDRRADAIIRESAGEALSKIVRYLKAAQQG
>NC_015555.1|WP_013787629.1|889069_889216_+|small,-acid-soluble-spore-protein,-alpha/beta-type
MDEKLKIEAAKELGLLDKVHKVGWSNLTAQETGKIGAIVKKKKYKSVM
>NC_015555.1|WP_013787628.1|887555_889058_+|hypothetical-protein
MIKRIFLLTLTLLIAFSLNAFSFGFSGDIQNQDYLKSLKDKMPFISDMSVDQIRKNSDGFIQINMKSEGDTYKTFDAVLDNNGNIKSVDYYVDQMKYLFGKSGESKISRDEAIIIGKKLLENVFGEKFDYVSEINDSMYIDNALERPIIYKFRYKNLVDDIPVYNIDAYVYIDSESGDILKLKGQRVDELSFDKNIKMIDNVGALNVFNSKFNPILVYLKNNNDNFPKYRLYYALSIDYNLVGIDAVNGDLVDFNGNMLYDDVLKIKCDANDFKKSYSIVANDEALKIAMNELNNFHIKDIKVLDSKTIERYFLTERETYTFNMNHTDKSLIANANIAVDKETGNIISENVDISDDDGLFDTYGNLDRIIGFTKEILRGKDCNLDLLKKPAIEDDDYTYVFYRVYNGAIVLDNYVRIKTDKNGKIINVSLNWDEADKSSKADILNESIAKNILVGEKPSLYYLYTSKYELMPIYRLSTMNSIVDALTGQKVSVNEFEKGY
>NC_015555.1|WP_013787627.1|887223_887445_+|NifU-family-protein
MRERVEEVLKLLRPSLQADGGDVELVDVTDDGVVQVRLTGACGGCPFAVMTLKEGIERAIKEEIPEVKEVVAL
>NC_015555.1|WP_013787626.1|886030_887053_-|NADPH-dehydrogenase-NamA
MLFTPIKIKDITIKNRIMMSPMCQYSADKDGLANSWHFVHYVSRAVGGVGLIMVEATAVESRGRITDRDLGIWNDQQVEPLKRIVDECKKHGVTMGIQLAHAGRKSEVADETPVAPSAINWSDDYKLPHELTKEEINAIVEKFKDAAVRALNAGFDAIEIHAAHGYLLHEFLSPLSNKRNDGYGGDITNRVRMLKEVIEAVKKVWPENKPLFVRVSSDDYIEGGIDIDEMIKILSYIKPLGVDVIDASSGGLLNAKIDLYPGYQIKYSEKIKSQLGFKTAAVGLITKAEMAEQILKDGKADLIALGRELLRNPYWPLYAAHDLKEDVEWPKQYERGKFRV
>NC_015555.1|WP_013787625.1|885230_886034_+|hypothetical-protein
MLKYAKTLFLLIFFPILIFGQIFAAAIPPKPSQYDYVYDYAKLMSQSDIDTIRNIGKEIENLTGAQIIVVTVDDIGDYQISDYALSLFRSWGIGQKDKNNGVLLLVDKKRLLEGLSGKVFISVGYGLEGAIPDSVAGRILDDYVLPKWNDKDYSGGIVEGYKAIVTLVAKEYNVDLKNVDQSQYAQQNDSGSNKAEGIISIIAMIILLIIFSNIRGWWWRGPGGFGPGGFGGFGGFGTGGGGFGGGFGSGGGGSFGGGSTGGGGAGR
>NC_015555.1|WP_013787624.1|884648_885218_+|LemA-family-protein
MKRSSVVLISVAAVVLLIVVYFFSSYNGLVSQQENVNSKWSQIENQLQRRADLIPNLVETVKGYAAHEQSVFDSVNKAREKLLAANTVQEKANANDELGTALGRLLAISENYPNLKADQNFRQLSDELAGTENRIAVARMDYNNAVQQYNTSIRQFPNVIIARMFGFTEKQYFKAQASASEVPKVDFSK
>NC_015555.1|WP_013787623.1|884145_884652_+|GAF-domain-containing-protein
MEKKELFKRLLSMIEKSSSEIDDLNYFYHEVVKILDSNLPYYNWTGFYFMEDGMLKLGPYIGRPTEHVKINVGQGICGRAVTENATIVVDDVTKEDNYLACSIETKSEIVVPIRIGDEIIGEIDIDSDEKAAFDDDDRAFLEAVAEIVSKKIKNDHIISKKTEKGETT
>NC_015555.1|WP_013787622.1|883316_884093_+|prolipoprotein-diacylglyceryl-transferase
MYIPSISPYAFKIGPIAVHWYGIFMALSIAAGAYYLYVRSKELNYDEDFLLNLLMIVVISGIVGARLMFVLANDIDWFYKDPIQILKIYQGGLSWHGAVLGGFLAGLYYCHKKNVKINPLEDYAVIGLAIGNMLVRIGNIFNQEVLGRQTDFAFGRWPAQLVGVAMGLILLIRYFYIERKHMPYGYQFWSFIFYYQLMRGLIEETVRDNPLFWPVYLNKHLGIGFFTLTQIATPFILILAYWMMRRVLNDPENKKVNY
>NC_015555.1|WP_013787631.1|891578_892085_+|amino-acid-permease
MNDESKKKLTLVPLILMIFTSVFGFNNMPRAFYLMGYSAIPWYIISGITFFLPYAFMMAEFGAAFKEESGGIYTWMERSVGPKYAFVGTFMWYASYVVWMVSICSTIFINISNIIFGTDKTSSLRLFGLNSTQVIGLLGILLIILITYVASKGLIIIKTVELLVNKRT
>NC_015555.1|WP_013787632.1|892185_893250_+|aminopeptidase-P-family-protein
MNKRLIKLQDLLSQYDFDGYYISKPANVSYITGFTGDDSIAIVTKDKAFFITDSRYTEQAKIETDGFSIIDNNRDMFKAVSECINLSGIKKLGFESGYMTYETYSMLKETCKIQLEPLNNIIESFRSIKDEKEIENIKQAQRIAEKAFEHILSIIKVGMKEKDIAAEIEYYMRKEGAEGTSFDTIVASGFRSALPHGKASEKTIENGEFVTFDFGCKYNGYCSDMTRTVVIGKATEEQKKIYNIVLNAQRNAIENLKANIKENEGDYLARSIIENEGYGEYFGHSLGHGVGLEIHEAPFMAKNKNGILKVNMVVTVEPGIYIPNFGGVRIEDMVVIKENNVLDLTNSPKDLMEI
>NC_015555.1|WP_049781477.1|893360_894299_+|asparaginase
MAMNKDKNSFVPALTGYEIMKLFNNHFDDVEIEIVDFGNYPSPHITIDLLKKLKSVILSLLNRSDICGVVVTHGTDTLEESAYFLDLTLDFSKPVILTGSMRNVSEDEYDGINNIKASIRVAINEKSIGKGVLVVFNNKIFAASEVVKISTSSLDAFCSPMLGPIGFVDTDKVIFYRNIIPQKKILTDAVEEKVSLLKTVIGMDDKLIKFCVDSGDKGIVIEGTGRGNVTPTMVEGIKYALANNVIVVIVSRCLTGRVLDTYGYKGGGKELVSIGAILGENLNGLKARIKLMLSLGYSNNYEEIKRMFQSAY
>NC_015555.1|WP_154645617.1|894344_895880_+|phosphoenolpyruvate-carboxykinase-(ATP)
MFMLDIDDVLENSSNILYNMPVSDLIEEAIKNNEGKLLENGAFDVYTGKYTGRSPRDKYIVDEESIHNDIWWTNNKSMEKENFIKIYNKVVNYIKNKKLYVFRGFVGADPQYKYQLTVVNEYAYQNAFVHQLFINPKSENELKKESDFTVICVPNFLADPIVDGTNSEAFIIISFEEKMILIGGTKYSGEIKKSVFTMMNYMMLKRNVLPMHCAANIGPNNDTALFFGLSGTGKTTLSTDPERYLIGDDEHGWSMRGIFNFEGGCYAKCINLSPYSEPEIWNAIKFGTILENVVYDTNNVPDYTSSKVTENTRASYPLEYISRRSKNGIGGNPKIIFFLTADAFGVLPPIAKLTNEQAVDYFLLGYTSKIPGTEKGISEPQATFSPCFGAPFLPSFPKKYADLLKEKIAENNTTVYLINTGWIGGPYGIGKRIELKYTREIIKNALDGKLEKTNFEKDAVFDLLIPENCDNVPNQLLDPLKTWNERKNYLETANKLLSVFKSKLDNIKHDI
>NC_015555.1|WP_013787635.1|895898_897089_+|pyridoxal-phosphate-dependent-aminotransferase
MILSKSAMGITPSATLEITAKANKLRSQGIDVISFGAGEPDFPTPQFIKDAAVDALNKNYTRYTASSGIGELKEAICKKLLLDNGLNYTVDQIVVSSGAKHSIFNAMLAILNPGDEVIIPSPYWVSYPEMVKLINCKPVIVKTKQENNFKISADEFIRSITKRTKLLILNSPNNPTGAIYSREELSEIARIAVENNIFIISDEIYEKLIYEGKHVSIASIDEKIKDLTIVINGMSKAYSMTGWRIGYSASSLKIAKVISNIQSHTTSNPNTIAQYASIAALKEGHDFTDEMKKEFDKRRNLILSLLDNIRGLKYIIPKGAFYVYVNIDYYIGKSYKNVIINDSIDMAKYLVDEANVAIIPGQPFGNDNYIRLSYATSVKNIKIGLERIKSALEKLV
>NC_015555.1|WP_013787636.1|897123_898554_+|amino-acid-permease
MHSKKRIGLWSLVMLTFVPTFGFNNITTNAVALGPAAIPSWLIVSLLYFLPLSIMIAELASANQDKEGGIYTWINSSLGPNWAFIGTWSYFVANLFYLQMVFARIPVMVSWALFGENRFTNPAILVYLSLILVVVLTYIATLGVKTFSKISDIGGKLTLATTVIFIVFAIVGVIIGKNPSATTFTAKTVIPKFNASYFSTFSWLLLAVAGAEVAGTYIKDVDNPRKTFPKGVIIATIFIALAYIIGSLAVCFVASPEVLEKAGLKDAGYIVYKILAHNWGLGSGKVAVQIYALIYTITSIAAYIVWMESPLRAMFSEVPEGTFPKFITKKREDGTMVNALWIQCAVLIVLIAVPLVGLKGINDFFVLLTNLSSLSLVIPYIVLGAAYLVFRMRGNHAPFEMLKSKSIVIIASGIVLILGIFAFFGAGWGDFVDSKSFSEAIIPILKDYGGPVLLIILGFIITRITSAITPTKINKN
>NC_015555.1|WP_013787637.1|898682_900083_+|copper-amine-oxidase
MKKIPQIIVLLILVFIFSHVYADTYYNGFLYTYQNNSYMMVPARGVFQSMGADVKWDGDTQTVKIIKDSLQIVLKINSTNAVVNGEGKDMPVPAIIKNGSTFLPLRFLAELIGDNQVKWDDSTQTAAIPFNNSYIYVKAVDYSLDATSFTKKVDGVVVTAVRIPHNSPYKPAVILANNQIGTTQSLYDMAKYYNADIAINGTFFNAYGGDPVPWNTIIKDGKVVHIVNVGSVFGFTANGQVKMDKLRISIVGGTNGSYSWPNNWYAYGFNHIPSINSVYIFTSEWGSHLGFNYGINIVVENGVVKDIEENQDVNIPADGYVINLNGSEEYLAKVFNVGKTVDYKINFTNDSGNPVDWSDVVEAVGAGPTLVKDGVVSADPVGEGFTEDKIVSLSYARSAIGVTAQGDILLVTTPEITVYQLAQIMKDLGAYNAMNLDGGASSGLYFKGGYLTKPGRDLSNALIFYK
>NC_015555.1|WP_013787638.1|900149_900491_+|PqqD-family-protein
MAKKNNNFMLYVPIHSKKLMWEENDNIVKLLFRHDKIVERLVRLFIKRPKITTIELDEIGSTVWKLIDGKRTVYDIGIKLKEVYGDKAEPTYDRLNKYLRYLHQNGWIRWRIQ
>NC_015555.1|WP_013787639.1|900492_900945_-|DUF1003-domain-containing-protein
MDNKEKLIHSYIDKKVSKNINEEHKDSLTFGDRMADKLADYAGSWSFIFTFSFLLIVWMVINSVALIRHFDPYPFILLNLVLSCLAAIQAPIIMMSQNRQEAKDRLKAQNDYEVNLKAELIIEDLHTKADKIIENQEKILKLLESQTQKQ
>NC_015555.1|WP_013787640.1|901024_901324_-|carboxymuconolactone-decarboxylase-family-protein
MPLPPFLSSLDKNDPEFASAIEKVYSYAMGPGSLDQKTKLLIALAIDALYGANLGVENISNQLRNMGVSEEEIKEAIRIAYFASGNTILASYISAFKNK

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Crispr_ID: NC_015555_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015555_2

1096957-1097053

Orphan

Consensus_repeat	Method
GTTGAAAAGTATTGATATTATGTCGAGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015555_2

>merge|NC_015555|2|1096957-1097053|CRISPRCasFinder
GTTGAAAAGTATTGATATTATGTCGAGAAGGTAGAGCCGAAACAGGAGAAACCGAAAGAGAACATCGTTGAAAAGTATTGATATTATGTCGAGAAGG

>NC_015555|2|1|1096957-1097053|CRISPRCasFinder
GTTGAAAAGTATTGATATTATGTCGAGAAGG	TAGAGCCGAAACAGGAGAAACCGAAAGAGAACATC
GTTGAAAAGTATTGATATTATGTCGAGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015555.1\|WP_013787802.1\|1097974_1098334_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_015555.1\|WP_013787789.1\|1084954_1086274_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236141
NC_015555.1\|WP_013787797.1\|1092675_1094580_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NC_015555.1\|WP_013787808.1\|1105740_1108101_+\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NC_015555.1\|WP_013787800.1\|1097227_1097740_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_015555.1\|WP_013787793.1\|1089080_1090013_+\|response-regulator	unknown	unknown	gnl\|CDD\|226229
NC_015555.1\|WP_013787807.1\|1103395_1105741_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223896
NC_015555.1\|WP_013787791.1\|1088418_1088622_+\|4Fe-4S-ferredoxin	unknown	unknown	gnl\|CDD\|349764
NC_015555.1\|WP_013787801.1\|1097757_1097955_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_015555.1\|WP_013787788.1\|1084473_1084812_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NC_015555.1\|WP_013787794.1\|1090055_1090790_+\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013787795.1\|1090844_1091720_+\|putative-sporulation-protein-YtxC	unknown	unknown	gnl\|CDD\|378056
NC_015555.1\|WP_013787803.1\|1098389_1099160_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NC_015555.1\|WP_013787809.1\|1108152_1108863_+\|sporulation-protein-YunB	unknown	unknown	gnl\|CDD\|131879
NC_015555.1\|WP_013787804.1\|1099456_1100476_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_015555.1\|WP_013787805.1\|1100488_1102870_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_015555.1\|WP_013787806.1\|1102967_1103342_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NC_015555.1\|WP_041592218.1\|1094681_1095923_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NC_015555.1\|WP_013787796.1\|1091797_1092397_+\|DUF445-family-protein	unknown	unknown	gnl\|CDD\|226834
NC_015555.1\|WP_013787790.1\|1086460_1088302_+\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676

Protein	Function_ID	Function_description	E-value
NC_015555.1\|WP_013787802.1\|1097974_1098334_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	6.98149e-66
NC_015555.1\|WP_013787789.1\|1084954_1086274_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236141	PRK08032, fliD, flagellar capping protein; Reviewed.	7.54522e-19
NC_015555.1\|WP_013787797.1\|1092675_1094580_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_015555.1\|WP_013787808.1\|1105740_1108101_+\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NC_015555.1\|WP_013787800.1\|1097227_1097740_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.75448e-87
NC_015555.1\|WP_013787793.1\|1089080_1090013_+\|response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	2.47762e-38
NC_015555.1\|WP_013787807.1\|1103395_1105741_+\|hypothetical-protein	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.31192e-123
NC_015555.1\|WP_013787796.1\|1091797_1092397_+\|DUF445-family-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	1.04499e-23
NC_015555.1\|WP_013787788.1\|1084473_1084812_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.17741e-45
NC_015555.1\|WP_013787791.1\|1088418_1088622_+\|4Fe-4S-ferredoxin	gnl\|CDD\|349764	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI. Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.	1.13938e-08
NC_015555.1\|WP_013787795.1\|1090844_1091720_+\|putative-sporulation-protein-YtxC	gnl\|CDD\|378056	pfam08812, YtxC, YtxC-like family. This family includes proteins similar to B. subtilis YtxC an uncharacterized protein.	5.26291e-74
NC_015555.1\|WP_013787803.1\|1098389_1099160_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	7.66109e-81
NC_015555.1\|WP_013787809.1\|1108152_1108863_+\|sporulation-protein-YunB	gnl\|CDD\|131879	TIGR02832, conserved_hypothetical_protein, sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect. [Cellular processes, Sporulation and germination].	3.16712e-66
NC_015555.1\|WP_013787804.1\|1099456_1100476_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_015555.1\|WP_013787805.1\|1100488_1102870_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_015555.1\|WP_041592218.1\|1094681_1095923_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.62436e-14
NC_015555.1\|WP_013787801.1\|1097757_1097955_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	6.12651e-22
NC_015555.1\|WP_013787806.1\|1102967_1103342_+\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	1.83861e-12
NC_015555.1\|WP_013787790.1\|1086460_1088302_+\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	2.62497e-156

>NC_015555.1|WP_041592218.1|1094681_1095923_+|MFS-transporter
MTTKNREVYKYLNYNIKMNLLNGITFSIGYNMIMPFVGIFAIKLGANNYEVSLINSLPALMALIGILPATIFINRAKNVFKFAYVLEYITRSFYLLVALVPFMSKFRPEAVVLFVGLLNLPAIVAGMCWQSFMSDLIPEEFRGKVFADRNIWTGVLGTAAVFITGILLDRIKFPYGYQIMFFIAFLFGILDAYYYSKFHYVSHKKEASASILDSLKTMMQSRKFIYFSLASFIFTFTWMMAWPIFTIYKVDDLHANNMWMSISTIVGSVGSIITYKWWANLADRKGNGIALSISTLLISTIPALWAKVTSLYVGAVIDFFGGMATAGYTMLSLNWLLELLPDHKEKMNYIAIYTIVTQFAAFLSPIAGTWFYEIVGYETFMYVTTVLRVLSSVLLFAVALYKPEKTVLSKGGV
>NC_015555.1|WP_013787797.1|1092675_1094580_+|threonine--tRNA-ligase
MKIILKDGTEREYESGISVYEIAKSLSQKLAKEALGGKLNGRIVELFTPINEDGKLEILTFDDEDGKKIYWHTSSHIMAQAIKRLYKNVKLTIGPAIDNGFYYDFDVDEPFTVDDFSKIEDEMNKIIKEDLKLERFVLPREEAIKFMEEKGEPYKVELIKDLPQDATISFYRQGEFTDLCAGPHLPSTGMVKSIKLLSVAGAYWRGDERNKMLQRIYGISFPKKSMLDEYLNMLEEAKKRDHRKLGKELDLFSIHNEGPGFPFFHPKGMILRNILEDFWRKEHAKRGYQEIKTPIILNEELWHRSGHWDHYKENMYFTKIDDEDYAIKPMNCPGALLVYNSTMHSYRDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAHLFMTPDQVESEILGVIKLIDYFYKIFGFEYFVELSTRPENSIGSDEDWELATNALIKAMEHIGLNYKVNEGDGAFYGPKIDFHLKDSIGRTWQCGTIQLDFQMPERFNCEYVGDDGEKHRPVMLHRVVFGSIERFIAILTENFAGAFPTWLAPVQVKILPISDKHLAYAQNIHERLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVEAGNVSVRSRKEGDLGSKSLQEFLSSILEEIKQKSL
>NC_015555.1|WP_013787796.1|1091797_1092397_+|DUF445-family-protein
MHFFLQMMFLGVVGAAIGWITNYIAVVMLFRPIKPVKIFGISIQGLIPRRRDEIASSIGKVVEDELVSMDDILDKLLNTDNRNYIIKKILDDVDSTVEKNIPSFIPKSLKSMIVNYVVGIVSKEAEKFLDESAATMLNDMSEKIGIAEIVEEKIKLFELEKLEKIILDVSNKELKMIVILGGVLGFVIGILQAFVVRLL
>NC_015555.1|WP_013787795.1|1090844_1091720_+|putative-sporulation-protein-YtxC
MQLLSIGIPNALLSGSVFNNELEYMKNKGLDFTVNLDNRGNITFFNIDVEDRVSSKNIAKIKEHVSDMISDVIVNQIDKKLIKRIIDKYYYYFDSDEKRKIENIARGILDNDVNRETFKLVKKERIFEEIEDFLKDNETIDIEGFVNFRLRDFIGELSEVVDRAVDEYMMQKEYDEFIGLLKYFVELQDSKIDVLNILVDKSGKFLFYDKEKKPITGKFLSDITIEFTGGELTDDDMLISTLIAMAPSKIYIHSLENIKSKDVFDTVEKIFSNKVFICNGCSLCTINEARK
>NC_015555.1|WP_013787794.1|1090055_1090790_+|hypothetical-protein
MKNPYVPDKKVRCVVVDGRHCDVANSLKKIGIEVVMTERHSSLYEAISYHPDIIMHNVGDGQVVLAPDINGNFVKKIKDLNLDVIFGKTVLGRNYPDNIAYNVARLGDYAFHNLKYTDPVLRGVLEKKGVKFIHVKQGYTKCNIAIVDNISFITSDAGIYKTASKEGFDCLLIEQGCIKLDGFDYGFIGGASGLIDKDVFCVAGDLRYHNEYKKIIDFLKYKNKEIIFLSSGEVKDIGSIIPLY
>NC_015555.1|WP_013787793.1|1089080_1090013_+|response-regulator
MNEKSILIVDDDKLSRTILKNILGSAGYKIYESQDGDEALKLYRRILPDMVILDVVMPGLSGFDLLRILRDEEENQLVPVILLTSSDNYEEKLHGLELGADAYITKPFNEKELLAQVKNLFQRIEHNRMANPLTGLRGNIDIKYEIRRRIKNGLLYAVLYIDLDNFKSFNDYYGFSRGDKIIRQTARILKDALFKCGNPNDFLGHIGGDDFIIITTPDKIDDICNYIINTFDEDIKRYYDDEDLANGYIEVINRRGEIQRFPFVSISIAVVTNENRNFDNELQISAVAAEIKRKLKSMEGSKYLKDRRKC
>NC_015555.1|WP_013787791.1|1088418_1088622_+|4Fe-4S-ferredoxin
MRYAYVDQEICDRSPFCPASHSCKFGAFKLSRKGLFQVEINVDKEKCTGCGVCTRYCPHGAIKLVNA
>NC_015555.1|WP_013787790.1|1086460_1088302_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGIAGWVSFDEEVINRKNIVVAMGERLRNRGPDSWGTWFSTHCGFAQTRLIVIDPEGGEQPMIKEFGERKYVIIYNGELYNTEEIRDELRSLGYKFNGHSDTEVLLTSYIEWGSDCVHKLNGIYAFAVWDDYENKLFLSRDRIGVKPLFYTYKNGSLIFGSEIKAILAHPYVQAEVDEEGLAEIFVMGPTRTPGIGIFRDIYELKPGHSLTFNKGGIKIERYWSLVSKDHEDDLKITMEKIRYLLDDASKRQLVSDVPLCSLLSGGLDSTAVSAFANEKLKKLGSKLITYSVDYIGNDKYFKPNQFQPNSDSDLVEAVSKEIYTAHNYVYVDNEELADALLPALYARDLPGMADVDSSLYLFLREVKKDVKVALSGEGADEVFGGYPWFRNKAAIESGTFPWIRMVEKRMNLLSKDVVKKIRPTEYLNDRYNEALREVPKLSGEDKASSRMREIFYLNQTRFLSMLLDRMDRMSMASGLEVRVPFLDHRIVEYVWNIPWDMKNLHNREKGLLRESLRGYIPDIVVERKKSPYPKTHNPVFKEKVKSWLQRIIDDPSSPILQLVNKNEVQNLIDTDAKDYDPAWFSQLMGGPQLYAYLIQVNEWLLKYKIRIL
>NC_015555.1|WP_013787789.1|1084954_1086274_+|flagellar-filament-capping-protein-FliD
MAGYIDTSYMYMMYPYYSDYSYLFNMSNPLTSLSNISSDNISQIAQQALYTDMYNQQLPMQTTNALVMLNSYANNLAEAASQLQLTSPDNVFNQMVATSSDPNSISVSAQPGATASTYNVTVNQLAMAQQNNGTSLSSNSVTSLTPGTYSFKAQVGGQQYNISFNVNQGDTNQTVLDNMAQAINSANIGVTAIVNNNPYLGTSQLEINANNTGTNNAFTLTDVNGNAVSYTGANTVTVEATNANYTINGVSGTSQTNTVNVDNNNLSMTFNKTVSNATVTVAPDTQSISNSINNFVNNYNDLLTYANQNQQYISPLVVSELTQNYEYQASNLQAIGITQNPDMTLSVDQNALNNAIQNNNAIQNNFSTAQAAFSGFDGLAVNVGQFAWRIAESPLTDYANETMPLVNNNMGIYDSTGMLDASLIQTMLMPSGQFINSLI
>NC_015555.1|WP_013787788.1|1084473_1084812_+|P-II-family-nitrogen-regulator
MKKVECIIRPDVLEDVKSELNKLKIHGMTVSQVFGCGHQKGKKEIYRGAEIEISLLPKVKIEIVTDDGSVENIVDAVTKVARTGNVGDGKIFIYDIQDAIRIRTGERGEKAI
>NC_015555.1|WP_013787800.1|1097227_1097740_+|translation-initiation-factor-IF-3
MNKELQVNEEIRDKEVRLIDQDGNQLGIMSAKEAYKIALERHIDLVKIAPQANPPVCKLMDFGKYRYEQSKKEKESKKKQKVINIKEIRMTPAIEEHDFGVKVKSAMKFLKDGDKVKVTIRFRGREASHTNLAEELLNRFAKSLEEYGNVEKAPNMEGRNLMMILAPKNV
>NC_015555.1|WP_013787801.1|1097757_1097955_+|50S-ribosomal-protein-L35
MPKMKTHSGAAKRFALTKTGKVKRSKAFKRHILTKKTRKTKRNLRKIAYLSGVDAKNIKRLIPYA
>NC_015555.1|WP_013787802.1|1097974_1098334_+|50S-ribosomal-protein-L20
MSRVKSGKVTRKRHKKILKLAKGYYGAKSKLFRVANQAVMKSLNYAYIGRKLRKRDFRKLWIARINAAARANGISYSRFINGLKKANIEINRKMLSEMAIHDNKAFAELVNIAKQQLNA
>NC_015555.1|WP_013787803.1|1098389_1099160_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MVITSEKNEFIKDVKKLADKKYRYEKRLFFVEGKNSVFEALKSGFEIVHLLVAEDFNIDFQIEKEKIVFVDEKVFKKISDTVAPQMIMAVVKMPKWEVNDIVKEGGFYVILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLPVVNDVEPSRLFHVLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLLDEFIDSSFKIPMDGMAESLNVSVAASICLYESERQRLIK
>NC_015555.1|WP_013787804.1|1099456_1100476_+|phenylalanine--tRNA-ligase-subunit-alpha
MEETLRSLLEEAKKELSSAESLKTLDEIRVKYLGKKGELTKILRGMGSLSPDERPIVGKISNEVREEIEKELTQKREEVLRQEKEKKIKSEYLDITLPGKVHEIGHKHPMTKVLDEIKDIFLGLGFSIAEGPEIELDYYNFEALNTPPDHPARDLQDTFYITKNILLRTQTSPVQVRTMEKSKPPIKVISPGRVYRSDEIDATHSPVFNQIEGLAVDEGITMGDLKGVLNLFAKRLFGSDTKTKFRPHYFPFTEPSAEMDVSCFACGGKGCRVCGYSGWIEILGSGMVHPNVLRMSGIDPEKYSGFAFGMGLDRITMLKYGIDDLRLLYENDLRFIKQF
>NC_015555.1|WP_013787805.1|1100488_1102870_+|phenylalanine--tRNA-ligase-subunit-beta
MLISYSWLKDYVDLSVDAKKLADDLTMSGSKVETIKSYGEEIKNVVIGKIVSLEKHPDANKLQIGIVDVGEEKLQIVTGAQNIKVGDYIPVALHGSTLPGGVKIKKGKLRGVESNGMMCSAKELGLDESLLPEYQRNGIFILPELPLGEDVRKVLELDDVIEFEITPNRPDCLSVVGIAREAAATYRKSYSMPEVKINEVDDKNPATVTVEADDLCFRYVARVIRNAKIGPSPMWMQMRLLKAGIRPINNIVDVTNYVMMELGQPLHAFDLDKVKNRHIIVRRAKEGEKLTTLDDKERILDRDMLVIADEERAIGLAGVMGGQNTEITDDTINILIESANFKGSNIRYTSRKLGLRSEASSRFEKGLDPEITVLACNRAAQLMAELSGGEILEGLLDVYPKPVTEKVLSVRYERINKLLGTNLSCQEMKEILSFLDFGAICDGENLIVKVPAFRSDIDGEADIAEEIGRMYGYNNIEDTLLKGTQITAGVKTREQKLEDTVKDVFLSCGLNEVITTSFMGMKDLDRINLPDDSYLRNAVKIMNPLGEDQAYMRTTLLPFMLNVAYTNYSRKVPEFKAFEISRVFIPKSLPVEELPTEIKSGIIAMYGQDVDFLTIKGVVEELLDVLNIKNVKYVRSQNPAYHPGRSADVIVEDEKICVFGELSPDVAENYDINKRVYVAEVNLELLFKHANDEKVYKPLPKYPAVERDIAVLVDKNTFVADIESVIRKVGGKLVDDVKLFDVYEGENIPDGKKSVAFSIWYRSYDKTLTDEEVSKVHDKIVMSLNEELGAQLR
>NC_015555.1|WP_013787806.1|1102967_1103342_+|cell-division-protein-ZapA
MEIRKITVNINGNEYILKTDYPEDYILRLTEHLNGVISGISGSYNRLSNQMVLVLSALNIADELFISREENSALKKEIVSLKSRLSADDERIEELTEEVEKLKEELKAAREELEEYINTFDDVG
>NC_015555.1|WP_013787807.1|1103395_1105741_+|hypothetical-protein
MKRVELLAPAGNLETLKFALNYGADAVYIGGKLFGARAYAANFEEDELKEAVEYAHLRDRKVYVTVNTIVFNKEVELLLKYIDYLYQLNVDAIIVQDFGVVKLLKDFYPELDIHASTQMTLSNLESIKAAKEIGIKRVVVPRELSLKEIEKIKSVTGIEVEVFVHGALCVSYSGQCLFSSIIGGRSGNRGRCAGPCRLKYDLLDDKMNTIASNMHLLSMADLCTIDHIKDMIDSGIDSFKIEGRMKEKEYVASVVASYRKAIDAYLSGENINTDVYKEMMSGIFSRGFSNGYLYERKPRYMSYINPKNKGVPLGKVISIDGKKIKVSLLNSLSVGDGISTETGEHGYKVDVLIADGKKVDEAHKGQVVELKKIPVNCGDVLYKTYDVKLNKIFSVSNELKSPVDVFVNMKENRHLNIMIKNNDICVSKDSKIVSTKALKKAVDKDTLIEKVASINDTPFFVKSIEVDMDEGLFMPLSEVKETRREAVEVLITKKLKYRRPKNININLYKLINDKISDLKLSFYTEKEEHVKIACALGVDRVYFDYRLNGDVLKDVICYMDKCEIIPAFPQIMRDELDDFKHMLKNIKEMGLKKVLVTNIGLYDTAVKLGLDVCVDFNLNVSNSLAVDFFHEADTITLSPELNIHQIEDISLRSNTKFEAIVYGRLPLLTMEYCPIKNLKGCDKRGCEEGKYFLKDRKGNLMKIVSDGFCKIRLLNSSVLYMADKMNDLKKIGLSYIRINDTVESDEEIRDVIKAYKDSLEFGTYDLHVENYTRGHFYRGVL
>NC_015555.1|WP_013787808.1|1105740_1108101_+|endonuclease-MutS2
MDERYFKNLEFDKIINQIVNLCDSEPGKELALSIKPYENVEKALEEIEKVNEAVSFISSYGNISFAFKKLDEILAKAKIKSSLSPGQLLSLSRFLSLAGKVKVYLRNEKEESSFLYLREYNMRLTNIKELYDKIDRAVMSEDELADDASPALKEIRRQKAQINNKIRDTLNSIIASSPKELQDPIITIRNGRYVVPVKQEYRGTFKGLIHDQSSSGATLFIEPMAVVELNNDLRQLEIKEQHEVERILAELTEDVGKHVDEINENMVVLKELDVIFAKAKYSISTDSTKPILNTKGYVNLKNARHPLISKDAVVPISIHLGESFNTLVITGPNTGGKTVTLKTVGLLTLMSMSGLNIPADEGSDVAFFDNIFVDIGDEQSIEQSLSTFSAHMTNIVKILNNVTSNSLVLLDELGAGTDPTEGAALAMSILDFLHRMNCRTIATTHYSELKQYALKNEGVENASVEFDVETLKPTYRLTIGIPGKSNAFEISKRLGLNDDVIDNAKSYITSEELKFEDILKDLENKRIEAENAKEEIEALKNQVESLRQEYEKKIKDTEREREKIIEKAREKAKKILENTKATADEIIAKLKEAEKSDKKNKLIEEARLKLKENINEMEESLKKSEIPEYKKVPKDVMPGQTLYIVPLDQTGIALSEPDKDGNVKIQAGILKMNVHISNLRETESSEEKEMEKGFAKYINEKSTNISTSIDLRGKTLEEASIEVDKYLDDAYLAGLKQVTVIHGKGTGTLRSGITRLLKMNKHVKSFRLGRYGEGEDGVTIVELKEK
>NC_015555.1|WP_013787809.1|1108152_1108863_+|sporulation-protein-YunB
MRRKKWGRRRIKIRGINKNFVYVLASLFILSLLYMFVTYRLTPALIKASETVAQEVAVKSINKSINEKVLKGIQYSDLINVRTDNSGKVSMLQANTIEMNILSAKITQAVQDNLNSIGSVYVKLPLGSLISKDVFANTGPKIKVGLLPIGSVNVDFESSFEPAGINQTRHIIYLYIKTNIQIIAPLASKQIQVSTHMPIADSIIVGDVPQSFVDVNGNKYTVPVPNGNSKINIESN

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Crispr_ID: NC_015555_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015555_3

2388534-2394161

TypeIII

Consensus_repeat	Method
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	PILER-CR
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRISPRCasFinder
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRT

84 spacers

cas4,cas1,cas2,cas3,cas5,cas7,cas8b1,cas6,csm2gr11,csm3gr7

The CRISPR arrays of NC_015555_3

>merge|NC_015555|3|2388534-2394161|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTCCTTATAGGTAGGCTAAAAACTGAACGATGAAGAAAAAAGACTATATAAAGCTAGAATGTTTCAATTCCTTATAGGTAGGCTAAAAACGCTTTAAAAAACTTATTATACGAAACAAATATTTCGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGGATGTAGAGGCTTTAGAAAAATATATCCATATTGCGTTTCAATTCCTTATAGGTAGGCTAAAAACGGAGATTTTGAAAATGAAATATGTTATAATTTCAATGTTTCAATTCCTTATAGGTAGGCTAAAAACAATTTTAAAAAAGGAGATTGATAAAAATGTTAAAAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACCTATCGTAAAACTGATGCTTAACTCATCGCCTGCAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACATTTTAAGTTGCTCTAAGTTTTTGATTGCGTTGTTGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTGGATGTTTTTTAATAAAGGCAGCTTTGTAGCTGTTTCAATTCCTTATAGGTAGGCTAAAAACGAATAAAATTCCTCTTTTATTTTTTTGCCTATTTTTAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTGCCTTGCAAAAGTGACGTTAAAACTGTCTTTGTTGGGTTTCAATTCCTTATAGGTAGGCTAAAAACGTTATTTAAGACTTAACTATACTTTTGATGATAGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACGAAACAATTTGATCTGTCATACCACTAAAAGCAGTAGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTTGCATCTTTTTATCCCCTTTTATTTTTTTTCTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTCTAATTCTTCTTCTTTTTCTAAAAAGTCATTTTTTGGTTTCAATTCCTTATAGGTAGGCTAAAAACCTGCTGATGCAGTGTTTGCAGCGGTTACTGAGGGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTACACCAGCAAACATAAACGATCCTAATATAACATGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAGTTGCTACAAAAGTTGAATACTTTAGGGTGCCTCGTTTCAATTCCTTATAGGTAGGCTAAAAACAGGCTCTTGTGTCTCTGTTGTCATTAGTAATGTAATTGTTTCAATTCCTTATAGGTAGGCTAAAAACCAAGGTTTTTAAGGCATTTTTATATATATCCATACTGGTTTCAATTCCTTATAGGTAGGCTAAAAACTAGTCGACGATAAATTTATATTCTGGTTTCTTCCACGGTTTCAATTCCTTATAGGTAGGCTAAAAACACTCACTCACGCCGTATTTGTCAAGCCAATTACTGTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTACAAGCACAACATTTAATATGTCCGAAAGCGAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTATAACACACGCACAACACAATGTCAACATACAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACGGCTATGATATAATTCTTGTTGCTCAAGACTTGCGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTATATATCCTGCTTTTAGCTATACCAGTATTTGGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACGTGGTTTGACTGTTAGTCTTACTCACTATTCTGATCCGTTTCAATTCCTTATAGGTAGGCTAAAAACTGCCTTCTGTTCCAAATATAACGCAAGTTCAGACTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACCCAAAAATTATCAACGACAAAAACGATGATTTGTATTGTTTCAATTCCTTATAGGTAGGCTAAAAACGGAATATTATTCCAGCCTTGCACAAATTCTATGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTATTCTTGTTACTCGCAAGCTTTTTGGAGGTGCGCAGGTTTCAATTCCTTATAGGTAGGCTAAAAACCTCTTAACCAATTTTAACACTTTATCCACCTCACTATGTTTCAATTCCTTATAGGTAGGCTAAAAACATCTTGATATATTGCTAAAAACTACTTCTTCGCTTGTGTTTCAATTCCTTATAGGTAGGCTAAAAACTCGCAGACAATTACTTGACAAATAAAGAAATAGACAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTCTCTAAGAGATTTAATCCTTTTACAACATCGTCAGTTTCAATTCCTTATAGGTAGGCTAAAAACCATTGTTAATTATGACGTTATTCAATATAAAGAAACGTTTCAATTCCTTATAGGTAGGCTAAAAACTAATAAAATAAATGAAATTAGCAAAGAAGAATTAAAGTGTTTCAATTCCTTATAGGTAGGCTAAAAACCTATCAAGCACAACATCACCACTTGAAGGACTTACAGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTGAAGTGGAGTATTACAAACGTGACAAAAATTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTGCAATATAATCATTTCCGTTAGACACTCTATTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTATAGCAAACGTTTGTCCTCTACCCAAATCCAACGTTTCAATTCCTTATAGGTAGGCTAAAAACTGATATATATTTTGAAAGACTGCAAAAAATTACTAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTATTCAGAAATAATTGTTTTAGAAGCGGTATATTGTTTTTCAATTCCTTATAGGTAGGCTAAAAACCAAAGACTTCCTAAAAAAGAGGTCTTTGCGTATGAGTTTCAATTCCTTATAGGTAGGCTAAAAACACGTCTTGCTAAAAAAGGAGAAACGTCTGTAGCCATGTTTCAATTCCTTATAGGTAGGCTAAAAACTTGTATTTTCCAATAGTTGCCTTGCCAACCATAGCAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTGTATTCACAAGGAATTAAAGCGACAACAAGGCAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAATAGTCATTCCAGGCAAGCCAGTGCCAGCAGCAAGAAGTTTCAATTCCTTATAGGTAGGCTAAAAACAGACCCAAGACTTGTAACACGCATAACACAGTATGGGTCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTAACATTTACTTCAAGCAAAAACATAATCTTTTTGGTTTCAATTCCTTATAGGTAGGCTAAAAACCGACAGAGGGCAGAAAATGGTAGAAATCGAAAAGATGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAGAGAAGAAGGTTACATTAAGCGTTTCCGGTATATCGTTTCAATTCCTTATAGGTAGGCTAAAAACCCAGCTAAAGATTAAGAACTTGAGAAGCAAGTTAGAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTACTGCAAGTGTAAATTTTGCTGTCGGTGTTCCGTTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTCATTACTGCCATTGCATTTGGGTCATTGTACATGTTTCAATTCCTTATAGGTAGGCTAAAAACTGGCAGGGCAATGTAATGCAATGGTTATGTTATGCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTGCTATCATGAATGGTATTAATGCTCTTGTAACTGGTTTCAATTCCTTATAGGTAGGCTAAAAACTATAGACGAAGATTTACCATTTTGAAAGGAGAGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGCAGTAAAAGAGGCAGAGGTAAACTTTTGAAAGAATAGTTTCAATTCCTTATAGGTAGGCTAAAAACCGAAATATTGTTTTTGTTAATGAAGATAGGGGTAGTGGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTGTTTGGAGAGTGGTGTATTTTCAAAGCAGGTGAAAGGTTTCAATTCCTTATAGGTAGGCTAAAAACTATCGGCAGAACTGGGACGCATATAATAGATTTTTTGTTTCAATTCCTTATAGGTAGGCTAAAAACCGAATCGCTTACTCTCGACAAATTCCTATGATGAAGTTTCAATTCCTTATAGGTAGGCTAAAAACATTATTAGCATATTCAATATTTTTATTCTTATGCAGTTTCAATTCCTTATAGGTAGGCTAAAAACCTCCATAAAGAACCTTCGACTTATCACCCCAATCTAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTACGCATTGGCGATGTATGGATTAGTAATGTAAAGGGTTTCAATTCCTTATAGGTAGGCTAAAAACTAGTAACATTACTCAAATTATAAGTGCCAAGACTTTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGCTGATTGTGGTTGGAGTGCATGTTCAATATAAAGTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTAGAAGTATGGCCGACTTTGAGGTTATGCATAAGGCCTGTTTCAATTCCTTATAGGTAGGCTAAAAACAAACTATCAGGAGGGCTATCCTCCAAAGGGTTTTTGGGTTTCAATTCCTTATAGGTAGGCTAAAAACCGCTTTTATTTTATCTTTTAAATGTAAACCTATACAGTTTCAATTCCTTATAGGTAGGCTAAAAACCTACAATTGTTCCTGTGTCATCAATTGTAATTATAGTTTCAATTCCTTATAGGTAGGCTAAAAACTAGAGGAGGTAATTCTATGTTACAAAAAGGAAGTACAGGGTTTCAATTCCTTATAGGTAGGCTAAAAACGTTGTGTTGCTTCTCAAGGTGTTCCAATACTTTATTATCATGTTTCAATTCCTTATAGGTAGGCTAAAAACCATATTCTGTTTTTCCTGCTCCCATTGGACCAACTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTATTCTTTTTCAGGATGTTCTTCTACTTCGGAATCTGTGTTTCAATTCCTTATAGGTAGGCTAAAAACGGCTATACTCCTGTCAACAAAGCAGGGGATACGATGTTTCAATTCCTTATAGGTAGGCTAAAAACAGTTTTCAGGTCGCAAGGAGGCCTAACGTTTAAATAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTACAGCTTAAACGGGACATACAAAACAGCGAAATAAGTTTCAATTCCTTATAGGTAGGCTAAAAACAGCTTTAAGTTTAGGTGAATTACCAACCATGTACATGTTTCAATTCCTTATAGGTAGGCTAAAAACTCTTTAATGCTTGTTCTTGTTATATTACAAAATAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTTCTTCAGGAGTCGTTGCTTTTATAATTTTCAAGTTTCAATTCCTTATAGGTAGGCTAAAAACATTCGCAACTTCTTCAACATCAAGTAAATAATTTCGTTTCAATTCCTTATAGGTAGGCTAAAAACATGTACCAACAGCATCCATTGCATAAAAGGAGGCATAGTTTCAATTCCTTATAGGTAGGCTAAAAACGAAATTCCTGAACTGAAATATATTTCAGTTCAGGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015555|3|2|2388534-2394161|PILER-CR
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAACGATGAAGAAAAAAGACTATATAAAGCTAGAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTTTAAAAAACTTATTATACGAAACAAATATTTCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGATGTAGAGGCTTTAGAAAAATATATCCATATTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGATTTTGAAAATGAAATATGTTATAATTTCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATTTTAAAAAAGGAGATTGATAAAAATGTTAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCGTAAAACTGATGCTTAACTCATCGCCTGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTTTAAGTTGCTCTAAGTTTTTGATTGCGTTGTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGGATGTTTTTTAATAAAGGCAGCTTTGTAGCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAAAATTCCTCTTTTATTTTTTTGCCTATTTTTAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTGCAAAAGTGACGTTAAAACTGTCTTTGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTATTTAAGACTTAACTATACTTTTGATGATAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAACAATTTGATCTGTCATACCACTAAAAGCAGTAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTGCATCTTTTTATCCCCTTTTATTTTTTTTCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTAATTCTTCTTCTTTTTCTAAAAAGTCATTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGCTGATGCAGTGTTTGCAGCGGTTACTGAGGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACACCAGCAAACATAAACGATCCTAATATAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGTTGCTACAAAAGTTGAATACTTTAGGGTGCCTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGGCTCTTGTGTCTCTGTTGTCATTAGTAATGTAATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGGTTTTTAAGGCATTTTTATATATATCCATACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTCGACGATAAATTTATATTCTGGTTTCTTCCACG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACTCACTCACGCCGTATTTGTCAAGCCAATTACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTACAAGCACAACATTTAATATGTCCGAAAGCGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAACACACGCACAACACAATGTCAACATACAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATGATATAATTCTTGTTGCTCAAGACTTGCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATATCCTGCTTTTAGCTATACCAGTATTTGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTGGTTTGACTGTTAGTCTTACTCACTATTCTGATCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTCTGTTCCAAATATAACGCAAGTTCAGACTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAAAAATTATCAACGACAAAAACGATGATTTGTATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAATATTATTCCAGCCTTGCACAAATTCTATGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTCTTGTTACTCGCAAGCTTTTTGGAGGTGCGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCTTAACCAATTTTAACACTTTATCCACCTCACTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCTTGATATATTGCTAAAAACTACTTCTTCGCTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGCAGACAATTACTTGACAAATAAAGAAATAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTCTAAGAGATTTAATCCTTTTACAACATCGTCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATTGTTAATTATGACGTTATTCAATATAAAGAAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATAAAATAAATGAAATTAGCAAAGAAGAATTAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCAAGCACAACATCACCACTTGAAGGACTTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGAAGTGGAGTATTACAAACGTGACAAAAATTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCAATATAATCATTTCCGTTAGACACTCTATTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTATAGCAAACGTTTGTCCTCTACCCAAATCCAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGATATATATTTTGAAAGACTGCAAAAAATTACTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCAGAAATAATTGTTTTAGAAGCGGTATATTGT
TTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAGACTTCCTAAAAAAGAGGTCTTTGCGTATGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTCTTGCTAAAAAAGGAGAAACGTCTGTAGCCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATTTTCCAATAGTTGCCTTGCCAACCATAGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTATTCACAAGGAATTAAAGCGACAACAAGGCAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAGTCATTCCAGGCAAGCCAGTGCCAGCAGCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACCCAAGACTTGTAACACGCATAACACAGTATGGGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAACATTTACTTCAAGCAAAAACATAATCTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGACAGAGGGCAGAAAATGGTAGAAATCGAAAAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGAGAAGAAGGTTACATTAAGCGTTTCCGGTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAGCTAAAGATTAAGAACTTGAGAAGCAAGTTAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACTGCAAGTGTAAATTTTGCTGTCGGTGTTCCGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTCATTACTGCCATTGCATTTGGGTCATTGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGGCAGGGCAATGTAATGCAATGGTTATGTTATGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCTATCATGAATGGTATTAATGCTCTTGTAACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAGACGAAGATTTACCATTTTGAAAGGAGAGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAGTAAAAGAGGCAGAGGTAAACTTTTGAAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAATATTGTTTTTGTTAATGAAGATAGGGGTAGTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTTGGAGAGTGGTGTATTTTCAAAGCAGGTGAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCGGCAGAACTGGGACGCATATAATAGATTTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAATCGCTTACTCTCGACAAATTCCTATGATGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTATTAGCATATTCAATATTTTTATTCTTATGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCATAAAGAACCTTCGACTTATCACCCCAATCTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGCATTGGCGATGTATGGATTAGTAATGTAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTAACATTACTCAAATTATAAGTGCCAAGACTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGATTGTGGTTGGAGTGCATGTTCAATATAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGAAGTATGGCCGACTTTGAGGTTATGCATAAGGCCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACTATCAGGAGGGCTATCCTCCAAAGGGTTTTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGCTTTTATTTTATCTTTTAAATGTAAACCTATACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTACAATTGTTCCTGTGTCATCAATTGTAATTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGAGGAGGTAATTCTATGTTACAAAAAGGAAGTACAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGTGTTGCTTCTCAAGGTGTTCCAATACTTTATTATCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATATTCTGTTTTTCCTGCTCCCATTGGACCAACTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCTTTTTCAGGATGTTCTTCTACTTCGGAATCTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATACTCCTGTCAACAAAGCAGGGGATACGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTCAGGTCGCAAGGAGGCCTAACGTTTAAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACAGCTTAAACGGGACATACAAAACAGCGAAATAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCTTTAAGTTTAGGTGAATTACCAACCATGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTTAATGCTTGTTCTTGTTATATTACAAAATAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTCTTCAGGAGTCGTTGCTTTTATAATTTTCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTCGCAACTTCTTCAACATCAAGTAAATAATTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTACCAACAGCATCCATTGCATAAAAGGAGGCATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAATTCCTGAACTGAAATATATTTCAGTTCAGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015555|3|2|2388534-2394161|CRISPRCasFinder
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAACGATGAAGAAAAAAGACTATATAAAGCTAGAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTTTAAAAAACTTATTATACGAAACAAATATTTCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGATGTAGAGGCTTTAGAAAAATATATCCATATTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGATTTTGAAAATGAAATATGTTATAATTTCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATTTTAAAAAAGGAGATTGATAAAAATGTTAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCGTAAAACTGATGCTTAACTCATCGCCTGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTTTAAGTTGCTCTAAGTTTTTGATTGCGTTGTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGGATGTTTTTTAATAAAGGCAGCTTTGTAGCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAAAATTCCTCTTTTATTTTTTTGCCTATTTTTAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTGCAAAAGTGACGTTAAAACTGTCTTTGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTATTTAAGACTTAACTATACTTTTGATGATAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAACAATTTGATCTGTCATACCACTAAAAGCAGTAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTGCATCTTTTTATCCCCTTTTATTTTTTTTCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTAATTCTTCTTCTTTTTCTAAAAAGTCATTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGCTGATGCAGTGTTTGCAGCGGTTACTGAGGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACACCAGCAAACATAAACGATCCTAATATAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGTTGCTACAAAAGTTGAATACTTTAGGGTGCCTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGGCTCTTGTGTCTCTGTTGTCATTAGTAATGTAATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGGTTTTTAAGGCATTTTTATATATATCCATACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTCGACGATAAATTTATATTCTGGTTTCTTCCACG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACTCACTCACGCCGTATTTGTCAAGCCAATTACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTACAAGCACAACATTTAATATGTCCGAAAGCGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAACACACGCACAACACAATGTCAACATACAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATGATATAATTCTTGTTGCTCAAGACTTGCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATATCCTGCTTTTAGCTATACCAGTATTTGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTGGTTTGACTGTTAGTCTTACTCACTATTCTGATCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTCTGTTCCAAATATAACGCAAGTTCAGACTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAAAAATTATCAACGACAAAAACGATGATTTGTATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAATATTATTCCAGCCTTGCACAAATTCTATGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTCTTGTTACTCGCAAGCTTTTTGGAGGTGCGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCTTAACCAATTTTAACACTTTATCCACCTCACTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCTTGATATATTGCTAAAAACTACTTCTTCGCTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGCAGACAATTACTTGACAAATAAAGAAATAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTCTAAGAGATTTAATCCTTTTACAACATCGTCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATTGTTAATTATGACGTTATTCAATATAAAGAAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATAAAATAAATGAAATTAGCAAAGAAGAATTAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCAAGCACAACATCACCACTTGAAGGACTTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGAAGTGGAGTATTACAAACGTGACAAAAATTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCAATATAATCATTTCCGTTAGACACTCTATTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTATAGCAAACGTTTGTCCTCTACCCAAATCCAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGATATATATTTTGAAAGACTGCAAAAAATTACTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCAGAAATAATTGTTTTAGAAGCGGTATATTGT
TTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAGACTTCCTAAAAAAGAGGTCTTTGCGTATGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTCTTGCTAAAAAAGGAGAAACGTCTGTAGCCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATTTTCCAATAGTTGCCTTGCCAACCATAGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTATTCACAAGGAATTAAAGCGACAACAAGGCAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAGTCATTCCAGGCAAGCCAGTGCCAGCAGCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACCCAAGACTTGTAACACGCATAACACAGTATGGGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAACATTTACTTCAAGCAAAAACATAATCTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGACAGAGGGCAGAAAATGGTAGAAATCGAAAAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGAGAAGAAGGTTACATTAAGCGTTTCCGGTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAGCTAAAGATTAAGAACTTGAGAAGCAAGTTAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACTGCAAGTGTAAATTTTGCTGTCGGTGTTCCGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTCATTACTGCCATTGCATTTGGGTCATTGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGGCAGGGCAATGTAATGCAATGGTTATGTTATGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCTATCATGAATGGTATTAATGCTCTTGTAACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAGACGAAGATTTACCATTTTGAAAGGAGAGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAGTAAAAGAGGCAGAGGTAAACTTTTGAAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAATATTGTTTTTGTTAATGAAGATAGGGGTAGTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTTGGAGAGTGGTGTATTTTCAAAGCAGGTGAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCGGCAGAACTGGGACGCATATAATAGATTTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAATCGCTTACTCTCGACAAATTCCTATGATGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTATTAGCATATTCAATATTTTTATTCTTATGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCATAAAGAACCTTCGACTTATCACCCCAATCTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGCATTGGCGATGTATGGATTAGTAATGTAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTAACATTACTCAAATTATAAGTGCCAAGACTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGATTGTGGTTGGAGTGCATGTTCAATATAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGAAGTATGGCCGACTTTGAGGTTATGCATAAGGCCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACTATCAGGAGGGCTATCCTCCAAAGGGTTTTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGCTTTTATTTTATCTTTTAAATGTAAACCTATACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTACAATTGTTCCTGTGTCATCAATTGTAATTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGAGGAGGTAATTCTATGTTACAAAAAGGAAGTACAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGTGTTGCTTCTCAAGGTGTTCCAATACTTTATTATCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATATTCTGTTTTTCCTGCTCCCATTGGACCAACTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCTTTTTCAGGATGTTCTTCTACTTCGGAATCTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATACTCCTGTCAACAAAGCAGGGGATACGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTCAGGTCGCAAGGAGGCCTAACGTTTAAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACAGCTTAAACGGGACATACAAAACAGCGAAATAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCTTTAAGTTTAGGTGAATTACCAACCATGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTTAATGCTTGTTCTTGTTATATTACAAAATAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTCTTCAGGAGTCGTTGCTTTTATAATTTTCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTCGCAACTTCTTCAACATCAAGTAAATAATTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTACCAACAGCATCCATTGCATAAAAGGAGGCATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAATTCCTGAACTGAAATATATTTCAGTTCAGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015555|3|1|2388534-2394161|CRT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAACGATGAAGAAAAAAGACTATATAAAGCTAGAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTTTAAAAAACTTATTATACGAAACAAATATTTCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGATGTAGAGGCTTTAGAAAAATATATCCATATTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGATTTTGAAAATGAAATATGTTATAATTTCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATTTTAAAAAAGGAGATTGATAAAAATGTTAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCGTAAAACTGATGCTTAACTCATCGCCTGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTTTAAGTTGCTCTAAGTTTTTGATTGCGTTGTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGGATGTTTTTTAATAAAGGCAGCTTTGTAGCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAAAATTCCTCTTTTATTTTTTTGCCTATTTTTAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTGCAAAAGTGACGTTAAAACTGTCTTTGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTATTTAAGACTTAACTATACTTTTGATGATAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAACAATTTGATCTGTCATACCACTAAAAGCAGTAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTGCATCTTTTTATCCCCTTTTATTTTTTTTCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTAATTCTTCTTCTTTTTCTAAAAAGTCATTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGCTGATGCAGTGTTTGCAGCGGTTACTGAGGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACACCAGCAAACATAAACGATCCTAATATAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGTTGCTACAAAAGTTGAATACTTTAGGGTGCCTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGGCTCTTGTGTCTCTGTTGTCATTAGTAATGTAATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGGTTTTTAAGGCATTTTTATATATATCCATACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTCGACGATAAATTTATATTCTGGTTTCTTCCACG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACTCACTCACGCCGTATTTGTCAAGCCAATTACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTACAAGCACAACATTTAATATGTCCGAAAGCGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAACACACGCACAACACAATGTCAACATACAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATGATATAATTCTTGTTGCTCAAGACTTGCGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATATCCTGCTTTTAGCTATACCAGTATTTGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTGGTTTGACTGTTAGTCTTACTCACTATTCTGATCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGCCTTCTGTTCCAAATATAACGCAAGTTCAGACTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAAAAATTATCAACGACAAAAACGATGATTTGTATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAATATTATTCCAGCCTTGCACAAATTCTATGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTCTTGTTACTCGCAAGCTTTTTGGAGGTGCGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCTTAACCAATTTTAACACTTTATCCACCTCACTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCTTGATATATTGCTAAAAACTACTTCTTCGCTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGCAGACAATTACTTGACAAATAAAGAAATAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCTCTAAGAGATTTAATCCTTTTACAACATCGTCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATTGTTAATTATGACGTTATTCAATATAAAGAAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATAAAATAAATGAAATTAGCAAAGAAGAATTAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATCAAGCACAACATCACCACTTGAAGGACTTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGAAGTGGAGTATTACAAACGTGACAAAAATTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCAATATAATCATTTCCGTTAGACACTCTATTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTATAGCAAACGTTTGTCCTCTACCCAAATCCAAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGATATATATTTTGAAAGACTGCAAAAAATTACTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCAGAAATAATTGTTTTAGAAGCGGTATATTGT
TTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAGACTTCCTAAAAAAGAGGTCTTTGCGTATGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTCTTGCTAAAAAAGGAGAAACGTCTGTAGCCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATTTTCCAATAGTTGCCTTGCCAACCATAGCAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTATTCACAAGGAATTAAAGCGACAACAAGGCAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAGTCATTCCAGGCAAGCCAGTGCCAGCAGCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACCCAAGACTTGTAACACGCATAACACAGTATGGGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAACATTTACTTCAAGCAAAAACATAATCTTTTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGACAGAGGGCAGAAAATGGTAGAAATCGAAAAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAGAGAAGAAGGTTACATTAAGCGTTTCCGGTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCAGCTAAAGATTAAGAACTTGAGAAGCAAGTTAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACTGCAAGTGTAAATTTTGCTGTCGGTGTTCCGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTCATTACTGCCATTGCATTTGGGTCATTGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGGCAGGGCAATGTAATGCAATGGTTATGTTATGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGCTATCATGAATGGTATTAATGCTCTTGTAACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAGACGAAGATTTACCATTTTGAAAGGAGAGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAGTAAAAGAGGCAGAGGTAAACTTTTGAAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAATATTGTTTTTGTTAATGAAGATAGGGGTAGTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTTGGAGAGTGGTGTATTTTCAAAGCAGGTGAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCGGCAGAACTGGGACGCATATAATAGATTTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAATCGCTTACTCTCGACAAATTCCTATGATGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTATTAGCATATTCAATATTTTTATTCTTATGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCATAAAGAACCTTCGACTTATCACCCCAATCTAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGCATTGGCGATGTATGGATTAGTAATGTAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGTAACATTACTCAAATTATAAGTGCCAAGACTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGATTGTGGTTGGAGTGCATGTTCAATATAAAGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGAAGTATGGCCGACTTTGAGGTTATGCATAAGGCCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACTATCAGGAGGGCTATCCTCCAAAGGGTTTTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGCTTTTATTTTATCTTTTAAATGTAAACCTATACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTACAATTGTTCCTGTGTCATCAATTGTAATTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAGAGGAGGTAATTCTATGTTACAAAAAGGAAGTACAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGTGTTGCTTCTCAAGGTGTTCCAATACTTTATTATCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATATTCTGTTTTTCCTGCTCCCATTGGACCAACTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTCTTTTTCAGGATGTTCTTCTACTTCGGAATCTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCTATACTCCTGTCAACAAAGCAGGGGATACGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTCAGGTCGCAAGGAGGCCTAACGTTTAAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTACAGCTTAAACGGGACATACAAAACAGCGAAATAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCTTTAAGTTTAGGTGAATTACCAACCATGTACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTTAATGCTTGTTCTTGTTATATTACAAAATAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTCTTCAGGAGTCGTTGCTTTTATAATTTTCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATTCGCAACTTCTTCAACATCAAGTAAATAATTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTACCAACAGCATCCATTGCATAAAAGGAGGCATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAAATTCCTGAACTGAAATATATTTCAGTTCAGGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015555.1\|WP_013789003.1\|2387645_2388149_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015555.1\|WP_013789000.1\|2384643_2386212_-\|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl\|CDD\|238504
NC_015555.1\|WP_013789004.1\|2388185_2388491_-\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013789010.1\|2401019_2401391_-\|hypothetical-protein	csm2gr11	mkCas0101_csm2gr11_CAS-III-D	unknown
NC_015555.1\|WP_013789009.1\|2400126_2400867_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_015555.1\|WP_013788995.1\|2377338_2379027_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NC_015555.1\|WP_013789011.1\|2401404_2402259_-\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_015555.1\|WP_013789001.1\|2386380_2386644_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015555.1\|WP_013789013.1\|2403017_2403767_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_015555.1\|WP_013789012.1\|2402245_2403025_-\|CRISPR-associated-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_015555.1\|WP_013789006.1\|2396665_2397379_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_015555.1\|WP_013789007.1\|2397443_2398355_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|274217
NC_015555.1\|WP_013789005.1\|2394324_2396688_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_015555.1\|WP_013788996.1\|2379047_2379896_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NC_015555.1\|WP_013789008.1\|2398354_2400112_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	gnl\|CDD\|378190
NC_015555.1\|WP_013789014.1\|2403772_2404243_-\|hypothetical-protein	csm2gr11	mkCas0079_csm2gr11_CAS-III-D	unknown
NC_015555.1\|WP_013789002.1\|2386656_2387649_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_015555.1\|WP_083815361.1\|2384025_2384457_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_015555.1\|WP_013788998.1\|2381806_2384032_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_015555.1\|WP_013788997.1\|2379935_2381807_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015555.1\|WP_013789003.1\|2387645_2388149_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2e-49	162.6	0.1
NC_015555.1\|WP_013789006.1\|2396665_2397379_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	6.2e-44	145.0	2.1
NC_015555.1\|WP_013789009.1\|2400126_2400867_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	1.2e-44	147.7	6.0
NC_015555.1\|WP_013789011.1\|2401404_2402259_-\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-38	128.4	1.0
NC_015555.1\|WP_013789001.1\|2386380_2386644_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9e-32	103.9	2.4
NC_015555.1\|WP_013789013.1\|2403017_2403767_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.8e-54	179.1	0.0
NC_015555.1\|WP_013789012.1\|2402245_2403025_-\|CRISPR-associated-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	3.4e-33	109.6	0.2
NC_015555.1\|WP_013789014.1\|2403772_2404243_-\|hypothetical-protein	csm2gr11	mkCas0079_csm2gr11_CAS-III-D	7.3e-53	172.9	10.3
NC_015555.1\|WP_013789007.1\|2397443_2398355_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	2e-88	291.1	1.3
NC_015555.1\|WP_013789005.1\|2394324_2396688_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	7.9e-54	177.8	31.2
NC_015555.1\|WP_013789008.1\|2398354_2400112_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	8.8e-142	468.4	26.1
NC_015555.1\|WP_013789002.1\|2386656_2387649_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	2.8e-142	468.3	9.0
NC_015555.1\|WP_013789010.1\|2401019_2401391_-\|hypothetical-protein	csm2gr11	mkCas0101_csm2gr11_CAS-III-D	1.1e-65	213.8	3.7

Protein	Function_ID	Function_description	E-value
NC_015555.1\|WP_013789003.1\|2387645_2388149_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.55322e-64
NC_015555.1\|WP_013789000.1\|2384643_2386212_-\|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	8.30214e-154
NC_015555.1\|WP_083815361.1\|2384025_2384457_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.04494e-22
NC_015555.1\|WP_013789009.1\|2400126_2400867_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.70012e-40
NC_015555.1\|WP_013788995.1\|2377338_2379027_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NC_015555.1\|WP_013789011.1\|2401404_2402259_-\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.07703e-17
NC_015555.1\|WP_013789001.1\|2386380_2386644_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.91986e-34
NC_015555.1\|WP_013789013.1\|2403017_2403767_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.28713e-48
NC_015555.1\|WP_013789012.1\|2402245_2403025_-\|CRISPR-associated-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.05371e-31
NC_015555.1\|WP_013789007.1\|2397443_2398355_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|274217	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.	9.94676e-89
NC_015555.1\|WP_013789005.1\|2394324_2396688_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.52185e-47
NC_015555.1\|WP_013788996.1\|2379047_2379896_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	4.13271e-137
NC_015555.1\|WP_013789008.1\|2398354_2400112_-\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	2.06283e-158
NC_015555.1\|WP_013789002.1\|2386656_2387649_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.45872e-175
NC_015555.1\|WP_013789006.1\|2396665_2397379_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.64651e-36
NC_015555.1\|WP_013788998.1\|2381806_2384032_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.10804e-159
NC_015555.1\|WP_013788997.1\|2379935_2381807_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0

>NC_015555.1|WP_013789004.1|2388185_2388491_-|hypothetical-protein
MDKKHLIKGYDIFVNGEWDLSPFEHLYELECRDVIQEHINDFNETEKEEIKKLEEILVKRAPLFYKALKGFLKAKQKNKPKSHWWWYLDEIADNKLKPQIK
>NC_015555.1|WP_013789003.1|2387645_2388149_-|CRISPR-associated-protein-Cas4
MYGYEDVTGSLIQSYSICKRQVWLMAHQIIPDQEHPYIEMGRLIDDISYDRDRKKINFENVVIDLVRNDNGNLLVGEIKKSSKALDSARLQLLFYLYKLKQNGIEAKGQLFFPEERKKIDVFLTSELEAGVVSVINEIRDIINMDKAPAFKKIPYCKNCGYKEFCLS
>NC_015555.1|WP_013789002.1|2386656_2387649_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKPVYIFSDGELHRKDNTLYFEGENGRKFIPVENTSEIMIFGEVSLNKRFLEFISQSEIILHFFNHYGYYVGSFYPREHLNSGYMILKQAENYIDEKKRLYIAQKFVEGAYRNIRQVLKYYQNRGKSLDDIIYAIERLGDMIDGTSDINELMAIEGNIREYYYKSFDEILGNGDFEFDVRSKRPPKNSLNVLISFGNSLMYTTVLSEVYKTHLDPRIGYLHSTNFRRFTLNLDISEIFKPIIIDRVIFTVIGKNVIKKDDFDEDAEGLLLKDKAKMAFIEEYENKLKTTINHRSLGNNVSYRRLIRLELYKLEKHLMEEQKYTPFVAQW
>NC_015555.1|WP_013789001.1|2386380_2386644_-|CRISPR-associated-endonuclease-Cas2
MFIILVYDVNEKRVNKVLKTCRKYLNWVQNSVLEGEISDANFRKLKSEISRIINKDEDSVIIYILRTTKYSDREIIGLEKGGESLFV
>NC_015555.1|WP_013789000.1|2384643_2386212_-|ClC-family-H(+)/Cl(-)-exchange-transporter
MEGGSRIYEMLKNRENFKDRLILEGIVVGVLIGLVVSLLRFMLEKTGIYLLSMYKLLETKIYLLPIWLIFLVAIGIFTNYILKLEPMISGSGIPQVEGTIIGYFKLNWLRIFVLKFVGTILMIGVGLSLGREGPCVQLGASLGQGVSRSLKRMRFEEKYLITCGAGAGLAAAFNAPLAGVIFSLEELHKNFSPIVLVSSMVSSLTATYVADTFLGLKTVFDITNMPIVPFSQYFYLLLLGVIIGFGGIIFNKSLLKAQDLYNKYVKMPQLKVFVPLLLSVIVGLFLPMVLGGGEGLVDKISGADLGFAFVVILLISKFLFTIISYGSGVPGGIFMPLLAIGALIGNLYGITIIHAFNINSIYLKDFVVLAMAGYFAAIVRAPITGSLLVTEMTGSFSHLLALSTVSITAYIVSGLYGNEPIYESLLDRIIKSKGNMANIDENDDVAKILFEMPVAVGSFVDGKKLKDIEWPHSCLVVGIKRGGKEIIPKGNTKILAGDYIVLLGNEKDVVNIKNNIRKMTEM
>NC_015555.1|WP_083815361.1|2384025_2384457_-|MarR-family-transcriptional-regulator
MNMIHKNMESEFKDLKITGPQGMIIGILMQHGEMKISDLSEKMGLSSSTVSGIVDRLEKQGMVKRIRSSDDRRVVYVKVDEDFKKRSKESFKNIYERFEAIMSKATDEEHADIVKGLNTLKKLIESSSGQSSDNFKKGGFDGC
>NC_015555.1|WP_013788998.1|2381806_2384032_-|ABC-transporter-ATP-binding-protein
MLKLRKYFKPYIFITIVAILFIFVQAMSDLSLPDYMSNIVNQGIQQGGIVNAVPDAVRKSTMDKLTLFMNDSDKNNVLNYYVLVDKNSSDYDKYVKKYPDLKKEPIYVLKNIDKSEIDKINLPMGKAFLAVSGVEKMKSNAKGGFITFNNMKIPANADLFALFARIPESERQKITDDMNKKFTSLGDNMVIQAATSAVKSEYKALGVNTDKIQTNYILSTGLIMLLITLLSAACSIMVGFLGSRVAAGFSRDIRKNLFTRVESFSNEEFDKFSTASLITRTTNDITQIQMLIVFMIRMIFYAPMIGIGGVIRAIGKSASMSWIIALAVIVLLGLVSTVFSIALPKFKSVQKLVDRLNLVARENLAGMMVIRAFNTQEFEENRFDKANRDITSTMLFINRVMITMFPVMMLIMNGITLLIVWVGAHDIANSSMQVGDMMAFMQYAIQIIFAFLMMSMMFIMIPRASVSASRIAEVLETQPTVVDPKESKKFDDTQKGVVEFRNVSYRYPGAEEDAIKDITFKAEPGKTTAIIGSTGSGKSTLVNLIPRFYDATEGQVLVDGVDVRDVKQHDLREKIGYVPQKISLFKGTVMSNIKFGNENATDEEVKKAAEVAQAAEFIERLPNGYDSEISQDATNISGGQKQRLSIARALVKKAEIYIFDESFSALDFKTDRALRKALKEYTENSTVIIVAQRISTIMNADQIIVLDDGKIAGIGTHEELMKSCETYREIAYSQLSKEELA
>NC_015555.1|WP_013788997.1|2379935_2381807_-|ABC-transporter-ATP-binding-protein
MDGRNANTPRRPVMRRHGPMGGHGPMVGGEKANDFKGTMKKLMKYLGEYKLSIFFVILFAAGSAALSIAGPKILSKAITKLYEGVMAKIAGTGNIDFDYIGRIILLLIGLYILSSGLGYIQGWIMTNVAMKVTYKFRRDIMEKINRMPLKYFDGTNHGEILSRITNDVDTISQTLNQSITQIITSVTSVIGALIMMLTISVEMTGVTFLMIPISMGIIALIVRFSQKYFREQQDYLGHVNGHVEEMYGGHVVMKAFNYEERSVRKFDEYNNELYKVAWKSQFLTGLMMPIMNSVSNLGYVGVVVLGSYLVINGTIQVGDIQAFIQYVRSFTQPLAQIANISNILQQTAACAERVFEFLDEEEEVPETEHPVKLENVEGHVQFDHVHFGYKPDKIIINDFSADIKPGQKVAIVGPTGAGKTTMVKLLMRFYDVNSGRILIDGHDIREFTRSDLRSLFGMVLQDTWLYNGTIMDNIRYGNLNATDEEVIKAAKAAHVDHFVHTLPEGYNMILNEEASNVSQGQKQLITIARAILKDPKILILDEATSSVDTRTEILIQKAMDNLMKNRTSFIIAHRLSTIRDADLILVMDHGDIVEQGTHKELLAKGGFYAKLYNSQFEDEEVAS
>NC_015555.1|WP_013788996.1|2379047_2379896_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MNTAFETYETAWCPGCGNFGILNALKDALTELGLKPHQVVIASGIGQAAKMPHYISVNGFNGLHGRALPPATAINIVNKDLKVIIDSGDGDTYGEGGNHFIHAIRRNANIAHFVHDNQIYGLTKGQASPTTAKGQKTSLQFDGVILDPVKPIKLALTMGAGFVARSFSGNYEHLKKMMKEAIMYDGYALLDIFQPCVTFNRVNTFKWYNDRVYELPDDYDYTDLDNAFKVADEWGDRIPIGIIYKVKKPTYIDNIGFLKDGPPLVDAKLDPMMAEKYLDDFR
>NC_015555.1|WP_013788995.1|2377338_2379027_+|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MDYNVLIGGAAGQGIDTLSYIIEKALKRCGLYVFSTKDYMSRVRGGHNFIQVRFGDKPIYSHDEKFDAIIALDEDTVNLHSKSLKPSGKLILDKSLSNNSAYMSFDFKEVAKECGNPRVLGTAAVGVLLKLFGIPLDVSHTVLNDEFKGDVLNANLKAIDAGYSMAKQIFNVPLGKKDDNIYISGNEAIALGAIAAGVKFYSGYPMTPSTSVMIYIAKKSHDAGIVVEQVEDEISAINMALGASYAGVRAMTGSSGGGFALMVEGISLAGITEIPIVITEVQRPGPATGFPTRTEQGDLRFIIHSGHGEFPKMVISLRNPEDAFYQTARAFNIADKYQVPVILVSDQYLADSGVTVKPFDFTKIKIERYISGDEALENGVYKRYKLTESGISPRIIPGKVEGATVLIDSDEHDEFGHITESQDVRVKMVNKRMKKFKLLKEEIQEPLFMGAENPDVLITCWGSTYGPVKEAVDMLLKDGMSVGALSFGDIWPFPTKLIKKYGKFAKMIIDVEQNATAQLDSLMRENALIKADEHILKYDGRMMSSKYIYDKVREMTKSSSLY
>NC_015555.1|WP_013789005.1|2394324_2396688_-|CRISPR-associated-helicase/endonuclease-Cas3
MNTSCFSELYSHPDKYLEEHLVGCAELAEKFLGEAKVNLMDEELLSSLIKIVALCHDLGKSTSFFQEYLTSQDDNKKKDLKSKKETHHSLISAIIAYFAVKQEISGLDIDNDTKILLPFISYIAVKKHHGNLNDVVTEASLEDSDIEIMKSQLQSIDDIKFKILSDNLRKVGLNIDLNKTTVANNIEDIKNEMRSIRLYLRKIRQKEDLTYYILINYVFSLLIDADKSEVVIGKISSSYTELMDDAVDKYKSKIRYKDSKINVLRENAYREVNENEINVDERILSINLPTGLGKTLASISFALKLKKKLHDVYNKKFRIIYSLPYLSIIEQNYQEFEKILKTNNINVNTSVLLKHHHLSEVKYSDDETEFDTEKSKIMIEGWNSEIIVTTFIQLFHTFLSNRNSALRKFHRIANSIIILDEVQSIPFYYWKLVKEVLKAVAYKLNSYIIFVTATQPMIFDDNEVRQLTDKTRYFNQMNRVVIKPVFQKDMHLDELIDVFDLKDGRSYLFILNTISSARQFYQLLKEKLPDEEIIYMSTHVIPHERLERINLLKTKSIKYAVTTQLVEAGVDIDFDVVVRDLAPMDSINQSAGRCNRNWEKKGEVYVVSLIDEKNRKYALRIYNKVMLNITERILSEYEIISEKDFLDIIDRYYREISQNLSSKETIDILDAVFKLRYDSDDGMPSISKFKLIDDEYYKVDVFIEYNEEAIELWQRYIDLKKIKNLFKRRSIFDEFKADFYKYVISIPEKTENMPAEVEGFKYVNAASLKDYYDSETGFKTSDVLSIW
>NC_015555.1|WP_013789006.1|2396665_2397379_-|type-I-B-CRISPR-associated-protein-Cas5
MKLLIFDVYGDFGHFKKYYTTSSPLTFSFPPPPTIKGLIGAIEGIGKKDYLKVLSSEKCKLAVRILNPVKKIRMGLNLINTKDNFWIPFKKKNHEARTQVKMELLKDPMYRIYFYHTDEDLFNDIIEKLKNHQNVYTVSLGLSEMIADYRFVGVKDAFEEKNSEVFVSSVLPYKYILEDKIVFEDGKKYFKEKIPADMDEERIVLDYADVVYEANGKSIRSYVSSSWVIDDEHIVFF
>NC_015555.1|WP_013789007.1|2397443_2398355_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MSNIINNRSEILFLYDVSFANPNGDPVDENKPRIDEETGINIVTDVRLKRTIRDYLAEYKGMDVFILETRDESGKLRTKDDRISDFGSNDDIINKCIDVRLFGATTAVKDKTMTLTGPVQFGFGRSLHKVNMTYIKGTTVMPSQSGNSQGTFTEKYILPYSLISFYGIVNENAAKNQNIPLTDDDVDLMLEAMWNGTKNLMSNSKMGHMPRFLLQVVMKEKNYQIGELNKRIKFVHNVEDEELRDIKDGRIEIKELIESLNANKGKIEKLRYAVDERAVFAVDGVACDFGDVVKDFPVEKLGF
>NC_015555.1|WP_013789008.1|2398354_2400112_-|TIGR02556-family-CRISPR-associated-protein
MLDAVKDIGEMSISTGRKSLLDVLIEDPNQNGSYKNVIAINFTVDGDDVKYKDVTIEETDSQKISRYLYSSAGGNGPGYMPVAKITEPDKTFNGKILSWFKILSKKGLNIDEDERRFLENLNSAIQENKDEILEKIIKFRGEFPKKDGLLLMLKFVEGSTYKYIGDIPLFRKLLVDTDNEKYNKLSANDKVCSICGEKKDLVFGKVDTYAFYTIDKTGYIVGGFDEKKSWRNFPVCPDCRLKLEEGKKYIENNLTFKFYGLKYQLIPKFLIGERFVKEEILDIFKETTRLVSLKESTKKRVITDEDDIMYFLKDADDSISLNYLFIEKQNSAERILLLIEDVFPSHIREIFKAKDTVDGIFNENFTFRNIRNFLSKSDMKKRDSDLDGYFLDLTDRIFRGRKIDINLILKFIMKRVRDEFIQNKYYQSAIKDGMMAIKFLQNLGLVEMEVKAMEERPLSDFFKKYEENFETPIKRGLVLLGALTELLLRKQCKDRGAKPFMKNLKSLKMDEKDIRGLLPKVQNKLEEYDSFDKGKRLLAKEVSNYLLLAGDDWHMPVDEINFYFACGLNLADEIASIIYSKEEEQ
>NC_015555.1|WP_013789009.1|2400126_2400867_-|CRISPR-associated-endoribonuclease-Cas6
MRVVLEFSGDKELRLPIQYNHIVQGFIYNSMTDGDFSAFMHDEGFKYGKRQFKLFTYSRLEGEFRLLKREDKILLKPPFKLTVSSPIDEFIYDISQNIFKKDYCVFNNQTFKLNSINIENPPVFREKARIKFLSPVVTYSTIEDKGVRYTYYYSPWHENFSDILLKNLLKKYEVIYGEEVEDPYFKLYPIGDENMKYQKVMKYKNTVIKGWMGIYDVECSPDLLKVAYYSGLGAKNSQGFGCFEIL
>NC_015555.1|WP_013789010.1|2401019_2401391_-|hypothetical-protein
MKDGLYDMAVNMGQYFVKNKLTNILDVVINLFESARKTSANENEAKTKFFSMLNLINKDPFMLGGGKPYKEAFKKFVEGYLSIFKNAECRNRDFARLTTDEMFYVLCWANRYVKSFEHSKRSS
>NC_015555.1|WP_013789011.1|2401404_2402259_-|hypothetical-protein
MKPYNFVPILGAKKYVKSHELKSGKVRVSIEVVTPVHIFSGYYNENGSTVYREFAKYNGKYIIPGSSLKGCARAIAESVSRSCISTKQDIRKIGKDIKDQNDCIICDMFGSLGKKSRLRFTDLVLVKNSGVDIINIPAFYGPKPENKNYYDADGKFKGVKFYNHGDVNIIEKGTIPCEFVMPGSIFEGDVFFDDLDDNELDLLCFSLGLSGDIYLKLGYGKPAYYGSVKVKSIDDDIDALKRANRYGENDGDVAKNVKRLKELLSWDKRHTKSVWHTVNNQRGY
>NC_015555.1|WP_013789012.1|2402245_2403025_-|CRISPR-associated-protein
MFKELHNEGYLKFYLKTMSPLSIKAADNNDFDPTVPDNKFLRSYKDGKLTVVMPGSSIKGVFRSRAEKKLKGCDIFGSEYCGKKLSSSMDGKERYKESCPACKMFGNTALKSRILFKDAYPIGEVKMGKRKNVAIDRITGASKRNALFEPEVVEDGTFECEIKMENVFNWQIKVLTEILDEIDDGYVVFGGITSRGFGRMAVQNVQFTMRYYDRKNISGYDDYGFYIERKFDREMLREKLSKLALDDECFGKVEFDETL
>NC_015555.1|WP_013789013.1|2403017_2403767_-|CRISPR-associated-RAMP-protein
MFDKFENRYIVKGTIVALKPIHIGKGQESMDPTEVDSPVIKDENGRPLIPGSSLKGVLRSFVERVLSSGAFEGYRSCLIVNDEPCVNGDYVKKLKDKYDKDYKKIAEEIYERSCNVCRLFGSNNLAAKLTIKDLNSIDEKTFFDMRDGVGIDRDTGTAKDGKKYNYEITPSGTKFELYMTGDNLDDDDLELLKLCLNVLKNGQISVGGMTSRGLGTVKLIDEKIYKVDKSNLKEYVSNGLSEEMRWNDV
>NC_015555.1|WP_013789014.1|2403772_2404243_-|hypothetical-protein
MNISKELKQKLIEYSDEIASKKDFLSIHTNDEKGREKDKIGISQYRTLAEIASNIDSYDEFELYIKYKESKRNGWDNIFDGMKYGDKIIEYMRKIKNDATEDILPKALSLFFGYLYWQSSYRVKPIRTDASQNNTGFGKQNNNSKNGNKYYNSNKR

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Crispr_ID: NC_015555_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015555_4

2457993-2458851

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
GTTTCAATTCCACTATGGTTAGATTAAATC	CRISPRCasFinder
GTTTCAATTCCACTATGGTTAGATTAAATC	PILER-CR
GTTTCAATTCCACTATGGTTAGATTAAATC	CRT

12 spacers

cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2

The CRISPR arrays of NC_015555_4

>merge|NC_015555|4|2457993-2458851|CRISPRCasFinder,PILER-CR,CRT
GTTTCAATTCCACTATGGTTAGATTAAATCGAGCCTTGACAGTAGAGGAAGCGAACTTAATCCACATGTTTCAATTCCACTATGGTTAGATTAAATCTGAAAGTATGCCAGATAAAGACGCAATTCTTATTATAGTTTCAATTCCACTATGGTTAGATTAAATCGACGAAGCAGTAAGCAAGGTATATGAAATACGGGACATTTGCACTAAAAAAATAAAAGAAGAAATAGACAGGTTTCAATTCCACTATGGTTAGATTAAATCCAAAAATATGAGAAACCTAATACGACAGCACAGATATTCGTTTCAATTCCACTATGGTTAGATTAAATCTTGCAGCTGTTATTGCTAATCCAATGATAGCAGTAGTTTCAATTCCACTATGGTTAGATTAAATCGGAGCTGCGGCTGGCGATATTTTATTAGGTGCTCCGTTTCAATTCCACTATGGTTAGATTAAATCTACTCGTCGGCACACTTGCAGGAATAGCATTTCCATGTTTCAATTCCACTATGGTTAGATTAAATCTCTCCAACCGTGCAAGAACAGATGCAGAAATAGCACGTTTCAATTCCACTATGGTTAGATTAAATCCAACATAAATGTTAAAAGACAATGCAGGTATACCTGTGTTTCAATTCCACTATGGTTAGATTAAATCTTGCAGTTGTGGCTGTTGCTGCTGCATAAAATAGGTTTCAATTCCACTATGGTTAGATTAAATCATTCCTTTCGCCAGCTCTACTAAAATCAATACTTTTGTTTCAATTCCACTATGGTTAGATTAAATCCTAAATCACTTTTAACACAACTAAAATCAATATCCAGTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|4|3|2457993-2458851|CRISPRCasFinder
GTTTCAATTCCACTATGGTTAGATTAAATC	GAGCCTTGACAGTAGAGGAAGCGAACTTAATCCACAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGAAAGTATGCCAGATAAAGACGCAATTCTTATTATA
GTTTCAATTCCACTATGGTTAGATTAAATC	GACGAAGCAGTAAGCAAGGTATATGAAATACGGGACATTTGCACTAAAAAAATAAAAGAAGAAATAGACAG
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAATATGAGAAACCTAATACGACAGCACAGATATTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGCTGTTATTGCTAATCCAATGATAGCAGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGAGCTGCGGCTGGCGATATTTTATTAGGTGCTCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTCGTCGGCACACTTGCAGGAATAGCATTTCCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTCCAACCGTGCAAGAACAGATGCAGAAATAGCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CAACATAAATGTTAAAAGACAATGCAGGTATACCTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGTTGTGGCTGTTGCTGCTGCATAAAATAG
GTTTCAATTCCACTATGGTTAGATTAAATC	ATTCCTTTCGCCAGCTCTACTAAAATCAATACTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CTAAATCACTTTTAACACAACTAAAATCAATATCCA
GTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|4|3|2458228-2458851|PILER-CR
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAATATGAGAAACCTAATACGACAGCACAGATATTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGCTGTTATTGCTAATCCAATGATAGCAGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGAGCTGCGGCTGGCGATATTTTATTAGGTGCTCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTCGTCGGCACACTTGCAGGAATAGCATTTCCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTCCAACCGTGCAAGAACAGATGCAGAAATAGCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CAACATAAATGTTAAAAGACAATGCAGGTATACCTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGTTGTGGCTGTTGCTGCTGCATAAAATAG
GTTTCAATTCCACTATGGTTAGATTAAATC	ATTCCTTTCGCCAGCTCTACTAAAATCAATACTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CTAAATCACTTTTAACACAACTAAAATCAATATCCA
GTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|4|2|2458228-2458851|CRT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAATATGAGAAACCTAATACGACAGCACAGATATTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGCTGTTATTGCTAATCCAATGATAGCAGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGAGCTGCGGCTGGCGATATTTTATTAGGTGCTCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTCGTCGGCACACTTGCAGGAATAGCATTTCCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTCCAACCGTGCAAGAACAGATGCAGAAATAGCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CAACATAAATGTTAAAAGACAATGCAGGTATACCTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGCAGTTGTGGCTGTTGCTGCTGCATAAAATAG
GTTTCAATTCCACTATGGTTAGATTAAATC	ATTCCTTTCGCCAGCTCTACTAAAATCAATACTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CTAAATCACTTTTAACACAACTAAAATCAATATCCA
GTTTCAATTCCACTATGGTTAGATTAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015555.1\|WP_013789076.1\|2475339_2476356_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_015555.1\|WP_013789065.1\|2452296_2453277_+\|DNA-replication-protein-DnaC	unknown	unknown	gnl\|CDD\|235871
NC_015555.1\|WP_013789064.1\|2451332_2452304_+\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|377797
NC_015555.1\|WP_013789069.1\|2457728_2457983_-\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013789078.1\|2478081_2479134_+\|DUF1646-domain-containing-protein	unknown	unknown	gnl\|CDD\|285138
NC_015555.1\|WP_013789075.1\|2474685_2475333_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	COG1688_cas5_CAS-I	gnl\|CDD\|273860
NC_015555.1\|WP_013789074.1\|2472497_2474714_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015555.1\|WP_013789066.1\|2453273_2454716_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341067
NC_015555.1\|WP_013786953.1\|2456871_2457312_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_015555.1\|WP_013789063.1\|2449945_2451151_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_015555.1\|WP_013789067.1\|2454855_2455467_+\|sporulation-membrane-protein-YtaF	unknown	unknown	gnl\|CDD\|274321
NC_015555.1\|WP_013787204.1\|2458949_2460323_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_015555.1\|WP_013789068.1\|2457496_2457676_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_015555.1\|WP_013789070.1\|2469952_2470708_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|187889
NC_015555.1\|WP_013789072.1\|2470983_2471976_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_015555.1\|WP_013789077.1\|2476374_2477754_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_015555.1\|WP_013789073.1\|2471987_2472479_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015555.1\|WP_013789061.1\|2448294_2448990_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_015555.1\|WP_013789071.1\|2470718_2470982_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_015555.1\|WP_013789062.1\|2448996_2449812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290220

Protein	Function_ID	Function_description	E-value
NC_015555.1\|WP_013789076.1\|2475339_2476356_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.34237e-62
NC_015555.1\|WP_013789065.1\|2452296_2453277_+\|DNA-replication-protein-DnaC	gnl\|CDD\|235871	PRK06835, PRK06835, DNA replication protein DnaC; Validated.	3.82684e-156
NC_015555.1\|WP_013789064.1\|2451332_2452304_+\|DnaD-domain-protein	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	8.12413e-26
NC_015555.1\|WP_013789078.1\|2478081_2479134_+\|DUF1646-domain-containing-protein	gnl\|CDD\|285138	pfam07854, DUF1646, Protein of unknown function (DUF1646). Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaebacterium Methanosarcina mazei.	2.27606e-117
NC_015555.1\|WP_013789075.1\|2474685_2475333_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	6.35344e-48
NC_015555.1\|WP_013789074.1\|2472497_2474714_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09195e-100
NC_015555.1\|WP_013789066.1\|2453273_2454716_-\|M1-family-metallopeptidase	gnl\|CDD\|341067	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains bacterial M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	1.1181e-168
NC_015555.1\|WP_013786953.1\|2456871_2457312_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.56944e-53
NC_015555.1\|WP_013789063.1\|2449945_2451151_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.74791e-50
NC_015555.1\|WP_013789067.1\|2454855_2455467_+\|sporulation-membrane-protein-YtaF	gnl\|CDD\|274321	TIGR02840, conserved_hypothetical_protein, putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein. [Cellular processes, Sporulation and germination].	2.31253e-37
NC_015555.1\|WP_013787204.1\|2458949_2460323_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.59885e-20
NC_015555.1\|WP_013789068.1\|2457496_2457676_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	0.00407422
NC_015555.1\|WP_013789070.1\|2469952_2470708_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.41367e-57
NC_015555.1\|WP_013789072.1\|2470983_2471976_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.54618e-174
NC_015555.1\|WP_013789077.1\|2476374_2477754_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	7.18729e-49
NC_015555.1\|WP_013789073.1\|2471987_2472479_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.26608e-62
NC_015555.1\|WP_013789061.1\|2448294_2448990_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.80876e-98
NC_015555.1\|WP_013789071.1\|2470718_2470982_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.03548e-25
NC_015555.1\|WP_013789062.1\|2448996_2449812_-\|hypothetical-protein	gnl\|CDD\|290220	pfam13485, Peptidase_MA_2, Peptidase MA superfamily.	1.85194e-05

>NC_015555.1|WP_013789069.1|2457728_2457983_-|hypothetical-protein
MSDYALNKKHLIDLRGKDKVIVFEKAWEYNKDNYKDLIKVVKDNPNNYPAVPKGELEYGKSYEITMMIKGSNGKTVKIKLSDNK
>NC_015555.1|WP_013789068.1|2457496_2457676_-|DUF4926-domain-containing-protein
MEIDELDVVKLKDGREGTVVHKYPAGILLQAYEIEFDDGETETIKEDEIDKVLWIAKAH
>NC_015555.1|WP_013786953.1|2456871_2457312_-|IS200/IS605-family-transposase
MQNYRKSSHATYDLKYHIVWITKYRKPVLVGKIAERTRELIRMVCKNNEVEILSGHVSKDHIHILVSAPPHLSVSKLVQYIKGYSSRKLLMENKELNKQFWGQHLWARGYFAASSGNVTDEVIIEYIQNQDIEENQKNDNFTLGEF
>NC_015555.1|WP_013789067.1|2454855_2455467_+|sporulation-membrane-protein-YtaF
MHFIYSLFIALANNIDNISVRIAYSVRGIKITAVKNLWISLITFIISSIAAMSGNIISGVLSKHISSILSMILFISIGLWIAIEPYFKKNSNSPYDMNDKAKNIYDILKKPEEADVDDSKDIDFKEATFLGIALSINNIGGGLSAGMIGLNSFFIGFLSALISFIALWIGNYVTDFLNRWNFRKKATVIAGLILILIGIKQII
>NC_015555.1|WP_013789066.1|2453273_2454716_-|M1-family-metallopeptidase
MKSKKYIWLVILVAAIGLLIYFAPIKNSNRTVYNMDLKYNDKDKTIIGTEVVDFINTYDVNLSEVYMHLYPNAFKDKSKVPFTKEEIGLAYPNGFKPGYIEINGVTFGKNEKATYSIDQKTGEILKILLPKKLEKGDRISFAIGFKVQIPPSCGRFGYGNNTIQVTNFYPILSVYDQNGWNNDPYYALGDPFYSDVSNYKVKLAVPKGMEVATTGVVKSKARQGDMDVLTIDAPNVRDFAVVMSSKFKVAEGDVDGIKVKSYYFDEDSGLKALKYAQDAIRFYNSYIGKYPYKEYSVVESDFYMGGMEYPNLVFISKDLYSKDNLFNLEYVIAHETAHQWWYGVVGNNEVREAWLDEGLTEYTTIMYIERYYGKATADAVFKSIISGEFYKFSKTNKDDGMVKTLGQFKDWNDYTNIVYNKGAMVFNELRNLIGDEKFKEVLDKYYSDYKYKNATTQNLIDVVDSVTGKDTGGFFEEWLD
>NC_015555.1|WP_013789065.1|2452296_2453277_+|DNA-replication-protein-DnaC
MNNLVQEVLREYDMLRDKSLKEALSRREEVYRKIPQISQIDDKIKEIGIEISKAIFLNPQNQKEFLENLRHKLIYLKKEKAGLLKLNGYPETYMEQEYECNICKDTGFVNNKRCRCFEQKLINLYYKQSSIEEITKIENFDNFDYHLYSDKPYKGKMSPRENIKSIVEVAKDFIDYFDVEKESLFFYGDSGLGKTFLSHCVAKELLDKGKVVLYRTAPDLVEGLRLNKLNSDNDSYYEYTDLLRECDLLIIDDLGTEPITPFSLQEIFSIVNARLLANKKFIISTNLPLSEVMNIYPERLCSRILGNFKLLNFYGDDIRIKRKTIN
>NC_015555.1|WP_013789064.1|2451332_2452304_+|DnaD-domain-protein
MSRCNFSNDFDDMGSTPVSNFFINHYMLEAPGEYVKVYLLGLKYSYYNQSFSMEEMADKLFMSENDIDKALKFWERSGVIRLRYSDNEYYIEYLPLVKKSDDVHTLSIDDTEVKQMFETVEKMIGRPLSPTEMNTYLSWVDEYGFSLEILTMLISYCVSKNKTSLKYMEKVAIAWHDAGLKTALDVEAYLKSESEKWIRYKKILRALGLKDDDVMEAHKAMMDRWMDDLGFDVDVIIKACDECVLKINEPSFPYINQILINWYNDGIRTVNDLDKIKKKPYTKKTTPNYKVPKNYFNGYSQRTYDVDELEKKLLAHSRGEFGE
>NC_015555.1|WP_013789063.1|2449945_2451151_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MDNEDKSNPFSCNLIKKVSIKRRFILTATLTILFAVVFYIGIDKSAFFSTEDQSLNHFAYSVEQGRFVRIDRPTAIVVDGFNVVTLKNREDALWVLNDILDKYKNGSMKVYFKNDVKLVEVDSPAVKIETVGEALKKLEGDDVETYTVKDHDTLWSISRKFSISLDDIYKLNPMVTTTIFKGQILKVKELKPVLTVVSERKIVYMDDIPHETVYQKDGDMFANASKVVANGEDGVKIVTAVLKYYNGQISEKDVINEEVVKDPADEIVSVGTKNLSTAIALDYPIRGHIVITSRYGQRWGRLHAGIDIAASMNDPIYAADGGTVVFAGWENGYGNLVEVDHGNGYVTYYGHASKLLVKKGDKVNKGQEIALVGMTGNTTGPHVHFEVRKNGVPVNPMMYLK
>NC_015555.1|WP_013789062.1|2448996_2449812_-|hypothetical-protein
MKKNKIIVAIVFIAFVLALLFNESILTKAYPVYKVIGKDKIEESVKNFKTKESKHFIVRYQDSDSKYVSLIIDTAEKHYYGVIKDLGYAPKDKSVIIVYSNPDEMNKDFSLAKGENAMGIYLNGVISIESPALWIPSGQDVTKVFQYEGPVVHEFTHLVVDDIAKGNYPTWFTEGIALLEEYRQDGYEWGKDLSYNGKPYTFDQLENNFDSLDEMLAYKRAFQVTKAISDKFGMETIREMLRDLGSGMSIESSFYKETGLKLDTFVNNVKG
>NC_015555.1|WP_013789061.1|2448294_2448990_-|response-regulator-transcription-factor
MSRILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDGFTVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGISNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEKVWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESEL
>NC_015555.1|WP_013787204.1|2458949_2460323_-|transposase
MNSITQNYQIDNKVSTSIKSFFKKYRISAALRLSNAYKSKGIPVISIFEYLFCMIFTNRSMYMNMLMGTNQVGFKKDTVYRFLNSIHINWIRFTTWLSAQIINETITGLTSDKRVNVLIVDDSLFERSSSKKVELLAKVYDHAKKTYKYGFRLLTLGWSDGNTFIPVNGCLLSTENQKNRINEAIPVDKRSAGYLRRNLSQTKATAVALELIKTAKKAMIPASYVLFDTWFCSPSSLIAIKEIGYDVIAMAKKTSKMHYLYNGIMQPLTEIYKQNRKRRGRSRYLLSVEVSIEKDGKSIPARIVFVRNRNNRKDYLALITTDMNLNEDEIIRIYGKRWDIEVFFKVCKSYLKLSKECNSLSYDAMTAHTAIVFTRYMMLALENRRSSDLRTMGEIFYYIQDEMSDITLIQAFHLLMQVFIDTITDKLSLSSEQLDQLLDAFMAAIPKELKERLPKCA
>NC_015555.1|WP_013789070.1|2469952_2470708_-|CRISPR-associated-endoribonuclease-Cas6
MRIKITLLPEEDKSLNINYNYFLSGWVYNTLKKANREFAEHLHEKGYKYGKKVFKLFTFSQLRSKKLKIIDDEIMFLDETYLYITSPKKEFMLNFVTEVLNNEFLKLQDYQFRIKSVEMLKEPEFSNREDKFICLSPIVMSTAIEIDGKRKSINLPLHDSQFIENIKNNLIEKYYVLYNTLPDNLNINIDFDVNYYMKNPNGKRIKFKNVYVKGYMVPFKMSGNPDLIKVAYECGLGEKNSAGFGMIQKIK
>NC_015555.1|WP_013789071.1|2470718_2470982_-|CRISPR-associated-endonuclease-Cas2
MYVLIVYDVDEKKVAKVNKYLKTYLNWVQNSVFEGELTEAQLNRIMLWFKGHLDLESDSVLIYTASSQKWLSKRIIGIEKNSTDNIL
>NC_015555.1|WP_013789072.1|2470983_2471976_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKSIYINTSGRLSRKDNTIFFESETFGKKFIPVNNVEEIFLFGEIDFNTKAINFLAQNNITVHVFNYYGYYSGSFYPREHLPSGFLLVKQVEKYKDDVERLNIAKEIINGASHNILKNIKYYANRKEGLDEFVERIENERKNLKDIKTINELMGVEGRIRNIYYSAFETIIDGKFVFKNRTMNPPDNPINALISFGNSMMYSIVLTEIYNTQLNPTISYLHEPGERRFSLSLDISEIFKPIIIDRIIFSLINQKMIREEHFDQDLELCYLNEKGRVIFQREFEEKLGTIIKHPGLNRSVSYRRLIRLECYKIIKHLLDEEKYESLKMWW
>NC_015555.1|WP_013789073.1|2471987_2472479_-|CRISPR-associated-protein-Cas4
MDLVTGTEINYYFVCKHKLWLFTHGINMEHNSDYVDIGNAIHEKSFQREDKEILLDERIKIDFIKNQMEIHETKKSKAMEEATKYQVLYYIYYLKTKGMENVKGVIHYMDNHSKEEINLSEEDENEIKKIIGEINKIKSADKPPAIVKSRVCTKCSYYELCFS
>NC_015555.1|WP_013789074.1|2472497_2474714_-|CRISPR-associated-helicase/endonuclease-Cas3
MGKKILAKSSKYGEETLIQHTQNALQVFESLKNAYPEVVEICNEEKFYEYLFTAIFLHDFGKAAEGFQRMLKEGKPWGYRHEIISAGFISCLSYPDDVRKDIALAIITHHRDLYELQESYSTLTISGKDNYVKRLKELDGNIKYLQYMIGEVPEWSKEYLGYEIRLKQVESIEEIQDVFYFAVREYLNDYEDKKVVKNKRKLFLRGFLTACDHLSSASQEEIIKAISDMEVLFKFDKYKDTQLKAMNTKGSAVLIAPTGYGKTEASLLWSNYNQNKSKGKRVFYVLPYTASINAMYNRLKNSFGDESVALLHGKAFYFLYKEFAKSGEDYFDAVNKAKTKYDLSKKIFKPYKVLTPFQILKYFFSVTGFEQHIGEMAGGLFIVDEVHSYDPHTTALILESLKYLKEEYKAEIFIMSATLPEFLKKLFMKELNIESLIEPNKEEIKAIARHKVSVIGGDVFFNISRIIKDIKEDKKVLIVCNTVDRAQKIYNELKKYTNKSVLLHSRFVLKDRERIENSLNKVQLLVGTQAIEVSLDIDFDILYTEPAPIDALIQRFGRVNRKGIKNASPVYIFSKGSEEDKFVYKNQKVVNTTLELLSNCNILSEDLIQNLVNETYKNGYDDKDYKEFLKARESFKSVISQLYPFIENKHLKEEFYEMFDNREVVPYIFKEEYIDKVKNKEYFEAAGYMVGISQRRYISLKKQGLIENNGYDVDFVYCEYDKDLGLLIGNTYDNIFTP
>NC_015555.1|WP_013789075.1|2474685_2475333_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLRVHLVGWTASFRYPIFITGYQPTLPVPPVSTIYGLISAAKGEYVTPLNTKVGYVMRSEAKGVDLETIYMLSSDNSAKSNVYKREFLLNPDLYVYLTDLSFKEIFKKPEYPLLLGRSSDLMMVEEVKEVDLMQKHGNKKVGGTVVPFEEEGIWGPLQALPMYFSNTIPREAIGIKPYYILKDFIEYNGDNFWYDDELDWGVYLHGQENISQK
>NC_015555.1|WP_013789076.1|2475339_2476356_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNNVNGFMLIDAPASALNNAGPDIGAKTENTIAVKKIRRGKGEYVYVSGQAFRFWMRSSLENVFGWELSPIEREAKIAFTAADPFKYPDDDVFGYMRAIGKKSGITLTRISPFKCSPLISVTPVNIVNDFGVMARHEGDPVPYEHEFYSTVLKGIFSLDLDSVGRFSSENKTGYMNITEAYKKEWEEYNCFVEEHGKIVTLPLEVRAKRASDLIGVLPYIFGGAKQTSHLTDVSPKFLVLAILNCGNNIFMNIAVDDKGEAAINVKALKEVIVDYRENIISDVYIGKREGFMDEYNEDLKRMVNELNDTLLKNIKVHLLTVNEAVSKFQQVVSGFYKR
>NC_015555.1|WP_013789077.1|2476374_2477754_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MNNIFTYTGNPFVDAGITAMLVWLDKGKPEEIEDYEVRSLFAELTDLYVQKSWNKIMYSIFPNSKLTNPSVKDKKGEYDKLLNELLSEVLVLGNSGNCIACGKRDSKRHFTKTQVPLTGTSDFMNFFSYGKGGADYCSACALAIQFSPLIFYKCGNLVCVQSNNKEAERIYAKKCKSFIDIQKATKNYTGCNDEGYTNPVNALFHLVTDIILTYDRREWYKENTNIRLYYFTNFNQPPLDNLSIYDMPDEIFKFLAYALQHEEKDNWKKVIKRGYFTTKKVNLDEEDEYKNLHNDVYERLLRGQSILRYFVDVNERKTLIKWGFLEYYMKEVRKMEAKRLDTIKKVADDIANVIKIRGNIKRLIQLENAKNYGEFRNVLRLIIKERISAGFEKPLFSIDEYEKYLFPEGNLSWRETQDLIIFRLYEQLHDWLINNDKEIKEDLVEEDETISKDEDIEMI
>NC_015555.1|WP_013789078.1|2478081_2479134_+|DUF1646-domain-containing-protein
MINAILFAILLIILTVPFFVKAIEDNIEYFLFVMGIIAVTVSGAMSLDLLSHILKNHLLYIITAAVFISGLLFEIFKIKIKEFVKSILNHISLKIFVFMLIVVLGLTSSIITAIVASLVLVEIVHILPIHHKDKVVITVIACLSIGLGAALTPVGEPLSTLVISALKKDFFYLLRTIGIYIVPAIFVMGILGAFYVNRFADNAKPKQEEEYFKEEEMEIRQIENIKFIVIRSIKIFIFLLALELLSAGFKPLVDNYVMHMNVRLLYWVNMISAVLDNATLAAAEISPAMDPEHIRAILMGLLISGGMLIPGNIPNIISAGKLEIKSKEWAKIGIPISMAVLVVCYIFVFI

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Crispr_ID: NC_015555_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015555_5

2460483-2469714

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
GTTTCAATTCCACTATGGTTAGATTAAATC	CRISPRCasFinder
GTTTCAATTCCACTATGGTTAGATTAAATC	CRT
GTTTCAATTCCACTATGGTTAGATTAAATC	PILER-CR

139 spacers

cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2

The CRISPR arrays of NC_015555_5

>merge|NC_015555|5|2460483-2469714|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATTCCACTATGGTTAGATTAAATCGTAAATATTATAAATGGTGTAATTTCTTTTTTTTCAAGTTTCAATTCCACTATGGTTAGATTAAATCATATATTGCATTAGCGAAAGCAGAATTAAACGATGAAGTTTCAATTCCACTATGGTTAGATTAAATCTACCTATTTGTTGTTCGACAGCCATTACAACATTTTGTTTCAATTCCACTATGGTTAGATTAAATCCTATTACTTTTGCCAAACTAACCACCTGCCTTTTCTAGTTTCAATTCCACTATGGTTAGATTAAATCTTCCTGAAAATAAGTAATTACTACCGTTAACATATGTTTCAATTCCACTATGGTTAGATTAAATCTACCGAAAATTTCTGACGTGATCTCATGTACTTTTCGTTTCAATTCCACTATGGTTAGATTAAATCCCTTCTTGTATGACCTGACCATTTTGATCTGTAACAGTTTCAATTCCACTATGGTTAGATTAAATCAATTTCTATGAGACATTAGAAAATTTGCATGAAAAAGTTTCAATTCCACTATGGTTAGATTAAATCTAACCTTAATAGGTTCTATGTGATGTACTGTATCGTAGTTTCAATTCCACTATGGTTAGATTAAATCCTGGTTAGTTACAATAGTAGCACCAGTAGCAAGCATGTTTCAATTCCACTATGGTTAGATTAAATCTACCGAAAATTTCTGACGTGATCTCATGTACTTTTCGTTTCAATTCCACTATGGTTAGATTAAATCCCTTCTTGTATGACCTGACCATTTTGATCTGTAACAGTTTCAATTCCACTATGGTTAGATTAAATCAATTTCTATGAGACATTAGAAAATTTGCATGAAAAAGTTTCAATTCCACTATGGTTAGATTAAATCTAACCTTAATAGGTTCTATGTGATGTACTGTATCGTAGTTTCAATTCCACTATGGTTAGATTAAATCTGCGCTGGGTGCAGCACAACCTAATTATGCAACTGGGTTTCAATTCCACTATGGTTAGATTAAATCGCCATTATGGCTATACATCAGATTATATTTTTTACAGTTTCAATTCCACTATGGTTAGATTAAATCTAAAAACGCCTGTGCAAGTACATCTTTAGCTTTAAGTGTTTCAATTCCACTATGGTTAGATTAAATCGCGGATATTGTGTGCGGACAGGCGAAAATAAAGTTTTGTTTCAATTCCACTATGGTTAGATTAAATCAAATGCAACAGTATTGTTGATTGATGACTTATACAAGTTTCAATTCCACTATGGTTAGATTAAATCTAATGGTTTTACTGTATCAACTTTTATGAGATCTGCGTTTCAATTCCACTATGGTTAGATTAAATCTTTGGCAGCAACAGCAATAGATTTTACTACAGCATGTTTCAATTCCACTATGGTTAGATTAAATCGTTTGGAAAAGAGAAATATTGATGATGGGTATAAATTGTTTCAATTCCACTATGGTTAGATTAAATCAGAATCTGAAGCAGTTACACTTATAAATTCAACAAAGTTTCAATTCCACTATGGTTAGATTAAATCAGCAAAATGCTCTGGTATTGGAAGAGATAAATTATGTTTCAATTCCACTATGGTTAGATTAAATCCATATATAAGAGCGGCGAAACCGCCGTCATGGCTATGTTTCAATTCCACTATGGTTAGATTAAATCTTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGCGTTTCAATTCCACTATGGTTAGATTAAATCCGGAACGCTTGAATTAAAAAGCGATGTACATGGGCTTGTTTCAATTCCACTATGGTTAGATTAAATCGAATATAAAGATAAAGCTGATTTTACTACATTTGACGGTTTCAATTCCACTATGGTTAGATTAAATCTTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGCGTTTCAATTCCACTATGGTTAGATTAAATCGCTGCATCTGTCGGAAGTATATAAGCTATAACCTTCTTGTTTCAATTCCACTATGGTTAGATTAAATCTAATAATTTAGGTGCAAAAAATGTTGTAGATTATTTGTTTCAATTCCACTATGGTTAGATTAAATCTACGAAATGCAAACTTAGAGAAACATTTGTTGAACTGTTTCAATTCCACTATGGTTAGATTAAATCTTACGTCAGAGAATTCAAAGCCTCTTGTAAAGTTTTTGTTTCAATTCCACTATGGTTAGATTAAATCTACCTTTAAAAACGAGGGGATGGTGTCTAAATTCGCTGTTTCAATTCCACTATGGTTAGATTAAATCTGTTTTGTAGATACAGCGACTTGGGGATTGGATTTGGTTTCAATTCCACTATGGTTAGATTAAATCAACTGCTATACTGTTTTTCAGCTTTTGAATTTTTTCGTTTCAATTCCACTATGGTTAGATTAAATCTCCTCGTTTAATTCTTCTGTGCTTTTCTCTACCATAGTTTCAATTCCACTATGGTTAGATTAAATCCGGAGCAGAACTGGCACAATATGGCCTTGCGACATTGTTTCAATTCCACTATGGTTAGATTAAATCTATTCGATGATTTAGGTATGCCGTCAATAATGGTAGGTTTCAATTCCACTATGGTTAGATTAAATCTGTTTTGTAGATACAGCGACTTGGGGATTGGATTTGGTTTCAATTCCACTATGGTTAGATTAAATCTTTTGGCGTAAACGAACGACTTATAAAATATAAATTGTTTCAATTCCACTATGGTTAGATTAAATCAATTTGTATCAATCATACTTAGAAGCAAGGAAATGCGTTTCAATTCCACTATGGTTAGATTAAATCGATATAGTAATGCAGTTTCAGTTCATGTTTTACATACGTTTCAATTCCACTATGGTTAGATTAAATCAATTCAATATAAATTGTACCGCCTACCTGCTTTGTTGTTTCAATTCCACTATGGTTAGATTAAATCCAAGTATACAAAAAACATCCATTTCTAAAAGAAAAAGGTTTCAATTCCACTATGGTTAGATTAAATCTGGTCTAATCTTGCAAGTGCGTTTCTCACATGAGCGTTTCAATTCCACTATGGTTAGATTAAATCTGAAGGAGGGGGAGGCAGCGTAAAAGAGACAGAACAGTTTCAATTCCACTATGGTTAGATTAAATCAATCAATTCCTGGCATGTTTCACAGACTGCATTCGTGTTTCAATTCCACTATGGTTAGATTAAATCTCTTTATACTCTCTCGTAGTACCGCCGAAATACCAAGTTTCAATTCCACTATGGTTAGATTAAATCTCATTTATAGCATTTTTAATTTGTTCATTTTTTGTGTTTCAATTCCACTATGGTTAGATTAAATCAGCAACTGGATCATCAAAGTTAAGAGGTGCTAAGTCGTTTCAATTCCACTATGGTTAGATTAAATCGCCCCAATTTCATCGGCTATAAAAGCCGAAGGTCTTAGTTTCAATTCCACTATGGTTAGATTAAATCATCTGTTTTTGCCTTTATTTCATCTGCTGTTACATCGTTTCAATTCCACTATGGTTAGATTAAATCTTTTCTTATACCTCCACTATCCTGGTATATTTTGCAGTTTCAATTCCACTATGGTTAGATTAAATCCCTAATAGTTATGTCGTGAAATCAGGCGATACGCTTGTTTCAATTCCACTATGGTTAGATTAAATCCCAGAACAAGTAATAAATGGCACTTGGGGTGAGATAGTTTCAATTCCACTATGGTTAGATTAAATCCTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCAGTTTCAATTCCACTATGGTTAGATTAAATCATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAATGTTTCAATTCCACTATGGTTAGATTAAATCGCTCTTGGCAATATGCTTAAACTGCTTACAGATTAGTTTCAATTCCACTATGGTTAGATTAAATCCTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCAGTTTCAATTCCACTATGGTTAGATTAAATCATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAATGTTTCAATTCCACTATGGTTAGATTAAATCTTTCTCCAGTTCTCTATCATGTTTACACACTCATAGTTTCAATTCCACTATGGTTAGATTAAATCAAACATTGGAGGAGTTAAAAAAAGAATATAAAAAATGTTTCAATTCCACTATGGTTAGATTAAATCGATTTCGCAAATAATGAATTCCTGCTTAAAGATGGCAGTTTCAATTCCACTATGGTTAGATTAAATCTGCTTAAAAATACAGATCATTGCAAAAGGATCACAAGTTTCAATTCCACTATGGTTAGATTAAATCTAAAAAGTACAAGTCAGATTACAGAGCCATATTGAATGTTTCAATTCCACTATGGTTAGATTAAATCTAAAAGCAGCTTTAAATAAAATAATGGCTCAAATTGGTTTCAATTCCACTATGGTTAGATTAAATCTTTAATAGACAGAATATTGATAGAGCAGGGTTCCGAGTTTCAATTCCACTATGGTTAGATTAAATCCTTATGAAGTGGCATTAGATGTATCGAGGTTTGGTACGTTTCAATTCCACTATGGTTAGATTAAATCCGAAAAAGAGATGATTAAAAACATTCCCGGGAGGCAGGTTTCAATTCCACTATGGTTAGATTAAATCTATGCTTTTTGTTGTTGCTCGTAAATTTGCAAATCCGTTTCAATTCCACTATGGTTAGATTAAATCTCAAGAAGATAATCAGTTCCAGAAGATATAACATAGTTTCAATTCCACTATGGTTAGATTAAATCAAAAATATTATGGTATTGATTTGTCAAGTGAATCTTAGTTTCAATTCCACTATGGTTAGATTAAATCTAAATCTTCTTTTGATGCTACAGTTGTTTCTTCTTCGTTTCAATTCCACTATGGTTAGATTAAATCGAGAGGCGTAAACAATGAAGTTTGCAAAAAAGTCGTGTTTCAATTCCACTATGGTTAGATTAAATCGTGATTGCTTTCCAGTGTGCTGCCGGTGCTCCTTTGTTTCAATTCCACTATGGTTAGATTAAATCTAATAACGCTCAAACAAATGGCAATATACAAATTGGTTTCAATTCCACTATGGTTAGATTAAATCTTACAACTACCACATAAAAGGATTTTTAAAAAACGCGTTTCAATTCCACTATGGTTAGATTAAATCAGGTGTTATGACTGTTTTGTCTATGTTAGTAGGTGCGTTTCAATTCCACTATGGTTAGATTAAATCTTAAGCGCCTTCTCTATTGGAGGAAGTTATGCCAAAGTTTCAATTCCACTATGGTTAGATTAAATCTTAGTAATGTAAAGGCAAAGTAATGCAAAGCGCAGCAAGTTTCAATTCCACTATGGTTAGATTAAATCTTAAAGGAGTTGGGTTTATGAGCAAATATATCGATGGTTTCAATTCCACTATGGTTAGATTAAATCTTACAAAACAAGAATAGAAGGGAGACCTTTATACACGTTTCAATTCCACTATGGTTAGATTAAATCTATCATTTTCTGTATTAAGCTGTTGTCATCAAGCGGGTTTCAATTCCACTATGGTTAGATTAAATCCCATCAGATATAGCAGCAATTGTGCAGCGATATAGAGTTTCAATTCCACTATGGTTAGATTAAATCTGCATCTTCGCATGTGGAATACCAACTGTTTTCTTCGTTTCAATTCCACTATGGTTAGATTAAATCTACTAAAGCGAAAAGCGAAAGCTTGAAGCGGTAAAGGTTTCAATTCCACTATGGTTAGATTAAATCTACAAGTTATAGCTAAGGCTGATGGGCCTTGGACAAGTTTCAATTCCACTATGGTTAGATTAAATCTGCTGGGTTATCAACGAGACTATATTCGCTTAACTTGTTTCAATTCCACTATGGTTAGATTAAATCCAGGAAGGTAATTATTTATCACCATTGCCACCTTAGTTTCAATTCCACTATGGTTAGATTAAATCTAATGCACCAGCCAATAGCAGTAGGCAAGACCATTCACGTTTCAATTCCACTATGGTTAGATTAAATCGAACTTGGATTTACAGAAAAAGTTAACAAATCATCGTTTCAATTCCACTATGGTTAGATTAAATCGCGATACGTATAGTAGTATCGTATGCAGAAAATGAGTTTCAATTCCACTATGGTTAGATTAAATCCACTGCAAATTTCTGCGAGTTTTTTCCAAGCTACAACGTTTCAATTCCACTATGGTTAGATTAAATCGAATTAAAAAAGAAAATAGAAGAAGAATGTAAAAAGTTTCAATTCCACTATGGTTAGATTAAATCAGATGACTGAATAAATACTCTTTCGCCGATTTCTTCGTTTCAATTCCACTATGGTTAGATTAAATCCCTGATTTGTAGGCAACAGAATTACGAGTGAAGGTTGTTTCAATTCCACTATGGTTAGATTAAATCAGCAGTAATAGGAACAGTTATATATATGATTGTTAGGGTTTCAATTCCACTATGGTTAGATTAAATCACCCGCATGACTGTAAGGCTGTATTGGTTACATCGAGTTTCAATTCCACTATGGTTAGATTAAATCGAATATTCAAAAGCGTATTTGAGAAACAAAGCAGAATCGTTTCAATTCCACTATGGTTAGATTAAATCATAGCTATCTTTTAATACATCTATCCTTTCGTCTTCGTTTCAATTCCACTATGGTTAGATTAAATCGCCTTTTTGTATTTGTGATATTTTGCCTTTGCTCCCGTTTCAATTCCACTATGGTTAGATTAAATCGAATTTTGAAATCGCCACGTCCTGAAGATCATATAAGTTTCAATTCCACTATGGTTAGATTAAATCCATTTCCTTTCCCAGATATTAGAATTTGTCGAGACTCGTTTCAATTCCACTATGGTTAGATTAAATCTTGTTTGTCCATTGTCAGGTCATTTTTCTTAGCGATGTTTCAATTCCACTATGGTTAGATTAAATCGTGCTTTCTTTTGCTGCATTATTTACTTTAGCATTTTGTTTCAATTCCACTATGGTTAGATTAAATCTTCTTGTTTTTGACGATATTTGTAAGTCGAAAATTTGTTTCAATTCCACTATGGTTAGATTAAATCAAAGCCTAAAAATATAACTAAAATTCCGATTGCGTAGTTTCAATTCCACTATGGTTAGATTAAATCGGTGAAAGAGAAAAAGGTGGTTATTCAGAAGAAGAAGTTTCAATTCCACTATGGTTAGATTAAATCTGCTGTAAAAACATTACAGCAACAATTAAATCAATTGTTTCAATTCCACTATGGTTAGATTAAATCCAATGGGGCAAAGATATGATAAATGGCTTTATAAAGTTTCAATTCCACTATGGTTAGATTAAATCGATAAATATTTGTTAGGTTATCATGCTATCATTTGCTAGTTTCAATTCCACTATGGTTAGATTAAATCCATAATCAACTATGTCACTAAATTTATATATTTTGTCGTTTCAATTCCACTATGGTTAGATTAAATCCTACATAGCTTGTCGTCATATTATCCCATATCACAAGTTTCAATTCCACTATGGTTAGATTAAATCAGGGCCAGATTCATATTTAGCAACACAAGAAATTATGTTTCAATTCCACTATGGTTAGATTAAATCTTGAAGAGGAGGAAATCGAAGATGAAGAGGATTAAGTTTCAATTCCACTATGGTTAGATTAAATCAATAACTGAAACAAAAGAAGCCTATTATGATAATAAGTTTCAATTCCACTATGGTTAGATTAAATCAGAGACATAAAGAGATTTAAAGTAACGCCAGATATGGTTTCAATTCCACTATGGTTAGATTAAATCTTAAACGACAAAGTTGTTGTTAGAAAATGTTTGTTGTTTCAATTCCACTATGGTTAGATTAAATCTAACGCCACTTTCAATGTCAATTTTTTCATCGCCTTTGTTTCAATTCCACTATGGTTAGATTAAATCTGCTGTCAAAAGTCCTTTTGCTACCGCCTGTTTTACTGTTTCAATTCCACTATGGTTAGATTAAATCAAAAGTTTGTATGTATTGGCTTTTTTGTTTGCTCCAGTTTCAATTCCACTATGGTTAGATTAAATCAGACTATAAATGGATACCAGAAGAAGGCGAAGAAGAGTTTCAATTCCACTATGGTTAGATTAAATCCTCTCTGGCAAGTTCATCGAACCAATCATCGTCTATGTTTCAATTCCACTATGGTTAGATTAAATCTGTTTGTCCATCGCATTGAAAACTTTGTGTAATACTGTGTTTCAATTCCACTATGGTTAGATTAAATCTGTATTCCTACAATCTTTGTAAATATCTTTGTAAAGTTTCAATTCCACTATGGTTAGATTAAATCTACCGTTAAATATACTTCTTATTCCAGAAATTACGGTTTCAATTCCACTATGGTTAGATTAAATCAAATTTGCTTCTCAGAAATCAGGGTATTGAATACGCGTTTCAATTCCACTATGGTTAGATTAAATCGATATGAACTTGACAGAATATTTCAGCGTAAATAAATGTTTCAATTCCACTATGGTTAGATTAAATCGAACTGTAAGGTGAGAGAAAACAAGAGGACAAGCTAGTTTCAATTCCACTATGGTTAGATTAAATCCCTTCAATACTTTACAGAGGGCAGCGTACCAGAAGCAGTTTCAATTCCACTATGGTTAGATTAAATCACATTGGCTCACCTGCTCTTATTGTTCCTAATATGTTTCAATTCCACTATGGTTAGATTAAATCCAAAAAGCAGATGTTGTTATTTTTACTGACAAGGACGTTTCAATTCCACTATGGTTAGATTAAATCCTCCTACAAGTATAAAACCTTCTTCTTCGCCTTCTTCGTTTCAATTCCACTATGGTTAGATTAAATCTTTCAGAAAGTCTAAAAGAAATAGTCAAAAAGTACAGTTTCAATTCCACTATGGTTAGATTAAATCTACTGTTATTAATATTCCTAGAGCATATATTTTAAAGTTTCAATTCCACTATGGTTAGATTAAATCTAGGAGAGTGATTTGTTTTGAGTGTTACCTTGTATACGTTTCAATTCCACTATGGTTAGATTAAATCGGATATTACCTTTTACAGTTTTTACTGTCACTGAGTTTGTTTCAATTCCACTATGGTTAGATTAAATCAGTTTATGCATCTGTTATTGATTCTACTTATGCTAAGTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|5|4|2460483-2469714|CRISPRCasFinder
GTTTCAATTCCACTATGGTTAGATTAAATC	GTAAATATTATAAATGGTGTAATTTCTTTTTTTTCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATATTGCATTAGCGAAAGCAGAATTAAACGATGAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCTATTTGTTGTTCGACAGCCATTACAACATTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTACTTTTGCCAAACTAACCACCTGCCTTTTCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTCCTGAAAATAAGTAATTACTACCGTTAACATAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTGGTTAGTTACAATAGTAGCACCAGTAGCAAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCGCTGGGTGCAGCACAACCTAATTATGCAACTGG
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCATTATGGCTATACATCAGATTATATTTTTTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAACGCCTGTGCAAGTACATCTTTAGCTTTAAGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGGATATTGTGTGCGGACAGGCGAAAATAAAGTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATGCAACAGTATTGTTGATTGATGACTTATACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGGTTTTACTGTATCAACTTTTATGAGATCTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTGGCAGCAACAGCAATAGATTTTACTACAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTTTGGAAAAGAGAAATATTGATGATGGGTATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAATCTGAAGCAGTTACACTTATAAATTCAACAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAAAATGCTCTGGTATTGGAAGAGATAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CATATATAAGAGCGGCGAAACCGCCGTCATGGCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAACGCTTGAATTAAAAAGCGATGTACATGGGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATAAAGATAAAGCTGATTTTACTACATTTGACG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTGCATCTGTCGGAAGTATATAAGCTATAACCTTCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAATTTAGGTGCAAAAAATGTTGTAGATTATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACGAAATGCAAACTTAGAGAAACATTTGTTGAACT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACGTCAGAGAATTCAAAGCCTCTTGTAAAGTTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCTTTAAAAACGAGGGGATGGTGTCTAAATTCGCT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	AACTGCTATACTGTTTTTCAGCTTTTGAATTTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCCTCGTTTAATTCTTCTGTGCTTTTCTCTACCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAGCAGAACTGGCACAATATGGCCTTGCGACATT
GTTTCAATTCCACTATGGTTAGATTAAATC	TATTCGATGATTTAGGTATGCCGTCAATAATGGTAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTGGCGTAAACGAACGACTTATAAAATATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTGTATCAATCATACTTAGAAGCAAGGAAATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATAGTAATGCAGTTTCAGTTCATGTTTTACATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTCAATATAAATTGTACCGCCTACCTGCTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAGTATACAAAAAACATCCATTTCTAAAAGAAAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGGTCTAATCTTGCAAGTGCGTTTCTCACATGAGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TGAAGGAGGGGGAGGCAGCGTAAAAGAGACAGAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATCAATTCCTGGCATGTTTCACAGACTGCATTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTTTATACTCTCTCGTAGTACCGCCGAAATACCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TCATTTATAGCATTTTTAATTTGTTCATTTTTTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAACTGGATCATCAAAGTTAAGAGGTGCTAAGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCCCAATTTCATCGGCTATAAAAGCCGAAGGTCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATCTGTTTTTGCCTTTATTTCATCTGCTGTTACATC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTCTTATACCTCCACTATCCTGGTATATTTTGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTAATAGTTATGTCGTGAAATCAGGCGATACGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CCAGAACAAGTAATAAATGGCACTTGGGGTGAGATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTCTTGGCAATATGCTTAAACTGCTTACAGATTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCTCCAGTTCTCTATCATGTTTACACACTCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAACATTGGAGGAGTTAAAAAAAGAATATAAAAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GATTTCGCAAATAATGAATTCCTGCTTAAAGATGGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTTAAAAATACAGATCATTGCAAAAGGATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAAGTACAAGTCAGATTACAGAGCCATATTGAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAGCAGCTTTAAATAAAATAATGGCTCAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTAATAGACAGAATATTGATAGAGCAGGGTTCCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTTATGAAGTGGCATTAGATGTATCGAGGTTTGGTAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGAAAAAGAGATGATTAAAAACATTCCCGGGAGGCAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TATGCTTTTTGTTGTTGCTCGTAAATTTGCAAATCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCAAGAAGATAATCAGTTCCAGAAGATATAACATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAATATTATGGTATTGATTTGTCAAGTGAATCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAATCTTCTTTTGATGCTACAGTTGTTTCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAGAGGCGTAAACAATGAAGTTTGCAAAAAAGTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGATTGCTTTCCAGTGTGCTGCCGGTGCTCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAACGCTCAAACAAATGGCAATATACAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAACTACCACATAAAAGGATTTTTAAAAAACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGTGTTATGACTGTTTTGTCTATGTTAGTAGGTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAGCGCCTTCTCTATTGGAGGAAGTTATGCCAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAGTAATGTAAAGGCAAAGTAATGCAAAGCGCAGCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAAGGAGTTGGGTTTATGAGCAAATATATCGATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAAAACAAGAATAGAAGGGAGACCTTTATACAC
GTTTCAATTCCACTATGGTTAGATTAAATC	TATCATTTTCTGTATTAAGCTGTTGTCATCAAGCGG
GTTTCAATTCCACTATGGTTAGATTAAATC	CCATCAGATATAGCAGCAATTGTGCAGCGATATAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCATCTTCGCATGTGGAATACCAACTGTTTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTAAAGCGAAAAGCGAAAGCTTGAAGCGGTAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TACAAGTTATAGCTAAGGCTGATGGGCCTTGGACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGGGTTATCAACGAGACTATATTCGCTTAACTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAGGAAGGTAATTATTTATCACCATTGCCACCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGCACCAGCCAATAGCAGTAGGCAAGACCATTCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTTGGATTTACAGAAAAAGTTAACAAATCATC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGATACGTATAGTAGTATCGTATGCAGAAAATGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CACTGCAAATTTCTGCGAGTTTTTTCCAAGCTACAAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTAAAAAAGAAAATAGAAGAAGAATGTAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGATGACTGAATAAATACTCTTTCGCCGATTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTGATTTGTAGGCAACAGAATTACGAGTGAAGGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAGTAATAGGAACAGTTATATATATGATTGTTAGG
GTTTCAATTCCACTATGGTTAGATTAAATC	ACCCGCATGACTGTAAGGCTGTATTGGTTACATCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATTCAAAAGCGTATTTGAGAAACAAAGCAGAATC
GTTTCAATTCCACTATGGTTAGATTAAATC	ATAGCTATCTTTTAATACATCTATCCTTTCGTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCTTTTTGTATTTGTGATATTTTGCCTTTGCTCCC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTTTGAAATCGCCACGTCCTGAAGATCATATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATTTCCTTTCCCAGATATTAGAATTTGTCGAGACTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGTTTGTCCATTGTCAGGTCATTTTTCTTAGCGAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGCTTTCTTTTGCTGCATTATTTACTTTAGCATTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTCTTGTTTTTGACGATATTTGTAAGTCGAAAATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAGCCTAAAAATATAACTAAAATTCCGATTGCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGTGAAAGAGAAAAAGGTGGTTATTCAGAAGAAGAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTAAAAACATTACAGCAACAATTAAATCAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAATGGGGCAAAGATATGATAAATGGCTTTATAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	GATAAATATTTGTTAGGTTATCATGCTATCATTTGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATAATCAACTATGTCACTAAATTTATATATTTTGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTACATAGCTTGTCGTCATATTATCCCATATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGGCCAGATTCATATTTAGCAACACAAGAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGAAGAGGAGGAAATCGAAGATGAAGAGGATTAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATAACTGAAACAAAAGAAGCCTATTATGATAATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAGACATAAAGAGATTTAAAGTAACGCCAGATATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAACGACAAAGTTGTTGTTAGAAAATGTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACGCCACTTTCAATGTCAATTTTTTCATCGCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTCAAAAGTCCTTTTGCTACCGCCTGTTTTACT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAGTTTGTATGTATTGGCTTTTTTGTTTGCTCCA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGACTATAAATGGATACCAGAAGAAGGCGAAGAAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCTCTGGCAAGTTCATCGAACCAATCATCGTCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTGTCCATCGCATTGAAAACTTTGTGTAATACTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTATTCCTACAATCTTTGTAAATATCTTTGTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGTTAAATATACTTCTTATTCCAGAAATTACG
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATTTGCTTCTCAGAAATCAGGGTATTGAATACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATGAACTTGACAGAATATTTCAGCGTAAATAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTGTAAGGTGAGAGAAAACAAGAGGACAAGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCAATACTTTACAGAGGGCAGCGTACCAGAAGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ACATTGGCTCACCTGCTCTTATTGTTCCTAATAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAAGCAGATGTTGTTATTTTTACTGACAAGGAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCCTACAAGTATAAAACCTTCTTCTTCGCCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCAGAAAGTCTAAAAGAAATAGTCAAAAAGTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTGTTATTAATATTCCTAGAGCATATATTTTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAGGAGAGTGATTTGTTTTGAGTGTTACCTTGTATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GGATATTACCTTTTACAGTTTTTACTGTCACTGAGTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGTTTATGCATCTGTTATTGATTCTACTTATGCTAA
GTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|5|3|2460483-2469714|CRT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTAAATATTATAAATGGTGTAATTTCTTTTTTTTCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATATTGCATTAGCGAAAGCAGAATTAAACGATGAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCTATTTGTTGTTCGACAGCCATTACAACATTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTACTTTTGCCAAACTAACCACCTGCCTTTTCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTCCTGAAAATAAGTAATTACTACCGTTAACATAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTGGTTAGTTACAATAGTAGCACCAGTAGCAAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCGCTGGGTGCAGCACAACCTAATTATGCAACTGG
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCATTATGGCTATACATCAGATTATATTTTTTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAACGCCTGTGCAAGTACATCTTTAGCTTTAAGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGGATATTGTGTGCGGACAGGCGAAAATAAAGTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATGCAACAGTATTGTTGATTGATGACTTATACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGGTTTTACTGTATCAACTTTTATGAGATCTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTGGCAGCAACAGCAATAGATTTTACTACAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTTTGGAAAAGAGAAATATTGATGATGGGTATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAATCTGAAGCAGTTACACTTATAAATTCAACAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAAAATGCTCTGGTATTGGAAGAGATAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CATATATAAGAGCGGCGAAACCGCCGTCATGGCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAACGCTTGAATTAAAAAGCGATGTACATGGGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATAAAGATAAAGCTGATTTTACTACATTTGACG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTGCATCTGTCGGAAGTATATAAGCTATAACCTTCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAATTTAGGTGCAAAAAATGTTGTAGATTATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACGAAATGCAAACTTAGAGAAACATTTGTTGAACT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACGTCAGAGAATTCAAAGCCTCTTGTAAAGTTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCTTTAAAAACGAGGGGATGGTGTCTAAATTCGCT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	AACTGCTATACTGTTTTTCAGCTTTTGAATTTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCCTCGTTTAATTCTTCTGTGCTTTTCTCTACCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAGCAGAACTGGCACAATATGGCCTTGCGACATT
GTTTCAATTCCACTATGGTTAGATTAAATC	TATTCGATGATTTAGGTATGCCGTCAATAATGGTAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTGGCGTAAACGAACGACTTATAAAATATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTGTATCAATCATACTTAGAAGCAAGGAAATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATAGTAATGCAGTTTCAGTTCATGTTTTACATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTCAATATAAATTGTACCGCCTACCTGCTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAGTATACAAAAAACATCCATTTCTAAAAGAAAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGGTCTAATCTTGCAAGTGCGTTTCTCACATGAGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TGAAGGAGGGGGAGGCAGCGTAAAAGAGACAGAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATCAATTCCTGGCATGTTTCACAGACTGCATTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTTTATACTCTCTCGTAGTACCGCCGAAATACCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TCATTTATAGCATTTTTAATTTGTTCATTTTTTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAACTGGATCATCAAAGTTAAGAGGTGCTAAGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCCCAATTTCATCGGCTATAAAAGCCGAAGGTCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATCTGTTTTTGCCTTTATTTCATCTGCTGTTACATC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTCTTATACCTCCACTATCCTGGTATATTTTGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTAATAGTTATGTCGTGAAATCAGGCGATACGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CCAGAACAAGTAATAAATGGCACTTGGGGTGAGATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTCTTGGCAATATGCTTAAACTGCTTACAGATTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCTCCAGTTCTCTATCATGTTTACACACTCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAACATTGGAGGAGTTAAAAAAAGAATATAAAAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GATTTCGCAAATAATGAATTCCTGCTTAAAGATGGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTTAAAAATACAGATCATTGCAAAAGGATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAAGTACAAGTCAGATTACAGAGCCATATTGAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAGCAGCTTTAAATAAAATAATGGCTCAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTAATAGACAGAATATTGATAGAGCAGGGTTCCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTTATGAAGTGGCATTAGATGTATCGAGGTTTGGTAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGAAAAAGAGATGATTAAAAACATTCCCGGGAGGCAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TATGCTTTTTGTTGTTGCTCGTAAATTTGCAAATCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCAAGAAGATAATCAGTTCCAGAAGATATAACATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAATATTATGGTATTGATTTGTCAAGTGAATCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAATCTTCTTTTGATGCTACAGTTGTTTCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAGAGGCGTAAACAATGAAGTTTGCAAAAAAGTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGATTGCTTTCCAGTGTGCTGCCGGTGCTCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAACGCTCAAACAAATGGCAATATACAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAACTACCACATAAAAGGATTTTTAAAAAACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGTGTTATGACTGTTTTGTCTATGTTAGTAGGTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAGCGCCTTCTCTATTGGAGGAAGTTATGCCAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAGTAATGTAAAGGCAAAGTAATGCAAAGCGCAGCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAAGGAGTTGGGTTTATGAGCAAATATATCGATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAAAACAAGAATAGAAGGGAGACCTTTATACAC
GTTTCAATTCCACTATGGTTAGATTAAATC	TATCATTTTCTGTATTAAGCTGTTGTCATCAAGCGG
GTTTCAATTCCACTATGGTTAGATTAAATC	CCATCAGATATAGCAGCAATTGTGCAGCGATATAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCATCTTCGCATGTGGAATACCAACTGTTTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTAAAGCGAAAAGCGAAAGCTTGAAGCGGTAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TACAAGTTATAGCTAAGGCTGATGGGCCTTGGACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGGGTTATCAACGAGACTATATTCGCTTAACTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAGGAAGGTAATTATTTATCACCATTGCCACCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGCACCAGCCAATAGCAGTAGGCAAGACCATTCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTTGGATTTACAGAAAAAGTTAACAAATCATC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGATACGTATAGTAGTATCGTATGCAGAAAATGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CACTGCAAATTTCTGCGAGTTTTTTCCAAGCTACAAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTAAAAAAGAAAATAGAAGAAGAATGTAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGATGACTGAATAAATACTCTTTCGCCGATTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTGATTTGTAGGCAACAGAATTACGAGTGAAGGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAGTAATAGGAACAGTTATATATATGATTGTTAGG
GTTTCAATTCCACTATGGTTAGATTAAATC	ACCCGCATGACTGTAAGGCTGTATTGGTTACATCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATTCAAAAGCGTATTTGAGAAACAAAGCAGAATC
GTTTCAATTCCACTATGGTTAGATTAAATC	ATAGCTATCTTTTAATACATCTATCCTTTCGTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCTTTTTGTATTTGTGATATTTTGCCTTTGCTCCC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTTTGAAATCGCCACGTCCTGAAGATCATATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATTTCCTTTCCCAGATATTAGAATTTGTCGAGACTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGTTTGTCCATTGTCAGGTCATTTTTCTTAGCGAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGCTTTCTTTTGCTGCATTATTTACTTTAGCATTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTCTTGTTTTTGACGATATTTGTAAGTCGAAAATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAGCCTAAAAATATAACTAAAATTCCGATTGCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGTGAAAGAGAAAAAGGTGGTTATTCAGAAGAAGAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTAAAAACATTACAGCAACAATTAAATCAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAATGGGGCAAAGATATGATAAATGGCTTTATAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	GATAAATATTTGTTAGGTTATCATGCTATCATTTGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATAATCAACTATGTCACTAAATTTATATATTTTGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTACATAGCTTGTCGTCATATTATCCCATATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGGCCAGATTCATATTTAGCAACACAAGAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGAAGAGGAGGAAATCGAAGATGAAGAGGATTAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATAACTGAAACAAAAGAAGCCTATTATGATAATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAGACATAAAGAGATTTAAAGTAACGCCAGATATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAACGACAAAGTTGTTGTTAGAAAATGTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACGCCACTTTCAATGTCAATTTTTTCATCGCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTCAAAAGTCCTTTTGCTACCGCCTGTTTTACT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAGTTTGTATGTATTGGCTTTTTTGTTTGCTCCA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGACTATAAATGGATACCAGAAGAAGGCGAAGAAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCTCTGGCAAGTTCATCGAACCAATCATCGTCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTGTCCATCGCATTGAAAACTTTGTGTAATACTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTATTCCTACAATCTTTGTAAATATCTTTGTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGTTAAATATACTTCTTATTCCAGAAATTACG
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATTTGCTTCTCAGAAATCAGGGTATTGAATACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATGAACTTGACAGAATATTTCAGCGTAAATAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTGTAAGGTGAGAGAAAACAAGAGGACAAGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCAATACTTTACAGAGGGCAGCGTACCAGAAGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ACATTGGCTCACCTGCTCTTATTGTTCCTAATAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAAGCAGATGTTGTTATTTTTACTGACAAGGAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCCTACAAGTATAAAACCTTCTTCTTCGCCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCAGAAAGTCTAAAAGAAATAGTCAAAAAGTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTGTTATTAATATTCCTAGAGCATATATTTTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAGGAGAGTGATTTGTTTTGAGTGTTACCTTGTATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GGATATTACCTTTTACAGTTTTTACTGTCACTGAGTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGTTTATGCATCTGTTATTGATTCTACTTATGCTAA
GTTTCAATTCCACTATGGTTAGATTAAATC

>NC_015555|5|4|2460815-2469714|PILER-CR
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTGGTTAGTTACAATAGTAGCACCAGTAGCAAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCGCTGGGTGCAGCACAACCTAATTATGCAACTGG
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCATTATGGCTATACATCAGATTATATTTTTTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAACGCCTGTGCAAGTACATCTTTAGCTTTAAGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGGATATTGTGTGCGGACAGGCGAAAATAAAGTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATGCAACAGTATTGTTGATTGATGACTTATACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGGTTTTACTGTATCAACTTTTATGAGATCTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTGGCAGCAACAGCAATAGATTTTACTACAGCAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTTTGGAAAAGAGAAATATTGATGATGGGTATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAATCTGAAGCAGTTACACTTATAAATTCAACAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAAAATGCTCTGGTATTGGAAGAGATAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CATATATAAGAGCGGCGAAACCGCCGTCATGGCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAACGCTTGAATTAAAAAGCGATGTACATGGGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATAAAGATAAAGCTGATTTTACTACATTTGACG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTGCATCTGTCGGAAGTATATAAGCTATAACCTTCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAATTTAGGTGCAAAAAATGTTGTAGATTATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACGAAATGCAAACTTAGAGAAACATTTGTTGAACT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACGTCAGAGAATTCAAAGCCTCTTGTAAAGTTTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCTTTAAAAACGAGGGGATGGTGTCTAAATTCGCT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	AACTGCTATACTGTTTTTCAGCTTTTGAATTTTTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCCTCGTTTAATTCTTCTGTGCTTTTCTCTACCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CGGAGCAGAACTGGCACAATATGGCCTTGCGACATT
GTTTCAATTCCACTATGGTTAGATTAAATC	TATTCGATGATTTAGGTATGCCGTCAATAATGGTAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTGGCGTAAACGAACGACTTATAAAATATAAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTTGTATCAATCATACTTAGAAGCAAGGAAATGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATAGTAATGCAGTTTCAGTTCATGTTTTACATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	AATTCAATATAAATTGTACCGCCTACCTGCTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAGTATACAAAAAACATCCATTTCTAAAAGAAAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TGGTCTAATCTTGCAAGTGCGTTTCTCACATGAGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TGAAGGAGGGGGAGGCAGCGTAAAAGAGACAGAACA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATCAATTCCTGGCATGTTTCACAGACTGCATTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TCTTTATACTCTCTCGTAGTACCGCCGAAATACCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TCATTTATAGCATTTTTAATTTGTTCATTTTTTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAACTGGATCATCAAAGTTAAGAGGTGCTAAGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCCCAATTTCATCGGCTATAAAAGCCGAAGGTCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATCTGTTTTTGCCTTTATTTCATCTGCTGTTACATC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTTCTTATACCTCCACTATCCTGGTATATTTTGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTAATAGTTATGTCGTGAAATCAGGCGATACGCTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CCAGAACAAGTAATAAATGGCACTTGGGGTGAGATA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GCTCTTGGCAATATGCTTAAACTGCTTACAGATTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCTCCAGTTCTCTATCATGTTTACACACTCATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAACATTGGAGGAGTTAAAAAAAGAATATAAAAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GATTTCGCAAATAATGAATTCCTGCTTAAAGATGGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTTAAAAATACAGATCATTGCAAAAGGATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAAGTACAAGTCAGATTACAGAGCCATATTGAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAAAGCAGCTTTAAATAAAATAATGGCTCAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTAATAGACAGAATATTGATAGAGCAGGGTTCCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTTATGAAGTGGCATTAGATGTATCGAGGTTTGGTAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CGAAAAAGAGATGATTAAAAACATTCCCGGGAGGCAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TATGCTTTTTGTTGTTGCTCGTAAATTTGCAAATCC
GTTTCAATTCCACTATGGTTAGATTAAATC	TCAAGAAGATAATCAGTTCCAGAAGATATAACATA
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAATATTATGGTATTGATTTGTCAAGTGAATCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAAATCTTCTTTTGATGCTACAGTTGTTTCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAGAGGCGTAAACAATGAAGTTTGCAAAAAAGTCGT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGATTGCTTTCCAGTGTGCTGCCGGTGCTCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATAACGCTCAAACAAATGGCAATATACAAATTG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAACTACCACATAAAAGGATTTTTAAAAAACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGTGTTATGACTGTTTTGTCTATGTTAGTAGGTGC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAGCGCCTTCTCTATTGGAGGAAGTTATGCCAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAGTAATGTAAAGGCAAAGTAATGCAAAGCGCAGCAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAAGGAGTTGGGTTTATGAGCAAATATATCGATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTACAAAACAAGAATAGAAGGGAGACCTTTATACAC
GTTTCAATTCCACTATGGTTAGATTAAATC	TATCATTTTCTGTATTAAGCTGTTGTCATCAAGCGG
GTTTCAATTCCACTATGGTTAGATTAAATC	CCATCAGATATAGCAGCAATTGTGCAGCGATATAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCATCTTCGCATGTGGAATACCAACTGTTTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTAAAGCGAAAAGCGAAAGCTTGAAGCGGTAAAG
GTTTCAATTCCACTATGGTTAGATTAAATC	TACAAGTTATAGCTAAGGCTGATGGGCCTTGGACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGGGTTATCAACGAGACTATATTCGCTTAACTT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAGGAAGGTAATTATTTATCACCATTGCCACCTTA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAATGCACCAGCCAATAGCAGTAGGCAAGACCATTCAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTTGGATTTACAGAAAAAGTTAACAAATCATC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCGATACGTATAGTAGTATCGTATGCAGAAAATGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CACTGCAAATTTCTGCGAGTTTTTTCCAAGCTACAAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTAAAAAAGAAAATAGAAGAAGAATGTAAAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGATGACTGAATAAATACTCTTTCGCCGATTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTGATTTGTAGGCAACAGAATTACGAGTGAAGGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGCAGTAATAGGAACAGTTATATATATGATTGTTAGG
GTTTCAATTCCACTATGGTTAGATTAAATC	ACCCGCATGACTGTAAGGCTGTATTGGTTACATCGA
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATATTCAAAAGCGTATTTGAGAAACAAAGCAGAATC
GTTTCAATTCCACTATGGTTAGATTAAATC	ATAGCTATCTTTTAATACATCTATCCTTTCGTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	GCCTTTTTGTATTTGTGATATTTTGCCTTTGCTCCC
GTTTCAATTCCACTATGGTTAGATTAAATC	GAATTTTGAAATCGCCACGTCCTGAAGATCATATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATTTCCTTTCCCAGATATTAGAATTTGTCGAGACTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGTTTGTCCATTGTCAGGTCATTTTTCTTAGCGAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GTGCTTTCTTTTGCTGCATTATTTACTTTAGCATTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTCTTGTTTTTGACGATATTTGTAAGTCGAAAATTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAGCCTAAAAATATAACTAAAATTCCGATTGCGTA
GTTTCAATTCCACTATGGTTAGATTAAATC	GGTGAAAGAGAAAAAGGTGGTTATTCAGAAGAAGAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTAAAAACATTACAGCAACAATTAAATCAATT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAATGGGGCAAAGATATGATAAATGGCTTTATAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	GATAAATATTTGTTAGGTTATCATGCTATCATTTGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CATAATCAACTATGTCACTAAATTTATATATTTTGTC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTACATAGCTTGTCGTCATATTATCCCATATCACAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGGGCCAGATTCATATTTAGCAACACAAGAAATTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TTGAAGAGGAGGAAATCGAAGATGAAGAGGATTAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AATAACTGAAACAAAAGAAGCCTATTATGATAATAA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGAGACATAAAGAGATTTAAAGTAACGCCAGATATG
GTTTCAATTCCACTATGGTTAGATTAAATC	TTAAACGACAAAGTTGTTGTTAGAAAATGTTTGTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TAACGCCACTTTCAATGTCAATTTTTTCATCGCCTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGCTGTCAAAAGTCCTTTTGCTACCGCCTGTTTTACT
GTTTCAATTCCACTATGGTTAGATTAAATC	AAAAGTTTGTATGTATTGGCTTTTTTGTTTGCTCCA
GTTTCAATTCCACTATGGTTAGATTAAATC	AGACTATAAATGGATACCAGAAGAAGGCGAAGAAGA
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCTCTGGCAAGTTCATCGAACCAATCATCGTCTAT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTTTGTCCATCGCATTGAAAACTTTGTGTAATACTGT
GTTTCAATTCCACTATGGTTAGATTAAATC	TGTATTCCTACAATCTTTGTAAATATCTTTGTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACCGTTAAATATACTTCTTATTCCAGAAATTACG
GTTTCAATTCCACTATGGTTAGATTAAATC	AAATTTGCTTCTCAGAAATCAGGGTATTGAATACGC
GTTTCAATTCCACTATGGTTAGATTAAATC	GATATGAACTTGACAGAATATTTCAGCGTAAATAAAT
GTTTCAATTCCACTATGGTTAGATTAAATC	GAACTGTAAGGTGAGAGAAAACAAGAGGACAAGCTA
GTTTCAATTCCACTATGGTTAGATTAAATC	CCTTCAATACTTTACAGAGGGCAGCGTACCAGAAGCA
GTTTCAATTCCACTATGGTTAGATTAAATC	ACATTGGCTCACCTGCTCTTATTGTTCCTAATAT
GTTTCAATTCCACTATGGTTAGATTAAATC	CAAAAAGCAGATGTTGTTATTTTTACTGACAAGGAC
GTTTCAATTCCACTATGGTTAGATTAAATC	CTCCTACAAGTATAAAACCTTCTTCTTCGCCTTCTTC
GTTTCAATTCCACTATGGTTAGATTAAATC	TTTCAGAAAGTCTAAAAGAAATAGTCAAAAAGTACA
GTTTCAATTCCACTATGGTTAGATTAAATC	TACTGTTATTAATATTCCTAGAGCATATATTTTAAA
GTTTCAATTCCACTATGGTTAGATTAAATC	TAGGAGAGTGATTTGTTTTGAGTGTTACCTTGTATAC
GTTTCAATTCCACTATGGTTAGATTAAATC	GGATATTACCTTTTACAGTTTTTACTGTCACTGAGTTT
GTTTCAATTCCACTATGGTTAGATTAAATC	AGTTTATGCATCTGTTATTGATTCTACTTATGCTAA
GTTTCAATTCCACTATGGTTAGATTAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015555.1\|WP_013789065.1\|2452296_2453277_+\|DNA-replication-protein-DnaC	unknown	unknown	gnl\|CDD\|235871
NC_015555.1\|WP_013789064.1\|2451332_2452304_+\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|377797
NC_015555.1\|WP_013789069.1\|2457728_2457983_-\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013789078.1\|2478081_2479134_+\|DUF1646-domain-containing-protein	unknown	unknown	gnl\|CDD\|285138
NC_015555.1\|WP_013789075.1\|2474685_2475333_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	COG1688_cas5_CAS-I	gnl\|CDD\|273860
NC_015555.1\|WP_013789074.1\|2472497_2474714_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015555.1\|WP_013789066.1\|2453273_2454716_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341067
NC_015555.1\|WP_013789076.1\|2475339_2476356_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_015555.1\|WP_013789063.1\|2449945_2451151_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_015555.1\|WP_013789067.1\|2454855_2455467_+\|sporulation-membrane-protein-YtaF	unknown	unknown	gnl\|CDD\|274321
NC_015555.1\|WP_013787204.1\|2458949_2460323_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_015555.1\|WP_013789079.1\|2479197_2479869_-\|hypothetical-protein	unknown	unknown	unknown
NC_015555.1\|WP_013789068.1\|2457496_2457676_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_015555.1\|WP_013789070.1\|2469952_2470708_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|187889
NC_015555.1\|WP_013789072.1\|2470983_2471976_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_015555.1\|WP_013789077.1\|2476374_2477754_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_015555.1\|WP_013789073.1\|2471987_2472479_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015555.1\|WP_013786953.1\|2456871_2457312_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_015555.1\|WP_013789071.1\|2470718_2470982_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_015555.1\|WP_013789062.1\|2448996_2449812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290220

Protein	Function_ID	Function_description	E-value
NC_015555.1\|WP_013789065.1\|2452296_2453277_+\|DNA-replication-protein-DnaC	gnl\|CDD\|235871	PRK06835, PRK06835, DNA replication protein DnaC; Validated.	3.82684e-156
NC_015555.1\|WP_013789064.1\|2451332_2452304_+\|DnaD-domain-protein	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	8.12413e-26
NC_015555.1\|WP_013789078.1\|2478081_2479134_+\|DUF1646-domain-containing-protein	gnl\|CDD\|285138	pfam07854, DUF1646, Protein of unknown function (DUF1646). Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaebacterium Methanosarcina mazei.	2.27606e-117
NC_015555.1\|WP_013789075.1\|2474685_2475333_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	6.35344e-48
NC_015555.1\|WP_013789074.1\|2472497_2474714_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09195e-100
NC_015555.1\|WP_013789066.1\|2453273_2454716_-\|M1-family-metallopeptidase	gnl\|CDD\|341067	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains bacterial M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	1.1181e-168
NC_015555.1\|WP_013789076.1\|2475339_2476356_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.34237e-62
NC_015555.1\|WP_013789063.1\|2449945_2451151_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.74791e-50
NC_015555.1\|WP_013789067.1\|2454855_2455467_+\|sporulation-membrane-protein-YtaF	gnl\|CDD\|274321	TIGR02840, conserved_hypothetical_protein, putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein. [Cellular processes, Sporulation and germination].	2.31253e-37
NC_015555.1\|WP_013787204.1\|2458949_2460323_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.59885e-20
NC_015555.1\|WP_013789068.1\|2457496_2457676_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	0.00407422
NC_015555.1\|WP_013789070.1\|2469952_2470708_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.41367e-57
NC_015555.1\|WP_013789072.1\|2470983_2471976_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.54618e-174
NC_015555.1\|WP_013789077.1\|2476374_2477754_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	7.18729e-49
NC_015555.1\|WP_013789073.1\|2471987_2472479_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.26608e-62
NC_015555.1\|WP_013786953.1\|2456871_2457312_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.56944e-53
NC_015555.1\|WP_013789071.1\|2470718_2470982_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.03548e-25
NC_015555.1\|WP_013789062.1\|2448996_2449812_-\|hypothetical-protein	gnl\|CDD\|290220	pfam13485, Peptidase_MA_2, Peptidase MA superfamily.	1.85194e-05

>NC_015555.1|WP_013787204.1|2458949_2460323_-|transposase
MNSITQNYQIDNKVSTSIKSFFKKYRISAALRLSNAYKSKGIPVISIFEYLFCMIFTNRSMYMNMLMGTNQVGFKKDTVYRFLNSIHINWIRFTTWLSAQIINETITGLTSDKRVNVLIVDDSLFERSSSKKVELLAKVYDHAKKTYKYGFRLLTLGWSDGNTFIPVNGCLLSTENQKNRINEAIPVDKRSAGYLRRNLSQTKATAVALELIKTAKKAMIPASYVLFDTWFCSPSSLIAIKEIGYDVIAMAKKTSKMHYLYNGIMQPLTEIYKQNRKRRGRSRYLLSVEVSIEKDGKSIPARIVFVRNRNNRKDYLALITTDMNLNEDEIIRIYGKRWDIEVFFKVCKSYLKLSKECNSLSYDAMTAHTAIVFTRYMMLALENRRSSDLRTMGEIFYYIQDEMSDITLIQAFHLLMQVFIDTITDKLSLSSEQLDQLLDAFMAAIPKELKERLPKCA
>NC_015555.1|WP_013789069.1|2457728_2457983_-|hypothetical-protein
MSDYALNKKHLIDLRGKDKVIVFEKAWEYNKDNYKDLIKVVKDNPNNYPAVPKGELEYGKSYEITMMIKGSNGKTVKIKLSDNK
>NC_015555.1|WP_013789068.1|2457496_2457676_-|DUF4926-domain-containing-protein
MEIDELDVVKLKDGREGTVVHKYPAGILLQAYEIEFDDGETETIKEDEIDKVLWIAKAH
>NC_015555.1|WP_013786953.1|2456871_2457312_-|IS200/IS605-family-transposase
MQNYRKSSHATYDLKYHIVWITKYRKPVLVGKIAERTRELIRMVCKNNEVEILSGHVSKDHIHILVSAPPHLSVSKLVQYIKGYSSRKLLMENKELNKQFWGQHLWARGYFAASSGNVTDEVIIEYIQNQDIEENQKNDNFTLGEF
>NC_015555.1|WP_013789067.1|2454855_2455467_+|sporulation-membrane-protein-YtaF
MHFIYSLFIALANNIDNISVRIAYSVRGIKITAVKNLWISLITFIISSIAAMSGNIISGVLSKHISSILSMILFISIGLWIAIEPYFKKNSNSPYDMNDKAKNIYDILKKPEEADVDDSKDIDFKEATFLGIALSINNIGGGLSAGMIGLNSFFIGFLSALISFIALWIGNYVTDFLNRWNFRKKATVIAGLILILIGIKQII
>NC_015555.1|WP_013789066.1|2453273_2454716_-|M1-family-metallopeptidase
MKSKKYIWLVILVAAIGLLIYFAPIKNSNRTVYNMDLKYNDKDKTIIGTEVVDFINTYDVNLSEVYMHLYPNAFKDKSKVPFTKEEIGLAYPNGFKPGYIEINGVTFGKNEKATYSIDQKTGEILKILLPKKLEKGDRISFAIGFKVQIPPSCGRFGYGNNTIQVTNFYPILSVYDQNGWNNDPYYALGDPFYSDVSNYKVKLAVPKGMEVATTGVVKSKARQGDMDVLTIDAPNVRDFAVVMSSKFKVAEGDVDGIKVKSYYFDEDSGLKALKYAQDAIRFYNSYIGKYPYKEYSVVESDFYMGGMEYPNLVFISKDLYSKDNLFNLEYVIAHETAHQWWYGVVGNNEVREAWLDEGLTEYTTIMYIERYYGKATADAVFKSIISGEFYKFSKTNKDDGMVKTLGQFKDWNDYTNIVYNKGAMVFNELRNLIGDEKFKEVLDKYYSDYKYKNATTQNLIDVVDSVTGKDTGGFFEEWLD
>NC_015555.1|WP_013789065.1|2452296_2453277_+|DNA-replication-protein-DnaC
MNNLVQEVLREYDMLRDKSLKEALSRREEVYRKIPQISQIDDKIKEIGIEISKAIFLNPQNQKEFLENLRHKLIYLKKEKAGLLKLNGYPETYMEQEYECNICKDTGFVNNKRCRCFEQKLINLYYKQSSIEEITKIENFDNFDYHLYSDKPYKGKMSPRENIKSIVEVAKDFIDYFDVEKESLFFYGDSGLGKTFLSHCVAKELLDKGKVVLYRTAPDLVEGLRLNKLNSDNDSYYEYTDLLRECDLLIIDDLGTEPITPFSLQEIFSIVNARLLANKKFIISTNLPLSEVMNIYPERLCSRILGNFKLLNFYGDDIRIKRKTIN
>NC_015555.1|WP_013789064.1|2451332_2452304_+|DnaD-domain-protein
MSRCNFSNDFDDMGSTPVSNFFINHYMLEAPGEYVKVYLLGLKYSYYNQSFSMEEMADKLFMSENDIDKALKFWERSGVIRLRYSDNEYYIEYLPLVKKSDDVHTLSIDDTEVKQMFETVEKMIGRPLSPTEMNTYLSWVDEYGFSLEILTMLISYCVSKNKTSLKYMEKVAIAWHDAGLKTALDVEAYLKSESEKWIRYKKILRALGLKDDDVMEAHKAMMDRWMDDLGFDVDVIIKACDECVLKINEPSFPYINQILINWYNDGIRTVNDLDKIKKKPYTKKTTPNYKVPKNYFNGYSQRTYDVDELEKKLLAHSRGEFGE
>NC_015555.1|WP_013789063.1|2449945_2451151_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MDNEDKSNPFSCNLIKKVSIKRRFILTATLTILFAVVFYIGIDKSAFFSTEDQSLNHFAYSVEQGRFVRIDRPTAIVVDGFNVVTLKNREDALWVLNDILDKYKNGSMKVYFKNDVKLVEVDSPAVKIETVGEALKKLEGDDVETYTVKDHDTLWSISRKFSISLDDIYKLNPMVTTTIFKGQILKVKELKPVLTVVSERKIVYMDDIPHETVYQKDGDMFANASKVVANGEDGVKIVTAVLKYYNGQISEKDVINEEVVKDPADEIVSVGTKNLSTAIALDYPIRGHIVITSRYGQRWGRLHAGIDIAASMNDPIYAADGGTVVFAGWENGYGNLVEVDHGNGYVTYYGHASKLLVKKGDKVNKGQEIALVGMTGNTTGPHVHFEVRKNGVPVNPMMYLK
>NC_015555.1|WP_013789062.1|2448996_2449812_-|hypothetical-protein
MKKNKIIVAIVFIAFVLALLFNESILTKAYPVYKVIGKDKIEESVKNFKTKESKHFIVRYQDSDSKYVSLIIDTAEKHYYGVIKDLGYAPKDKSVIIVYSNPDEMNKDFSLAKGENAMGIYLNGVISIESPALWIPSGQDVTKVFQYEGPVVHEFTHLVVDDIAKGNYPTWFTEGIALLEEYRQDGYEWGKDLSYNGKPYTFDQLENNFDSLDEMLAYKRAFQVTKAISDKFGMETIREMLRDLGSGMSIESSFYKETGLKLDTFVNNVKG
>NC_015555.1|WP_013789070.1|2469952_2470708_-|CRISPR-associated-endoribonuclease-Cas6
MRIKITLLPEEDKSLNINYNYFLSGWVYNTLKKANREFAEHLHEKGYKYGKKVFKLFTFSQLRSKKLKIIDDEIMFLDETYLYITSPKKEFMLNFVTEVLNNEFLKLQDYQFRIKSVEMLKEPEFSNREDKFICLSPIVMSTAIEIDGKRKSINLPLHDSQFIENIKNNLIEKYYVLYNTLPDNLNINIDFDVNYYMKNPNGKRIKFKNVYVKGYMVPFKMSGNPDLIKVAYECGLGEKNSAGFGMIQKIK
>NC_015555.1|WP_013789071.1|2470718_2470982_-|CRISPR-associated-endonuclease-Cas2
MYVLIVYDVDEKKVAKVNKYLKTYLNWVQNSVFEGELTEAQLNRIMLWFKGHLDLESDSVLIYTASSQKWLSKRIIGIEKNSTDNIL
>NC_015555.1|WP_013789072.1|2470983_2471976_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKSIYINTSGRLSRKDNTIFFESETFGKKFIPVNNVEEIFLFGEIDFNTKAINFLAQNNITVHVFNYYGYYSGSFYPREHLPSGFLLVKQVEKYKDDVERLNIAKEIINGASHNILKNIKYYANRKEGLDEFVERIENERKNLKDIKTINELMGVEGRIRNIYYSAFETIIDGKFVFKNRTMNPPDNPINALISFGNSMMYSIVLTEIYNTQLNPTISYLHEPGERRFSLSLDISEIFKPIIIDRIIFSLINQKMIREEHFDQDLELCYLNEKGRVIFQREFEEKLGTIIKHPGLNRSVSYRRLIRLECYKIIKHLLDEEKYESLKMWW
>NC_015555.1|WP_013789073.1|2471987_2472479_-|CRISPR-associated-protein-Cas4
MDLVTGTEINYYFVCKHKLWLFTHGINMEHNSDYVDIGNAIHEKSFQREDKEILLDERIKIDFIKNQMEIHETKKSKAMEEATKYQVLYYIYYLKTKGMENVKGVIHYMDNHSKEEINLSEEDENEIKKIIGEINKIKSADKPPAIVKSRVCTKCSYYELCFS
>NC_015555.1|WP_013789074.1|2472497_2474714_-|CRISPR-associated-helicase/endonuclease-Cas3
MGKKILAKSSKYGEETLIQHTQNALQVFESLKNAYPEVVEICNEEKFYEYLFTAIFLHDFGKAAEGFQRMLKEGKPWGYRHEIISAGFISCLSYPDDVRKDIALAIITHHRDLYELQESYSTLTISGKDNYVKRLKELDGNIKYLQYMIGEVPEWSKEYLGYEIRLKQVESIEEIQDVFYFAVREYLNDYEDKKVVKNKRKLFLRGFLTACDHLSSASQEEIIKAISDMEVLFKFDKYKDTQLKAMNTKGSAVLIAPTGYGKTEASLLWSNYNQNKSKGKRVFYVLPYTASINAMYNRLKNSFGDESVALLHGKAFYFLYKEFAKSGEDYFDAVNKAKTKYDLSKKIFKPYKVLTPFQILKYFFSVTGFEQHIGEMAGGLFIVDEVHSYDPHTTALILESLKYLKEEYKAEIFIMSATLPEFLKKLFMKELNIESLIEPNKEEIKAIARHKVSVIGGDVFFNISRIIKDIKEDKKVLIVCNTVDRAQKIYNELKKYTNKSVLLHSRFVLKDRERIENSLNKVQLLVGTQAIEVSLDIDFDILYTEPAPIDALIQRFGRVNRKGIKNASPVYIFSKGSEEDKFVYKNQKVVNTTLELLSNCNILSEDLIQNLVNETYKNGYDDKDYKEFLKARESFKSVISQLYPFIENKHLKEEFYEMFDNREVVPYIFKEEYIDKVKNKEYFEAAGYMVGISQRRYISLKKQGLIENNGYDVDFVYCEYDKDLGLLIGNTYDNIFTP
>NC_015555.1|WP_013789075.1|2474685_2475333_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLRVHLVGWTASFRYPIFITGYQPTLPVPPVSTIYGLISAAKGEYVTPLNTKVGYVMRSEAKGVDLETIYMLSSDNSAKSNVYKREFLLNPDLYVYLTDLSFKEIFKKPEYPLLLGRSSDLMMVEEVKEVDLMQKHGNKKVGGTVVPFEEEGIWGPLQALPMYFSNTIPREAIGIKPYYILKDFIEYNGDNFWYDDELDWGVYLHGQENISQK
>NC_015555.1|WP_013789076.1|2475339_2476356_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNNVNGFMLIDAPASALNNAGPDIGAKTENTIAVKKIRRGKGEYVYVSGQAFRFWMRSSLENVFGWELSPIEREAKIAFTAADPFKYPDDDVFGYMRAIGKKSGITLTRISPFKCSPLISVTPVNIVNDFGVMARHEGDPVPYEHEFYSTVLKGIFSLDLDSVGRFSSENKTGYMNITEAYKKEWEEYNCFVEEHGKIVTLPLEVRAKRASDLIGVLPYIFGGAKQTSHLTDVSPKFLVLAILNCGNNIFMNIAVDDKGEAAINVKALKEVIVDYRENIISDVYIGKREGFMDEYNEDLKRMVNELNDTLLKNIKVHLLTVNEAVSKFQQVVSGFYKR
>NC_015555.1|WP_013789077.1|2476374_2477754_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MNNIFTYTGNPFVDAGITAMLVWLDKGKPEEIEDYEVRSLFAELTDLYVQKSWNKIMYSIFPNSKLTNPSVKDKKGEYDKLLNELLSEVLVLGNSGNCIACGKRDSKRHFTKTQVPLTGTSDFMNFFSYGKGGADYCSACALAIQFSPLIFYKCGNLVCVQSNNKEAERIYAKKCKSFIDIQKATKNYTGCNDEGYTNPVNALFHLVTDIILTYDRREWYKENTNIRLYYFTNFNQPPLDNLSIYDMPDEIFKFLAYALQHEEKDNWKKVIKRGYFTTKKVNLDEEDEYKNLHNDVYERLLRGQSILRYFVDVNERKTLIKWGFLEYYMKEVRKMEAKRLDTIKKVADDIANVIKIRGNIKRLIQLENAKNYGEFRNVLRLIIKERISAGFEKPLFSIDEYEKYLFPEGNLSWRETQDLIIFRLYEQLHDWLINNDKEIKEDLVEEDETISKDEDIEMI
>NC_015555.1|WP_013789078.1|2478081_2479134_+|DUF1646-domain-containing-protein
MINAILFAILLIILTVPFFVKAIEDNIEYFLFVMGIIAVTVSGAMSLDLLSHILKNHLLYIITAAVFISGLLFEIFKIKIKEFVKSILNHISLKIFVFMLIVVLGLTSSIITAIVASLVLVEIVHILPIHHKDKVVITVIACLSIGLGAALTPVGEPLSTLVISALKKDFFYLLRTIGIYIVPAIFVMGILGAFYVNRFADNAKPKQEEEYFKEEEMEIRQIENIKFIVIRSIKIFIFLLALELLSAGFKPLVDNYVMHMNVRLLYWVNMISAVLDNATLAAAEISPAMDPEHIRAILMGLLISGGMLIPGNIPNIISAGKLEIKSKEWAKIGIPISMAVLVVCYIFVFI
>NC_015555.1|WP_013789079.1|2479197_2479869_-|hypothetical-protein
MDKIRLERFDSYGYARYICTSCYHCESKMGISYCSIKMRGCCSYFPKFELVDIHRMVKSTEGLNVLNRIIDNPGTVVYSYYIHAKGYFDKEGYEKYIKTNDDDIGIKDKTIFFRACPFVKSGFGCTLPPVYRNYVCNFFICDEVMSKVTDDIVKGQYIRERERFVKWAEWENRSLEAILSERHINLRNNFEECIKVLQDVPLTIFEFAQLKELSVFDTDEKEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015555_3	3.63\|2392694\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2392694-2392728	35	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	33917-33951	0	1.0
NC_015555_4	4.9\|2458589\|37\|NC_015555\|CRISPRCasFinder,PILER-CR,CRT	2458589-2458625	37	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	21009-21045	0	1.0
NC_015555_5	5.8\|2460977\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2460977-2461012	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	33849-33884	0	1.0
NC_015555_5	5.13\|2461308\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2461308-2461343	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	33849-33884	0	1.0
NC_015555_5	5.47\|2463561\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463561-2463596	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	22129-22164	0	1.0
NC_015555_5	5.48\|2463627\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463627-2463662	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	24061-24096	0	1.0
NC_015555_5	5.70\|2465084\|37\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2465084-2465120	37	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	38015-38051	0	1.0
NC_015555_5	5.90\|2466405\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466405-2466439	35	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	40831-40865	0	1.0
NC_015555_5	5.90\|2466405\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466405-2466439	35	MA388815	JP 2018513681-A/12: CAS 9 RETROVIRAL INTEGRASE AND CAS 9 RECOMBINASE SYSTEMS FOR TARGETED INCORPORATION OF A DNA SEQUENCE INTO A GENOME OF A CELL OR ORGANISM	460-494	0	1.0
NC_015555_5	5.90\|2466405\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466405-2466439	35	LQ657976	Sequence 23 from Patent WO2016161207	460-494	0	1.0
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	360-394	0	1.0
NC_015555_5	5.98\|2466932\|37\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466932-2466968	37	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	7588-7624	0	1.0
NC_015555_5	5.110\|2467729\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467729-2467764	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	6020-6055	0	1.0
NC_015555_5	5.6\|2460845\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2460845-2460880	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	31744-31779	1	0.972
NC_015555_5	5.11\|2461176\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2461176-2461211	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	31744-31779	1	0.972
NC_015555_5	5.46\|2463496\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463496-2463530	35	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	22825-22859	1	0.971
NC_015555_5	5.136\|2469448\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2469448-2469483	36	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	69095-69130	1	0.972
NC_015555_5	5.136\|2469448\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2469448-2469483	36	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	18443-18478	1	0.972
NC_015555_3	3.76\|2393567\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2393567-2393601	35	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	9048-9082	2	0.943
NC_015555_5	5.45\|2463429\|37\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463429-2463465	37	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	30533-30569	2	0.946
NC_015555_5	5.51\|2463824\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463824-2463859	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	31926-31961	2	0.944
NC_015555_5	5.114\|2467995\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467995-2468030	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	9280-9315	2	0.944
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	3407-3443	3	0.919
NC_015555_3	3.72\|2393293\|39\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2393293-2393331	39	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	6059-6097	3	0.923
NC_015555_5	5.84\|2466009\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466009-2466044	36	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	11459-11494	4	0.889
NC_015555_5	5.35\|2462768\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2462768-2462803	36	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	21420-21455	5	0.861
NC_015555_5	5.35\|2462768\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2462768-2462803	36	NC_007917	Clostridium phage phi CD119, complete genome	21420-21455	5	0.861
NC_015555_5	5.35\|2462768\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2462768-2462803	36	NC_028996	Clostridium phage phiCDHM19, complete genome	21673-21708	5	0.861
NC_015555_5	5.35\|2462768\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2462768-2462803	36	LN681538	Clostridium phage phiCD481-1, complete genome	15031-15066	5	0.861
NC_015555_5	5.40\|2463098\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463098-2463133	36	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	21420-21455	5	0.861
NC_015555_5	5.40\|2463098\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463098-2463133	36	NC_007917	Clostridium phage phi CD119, complete genome	21420-21455	5	0.861
NC_015555_5	5.40\|2463098\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463098-2463133	36	NC_028996	Clostridium phage phiCDHM19, complete genome	21673-21708	5	0.861
NC_015555_5	5.40\|2463098\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463098-2463133	36	LN681538	Clostridium phage phiCD481-1, complete genome	15031-15066	5	0.861
NC_015555_5	5.21\|2461839\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2461839-2461873	35	MT430910	Streptococcus phage smHBZ8, complete genome	12098-12132	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	61758-61792	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_CP011157	Bacillus cereus strain HN001 plasmid pRML02, complete sequence	124492-124526	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	AP013984	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7A-MedDCM-OCT-S44-C181, * SEQUENCING IN PROGRESS *	11352-11386	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	AP013528	Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23	4563-4597	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	154-188	7	0.8
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	AP013524	Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7-MedDCM-OCT-S39-C15	28116-28150	7	0.8
NC_015555_3	3.63\|2392694\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2392694-2392728	35	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	313237-313271	8	0.771
NC_015555_4	4.6\|2458392\|35\|NC_015555\|CRISPRCasFinder,PILER-CR,CRT	2458392-2458426	35	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	747340-747374	8	0.771
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP019713	Lactobacillus plantarum strain Q7 plasmid unnamed1, complete sequence	2009-2043	8	0.771
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NC_024988	Lactobacillus plantarum subsp. plantarum plasmid pZL4, complete sequence	6630-6664	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	19698-19732	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT080596	UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome	1729-1763	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT080593	UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome	43933-43967	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT080586	UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome	4555-4589	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT080594	UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome	59513-59547	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT080582	UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome	77416-77450	8	0.771
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	38785-38819	8	0.771
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693213	Marine virus AFVG_25M174, complete genome	27593-27628	8	0.778
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693464	Marine virus AFVG_25M123, complete genome	6299-6334	8	0.778
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693599	Marine virus AFVG_25M122, complete genome	28464-28499	8	0.778
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693280	Marine virus AFVG_25M171, complete genome	27583-27618	8	0.778
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693251	Marine virus AFVG_25M125, complete genome	6333-6368	8	0.778
NC_015555_5	5.109\|2467663\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2467663-2467698	36	MN693438	Marine virus AFVG_25M124, complete genome	27835-27870	8	0.778
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	NZ_KY290886	Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence	70054-70090	9	0.757
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	NZ_CP027515	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence	26919-26955	9	0.757
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	NC_007594	Enterococcus faecium plasmid pHT beta, complete sequence	30718-30754	9	0.757
NC_015555_3	3.13\|2389366\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2389366-2389400	35	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	126062-126096	9	0.743
NC_015555_3	3.55\|2392164\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2392164-2392198	35	NZ_CP022542	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence	63939-63973	9	0.743
NC_015555_4	4.10\|2458656\|34\|NC_015555\|CRISPRCasFinder,PILER-CR,CRT	2458656-2458689	34	MN693819	Marine virus AFVG_250M848, complete genome	31700-31733	9	0.735
NC_015555_5	5.2\|2460580\|37\|NC_015555\|CRISPRCasFinder,CRT	2460580-2460616	37	NC_016571	Pseudomonas phage OBP, complete genome	281710-281746	9	0.757
NC_015555_5	5.46\|2463496\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463496-2463530	35	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	33504-33538	9	0.743
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NC_004997	Campylobacter jejuni plasmid pCJ419, complete sequence	3933-3967	9	0.743
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP017864	Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence	838-872	9	0.743
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NC_012473	Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence	10713-10747	9	0.743
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP009317	Bacillus cereus 03BB102 plasmid unnamed, complete sequence	126176-126210	9	0.743
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NC_019009	Staphylococcus aureus plasmid SAP078A, complete sequence	22251-22286	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP035102	Staphylococcus aureus subsp. aureus strain ATCC 12600 plasmid unnamed, complete sequence	12600-12635	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP026065	Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed	2599-2634	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP026065	Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed	38079-38114	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP020021	Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence	26937-26972	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP011527	Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence	23385-23420	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NC_018965	Staphylococcus aureus plasmid SAP077A, complete sequence	26654-26689	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NC_013322	Staphylococcus aureus plasmid SAP019A, complete sequence	3842-3877	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NC_013340	Staphylococcus aureus plasmid SAP076A, complete sequence	21548-21583	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP009362	Staphylococcus aureus subsp. aureus strain ATCC 25923 plasmid pS1945, complete sequence	3842-3877	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	24408-24443	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_AP014943	Staphylococcus aureus strain FDA209P plasmid pFDA209P, complete sequence	14891-14926	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP040999	Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence	23417-23452	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP021906	Staphylococcus aureus strain Seattle 1945 isolate G477 plasmid pG477, complete sequence	3842-3877	9	0.75
NC_015555_5	5.63\|2464619\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2464619-2464654	36	NZ_CP028469	Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence	20540-20575	9	0.75
NC_015555_5	5.92\|2466538\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466538-2466572	35	MN855951	Siphoviridae sp. isolate 353, complete genome	4911-4945	9	0.743
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	32110-32144	9	0.743
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	FN668942	Clostridium difficile BI1 plasmid pCDBI1, complete sequence	31455-31489	9	0.743
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	27432-27466	9	0.743
NC_015555_5	5.95\|2466735\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466735-2466769	35	MT520979	Enterococcus phage vB_EfaS-271, complete genome	1922-1956	9	0.743
NC_015555_5	5.119\|2468324\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2468324-2468358	35	KT070866	Bacillus phage PBC4, complete genome	36719-36753	9	0.743
NC_015555_3	3.1\|2388564\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388564-2388600	37	NZ_CP009061	Borreliella afzelii K78 plasmid lp17, complete sequence	18330-18366	10	0.73
NC_015555_3	3.1\|2388564\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388564-2388600	37	NC_017232	Borreliella afzelii PKo plasmid lp17, complete sequence	17945-17981	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019135	Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome	117427-117463	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019114	Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome	117339-117375	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019138	Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome	117338-117374	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019122	Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome	117328-117364	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019055	Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome	117432-117468	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019038	Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome	117211-117247	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019068	Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome	117335-117371	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019137	Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome	117427-117463	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019157	Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome	117430-117466	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019087	Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome	117331-117367	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019076	Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome	117335-117371	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019065	Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome	117326-117362	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019026	Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome	117340-117376	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019081	Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome	117339-117375	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019033	Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome	117182-117218	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	NC_023584	Synechococcus phage S-MbCM100, complete genome	117615-117651	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019153	Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome	117334-117370	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019158	Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome	117430-117466	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019067	Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome	117339-117375	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019039	Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome	117342-117378	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019030	Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome	117431-117467	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019163	Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome	117326-117362	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019116	Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome	116834-116870	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019088	Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome	117414-117450	10	0.73
NC_015555_3	3.5\|2388831\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2388831-2388867	37	KJ019084	Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome	117336-117372	10	0.73
NC_015555_3	3.13\|2389366\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2389366-2389400	35	KX712143	Sulfolobus islandicus rudivirus 3 isolate SIRV3, complete genome	27850-27884	10	0.714
NC_015555_3	3.14\|2389431\|38\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2389431-2389468	38	AP013440	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C19-MedDCM-OCT-S26-C54	25329-25366	10	0.737
NC_015555_3	3.28\|2390364\|37\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2390364-2390400	37	NZ_CP042421	Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence	11478-11514	10	0.73
NC_015555_3	3.82\|2393963\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2393963-2393997	35	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	222377-222411	10	0.714
NC_015555_3	3.82\|2393963\|35\|NC_015555\|PILER-CR,CRISPRCasFinder,CRT	2393963-2393997	35	NZ_LR135260	Enterococcus faecium isolate E4457 plasmid 3	363-397	10	0.714
NC_015555_4	4.10\|2458656\|34\|NC_015555\|CRISPRCasFinder,PILER-CR,CRT	2458656-2458689	34	MN694366	Marine virus AFVG_250M1050, complete genome	19236-19269	10	0.706
NC_015555_5	5.84\|2466009\|36\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2466009-2466044	36	AP014312	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C72, * SEQUENCING IN PROGRESS *	17843-17878	10	0.722
NC_015555_4	4.3\|2458157\|71\|NC_015555\|CRISPRCasFinder	2458157-2458227	71	CP003186	Thermoanaerobacterium phage THSA-485A, complete genome	36309-36379	11	0.845
NC_015555_4	4.10\|2458656\|34\|NC_015555\|CRISPRCasFinder,PILER-CR,CRT	2458656-2458689	34	MG592390	Vibrio phage 1.003.O._10N.286.48.A2, partial genome	27780-27813	11	0.676
NC_015555_5	5.43\|2463296\|37\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463296-2463332	37	MN693171	Marine virus AFVG_25M555, complete genome	31467-31503	11	0.703
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP012277	Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-2, complete sequence	9707-9741	11	0.686
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP014631	Lactobacillus backii strain TMW 1.1988 plasmid L11988-7, complete sequence	606-640	11	0.686
NC_015555_5	5.50\|2463759\|35\|NC_015555\|CRISPRCasFinder,CRT,PILER-CR	2463759-2463793	35	NZ_CP012289	Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-1, complete sequence	11240-11274	11	0.686

1. spacer 3.63|2392694|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

attattagcatattcaatatttttattcttatgca	CRISPR spacer
attattagcatattcaatatttttattcttatgca	Protospacer
***********************************

2. spacer 4.9|2458589|37|NC_015555|CRISPRCasFinder,PILER-CR,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

caacataaatgttaaaagacaatgcaggtatacctgt	CRISPR spacer
caacataaatgttaaaagacaatgcaggtatacctgt	Protospacer
*************************************

3. spacer 5.8|2460977|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

aatttctatgagacattagaaaatttgcatgaaaaa	CRISPR spacer
aatttctatgagacattagaaaatttgcatgaaaaa	Protospacer
************************************

4. spacer 5.13|2461308|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

aatttctatgagacattagaaaatttgcatgaaaaa	CRISPR spacer
aatttctatgagacattagaaaatttgcatgaaaaa	Protospacer
************************************

5. spacer 5.47|2463561|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

tgaaggagggggaggcagcgtaaaagagacagaaca	CRISPR spacer
tgaaggagggggaggcagcgtaaaagagacagaaca	Protospacer
************************************

6. spacer 5.48|2463627|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

aatcaattcctggcatgtttcacagactgcattcgt	CRISPR spacer
aatcaattcctggcatgtttcacagactgcattcgt	Protospacer
************************************

7. spacer 5.70|2465084|37|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

cgaaaaagagatgattaaaaacattcccgggaggcag	CRISPR spacer
cgaaaaagagatgattaaaaacattcccgggaggcag	Protospacer
*************************************

8. spacer 5.90|2466405|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

caggaaggtaattatttatcaccattgccacctta	CRISPR spacer
caggaaggtaattatttatcaccattgccacctta	Protospacer
***********************************

9. spacer 5.90|2466405|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MA388815 (JP 2018513681-A/12: CAS 9 RETROVIRAL INTEGRASE AND CAS 9 RECOMBINASE SYSTEMS FOR TARGETED INCORPORATION OF A DNA SEQUENCE INTO A GENOME OF A CELL OR ORGANISM) position: , mismatch: 0, identity: 1.0

caggaaggtaattatttatcaccattgccacctta	CRISPR spacer
caggaaggtaattatttatcaccattgccacctta	Protospacer
***********************************

10. spacer 5.90|2466405|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to LQ657976 (Sequence 23 from Patent WO2016161207) position: , mismatch: 0, identity: 1.0

caggaaggtaattatttatcaccattgccacctta	CRISPR spacer
caggaaggtaattatttatcaccattgccacctta	Protospacer
***********************************

11. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
gaattaaaaaagaaaatagaagaagaatgtaaaaa	Protospacer
***********************************

12. spacer 5.98|2466932|37|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

agcagtaataggaacagttatatatatgattgttagg	CRISPR spacer
agcagtaataggaacagttatatatatgattgttagg	Protospacer
*************************************

13. spacer 5.110|2467729|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 0, identity: 1.0

tgctgtaaaaacattacagcaacaattaaatcaatt	CRISPR spacer
tgctgtaaaaacattacagcaacaattaaatcaatt	Protospacer
************************************

14. spacer 5.6|2460845|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 1, identity: 0.972

taccgaaaatttctgacgtgatctcatgtacttttc	CRISPR spacer
tgccgaaaatttctgacgtgatctcatgtacttttc	Protospacer
*.**********************************

15. spacer 5.11|2461176|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 1, identity: 0.972

taccgaaaatttctgacgtgatctcatgtacttttc	CRISPR spacer
tgccgaaaatttctgacgtgatctcatgtacttttc	Protospacer
*.**********************************

16. spacer 5.46|2463496|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 1, identity: 0.971

tggtctaatcttgcaagtgcgtttctcacatgagc	CRISPR spacer
tggtctaatcttgcaagtgcgtttctcacatgtgc	Protospacer
******************************** **

17. spacer 5.136|2469448|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 1, identity: 0.972

tactgttattaatattcctagagcatatattttaaa	CRISPR spacer
tactgttattaatattccaagagcatatattttaaa	Protospacer
****************** *****************

18. spacer 5.136|2469448|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 1, identity: 0.972

tactgttattaatattcctagagcatatattttaaa	CRISPR spacer
tactgttattaatattccaagagcatatattttaaa	Protospacer
****************** *****************

19. spacer 3.76|2393567|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.943

ggctatactcctgtcaacaaagcaggggatacgat	CRISPR spacer
ggctatactcctgtcaacaaagcaggggattcaat	Protospacer
****************************** *.**

20. spacer 5.45|2463429|37|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.946

caagtatacaaaaaacatccatttctaaaagaaaaag	CRISPR spacer
gaagtatacaaaaaacatccattcctaaaagaaaaag	Protospacer
 **********************.*************

21. spacer 5.51|2463824|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.944

-agcaactggatcatcaaagttaagaggtgctaagtc	CRISPR spacer
tagc-actggttcatcaaagttaagaggtgctaagtc	Protospacer
 *** ***** **************************

22. spacer 5.114|2467995|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.944

ctacatagcttgtcgtcatattatcccatatcacaa	CRISPR spacer
ctacatagcttgtcgttatattatcccatattacaa	Protospacer
****************.**************.****

23. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 3, identity: 0.919

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
aattttaaaaaaggagattgatgaaaatgttaagtaa	Protospacer
**********************.**********. **

24. spacer 3.72|2393293|39|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 3, identity: 0.923

tagaggaggtaattctatgttacaaaaaggaagtacagg	CRISPR spacer
aacaggaggtaattctatgttacaaagaggaagtacagg	Protospacer
 * ***********************.************

25. spacer 5.84|2466009|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 4, identity: 0.889

tatcattttctgtattaagctgttgtcatcaagcgg	CRISPR spacer
tatcattttctgtattaagctgttgtcatcttctgg	Protospacer
******************************   .**

26. spacer 5.35|2462768|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

27. spacer 5.35|2462768|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

28. spacer 5.35|2462768|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

29. spacer 5.35|2462768|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

30. spacer 5.40|2463098|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

31. spacer 5.40|2463098|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

32. spacer 5.40|2463098|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

33. spacer 5.40|2463098|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 5, identity: 0.861

tgttttgtagatacagcgacttggggattggatttg	CRISPR spacer
ttctttgtagatacagccacttggggattggattat	Protospacer
* .************** ****************

34. spacer 5.21|2461839|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 7, identity: 0.8

-tttggcagcaacagcaatagattttactacagcat	CRISPR spacer
agttggt-gcaacagcagtagatttaactacagtac	Protospacer
  ****. *********.******* *******.*.

35. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
gaattaaaagagaaattagaagaagaaatgaagat	Protospacer
*********.***** ***********   **.*

36. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
gaattaaaagagaaattagaagaagaaatgaagat	Protospacer
*********.***** ***********   **.*

37. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AP013984 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7A-MedDCM-OCT-S44-C181, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa---	CRISPR spacer
caattaaaaaataaaatagcagaagag---aaaaactt	Protospacer
 ********** ******* ******.   *****

38. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AP013528 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa---	CRISPR spacer
caattaaaaaataaaatagcagaagag---aaaaactt	Protospacer
 ********** ******* ******.   *****

39. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
gaattagaaaagaaaatacaagaagcaaagaaaca	Protospacer
******.*********** ****** * . *** *

40. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AP013524 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7-MedDCM-OCT-S39-C15) position: , mismatch: 7, identity: 0.8

gaattaaaaaagaaaatagaagaagaatgtaaaaa---	CRISPR spacer
caattaaaaaataaaatagcagaagag---aaaaactt	Protospacer
 ********** ******* ******.   *****

41. spacer 3.63|2392694|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 8, identity: 0.771

attattagcatattcaatatttttattcttatgca	CRISPR spacer
attatttgcatattcaatatttttacgaatatagc	Protospacer
****** ******************.   ***.

42. spacer 4.6|2458392|35|NC_015555|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

ggagctgcggctggcgatattttattaggtgctcc	CRISPR spacer
ggagctgtggctggcgttattttattctttaccgc	Protospacer
*******.******** *********   *.*. *

43. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019713 (Lactobacillus plantarum strain Q7 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

tcattta-tagcatttttaatttgttcattttttgt	CRISPR spacer
-aatagattagcaattttaatttgttcattcttatt	Protospacer
  **  * ***** ****************.**  *

44. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_024988 (Lactobacillus plantarum subsp. plantarum plasmid pZL4, complete sequence) position: , mismatch: 8, identity: 0.771

tcattta-tagcatttttaatttgttcattttttgt	CRISPR spacer
-aatagattagcaattttaatttgttcattcttatt	Protospacer
  **  * ***** ****************.**  *

45. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
gaattaaaagagaaattagaagaagaaatggagat	Protospacer
*********.***** ***********   .*.*

46. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT080596 (UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
aaaaaagctaagaaaatggaagaagaaggtaaaaa	Protospacer
.**  *.  ********.********* *******

47. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT080593 (UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
aaaaaagctaagaaaatggaagaagaaggtaaaaa	Protospacer
.**  *.  ********.********* *******

48. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT080586 (UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
aaaaaagctaagaaaatagaaaaagaaggtaaaaa	Protospacer
.**  *.  ************.***** *******

49. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT080594 (UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
aaaaaagctaagaaaatagaaaaagaaggtaaaaa	Protospacer
.**  *.  ************.***** *******

50. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT080582 (UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
aaaaaagctaagaaaatagaaaaagaaggtaaaaa	Protospacer
.**  *.  ************.***** *******

51. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.771

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
ggattaaaaaagagaaaagaagaagaagatgaatt	Protospacer
*.***********.** ********** .*.**

52. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693213 (Marine virus AFVG_25M174, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

53. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693464 (Marine virus AFVG_25M123, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

54. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693599 (Marine virus AFVG_25M122, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

55. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693280 (Marine virus AFVG_25M171, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

56. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693251 (Marine virus AFVG_25M125, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

57. spacer 5.109|2467663|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693438 (Marine virus AFVG_25M124, complete genome) position: , mismatch: 8, identity: 0.778

ggtgaaagagaaaaaggtggttattcagaagaagaa	CRISPR spacer
ggtgaaaaagaaagaggtggttattctcatgatcat	Protospacer
*******.*****.************  * **  *

58. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 9, identity: 0.757

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
acaatatgtaaaagagattgataaaaaagttaaaaaa	Protospacer
*   *  . ***.************** *********

59. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.757

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
acaatatgtaaaagagattgataaaaaagttaaaaaa	Protospacer
*   *  . ***.************** *********

60. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NC_007594 (Enterococcus faecium plasmid pHT beta, complete sequence) position: , mismatch: 9, identity: 0.757

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
acaatatgtaaaagagattgataaaaaagttaaaaaa	Protospacer
*   *  . ***.************** *********

61. spacer 3.13|2389366|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgcatctttttatccccttttattttttttct	CRISPR spacer
cttttcatttttttatccccttttataaatgtatt	Protospacer
.*** ***.*****************   * * .*

62. spacer 3.55|2392164|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 9, identity: 0.743

tggcagggcaatgtaatgcaatggttatgttatgc	CRISPR spacer
tggcagggccatgaaatgcaatggtcttgggcgac	Protospacer
********* *** ***********. **    .*

63. spacer 4.10|2458656|34|NC_015555|CRISPRCasFinder,PILER-CR,CRT matches to MN693819 (Marine virus AFVG_250M848, complete genome) position: , mismatch: 9, identity: 0.735

ttgcagttgtggctgttgctgctgcataaaatag	CRISPR spacer
ttgctgttgtggctgttgctgctgtgcctgctgg	Protospacer
**** *******************...  . *.*

64. spacer 5.2|2460580|37|NC_015555|CRISPRCasFinder,CRT matches to NC_016571 (Pseudomonas phage OBP, complete genome) position: , mismatch: 9, identity: 0.757

atatattgcattagcgaaagcagaattaaacgatgaa	CRISPR spacer
taatggagttttagcgaaagcagaattaatggatgaa	Protospacer
  **.  *. *******************  ******

65. spacer 5.46|2463496|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

tggtctaatcttgcaagtgcgtttctcacatgagc	CRISPR spacer
tcatttaatcttgcaagtacgtttctcgcaccatt	Protospacer
* .*.*************.********.**. * .

66. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_004997 (Campylobacter jejuni plasmid pCJ419, complete sequence) position: , mismatch: 9, identity: 0.743

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
ttctcaatagcatttttaattatttcatttttaag	Protospacer
*. *. ***************  ********* .

67. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017864 (Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence) position: , mismatch: 9, identity: 0.743

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
ttctcaatagcatttttaattatttcatttttaag	Protospacer
*. *. ***************  ********* .

68. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_012473 (Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence) position: , mismatch: 9, identity: 0.743

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
tcatttatagcctttttcatttgtttgaacatagt	Protospacer
*********** ***** *******..  . * **

69. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009317 (Bacillus cereus 03BB102 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
tcatttatagcctttttcatttgtttgaacatagt	Protospacer
*********** ***** *******..  . * **

70. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_019009 (Staphylococcus aureus plasmid SAP078A, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

71. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035102 (Staphylococcus aureus subsp. aureus strain ATCC 12600 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

72. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026065 (Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

73. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026065 (Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

74. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020021 (Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

75. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011527 (Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

76. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_018965 (Staphylococcus aureus plasmid SAP077A, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

77. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_013322 (Staphylococcus aureus plasmid SAP019A, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

78. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NC_013340 (Staphylococcus aureus plasmid SAP076A, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

79. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009362 (Staphylococcus aureus subsp. aureus strain ATCC 25923 plasmid pS1945, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

80. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029750 (Staphylococcus aureus strain Smith plasmid pSS41, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

81. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014943 (Staphylococcus aureus strain FDA209P plasmid pFDA209P, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

82. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040999 (Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

83. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021906 (Staphylococcus aureus strain Seattle 1945 isolate G477 plasmid pG477, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

84. spacer 5.63|2464619|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028469 (Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence) position: , mismatch: 9, identity: 0.75

aaacattggaggagttaaaaaaagaatataaaaaat	CRISPR spacer
gaagggttatggaattaaaaaaagaaaataaaaaat	Protospacer
.** . * . ***.************ *********

85. spacer 5.92|2466538|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN855951 (Siphoviridae sp. isolate 353, complete genome) position: , mismatch: 9, identity: 0.743

gaacttggatttacagaaaaagttaacaaatcatc	CRISPR spacer
aaagttggatttatagaaaaagttaagcaagaact	Protospacer
.** *********.************  **  *..

86. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
taattaaaaaagaaaatagaataaaaagtaactca	Protospacer
 ******************** **.**   *   *

87. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 9, identity: 0.743

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
taattaaaaaagaaaatagaataaaaagtaactca	Protospacer
 ******************** **.**   *   *

88. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
taattaaaaaagaaaatagaataaaaagtaactca	Protospacer
 ******************** **.**   *   *

89. spacer 5.95|2466735|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MT520979 (Enterococcus phage vB_EfaS-271, complete genome) position: , mismatch: 9, identity: 0.743

gaattaaaaaagaaaatagaagaagaatgtaaaaa	CRISPR spacer
caattcaaaaagaaaaaagaagaagaagagttata	Protospacer
 **** ********** ********** .   * *

90. spacer 5.119|2468324|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to KT070866 (Bacillus phage PBC4, complete genome) position: , mismatch: 9, identity: 0.743

ttaaacgacaaagttgttgttagaaaatgtttgtt	CRISPR spacer
gaattcaattaagtcgatgttagaaaatgtttgtt	Protospacer
  *  *.*. ****.* ******************

91. spacer 3.1|2388564|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009061 (Borreliella afzelii K78 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.73

tgaacgatgaagaaaaaagactatataaagctagaat	CRISPR spacer
gtactgatgaagaaaaaagagtagataaagcaattag	Protospacer
  * .*************** ** ******* *  *

92. spacer 3.1|2388564|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NC_017232 (Borreliella afzelii PKo plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.73

tgaacgatgaagaaaaaagactatataaagctagaat	CRISPR spacer
gtactgatgaagaaaaaagagtagataaagcaattag	Protospacer
  * .*************** ** ******* *  *

93. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019135 (Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

94. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019114 (Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

95. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019138 (Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

96. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019122 (Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

97. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019055 (Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

98. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019038 (Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

99. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019068 (Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

100. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019137 (Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

101. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019157 (Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

102. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019087 (Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

103. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019076 (Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

104. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019065 (Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

105. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019026 (Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

106. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019081 (Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

107. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019033 (Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

108. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NC_023584 (Synechococcus phage S-MbCM100, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

109. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019153 (Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

110. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019158 (Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

111. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019067 (Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

112. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

113. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019030 (Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

114. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019163 (Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

115. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019116 (Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

116. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019088 (Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

117. spacer 3.5|2388831|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KJ019084 (Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome) position: , mismatch: 10, identity: 0.73

aattttaaaaaaggagattgataaaaatgttaaaaaa	CRISPR spacer
tacttgccaacaggagattgataaaaattttaaattt	Protospacer
 *.**   ** ***************** *****

118. spacer 3.13|2389366|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to KX712143 (Sulfolobus islandicus rudivirus 3 isolate SIRV3, complete genome) position: , mismatch: 10, identity: 0.714

----ttttgcatctttttatccccttttattttttttct	CRISPR spacer
caaattcca----tttttatcaccttttatcttttttca	Protospacer
    **...    ******** ********.*******

119. spacer 3.14|2389431|38|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to AP013440 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C19-MedDCM-OCT-S26-C54) position: , mismatch: 10, identity: 0.737

ttctaattcttcttctttttctaaaaagtcattttttg	CRISPR spacer
atctaattcttctgctttttctaaaatgttacgaaata	Protospacer
 ************ ************ **.*.    *.

120. spacer 3.28|2390364|37|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042421 (Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

ccaaaaattatcaacgacaaaaacgatgatttgtatt	CRISPR spacer
tgctaaattatcaacgacacaaacgttgattaacaat	Protospacer
.   *************** ***** ***** ..* *

121. spacer 3.82|2393963|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046076 (Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence) position: , mismatch: 10, identity: 0.714

attcgcaacttcttcaacatcaagtaaataatttc	CRISPR spacer
aggaataacttcctcaacattaagtaaataaaaac	Protospacer
*   ..******.*******.**********   *

122. spacer 3.82|2393963|35|NC_015555|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135260 (Enterococcus faecium isolate E4457 plasmid 3) position: , mismatch: 10, identity: 0.714

attcgcaacttcttcaacatcaagtaaataatttc	CRISPR spacer
aggaataacttcctcaacattaagtaaataaaaac	Protospacer
*   ..******.*******.**********   *

123. spacer 4.10|2458656|34|NC_015555|CRISPRCasFinder,PILER-CR,CRT matches to MN694366 (Marine virus AFVG_250M1050, complete genome) position: , mismatch: 10, identity: 0.706

ttgcagttgtggctgttgctgctgcataaaatag	CRISPR spacer
tacttcttgtcgctgttgctgttgcataaaaagc	Protospacer
*  .  **** **********.********* .

124. spacer 5.84|2466009|36|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to AP014312 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.722

tatcattttctgtattaagctgttgtcatcaagcgg	CRISPR spacer
tatcatcttctgtagtaagctgttgttttatttcaa	Protospacer
******.******* ***********. *    *..

125. spacer 4.3|2458157|71|NC_015555|CRISPRCasFinder matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 11, identity: 0.845

gacgaagcagtaagcaaggtatatgaaatacgggacatttgcactaaaaaaataaaagaa	CRISPR spacer
gacgaagcagtaagcaaggtatatgaaatacgggacatttgcactaaaaaaataaaagaa	Protospacer
************************************************************

126. spacer 4.10|2458656|34|NC_015555|CRISPRCasFinder,PILER-CR,CRT matches to MG592390 (Vibrio phage 1.003.O._10N.286.48.A2, partial genome) position: , mismatch: 11, identity: 0.676

ttgcagttgtggctgttgctgctgcataaaatag	CRISPR spacer
ttgctgttgtggctgttgttgctgttgttgctgt	Protospacer
**** *************.*****.    . *.

127. spacer 5.43|2463296|37|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to MN693171 (Marine virus AFVG_25M555, complete genome) position: , mismatch: 11, identity: 0.703

gatatagtaatgcagtttcagttcatgttttacatac	CRISPR spacer
caatgggtaattcagtttcagttcatattttatctgg	Protospacer
 *   .***** **************.*****. *.

128. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012277 (Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-2, complete sequence) position: , mismatch: 11, identity: 0.686

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
atatatatagcatttttaatttgctcatcaccgcc	Protospacer
 .** ******************.****. ..  .

129. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014631 (Lactobacillus backii strain TMW 1.1988 plasmid L11988-7, complete sequence) position: , mismatch: 11, identity: 0.686

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
atatatatagcatttttaatttgctcatcaccgcc	Protospacer
 .** ******************.****. ..  .

130. spacer 5.50|2463759|35|NC_015555|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012289 (Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-1, complete sequence) position: , mismatch: 11, identity: 0.686

tcatttatagcatttttaatttgttcattttttgt	CRISPR spacer
atatatatagcatttttaatttgctcatcaccgcc	Protospacer
 .** ******************.****. ..  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19809 : 28678

Staphylococcus_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013786847.1\|19809_21465_+	biosynthetic-type acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.2e-66	32.8
WP_083815347.1\|21698_22769_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.2e-54	38.6
WP_013786849.1\|22777_23398_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-33	41.9
WP_013786850.1\|23412_24603_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.7e-110	51.2
WP_013786851.1\|24626_25097_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.5e-44	58.6
WP_013786852.1\|25140_26205_-	sporulation integral membrane protein YtvI	NA	NA	NA	NA
WP_013786854.1\|26604_27141_+	signal peptidase I	NA	NA	NA	NA
WP_013786855.1\|27406_28678_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	50.2

DBSCAN-SWA_2

150104 : 160227

Hokovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013786963.1\|150104_151118_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	8.7e-26	28.7
WP_013786964.1\|151141_152539_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_013786965.1\|152696_153515_+	pur operon repressor	A0A1X9I6E2	Streptococcus_phage	3.6e-06	29.3
WP_013786966.1\|153717_153999_+	septation protein SpoVG	NA	NA	NA	NA
WP_013786967.1\|154108_155482_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	6.2e-35	38.2
WP_013786968.1\|155484_156435_+	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	2.1e-45	35.8
WP_013786969.1\|156525_157209_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.9e-50	43.7
WP_013786970.1\|157210_158632_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	3.2e-18	29.6
WP_013786971.1\|158871_160227_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	6.6e-21	31.4

DBSCAN-SWA_3

743504 : 756075

Prochlorococcus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013787500.1\|743504_745130_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.2e-157	55.6
WP_013787501.1\|745391_746846_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.3e-102	42.4
WP_013787502.1\|746858_748397_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.4e-21	33.3
WP_013787503.1\|748771_750220_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.0e-45	31.5
WP_013787504.1\|750299_750791_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-26	45.9
WP_013787505.1\|750790_751498_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SPE1	Cyanophage	1.1e-40	42.0
WP_013787506.1\|751507_752905_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-61	34.7
WP_013787507.1\|752921_753932_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.8e-71	45.8
WP_013787508.1\|753928_754546_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-23	36.4
WP_013787509.1\|754548_756075_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.9e-69	48.0

DBSCAN-SWA_4

1306245 : 1315987

Wolbachia_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013788020.1\|1306245_1308075_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	6.9e-74	33.0
WP_013788021.1\|1308086_1309037_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_013788022.1\|1309079_1309334_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_013788023.1\|1309401_1310199_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_013788024.1\|1310195_1310660_+	ribonuclease HI	A0A0H3UZB5	Geobacillus_virus	5.3e-31	49.7
WP_013788025.1\|1310745_1311729_+	tyrosine recombinase XerC	S5M9V8	Brevibacillus_phage	2.1e-16	27.4
WP_013788026.1\|1311787_1312411_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.9e-15	54.2
WP_013788027.1\|1312435_1313722_-	hypothetical protein	NA	NA	NA	NA
WP_013788028.1\|1313726_1314617_-	stage V sporulation protein K	G3MAX6	Bacillus_virus	7.3e-53	46.6
WP_013788029.1\|1314691_1315987_-\|tRNA	asparagine--tRNA ligase	L7RCX2	Acanthamoeba_polyphaga_moumouvirus	4.6e-64	34.9

DBSCAN-SWA_5

1877331 : 1936569

Bacillus_virus(30.0%)

coat,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013786953.1\|1877331_1877772_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-21	37.5
WP_083815339.1\|1877844_1878522_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_013788561.1\|1878535_1879168_-	sugar transferase	NA	NA	NA	NA
WP_013788563.1\|1879773_1880664_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_013788564.1\|1880698_1881637_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_013788565.1\|1881907_1882474_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_013788566.1\|1882475_1883354_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_013788567.1\|1883464_1885972_-	hypothetical protein	NA	NA	NA	NA
WP_013788568.1\|1886158_1887175_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041592116.1\|1887241_1887988_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.6e-32	37.9
WP_013788570.1\|1887980_1888790_+	ABC transporter permease	G3M9Y4	Bacillus_virus	1.7e-16	23.9
WP_013788571.1\|1888876_1890514_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	7.6e-88	37.0
WP_013788572.1\|1890533_1891400_+	DMT family transporter	NA	NA	NA	NA
WP_013788573.1\|1891410_1892868_-	peptidase M4	NA	NA	NA	NA
WP_013788574.1\|1892949_1893363_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_013788575.1\|1893373_1894759_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_013788576.1\|1894793_1895651_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_013788577.1\|1895650_1897171_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_013788578.1\|1897199_1897733_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_013788579.1\|1897720_1898209_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_013788580.1\|1898231_1898456_-	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_013788581.1\|1898544_1899201_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_013788582.1\|1899445_1900048_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_013788583.1\|1900044_1902369_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.1e-177	44.8
WP_013788584.1\|1902439_1903300_-	ATP-binding protein	NA	NA	NA	NA
WP_013788585.1\|1903361_1904636_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-150	64.6
WP_013788586.1\|1904656_1905241_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.3e-50	52.6
WP_013788587.1\|1905245_1906544_-	trigger factor	NA	NA	NA	NA
WP_013788588.1\|1906665_1907577_-	ribonuclease Z	NA	NA	NA	NA
WP_013788589.1\|1907602_1908436_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	1.1e-26	31.0
WP_013788590.1\|1908553_1909570_-	hypothetical protein	NA	NA	NA	NA
WP_013788591.1\|1909727_1911086_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.5e-60	32.1
WP_013788592.1\|1911230_1911413_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_013788593.1\|1911415_1911676_+\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_013788594.1\|1911688_1912261_+	manganese catalase family protein	NA	NA	NA	NA
WP_013788595.1\|1912279_1914679_-	homocysteine methyltransferase	NA	NA	NA	NA
WP_013788596.1\|1914701_1915604_-	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_013788597.1\|1915902_1916832_+	DUF362 domain-containing protein	NA	NA	NA	NA
WP_013788598.1\|1916857_1917655_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013788599.1\|1917748_1919104_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_013788600.1\|1919168_1919666_-	HD domain-containing protein	NA	NA	NA	NA
WP_013788601.1\|1919796_1920294_+	nitroreductase family protein	A0A1V0E011	Clostridioides_phage	3.1e-21	34.5
WP_013788602.1\|1920413_1921640_+	peptidase T	NA	NA	NA	NA
WP_013788603.1\|1921666_1922440_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_013788604.1\|1924463_1925132_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_013788605.1\|1925131_1927471_-	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_013788606.1\|1927592_1928555_+	hypothetical protein	NA	NA	NA	NA
WP_013788607.1\|1928562_1929462_-	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_013788608.1\|1929523_1929796_-	hypothetical protein	NA	NA	NA	NA
WP_013788609.1\|1929868_1931614_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_013788610.1\|1931655_1931979_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_013787204.1\|1932339_1933713_+\|transposase	transposase	NA	NA	NA	NA
WP_013788611.1\|1933900_1934776_+	nitroreductase	NA	NA	NA	NA
WP_013788612.1\|1934937_1936569_-\|transposase	DDE transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2415872 : 2481865

Lactobacillus_phage(22.22%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013789026.1\|2415872_2417090_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.2e-47	30.9
WP_041592147.1\|2417379_2417577_+	hypothetical protein	NA	NA	NA	NA
WP_013789027.1\|2417543_2417861_+	hypothetical protein	NA	NA	NA	NA
WP_013789028.1\|2417915_2418122_+	hypothetical protein	NA	NA	NA	NA
WP_013789029.1\|2418140_2418413_+	hypothetical protein	NA	NA	NA	NA
WP_013789030.1\|2418447_2418867_+	TNT domain-containing protein	NA	NA	NA	NA
WP_013789031.1\|2418863_2419130_+	hypothetical protein	NA	NA	NA	NA
WP_013789032.1\|2419343_2419907_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_013789033.1\|2420010_2420193_+	hypothetical protein	NA	NA	NA	NA
WP_013789034.1\|2420228_2420663_+	RDD family protein	NA	NA	NA	NA
WP_013789036.1\|2420899_2421481_+	DUF986 family protein	NA	NA	NA	NA
WP_013786953.1\|2421461_2421902_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-21	37.5
WP_041592273.1\|2422097_2422382_-	co-chaperone GroES	NA	NA	NA	NA
WP_013789038.1\|2422419_2422995_-	glutaredoxin	NA	NA	NA	NA
WP_013789039.1\|2423175_2423364_+	small, acid-soluble spore protein, H family	NA	NA	NA	NA
WP_013789040.1\|2424097_2425075_-	deoxyribodipyrimidine photo-lyase	NA	NA	NA	NA
WP_013789041.1\|2425133_2425760_-	hypothetical protein	NA	NA	NA	NA
WP_013789042.1\|2426069_2428649_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_013789043.1\|2428712_2430353_-	hydroxylamine reductase	NA	NA	NA	NA
WP_013789044.1\|2430494_2431484_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_013789045.1\|2431626_2432064_+	DMT family transporter	NA	NA	NA	NA
WP_014757372.1\|2432104_2432275_-	cytochrome c551	NA	NA	NA	NA
WP_013789047.1\|2432433_2432640_-	hypothetical protein	NA	NA	NA	NA
WP_013789048.1\|2432686_2436949_-	2-hydroxyacyl-CoA dehydratase	NA	NA	NA	NA
WP_013789049.1\|2437071_2437743_-	hypothetical protein	NA	NA	NA	NA
WP_013789050.1\|2438254_2439328_+	hypothetical protein	NA	NA	NA	NA
WP_083815345.1\|2439275_2439410_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_013789051.1\|2439582_2439939_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013789052.1\|2440097_2440721_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_013789053.1\|2440727_2441207_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_013789054.1\|2441220_2441388_-	CxxH/CxxC protein	NA	NA	NA	NA
WP_013789055.1\|2441401_2442523_-\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	7.9e-12	30.0
WP_013789056.1\|2442602_2443853_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_013789057.1\|2443976_2444795_-	hypothetical protein	NA	NA	NA	NA
WP_013789058.1\|2444810_2446055_-	hypothetical protein	NA	NA	NA	NA
WP_013789059.1\|2446067_2446463_-	hypothetical protein	NA	NA	NA	NA
WP_013789060.1\|2446607_2448305_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	3.3e-38	34.6
WP_013789061.1\|2448294_2448990_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.2e-40	42.1
WP_013789062.1\|2448996_2449812_-	hypothetical protein	NA	NA	NA	NA
WP_013789063.1\|2449945_2451151_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.3e-24	51.7
WP_013789064.1\|2451332_2452304_+	DnaD domain protein	NA	NA	NA	NA
WP_013789065.1\|2452296_2453277_+	DNA replication protein DnaC	H7BWC4	unidentified_phage	1.5e-14	34.1
WP_013789066.1\|2453273_2454716_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_013789067.1\|2454855_2455467_+	sporulation membrane protein YtaF	NA	NA	NA	NA
WP_013786953.1\|2456871_2457312_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-21	37.5
WP_013789068.1\|2457496_2457676_-	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_013789069.1\|2457728_2457983_-	hypothetical protein	NA	NA	NA	NA
WP_013787204.1\|2458949_2460323_-\|transposase	transposase	NA	NA	NA	NA
WP_013789070.1\|2469952_2470708_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_013789071.1\|2470718_2470982_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_013789072.1\|2470983_2471976_-	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_013789073.1\|2471987_2472479_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_013789074.1\|2472497_2474714_-	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	4.1e-28	24.2
WP_013789075.1\|2474685_2475333_-	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_013789076.1\|2475339_2476356_-	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_013789077.1\|2476374_2477754_-	type I-B CRISPR-associated protein Cas8b1/Cst1	NA	NA	NA	NA
WP_013789078.1\|2478081_2479134_+	DUF1646 domain-containing protein	NA	NA	NA	NA
WP_013789079.1\|2479197_2479869_-	hypothetical protein	NA	NA	NA	NA
WP_013789080.1\|2479943_2480159_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_083815346.1\|2481562_2481865_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015555

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection