CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015152	Sphaerochaeta globosa str. Buddy, complete sequence	2 crisprs	cas3HD,casR,WYL,DEDDh,csa3,RT,DinG,cas2,cas1,cas9	0	17	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015152_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015152_1

2363731-2366539

TypeII

Consensus_repeat	Method
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CRISPRCasFinder
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CRT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	PILER-CR

42 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_015152_1

>merge|NC_015152|1|2363731-2366539|CRISPRCasFinder,CRT,PILER-CR
ATAAAAATTTGCCGCTGAATTTTGTTAAGATAGACCTACCCAGATGTCTGGAGGGTTATATACCCCGTTGGGGATGACCGCTGATTTTTGTTAAGATAGACCAGAAATGGCCGTGTGGAGATCAACAACATCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTTGCCGCACCGATTGACGCGAAGCACGCCAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATCCATAGTGGATGCCCTTCCTGTTATGCCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGAGCTTTCGGAGGCCAGGACAGCCCTCAAGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATTCCGGCCTACCAGCCGCTCTTACTTGCGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCCACGTCGAAGGGATTGCCCGTCTCGGTGGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCTTCCTTGTCTGCCATCAGTCGTGTGGCTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCAATCCTACCTCCGATTATACACGATTGATTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCTATAGAACGTTGGATGCTGAGTTTGGTTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTACTTTCGCTATAGTCGGGCTACCGCCTAGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCACAAATCCCATATCCAACGCCAGCAGACGTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCATGTTCGACGCTGACGAGGAAGGAAACTCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGCCGATGTCGTGTATACGGACAAGGAAAATGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGACAGCCCCCCTGCATCCCATTGGCTCTTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCTTGCTGACTTCCCTGCTCTCTCCCTTGTCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGATTGTATCAAATCTCTCAGATACGGATGAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTGAGAGCGTCAAACACTTGTGTAGGATACTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATCTCAAGCCGGTGGCAGACAAGATCGACGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGTCAACACCTTTCATTCGCAAGTACAAATCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATCACGGGAGGTATAACAATGATTAGTTATGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTGTTAATAGGTACTGAAAACTTCGAAATTCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCATATGAGAGAGATTGGCATTGACCGCCCAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCCAACGAATGGATCATCAATCGGGTGTTCCGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTCCTGTACTGGCAATAGACTCATGATCCACGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCACCGAGTCTAAAGCTGTTGTTCCTGTACCTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGAAGGGAGTGCTGTAGATGAAAGATATGTTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGGAAGCATGTACTTGACCCAGTTCGCCGTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTGCATTTAAACTTTTAATCAAACCATATACGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTCCATTGCTTGCGAGGAAGTGTCACCGTATGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGCAAGGGAAGAGACATACAAAGCTAATGAGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTTTTCTGTTTATTTTACCGTAGATAAAACAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCAGCCTTTGTGCATATTCATACATGAGTTCAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTGCAATGTATTGTTTCATGCAATCCTTCCTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTTTTTTAACGGTATTACAGCGCGTGATTTCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATATTGAGGATCTCGTATCGAGGGCATTGCGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCACAAGATAGAACAGAAGGGCAAGGAAGCCAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCTCTTGCAATATTCACTCGTCACTTCGCCTAGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGAGCACCTTGTCTATATGCTCCACCAGCTTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCGAGGATGAGGTTGTACTGGAGTCTGTCTATGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCAATGACACGTTCACGGCATGGAGGCAACTGGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACCATGTGATGGTCGCGGCTCCGGCTCTTGAGTGTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC

>NC_015152|1|1|2363731-2366539|CRISPRCasFinder
ATAAAAATTTGCCGCTGAATTTTGTTAAGATAGACC	TACCCAGATGTCTGGAGGGTTATATACCCC
GTTGGGGATGACCGCTGATTTTTGTTAAGATAGACC	AGAAATGGCCGTGTGGAGATCAACAACATC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTGCCGCACCGATTGACGCGAAGCACGCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCCATAGTGGATGCCCTTCCTGTTATGCC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGCTTTCGGAGGCCAGGACAGCCCTCAAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATTCCGGCCTACCAGCCGCTCTTACTTGCG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CCACGTCGAAGGGATTGCCCGTCTCGGTGG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTTCCTTGTCTGCCATCAGTCGTGTGGCTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AATCCTACCTCCGATTATACACGATTGATT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTATAGAACGTTGGATGCTGAGTTTGGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TACTTTCGCTATAGTCGGGCTACCGCCTAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAATCCCATATCCAACGCCAGCAGACGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATGTTCGACGCTGACGAGGAAGGAAACTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCCGATGTCGTGTATACGGACAAGGAAAAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GACAGCCCCCCTGCATCCCATTGGCTCTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTTGCTGACTTCCCTGCTCTCTCCCTTGTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GATTGTATCAAATCTCTCAGATACGGATGA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGAGAGCGTCAAACACTTGTGTAGGATACT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCTCAAGCCGGTGGCAGACAAGATCGACG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GTCAACACCTTTCATTCGCAAGTACAAATC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCACGGGAGGTATAACAATGATTAGTTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGTTAATAGGTACTGAAAACTTCGAAATTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATATGAGAGAGATTGGCATTGACCGCCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CAACGAATGGATCATCAATCGGGTGTTCCG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCTGTACTGGCAATAGACTCATGATCCAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACCGAGTCTAAAGCTGTTGTTCCTGTACCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAAGGGAGTGCTGTAGATGAAAGATATGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GGAAGCATGTACTTGACCCAGTTCGCCGTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCATTTAAACTTTTAATCAAACCATATAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCATTGCTTGCGAGGAAGTGTCACCGTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCAAGGGAAGAGACATACAAAGCTAATGAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTCTGTTTATTTTACCGTAGATAAAACA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AGCCTTTGTGCATATTCATACATGAGTTCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCAATGTATTGTTTCATGCAATCCTTCCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTTTAACGGTATTACAGCGCGTGATTTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATATTGAGGATCTCGTATCGAGGGCATTGC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAGATAGAACAGAAGGGCAAGGAAGCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCTTGCAATATTCACTCGTCACTTCGCCTA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGCACCTTGTCTATATGCTCCACCAGCTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGGATGAGGTTGTACTGGAGTCTGTCTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AATGACACGTTCACGGCATGGAGGCAACTG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATGTGATGGTCGCGGCTCCGGCTCTTGAGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC

>NC_015152|1|1|2363731-2366539|CRT
ATAAAAATTTGCCGCTGAATTTTGTTAAGATAGACC	TACCCAGATGTCTGGAGGGTTATATACCCC
GTTGGGGATGACCGCTGATTTTTGTTAAGATAGACC	AGAAATGGCCGTGTGGAGATCAACAACATC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTGCCGCACCGATTGACGCGAAGCACGCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCCATAGTGGATGCCCTTCCTGTTATGCC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGCTTTCGGAGGCCAGGACAGCCCTCAAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATTCCGGCCTACCAGCCGCTCTTACTTGCG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CCACGTCGAAGGGATTGCCCGTCTCGGTGG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTTCCTTGTCTGCCATCAGTCGTGTGGCTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AATCCTACCTCCGATTATACACGATTGATT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTATAGAACGTTGGATGCTGAGTTTGGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TACTTTCGCTATAGTCGGGCTACCGCCTAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAATCCCATATCCAACGCCAGCAGACGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATGTTCGACGCTGACGAGGAAGGAAACTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCCGATGTCGTGTATACGGACAAGGAAAAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GACAGCCCCCCTGCATCCCATTGGCTCTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTTGCTGACTTCCCTGCTCTCTCCCTTGTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GATTGTATCAAATCTCTCAGATACGGATGA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGAGAGCGTCAAACACTTGTGTAGGATACT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCTCAAGCCGGTGGCAGACAAGATCGACG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GTCAACACCTTTCATTCGCAAGTACAAATC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCACGGGAGGTATAACAATGATTAGTTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGTTAATAGGTACTGAAAACTTCGAAATTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATATGAGAGAGATTGGCATTGACCGCCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CAACGAATGGATCATCAATCGGGTGTTCCG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCTGTACTGGCAATAGACTCATGATCCAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACCGAGTCTAAAGCTGTTGTTCCTGTACCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAAGGGAGTGCTGTAGATGAAAGATATGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GGAAGCATGTACTTGACCCAGTTCGCCGTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCATTTAAACTTTTAATCAAACCATATAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCATTGCTTGCGAGGAAGTGTCACCGTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCAAGGGAAGAGACATACAAAGCTAATGAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTCTGTTTATTTTACCGTAGATAAAACA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AGCCTTTGTGCATATTCATACATGAGTTCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCAATGTATTGTTTCATGCAATCCTTCCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTTTAACGGTATTACAGCGCGTGATTTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATATTGAGGATCTCGTATCGAGGGCATTGC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAGATAGAACAGAAGGGCAAGGAAGCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCTTGCAATATTCACTCGTCACTTCGCCTA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGCACCTTGTCTATATGCTCCACCAGCTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGGATGAGGTTGTACTGGAGTCTGTCTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AATGACACGTTCACGGCATGGAGGCAACTG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATGTGATGGTCGCGGCTCCGGCTCTTGAGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC

>NC_015152|1|1|2364325-2366539|PILER-CR
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTATAGAACGTTGGATGCTGAGTTTGGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TACTTTCGCTATAGTCGGGCTACCGCCTAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAATCCCATATCCAACGCCAGCAGACGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATGTTCGACGCTGACGAGGAAGGAAACTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCCGATGTCGTGTATACGGACAAGGAAAAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GACAGCCCCCCTGCATCCCATTGGCTCTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CTTGCTGACTTCCCTGCTCTCTCCCTTGTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GATTGTATCAAATCTCTCAGATACGGATGA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGAGAGCGTCAAACACTTGTGTAGGATACT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCTCAAGCCGGTGGCAGACAAGATCGACG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GTCAACACCTTTCATTCGCAAGTACAAATC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATCACGGGAGGTATAACAATGATTAGTTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGTTAATAGGTACTGAAAACTTCGAAATTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CATATGAGAGAGATTGGCATTGACCGCCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	CAACGAATGGATCATCAATCGGGTGTTCCG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCTGTACTGGCAATAGACTCATGATCCAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACCGAGTCTAAAGCTGTTGTTCCTGTACCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAAGGGAGTGCTGTAGATGAAAGATATGTTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GGAAGCATGTACTTGACCCAGTTCGCCGTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCATTTAAACTTTTAATCAAACCATATAC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCCATTGCTTGCGAGGAAGTGTCACCGTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GCAAGGGAAGAGACATACAAAGCTAATGAG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTCTGTTTATTTTACCGTAGATAAAACA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AGCCTTTGTGCATATTCATACATGAGTTCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TGCAATGTATTGTTTCATGCAATCCTTCCT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TTTTTTAACGGTATTACAGCGCGTGATTTC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATATTGAGGATCTCGTATCGAGGGCATTGC
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ACAAGATAGAACAGAAGGGCAAGGAAGCCA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	TCTTGCAATATTCACTCGTCACTTCGCCTA
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGCACCTTGTCTATATGCTCCACCAGCTT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	GAGGATGAGGTTGTACTGGAGTCTGTCTAT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	AATGACACGTTCACGGCATGGAGGCAACTG
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC	ATGTGATGGTCGCGGCTCCGGCTCTTGAGT
GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015152.1\|WP_013607846.1\|2362367_2363651_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183851
NC_015152.1\|WP_013607840.1\|2356072_2357395_+\|platelet-activating-factor-acetylhydrolase-plasma/isoform-II	unknown	unknown	gnl\|CDD\|335313
NC_015152.1\|WP_172634198.1\|2366751_2367057_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_015152.1\|WP_013607841.1\|2357576_2358953_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NC_015152.1\|WP_081454646.1\|2355479_2356058_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015152.1\|WP_049787873.1\|2360169_2360829_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NC_015152.1\|WP_013607838.1\|2353919_2355377_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NC_015152.1\|WP_013607854.1\|2375070_2375967_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NC_015152.1\|WP_013607855.1\|2375976_2376858_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NC_015152.1\|WP_013607850.1\|2371713_2372496_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_015152.1\|WP_172634199.1\|2372589_2373510_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015152.1\|WP_013607845.1\|2361827_2362142_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_015152.1\|WP_013607844.1\|2360803_2361724_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|238626
NC_015152.1\|WP_013607853.1\|2374304_2375078_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NC_015152.1\|WP_013607856.1\|2376918_2378103_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380570
NC_015152.1\|WP_013607849.1\|2367951_2371491_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NC_015152.1\|WP_155816099.1\|2352551_2353913_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NC_015152.1\|WP_013607848.1\|2367061_2367964_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_015152.1\|WP_013607842.1\|2359003_2360137_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NC_015152.1\|WP_013607852.1\|2373573_2374302_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487

Protein	Function_ID	Function_description	E-value
NC_015152.1\|WP_013607846.1\|2362367_2363651_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|183851	PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.	0
NC_015152.1\|WP_013607840.1\|2356072_2357395_+\|platelet-activating-factor-acetylhydrolase-plasma/isoform-II	gnl\|CDD\|335313	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II. Platelet-activating factor acetylhydrolase (PAF-AH) is a subfamily of phospholipases A2, responsible for inactivation of platelet-activating factor through cleavage of an acetyl group. Three known PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose catalytic beta and gamma subunits are aligned in pfam02266, the extracellular, plasma PAF-AH (pPAF-AH), and the intracellular PAF-AH isoform II (PAF-AH II). This family aligns pPAF-AH and PAF-AH II, whose similarity was previously noted.	1.31357e-22
NC_015152.1\|WP_172634198.1\|2366751_2367057_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.2881e-12
NC_015152.1\|WP_013607841.1\|2357576_2358953_+\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	3.28294e-85
NC_015152.1\|WP_081454646.1\|2355479_2356058_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.000393853
NC_015152.1\|WP_049787873.1\|2360169_2360829_+\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.3634e-26
NC_015152.1\|WP_013607838.1\|2353919_2355377_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	5.83297e-95
NC_015152.1\|WP_013607854.1\|2375070_2375967_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.03869e-62
NC_015152.1\|WP_013607855.1\|2375976_2376858_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.50584e-57
NC_015152.1\|WP_013607850.1\|2371713_2372496_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.23133e-70
NC_015152.1\|WP_172634199.1\|2372589_2373510_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.39841e-20
NC_015152.1\|WP_013607845.1\|2361827_2362142_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	5.04836e-38
NC_015152.1\|WP_013607844.1\|2360803_2361724_-\|membrane-dipeptidase	gnl\|CDD\|238626	cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.	1.89826e-80
NC_015152.1\|WP_013607853.1\|2374304_2375078_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.07469e-103
NC_015152.1\|WP_013607856.1\|2376918_2378103_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380570	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	1.91741e-99
NC_015152.1\|WP_013607849.1\|2367951_2371491_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	5.34259e-53
NC_015152.1\|WP_155816099.1\|2352551_2353913_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	3.08452e-118
NC_015152.1\|WP_013607848.1\|2367061_2367964_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.65192e-77
NC_015152.1\|WP_013607842.1\|2359003_2360137_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NC_015152.1\|WP_013607852.1\|2373573_2374302_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.03147e-113

>NC_015152.1|WP_013607846.1|2362367_2363651_+|tryptophan-synthase-subunit-beta
MQNALTKEINTTNLPTKEGRFGEFGGSYIPPQLQAVMDEITQAYEQIVQDPAFLNELSDLQKHYVGRPSPVYHAKRLSDAVGGAQIYLKREDLNHTGAHKINHCIGEVLLAKKLGKKKVIAETGAGQHGVALATAAALMGLECDIYMGAVDIKKEAPNVSRMKILGATVVEVTRGTKTLKDAVDAAFEAYLQDPVTQIYCIGSVVGPHPFPMMVRDFQSVVGIEARKQIQEMTGSLPDAIVACVGGGSNAMGIFSAFLDDKLVKLYGVEPAGRGLDTPDHAATITKGSVGILHGFKSLLLQDEKGEALPVYSIASGLDYPGVGPQHSYLHSIGRVIYDSATDREAVEAFYGLSRMEGIIPALESSHAVAHAIKLAQKMSKDEVILVNLSGRGDKDIDFVMEHYPLVEYEPQEGGDGFEEFLAHIKQK
>NC_015152.1|WP_013607845.1|2361827_2362142_+|thioredoxin
MIKHVNKSTYEAEVLKSTVPVVVDFWAAWCGPCRMQGTILEQLDKEITADQAKIVKVNVDEEGELAGTFGVQSIPTLLFYKDGKVVNKAVGVRDAAALRKSLGI
>NC_015152.1|WP_013607844.1|2360803_2361724_-|membrane-dipeptidase
MYPVIDLHCDTIYELEYQKEGSLAENKGHTSLRWMDKAGKVTTCFALFVDTKQCVSAWHQAQALHERFLREMRLNQDRIIPVSQAVELATSFKHGAILSCEELQILEGKLDRIQTLSSWGVRLATLTWNYENDLGFPHHQRGGLKSFGFAAVEALEQNNILVDVSHLNDDGFFDVASVARKPLIASHSNCRYITNHSRNLSDRMIRTIAESGGVIGLNFCPSFLSEDWHSSSLEAMVRHALHLKKVGGSSVLALGTDYDGITGELAIPHYDSLPLLWQALEHSGFTASELEGLWSENALRVLCGDA
>NC_015152.1|WP_049787873.1|2360169_2360829_+|DNA-alkylation-repair-protein
MAEPSYRAFSEKLKVSDRPIYGVRTPMIQKLVKELFKTEGIKALDDFFTYTDPSYEEIQISYSLFGLLKLEGQSAFSYLNKLRQFNESWATNDNLSGCLSHLTAEPSLYPYLLSLLKESNPYDQRLGIVALMYYYLDDSHINETLRELATVTNPHYYVVMALGWAYASAFCKNREETLPYLQTGRLQEPVRRKAIQKCVESLLVSAEDKVLLKRLRKGL
>NC_015152.1|WP_013607842.1|2359003_2360137_+|glycerate-kinase
MKNILLIPDSFKGTMSSEQICSIMDRAIKQHYPDAQVTSIPVADGGEGSVDAFLQALGGERRSLTVQGPYAFPMESFYGVIKKTTAVVEMAACAGLPLVGDELHPDLTTTYGVGELILDAAKTGCTTIIVGLGGSATNDGGCGAAAACGVVFRDKDGKAFVPTGGTLGKVESIDTSSLDPALKNVTITTMCDIDNPYYGPTGAAHIFGPQKGATPEMVKILDANMQKLAKVIERDCKIDVQAIAGSGAAGGMGGGMAAFFGSQLQMGIETVLETVNFDKLLTKADLVLTGEGKIDGQSLRGKVVIGVARRAKKVNVPVVAIVGDIGDDVEGAYNEGVSAIFSINRLAIDFKAAKPRAPHDMEKTMDNLMRFIKRMGL
>NC_015152.1|WP_013607841.1|2357576_2358953_+|GntP-family-permease
MSGIALIITFVIAIAIMIVAISRWNVHPFLALMGVSLLLAIFIGLPLKDIPGVIGSGFSGIFSSIGIVIILGALIGTILEKTGAALKLAEMVVRLVGRKHPQLAMEIMGWVVSIPVFCDSGFVILDPIRKALRKKTQFSSVAMTVALSAGLYTSHVLIPPTPGPIAAAGTLGIGDNLFMVIVIGTLCSIPSLVVAYFYANYIGKKIKSGEDLGEEEEGVDYDTLLKSFGDLPNGFLSLAPILMPILAMALGSLSAALKWKGALASLFSFTGTPIIALTIGLLFGILLLIQRSEMKYFNTMTTDTLKVVGPILFITAAGGVLGKVIASAGFVAFMQEHASVLAAVGIFFPFLISAILKTAQGSSTVAITTTAGIMGSIAESSSMMTALGLASPMAAVLTVMAIGAGSMTVSHANDSYFWVVTNFGKLKPEDGYKTQTMVTLLQGLASIIFIWLFSLILL
>NC_015152.1|WP_013607840.1|2356072_2357395_+|platelet-activating-factor-acetylhydrolase-plasma/isoform-II
MMAIGIFIGLCTVEVALFARFAKKKGFDRRESSFTRIILLVVFLILCVAGIIDWGMKWYALTLLLGIKALIGIVSLLRKKAPIDSIKSKAVRRLIGSIALVVLVMIPPLVFPGYAQLKPTGSHSVGTTVFTWTDASRQDGFTVEEDRRKVTVQFWYPLAQGGDNTGALEGRFPLIVFSHGAFGFRMSNHSTFMELASNGYIVASIDHTHQAFMTKEADGTTILGDRGFINTAMQVENGTIQGEELYHIQEEWMALRSADMAFVLDQIRQQVASPTSKDLFHQIDSERIGVLGHSMGGATAAWIGRQDDAIDAVIVLDGTLMGEIIGFENGKEVLTNVPYPKPILNLFNEKHYQDGKAMGLEYANMLMHANASKSFQLVVEGSGHLNFTDLPLVSPFLAGLLGTGTVDPFSCMETTNAAVLQFMDYYLKDKGNSIPAFRML
>NC_015152.1|WP_081454646.1|2355479_2356058_+|TetR/AcrR-family-transcriptional-regulator
MDEVQTMAPKQKITKEMILEATFHITREHGYENVNARSLASMLGCSTQPIFSRFASMEELKKVFHAYAGKYFDRYAAEAMQGGDSFRKLGECYINFARNESNLFRLLFMSEVMDLHGFADMYDDPENLEVAQTLSSTMGISFDSAKRFYMKMFIFTHGIAAMLASKFVHLEPGEAETMLGEAQRAFAAQHTT
>NC_015152.1|WP_013607838.1|2353919_2355377_+|TrkH-family-potassium-uptake-protein
MINWKLDLRLLAFIELFIGFLMLIPTALSFRYQEADAMRGFLIAYLGIAIFCSITLILIGKPKTKTMYARDGYLVVTLTWVIATAFSAIPLAASGAYVDYSSAYFEIMSGFTTTGATVLPEIESLPKSILFWRSQTNWLGGMGIVVLFVALLPALGVSGSLLVGAESVGPTKDKLTPKIKNTAIILWSIYIGFSFLQTILLVFGGLNWYDAITVTFSTMAAAGFCVKNSSIGAFGSAYVDIVVTFFMLVSGANFALYYKALSGKISSVFKDGELRVYLGIWAFVSVFAALQLSFSSTYGSFFESLRYSAFQTASILTTTGFATANYVHWPAFSQALLFLLFFIGGSAGSAGGGVKVIRIVALIKMGRAQLKQRIHPRGVFQVRVGQTTFREDLLVSIATFFGVYILTGVVGAVVISLSGADLITSFSASFLCLGNIGIGFGEVGPTGNFAFLPSWIKWFCSFLMLVGRLELFTVYVLFSKHFWKH
>NC_015152.1|WP_155816099.1|2352551_2353913_+|Trk-system-potassium-transporter-TrkA
MDTSKKVIILGAGRRGLGLAKQLIVDGKDVVIIDSSHERIESAVSKQDCLGILGNGTDIAKLMEADVEHAEAFIAVTNSDEINLVSCGLVSSTYPHVKTVAAIRSLIYTGVDGLKEGLLGIDYIVNPNAETAKSIYNTIEQGVNGNVLGFTNSKLLLYNFYIEPFSSYVGSTVMEMRNKLQAEFVIASINRRGLVIVPSGNTTIQAQDTLSIVANSEEVTDILKTVGQLQKRPSNMVLVGASKITRALLNRMSPAMRSKVAVVDQDAEVCRAFSERFREILVIKADITDEDIMAEEQLGSYDLLVALTDNDELNIITASYAKRIGVERSIALIKQNNNYTRMASYLDIDVVISTTDTTVESLLRYLRGTNVTSIHSLFNGQLEVYEFVIHAENMVCNKQLKDINMRKKAIVAGVTDHQGKSIIPTGLTTLKEGDTALVAVMRDSSDFIQKLFG
>NC_015152.1|WP_172634198.1|2366751_2367057_-|CRISPR-associated-endonuclease-Cas2
MWVFVGFDVPTLTKLDVKRANRFRNDLLDMGFSRFQLSFYTYYVPSKQRAETLAKQVEHKVPPNGKVSIFFITDRQFGMTRTFYAGQQVENECPEQGLLFE
>NC_015152.1|WP_013607848.1|2367061_2367964_-|type-II-CRISPR-associated-endonuclease-Cas1
MWRVIDLGGTGYYLHTVHNKLIVEKDGEESLIPFDDIHSIICHGIGFRYSDKFFKSCLHHKVPVTFCDEKHIPLGMLLPMLQHKDTSQRMDIQLKASLPRRKQAWQQIITEKLKNQRDFLQHLQIPGVKRLDVLSQTVLSGDSSNNEAQGARVYFESIYGTSFFRSDEDNAINGKLDYGYSILRSAVARAVVDTGLLPSCGVFHSSRINPFCLVDDLMEPFRPMVDSLVLAMCSKYGVIEDLESREKKELMRITAREVVFEEQDVEFSYALRLYVLSYLSFLSRNRDAIQFPKYRYAWAV
>NC_015152.1|WP_013607849.1|2367951_2371491_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MSKKVSRRYEEQAQEICQRLGSRPYSIGLDLGVGSIGVAVAAYDPIKKQPSDLVFVSSRIFIPSTGAAERRQKRGQRNSLRHRANRLKFLWKLLAERNLMLSYSEQDVPDPARLRFEDAVVRANPYELRLKGLNEQLTLSELGYALYHIANHRGSSSVRTFLDEEKSSDDKKLEEQQAMTEQLAKEKGISTFIEVLTAFNTNGLIGYRNSESVKSKGVPVPTRDIISNEIDVLLQTQKQFYQEILSDEYCDRIVSAILFENEKIVPEAGCCPYFPDEKKLPRCHFLNEERRLWEAINNARIKMPMQEGAAKRYQSASFSDEQRHILFHIARSGTDITPKLVQKEFPALKTSIIVLQGKEKAIQKIAGFRFRRLEEKSFWKRLSEEQKDDFFSAWTNTPDDKRLSKYLMKHLLLTENEVVDALKTVSLIGDYGPIGKTATQLLMKHLEDGLTYTEALERGMETGEFQELSVWEQQSLLPYYGQILTGSTQALMGKYWHSAFKEKRDSEGFFKPNTNSDEEKYGRIANPVVHQTLNELRKLMNELITILGAKPQEITVELARELKVGAEKREDIIKQQTKQEKEAVLAYSKYCEPNNLDKRYIERFRLLEDQAFVCPYCLEHISVADIAAGRADVDHIFPRDDTADNSYGNKVVAHRQCNDIKGKRTPYAAFSNTSAWGPIMHYLDETPGMWRKRRKFETNEEEYAKYLQSKGFVSRFESDNSYIAKAAKEYLRCLFNPNNVTAVGSLKGMETSILRKAWNLQGIDDLLGSRHWSKDADTSPTMRKNRDDNRHHGLDAIVALYCSRSLVQMINTMSEQGKRAVEIEAMIPIPGYASEPNLSFEAQRELFRKKILEFMDLHAFVSMKTDNDANGALLKDTVYSILGADTQGEDLVFVVKKKIKDIGVKIGDYEEVASAIRGRITDKQPKWYPMEMKDKIEQLQSKNEAALQKYKESLVQAAAVLEESNRKLIESGKKPIQLSEKTISKKALELVGGYYYLISNNKRTKTFVVKEPSNEVKGFAFDTGSNLCLDFYHDAQGKLCGEIIRKIQAMNPSYKPAYMKQGYSLYVRLYQGDVCELRASDLTEAESNLAKTTHVRLPNAKPGRTFVIIITFTEMGSGYQIYFSNLAKSKKGQDTSFTLTTIKNYDVRKVQLSSAGLVRYVSPLLVDKIEKDEVALCGE
>NC_015152.1|WP_013607850.1|2371713_2372496_-|SDR-family-oxidoreductase
MKRFADNVLVVTGSAGDIGRAVALRFAREGAILALFDVRPSDATQAAVEAIGGEARSYRCDVTDAQSVQTAVNQVVSDFGKIDLLFNNAGYQGLFKKTHAYPQDDFFKVININLVGAFHVLRSVSEVMVKQGSGCIVNTASMAGVGVPPNMIAYGSSKAAIISMTKIAAKDLAPYGIRVNAISPAFMGPGVMWDRQVALQAQAGSPYYDSDPLVVEHQMVNEIPMHRLGDIKEIPGVVAFLMSDDASYITGENVRIAGGV
>NC_015152.1|WP_172634199.1|2372589_2373510_-|EamA-family-transporter
MKQSSDTSNNSALILAFLTVMLWSTGFVFTRIAVRDIGPFPLGLLRYGSAAVILVVIGLVKRIGLPTLKDVPLFLVLGALGFFFYQIFFNVAMTTITAATASVVTATVPVLTAFFASLLFREKLGNLGWIAVCLEFAGILVLTLWQREVSIGWGLAWMIIAALCFAGYNLIQRFATKRYTPVQSTVYTIVASAFMFLLFLPQAIEEVRTAPVQSLLAVLFMGIFPSAIGFLLWTKALSIAKQIGDVTNFMFVTPLLSTLLEIILIGDIPDTGTIIGGLMILFGVALFNNRARLVPRQHAILRKEGV
>NC_015152.1|WP_013607852.1|2373573_2374302_-|ABC-transporter-ATP-binding-protein
MALLEIHDVTVAYGMVEALHAITMQIQEGTITSIIGSNGAGKTTIINAISAMVPYKGSIQFDGKQLPLKSNQVVRKGIVQVPEGRKVFAGLTVEENLLVGAYTITDRKQLPQLLARQYALFPRLKERKDQDAGTLSGGEQQMLVICRALMGGPRLLMLDEPSLGLAPIIVREVFETIKQIKESGTTILLVEQNANKSLCMSDYGYVIENGRVILEGKGLALLSDSKVAEAYLGGKRKPMDCK
>NC_015152.1|WP_013607853.1|2374304_2375078_-|ABC-transporter-ATP-binding-protein
MAELVLKCTDVCMSFGGVKAVDTFSMSLNPGEIRGIIGPNGAGKTTIFNVLSRIYQQDAGSILFKGQCIDAKDQVTVARMGLARTFQNIRLFSGLSVLENVKVSLDYAGKYSFFEAMFLLPRRFKQEKLTTERASKCLEVLNLEQYASLRPANLAYGLQRRVEIARALVCEPSVLLLDEPAAGLNPEEVFELIDFIQQIKGLYPQIAILVIEHRMDLIMNLCQYLYVQNFGTTIAEGTPTEIQTNEAVLSAYLGEEE
>NC_015152.1|WP_013607854.1|2375070_2375967_-|branched-chain-amino-acid-ABC-transporter-permease
MSSYQLGLIMNSCISIIGVTGVFAITSLAGMFSLGQAAYLAIGSYVTFILARMFNLPIFVTSVAGIGLSALCAYVISVPTLKLRKDYFALITMGFGQMITATIVLLERYTNGSIGYSRIPKVNHLVWVILGITALVVFCVRNLKYSRFGRMCIALKTDEIAAKSFGIDVYRLKLRMYVLASAIAGIAGILYGLKNRVILPDSFGWNLSAEMQIFLFFGGTNSITGAVFAGALLKLLPELFRTVTLFGQSLQEYRTIIYCVLILLIINFRPSGVFGEYELSLRAIKRFVIRNRKESNNG
>NC_015152.1|WP_013607855.1|2375976_2376858_-|branched-chain-amino-acid-ABC-transporter-permease
MVAQLLINGISLGAVYALIAVGFAVVFSVLKFSNFAHGGMISACAYIGFFFQRSFDPAPSILVTILFTGLCGMGIALLLDLIAYRSIRKNKSPNIYYFLSSLTISIIIEQILNIGYSKNPYAYPNIFSSNFFMIGSLRVSTMDTMIMAISLLILMLMILVITKTKMGLAIRAVAINADTSRLMGINSGVVVVMVFIIAGFLAGVSGVLLGAKYSVYPDLGQTMMIKGFIASVIGGLGSLGGAIAAAVLLGVLEIFWTYFFGAFSAPVMLFILMLLFLFIRPQGIAGKFAKEKV
>NC_015152.1|WP_013607856.1|2376918_2378103_-|ABC-transporter-substrate-binding-protein
MKKLIVFMLLLGLTFSVFAGGATEQSSLKGEGPIKIGSIQDLSGGASTAGQPNAWGAEYAVKVINEKGGINGRMLEITTMDCKNDAAEGVMAYRKLVDEVGVAAIIGPPLSNPAAAWVELSEEDSIPIVGHFMDEVCTTNPDTGKPYPYMFLAEPSSAIQSYCMAEYALTKLGAKTAATLYNPGNAFAKSQAAPFVQYMNANGGKVVSEQTFSWTDKDYSAQAIKIVAAKPDVVFLCDYLPQNVTSYDALRDAGFKGAIIGANTLSLPFATMVKNKVNDVYFLQNYDMLNSNVGNINELVTKHMKETGTAAPAANVGFGWDAVQVLAQAMRMAKDPTDGKEVADLLRKTDNVMLSSGSTITIDPATHRPSNMGMYIADYDEKLSLRIVDFIKVN

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Crispr_ID: NC_015152_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015152_2

2892376-2892525

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
GTTTTCCCCGCTCACGCGGGGGTGTTTC	PILER-CR
GTTTTCCCCGCTCACGCGGGGGTGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015152_2

>merge|NC_015152|2|2892376-2892525|PILER-CR,CRISPRCasFinder
GTTTTCCCCGCTCACGCGGGGGTGTTTCGAAAAGATCGTGTTTCTGTTCCAAGTATTGGGAGTTTTCCCCGCTCACGCGGGGGTGTTTCTTATTGACTAGTACAATGGAGGGAAGTTAAAACGTTTTCCCCGCTCACGCGGGGGTGTTGT

>NC_015152|2|2|2892376-2892525|PILER-CR
GTTTTCCCCGCTCACGCGGGGGTGTTTC	GAAAAGATCGTGTTTCTGTTCCAAGTATTGGGA
GTTTTCCCCGCTCACGCGGGGGTGTTTC	TTATTGACTAGTACAATGGAGGGAAGTTAAAAC
GTTTTCCCCGCTCACGCGGGGGTGTTGT

>NC_015152|2|2|2892376-2892523|CRISPRCasFinder
GTTTTCCCCGCTCACGCGGGGGTGTT	TCGAAAAGATCGTGTTTCTGTTCCAAGTATTGGGA
GTTTTCCCCGCTCACGCGGGGGTGTT	TCTTATTGACTAGTACAATGGAGGGAAGTTAAAAC
GTTTTCCCCGCTCACGCGGGGGTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015152.1\|WP_013608315.1\|2887054_2887405_+\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|181745
NC_015152.1\|WP_013608313.1\|2884750_2885815_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_015152.1\|WP_013608314.1\|2885877_2886891_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270264
NC_015152.1\|WP_081454678.1\|2881869_2882688_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_015152.1\|WP_013608325.1\|2900031_2900544_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NC_015152.1\|WP_013605953.1\|2889959_2891264_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_015152.1\|WP_013608320.1\|2895558_2896221_-\|Asp/Glu/hydantoin-racemase	unknown	unknown	gnl\|CDD\|226611
NC_015152.1\|WP_013608309.1\|2881033_2881873_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NC_015152.1\|WP_013608311.1\|2882782_2883811_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226202
NC_015152.1\|WP_155816125.1\|2900946_2901858_-\|hypothetical-protein	unknown	unknown	unknown
NC_015152.1\|WP_081454679.1\|2883929_2884736_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_015152.1\|WP_013608318.1\|2892606_2894601_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NC_015152.1\|WP_013608317.1\|2891367_2891943_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_015152.1\|WP_013608323.1\|2897741_2898746_-\|TRAP-transporter-substrate-binding-protein-DctP	unknown	unknown	gnl\|CDD\|270321
NC_015152.1\|WP_013608319.1\|2894836_2895514_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_015152.1\|WP_013608327.1\|2902290_2902737_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NC_015152.1\|WP_013608322.1\|2896617_2897724_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549
NC_015152.1\|WP_013608324.1\|2898766_2900035_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NC_015152.1\|WP_013608316.1\|2887413_2889804_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_015152.1\|WP_013608321.1\|2896217_2896565_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898

Protein	Function_ID	Function_description	E-value
NC_015152.1\|WP_013608315.1\|2887054_2887405_+\|DUF3147-family-protein	gnl\|CDD\|181745	PRK09272, PRK09272, hypothetical protein; Provisional.	3.62777e-30
NC_015152.1\|WP_013608313.1\|2884750_2885815_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.25915e-152
NC_015152.1\|WP_013608314.1\|2885877_2886891_-\|extracellular-solute-binding-protein	gnl\|CDD\|270264	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.76019e-114
NC_015152.1\|WP_081454678.1\|2881869_2882688_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.23901e-40
NC_015152.1\|WP_013608325.1\|2900031_2900544_-\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	7.74529e-19
NC_015152.1\|WP_013605953.1\|2889959_2891264_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	3.43838e-70
NC_015152.1\|WP_013608320.1\|2895558_2896221_-\|Asp/Glu/hydantoin-racemase	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	0.00921004
NC_015152.1\|WP_013608309.1\|2881033_2881873_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	3.9685e-69
NC_015152.1\|WP_013608311.1\|2882782_2883811_-\|hypothetical-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.4813e-06
NC_015152.1\|WP_081454679.1\|2883929_2884736_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.02646e-48
NC_015152.1\|WP_013608318.1\|2892606_2894601_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NC_015152.1\|WP_013608317.1\|2891367_2891943_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.34897e-20
NC_015152.1\|WP_013608323.1\|2897741_2898746_-\|TRAP-transporter-substrate-binding-protein-DctP	gnl\|CDD\|270321	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic-binding component of TRAP transport systems such as SiaP (a sialic acid binding virulence factor), TeaA (an ectoine binding protein), and an uncharacterized TM0322 from hyperthermophilic bacterium Thermotoga maritima. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.24752e-113
NC_015152.1\|WP_013608319.1\|2894836_2895514_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.94179e-42
NC_015152.1\|WP_013608327.1\|2902290_2902737_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.66135e-31
NC_015152.1\|WP_013608322.1\|2896617_2897724_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	5.0758e-130
NC_015152.1\|WP_013608324.1\|2898766_2900035_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	1.77579e-121
NC_015152.1\|WP_013608316.1\|2887413_2889804_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.4369e-106
NC_015152.1\|WP_013608321.1\|2896217_2896565_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.000184808

>NC_015152.1|WP_013608317.1|2891367_2891943_-|class-I-SAM-dependent-methyltransferase
MDYYDKHADSYISTTVSVDMSMQYSMFLPYLVEGSSILDAGCGSGRDSLEFLKRGYSVEAFDNSIAMVEHARNLTGLDVRRLSFQEMDYEGAFDGIWACASLLHVPNTELPSVFVLLHRALKPQGLLYCSFKDREADFSQEGRSFSCFTSDGFKSLLSELSLFELIELKNSQDMRVGREDERWLNLLLRKK
>NC_015152.1|WP_013605953.1|2889959_2891264_-|ISL3-family-transposase
MIDPHIQKLFSLGLGLEEPWRITSLEMVPSEKQPTLLELHIRIDFEEGSSFPCPGFDQGCKVHDTRERTWRHLNFFQYRCYITARVPRIITPDGKVRTVPVPWARSGSGFTLMMEGVILTLVKHMPVRTVAREIGEHDTKLWRLIDYHVGEALKDQDFSDVSAIGVDEYSHKGHNYITVFLSHPDVVTDEAGRRRQAGKARVLFVTEGKDKDAVKRFLERFKEKDGKPGQVKVATSDMIHGYRSVLGESFPEAVVTVDKFHVVKNCSDAVDNTRKREMRSKNAAKTKDLKETRYIWLKNPDNLTDRQRERLGQLLQVEYLDTVQAYSCRLELQDFYETHKAYDEDMVSDFERLAIRFANSAVMEIRKFAQCLTRNAVEILNYFQTLRTNAILEGFNSKISIIKSRARGFRNMRNFMNMIYFVCGELSLPLQPIM
>NC_015152.1|WP_013608316.1|2887413_2889804_-|EAL-domain-containing-protein
MLSTSLFAMLFITVCIVSLVSGILVVQNDRKSAVHQAFFALVVSLILWTLGLTMSTIASSESIAQWGYRISAFGWGNLYAILLLFILRLTNRPYRNYYLLFIPTVLMILVFGLPLGLYTYDLKFTRFGYALSTVDTFWDYIFYAYYIGYTIASVYLLFSWKTTREQKQRKQILYSLVIAFLVGSVTDVLLPALGFELPQLGPIILVVPIVLFSQALRSRNPVVVGLDSNSRYTITFIGVALYVLLSVVQVRLAVDASLLGLFNLQESTFRGIITQMQMFISIYLVLRAKRTGVIAALLVNGANLVSSLLFLLRTNSAAPIPGIISYIGVLLLVYLIMEYEQRSEWYISHMDSQRVELEQSQEKLYTMAFYDSLTNLPNRDYFIEQVDLAIAQSSKNGQLIGLLFLDFDSFKSINDTAGHATGDLVLKKIAHVLASVLDKDDVIARFGGDEFLMQIKRRKETDILQVTRQIMKALKHPIVIETEEYFLPASIGVSMYPTDGNDAETLIMNADIAMYSAKAKGKNQVVYCDEEMKEQTTKRLRLTNSLYRALDKGELYVMYQPQVDTKTRKVCGFEALVRWNNPEYGLIPPLSFIPLAEQTGLIRPIGLFVLEEACNQLVSFTSQFTERLTMSVNLSLIQLKDSRIVEKIQEILVRTDVDVSCVQIEITESANFLDEPILLQRLIELKELGLSIAIDDFGTGHSSFSRLKTYPIDQLKIDIEFVRGISTGSEKDMALIKSIIQIAKNLGIEALAEGVETEEQLQYLSEHDCDKLQGYYFSKPLEVEAIIQKNMLTPRN
>NC_015152.1|WP_013608315.1|2887054_2887405_+|DUF3147-family-protein
MFYYLVKLTLSASLIVAVSEIAKRSSFVGALIASLPLTSLLALIWMYLEKTETQAIADLSRSIFWLVLPSLAFFLLFPALLSKGLHFWASLGISVSATIVLYGALVWVLRLFHVTL
>NC_015152.1|WP_013608314.1|2885877_2886891_-|extracellular-solute-binding-protein
MKKALVLLAAILLISTISLFSAAQPEAKPVSNELTLYYSHAADWTDPIIKEFQDRTGIKVNLVGAGTGELVSRIRAEKDNPLSDVLWGGGSDSYQVIVELLEPYSHAHMDKVLPVTRDPGNRWHGTTIDPMVIIYNPKLVAEADAPKGWADLLNPKFKGRIAHADPARSGSSFMALIIQLLSMGGDNEVGWTYMKNFVTNLDGKLLGSSSGTFKGVADGEYAVGITYEEAALKYERAGANLKVVYPVEGSSKVPSPIAIVKGAKNLENAQKFVDFILSKDVQVLMGNLNRRTVRTDIELPSIMIPNDKLGDIPYDTVWVGQNKDRIMNQWKNLIVGR
>NC_015152.1|WP_013608313.1|2884750_2885815_-|ABC-transporter-ATP-binding-protein
MSQPLFIEEVTKRYGDFTAIDRVSIAIKKGEFFTLLGPSGCGKTTLLRMIAGFNSIEAGTIRFGETVINSIPAYKRNAGMVFQNYAIFPHLSVFDNVAYGLKARGYTKENIEKDVEEVLGLVKMSEYKDRQPSQLSGGQQQRIALARAIVIKPDVLLMDEPLSNLDAKLRIEMRSVIKKIQQNLNITTVYVTHDQEEALAMSDRIAVMNLGTVQQIDKPLEIYTRPQNTFVSNFIGISSFIPCTVVGNAVSLLGHTFAIKLKKQHTGEAILAVRPEEASLSITDNGGIPGRIQFATFLGDFINYEVELGGERVIQVNEYLKEGLAIKQAGDVVYVSFDHKSVNLFTSDGKESLV
>NC_015152.1|WP_081454679.1|2883929_2884736_-|iron-ABC-transporter-permease
MQKGLNRFGFWGFVILSAFGLAIFFLVYPLVGMLSRSFLANDTGKLSLVNYVDFFRLPYYFNTLKHSFAVSITTTIFAILLGVPMGYVVARFNIPGKKILNAMVIISLLSPPFIGAYSWIMLLGRNGFITNLVRHIGIEIPTIYGFRGLILVFTLKLFPFIYMYVQGALQTFDSSLEEAAENLGVHGLKKLLTVTFPLIMPTITAGAVVVFMTSLADLGTPMLIGEGYKVLPVLVYEEYMSEIGGNATMASTLSVIIKNPYLHTGADQ
>NC_015152.1|WP_013608311.1|2882782_2883811_-|hypothetical-protein
MKPDQHSTSRRSTPWDEQGDITPSQAFIKQHHERHYHERHHALAETNEAEFLNSKIPFGCRLCGSSDIKKAGLSANGVQMYRCNACYRKFTVLTETVFDGHKIPISEWIEYLYNLFSYVSLRADSWNNKNAITTSRFWLEKVFLLVQEYQEGIVLEGEVTLDETFYSVRTSDLVMQEGKKLRGISRNQICIGVACDSHHVFCTLEGYGKPTQRKAYESFKDHIRPGSVLIHDKEGSHRKLVEGLGLQSRAYQSAELKKLQDKENPMERVNRIHFYLKRFFLAHSSFDRDSIEGFINLFSFVMNPPKEKLEKVDILINLGIECSRNISYRELFLKKKANSEGF
>NC_015152.1|WP_081454678.1|2881869_2882688_-|iron-ABC-transporter-permease
MSGLRPPAVKKLKKLPFILLTILCYFIALCALAPQITTMVTSFIKTRGPLFVSGFSLESYRSVWFKLSANIARTFLYSTIAMVFMIVIGMFTSYVIVRRKSNLTNILDFVLMSPYVIPGSVLGIILVMAFNKPPLVLTGTAAILIISYTIRKIPYIIRSSTGILYQLDLSSEEASINLGVSPMKTFFKITAILMLPGVLSGAILSWISTINELSSTLILYSGRTGTISVAIYTEIMKDGYGTAAALASILTFATIISLLVFNTLTKGKGSVV
>NC_015152.1|WP_013608309.1|2881033_2881873_-|inositol-monophosphatase
MTVSCFEDRLKIACGAAKMAGEMILASNLTDIAFLVKGKSDVVTHLDTASERLIRDIIHHSFPLDNFLGEEEGLIEYGNGGTWIVDPIDGTNNLVHGIPGYTISIAYEAQDSHPVIGVVFSPQSNELFYAAQGCGAFLNSKAIHISSVASIADAVSIAPPPLRVPSLIPSHLKIYELLCREGGDVRDFGSAALHLCYVAMGRVEAFVEFKLKYHDYAAGKVLVEEAGGCFSSLHCVDHMPYQDILVTNKALFPWYTRFIRNLLGEQACNDESESSFHSS
>NC_015152.1|WP_013608318.1|2892606_2894601_-|transketolase
MKTNQLADAIRILSMDGVQKANSGHPGAPMGMADIAEVLWRKIMAHNPKNPQWANRDRFVLSNGHASMLLYSLLHLSGYDLGLDDLKQFRQLHSRTAGHPEYKLTPGVETTTGPLGQGLANAVGMALAEKMLAAQFNKEGFPVVNHYTYTFLGDGCLMEGISHEAASLAGTWKLGKLIAIYDNNGISIDGEVKGWLTDDTAKRFEAYGWQVFKDINGHDSDAIQKVISAARYETSKPTLIMCKTTIGYGSPNKGGKESCHGAPLGSDEVTLARKQLGWEYDEPFFVPEEIYKAWDQTERGGKLEHKWNDLFASYEKAYPAEAAELKRRLNGQFPADWEASFDAVVKQWQADKVKVASRKASQMTLDVLGKLFPELTGGSADLSPSNLTQWKGVQDFDVTTGKGTYLRFGVREFGMTAVLNGMALHGGFLTYGATFLMFMEYARNALRMSALMGLRNVMVFTHDSIGLGEDGPTHQPVEQIASLRMTPNMTTWRPCDAVETACAWKSAVKRTDGPTALLLSRQNLAPQERTETQLAQISKGAYTLYESAAKPQVILIGTGSEVSLALEAGKKLASEGKAVRVVSMPSPEVFERQDAAYKEAVLPASVKARVAVEAAWTDFWYKYVGLDGKVIGMHSFGESGPAEKLYEFFGITAVKVYEAAASLL
>NC_015152.1|WP_013608319.1|2894836_2895514_-|GntR-family-transcriptional-regulator
MDDTSRKVCDQAYANIKKKILDFEYKPGESIAETTLSASLGISRTPIREALRRLEQDGLLENKNGRKKVTIITVDDLQQIFELKIAIEGMVMRNCAETRTEKDISKLRKAIKQMTDLEDKARNGFTKNLFNEWGEVNAAFHSLTYKIANNSRAEAIINNLNMQWHRWRVGITAMEWRLERNISEHIQFCEAIIEGDGGKAFQLMEKHTKDLFNTVVNIIKTFSLD
>NC_015152.1|WP_013608320.1|2895558_2896221_-|Asp/Glu/hydantoin-racemase
MNRIALIHTVPTVYLSFANGLKELLPDTKITNMLDDFLASDAEVRGYFSKENQRRLYSFLDAAEKTHPDVIAVTCSTLSPYVVAARALYDIPLVTIDELMICESVRIGTSMLIVSTAESTVIPTKNKLLDEAVRQKKHILIDNIVCNEAYVAIKNRDTERHDKHVLKAIHEIQKNYDVIILAQASMAHLEQQVRAITSSIVVSSPRFCIQNIMAVLKTCQ
>NC_015152.1|WP_013608321.1|2896217_2896565_-|VOC-family-protein
MIKSVLDHCAVMIQDIEFGINLCETVFGMTVRKTEMKEDRIFQIWFDQGIQLTRSDFPGVPGHEIVNHIGIRVDDVEKCLSLASKYGAKSLEKGLNWLVFPFGLCIEVLPMEKHV
>NC_015152.1|WP_013608322.1|2896617_2897724_-|isocitrate/isopropylmalate-dehydrogenase-family-protein
MRKYNIALLPGDGVGPEVVKEGEKVLRAVSKVVGLDLDYQEYYVGNQRYLEHGEVLPEQTFQDCKAADAILMGAIGLPRAGMKPVTDKYGTEVTGHLMFKLRFDLDLFAGVRPIKSFPGVPSALAGKDRKIDLIILRESTEGLFSSYGGGGVVNDACAYDTQIITRKGTERAARYCFELAIGRNGRPVDGKRLVTCTHKGNVFRSFAYMTKVFNEVAEEYKESVDSELCMIDALTLLMTQRPENYDIILAENMHGDIISDMAAAYVGGMGMAPSGDIGFEHGLFQPSHGSAPTIAGKGLANPTGTILSAKMMLDWLGRKHEDAALTKAAQLIDDAVYQTFLEGVRTSDVAGTASTSMFGDTVVKHIMK
>NC_015152.1|WP_013608323.1|2897741_2898746_-|TRAP-transporter-substrate-binding-protein-DctP
MKKILIMVLVALVATVGVFASGASESGTAAAPKKVVVAHTGNERTTYQTGMLAFKSELESLTNGRFVCEIYPATLGGDKVLMEGLQIGTVDFAEVNTSVVTSIVPELSVLDLPYLFASSEHVYKVLDGEIGAQMLALVQAKAGIVPVAYWENGFRYFTNDVRPITKPDDLKGIKMRSMQSATHLASYRLWGADATPMSISEMITAMQQGVIQGHDNNADTVVANSMWEYQDYFSESGHFYGSKVLAFSPSFWKSLSSEDQKLFVQAVNYARDIQRKEVSVRFEKSIQTLQENGMNVTRKKDIDTDAFIKSVQPVWDEYKNKYGDELIKKIESAR
>NC_015152.1|WP_013608324.1|2898766_2900035_-|TRAP-transporter-large-permease
MIVVVLILIVTMFLGVPIAFSLAGASIVGFLISGTSLMVLGQQLTMGIAKYSLLPLPFFIFSGYLMGQGGISRRLIKVVQAYTGHRTGGVAMVTIISCMIFAAVSGSSSATTAAIGSILIPAMLERKYDRAFAGSVTAVSAELGMIIPPSISMIIYGVITETSIAKLFMAGFLPGIFIGITLIIVSYVLCRKKGYSGSEKASKEEKHNALKDSWLALLMPVVVLGGIYTGIFTATESSVVAVVYAIIVGTFVYKEISWEKFKKSAIDTLTTSGMIMMVIACATAFSFLLTREQIPQNVAIAFSTIAPNSAVFLILTILLLTLTGMFFDSTSAVTVLAGILTPVAIAFGINPIHFGVIMIVNMAIGCVTPPVGVNLFVACKLGDIQMEKMFKELIPFWIVILLDLIVIAFVPQLSLFLPSLMH
>NC_015152.1|WP_013608325.1|2900031_2900544_-|TRAP-transporter-small-permease
MKGSKREHTDNTFIALVDIFNTWLQYVGILILCIMTITVFVAVLSRFFIGFSLSWVEESATFAMAWICAIGAGLTARKGGLTTIEIGVMWLPEHIKRVVAVIAALISFCIFTVIIYYGTEMAIIVNSQHATTIPMLTMFWVYVAMPFGVLIMFVNTLIHTVEVVRGGAAK
>NC_015152.1|WP_155816125.1|2900946_2901858_-|hypothetical-protein
MLCCIYLNFGGRAVKRNTSRTILALLVVLLVVGGLFAQTTTSGTLKFTGAWDGKKGIEAKGEAAYQVKIPMLVGEGPLMSGNNLKLKTQIGVSPIAATATLDAVLTPIAVLEVSLGGGAGTGWDFSLMDLAGLKLATGGIGTTLNSDQLAGTYYMGRLGAAFQFDTGAILEGDWTSVVIRAYQELNYKGYSNAPADIAWEFENGGAMVNGFNYKGEYILGYQMPLIVNLVGVQLETYAYNVLDSARTGLFSDLSILANTQINENLSVLTAVQFTNFEKDANRVIVKKAEPAFKRVAMILSYGY
>NC_015152.1|WP_013608327.1|2902290_2902737_+|PTS-sugar-transporter-subunit-IIA
MNIKNKLSPAVIKTSLQGTTKEEVIRELLEVLVEAQLVTDRETVYEALMERERKMSTGLQHGVAIPHAKTTAVKSLVACIGLKPEGVDFAALDGLPSRIFIMTLSPIDRVGPHVQFLAEVSMVIRTEEARERLLQSKNAQDVLSVFGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015152_1	1.2\|2363833\|30\|NC_015152\|CRISPRCasFinder,CRT	2363833-2363862	30	NZ_CP014508	Burkholderia sp. PAMC 28687 plasmid 1, complete sequence	175507-175536	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	89142-89171	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	109931-109960	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	MT498054	Gordonia Phage Engineer, complete genome	27723-27752	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	KU998244	Gordonia phage Smoothie, complete genome	27778-27807	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	MF919520	Gordonia phage Lozinak, complete genome	27778-27807	6	0.8
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	142517-142546	6	0.8
NC_015152_1	1.8\|2364229\|30\|NC_015152\|CRISPRCasFinder,CRT	2364229-2364258	30	NZ_CP022418	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence	195543-195572	6	0.8
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	MN694329	Marine virus AFVG_250M203, complete genome	12146-12175	6	0.8
NC_015152_1	1.2\|2363833\|30\|NC_015152\|CRISPRCasFinder,CRT	2363833-2363862	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	798538-798567	7	0.767
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	417366-417395	7	0.767
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	51298-51327	7	0.767
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	333611-333640	7	0.767
NC_015152_1	1.7\|2364163\|30\|NC_015152\|CRISPRCasFinder,CRT	2364163-2364192	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	586127-586156	7	0.767
NC_015152_1	1.8\|2364229\|30\|NC_015152\|CRISPRCasFinder,CRT	2364229-2364258	30	MN693874	Marine virus AFVG_250M17, complete genome	25010-25039	7	0.767
NC_015152_1	1.8\|2364229\|30\|NC_015152\|CRISPRCasFinder,CRT	2364229-2364258	30	MN694174	Marine virus AFVG_250M28, complete genome	24933-24962	7	0.767
NC_015152_1	1.8\|2364229\|30\|NC_015152\|CRISPRCasFinder,CRT	2364229-2364258	30	MN693641	Marine virus AFVG_250M18, complete genome	15702-15731	7	0.767
NC_015152_1	1.17\|2364823\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364823-2364852	30	NC_015657	Candidatus Frankia datiscae plasmid pFSYMDG02, complete sequence	4389-4418	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	577865-577894	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1155801-1155830	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1125837-1125866	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1203712-1203741	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	566142-566171	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1222024-1222053	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1156402-1156431	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1181187-1181216	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1363729-1363758	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	160063-160092	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	571115-571144	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	563820-563849	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	728282-728311	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1230697-1230726	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	919537-919566	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	824641-824670	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1205247-1205276	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1341724-1341753	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	844471-844500	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	486942-486971	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	366137-366166	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1352611-1352640	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	443799-443828	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	716803-716832	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	587624-587653	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1491668-1491697	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1630566-1630595	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1296558-1296587	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1440331-1440360	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1068934-1068963	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1155807-1155836	7	0.767
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	744644-744673	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	57401-57430	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	115260-115289	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	18045-18074	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	11929-11958	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	124573-124602	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	163329-163358	7	0.767
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	18045-18074	7	0.767
NC_015152_1	1.37\|2366144\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2366144-2366173	30	NC_022782	Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence	73380-73409	7	0.767
NC_015152_1	1.37\|2366144\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2366144-2366173	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	90070-90099	7	0.767
NC_015152_1	1.6\|2364097\|30\|NC_015152\|CRISPRCasFinder,CRT	2364097-2364126	30	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	985620-985649	8	0.733
NC_015152_1	1.6\|2364097\|30\|NC_015152\|CRISPRCasFinder,CRT	2364097-2364126	30	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	658793-658822	8	0.733
NC_015152_1	1.16\|2364757\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364757-2364786	30	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	24120-24149	8	0.733
NC_015152_1	1.17\|2364823\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364823-2364852	30	NC_010608	Exiguobacterium arabatum pEspB plasmid	16606-16635	8	0.733
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	260387-260416	8	0.733
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_CP021649	Acidovorax sp. T1 plasmid p1-T1, complete sequence	74098-74127	8	0.733
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	KR080200	Mycobacterium phage AlanGrant, complete genome	45431-45460	8	0.733
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	KR080194	Mycobacterium phage Vincenzo, complete genome	45431-45460	8	0.733
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP014147	Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence	30221-30250	8	0.733
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP031100	Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence	7030-7059	8	0.733
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	NZ_CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	26836-26865	8	0.733
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	MN694669	Marine virus AFVG_250M354, complete genome	24954-24983	8	0.733
NC_015152_1	1.26\|2365417\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365417-2365446	30	MN693003	Marine virus AFVG_117M79, complete genome	24642-24671	8	0.733
NC_015152_1	1.28\|2365550\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365550-2365579	30	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	215462-215491	8	0.733
NC_015152_1	1.29\|2365616\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365616-2365645	30	MN693504	Marine virus AFVG_25M410, complete genome	32554-32583	8	0.733
NC_015152_1	1.39\|2366276\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2366276-2366305	30	MN694065	Marine virus AFVG_250M443, complete genome	41042-41071	8	0.733
NC_015152_1	1.10\|2364361\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364361-2364390	30	MG945633	UNVERIFIED: Microviridae sp. isolate 6278-1602, complete genome	5628-5657	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP021826	Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence	97083-97112	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NC_019313	Sinorhizobium meliloti plasmid pHRC017, complete sequence	266132-266161	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1716936-1716965	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	194979-195008	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	416967-416996	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	584109-584138	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	472981-473010	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	359413-359442	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	361945-361974	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	362029-362058	9	0.7
NC_015152_1	1.13\|2364559\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364559-2364588	30	NZ_CP032928	Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence	460184-460213	9	0.7
NC_015152_1	1.15\|2364691\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364691-2364720	30	LR745207	uncultured phage genome assembly, chromosome: 1	20052-20081	9	0.7
NC_015152_1	1.17\|2364823\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364823-2364852	30	NC_014615	Escherichia coli plasmid pETN48, complete sequence	103963-103992	9	0.7
NC_015152_1	1.17\|2364823\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364823-2364852	30	NZ_CP024852	Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence	165122-165151	9	0.7
NC_015152_1	1.17\|2364823\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364823-2364852	30	NC_025139	Escherichia coli plasmid pH2291-144, complete sequence	68331-68360	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NZ_KP691635	Bifidobacterium longum subsp. longum 1-6B plasmid p1-6B2, complete sequence	889-918	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_015066	Bifidobacterium longum subsp. infantis 157F plasmid p157F-NC2, complete sequence	2387-2416	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_004252	Bifidobacterium longum DJO10A plasmid pDOJH10L, complete sequence	8459-8488	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_004443	Bifidobacterium longum VMKB44 plasmid pB44, complete sequence	889-918	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	JN699011	Mycobacterium phage Stinger, complete genome	43404-43433	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	NC_008195	Mycobacterium phage Cooper, complete genome	44027-44056	9	0.7
NC_015152_1	1.19\|2364955\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2364955-2364984	30	KF279411	Mycobacterium phage Adawi, complete genome	43496-43525	9	0.7
NC_015152_1	1.39\|2366276\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2366276-2366305	30	MN095770	Serratia phage Slocum, complete genome	86680-86709	9	0.7
NC_015152_1	1.27\|2365483\|31\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365483-2365513	31	MT701590	Klebsiella phage Miami, complete genome	83235-83265	10	0.677
NC_015152_1	1.34\|2365946\|30\|NC_015152\|CRISPRCasFinder,CRT,PILER-CR	2365946-2365975	30	MK387337	Vibrio phage ValB1MD, complete genome	158231-158260	10	0.667

1. spacer 1.2|2363833|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP014508 (Burkholderia sp. PAMC 28687 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.8

agaaatggccgtgtggagatcaacaacatc	CRISPR spacer
aacgatggccgtgcggagatcagcaacata	Protospacer
*. .*********.********.******

2. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP017945 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
ccacgtcgaacgggttgcccgtctgattga	Protospacer
********** **.********** . **.

3. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
acaactcgaatggattgcccgtctcgggcg	Protospacer
 **  ***** ****************  *

4. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to MT498054 (Gordonia Phage Engineer, complete genome) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
caccgtagaagggcttgcccgtctcggggt	Protospacer
*  *** ****** ************* *

5. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to KU998244 (Gordonia phage Smoothie, complete genome) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
caccgtagaagggcttgcccgtctcggggt	Protospacer
*  *** ****** ************* *

6. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to MF919520 (Gordonia phage Lozinak, complete genome) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
caccgtagaagggcttgcccgtctcggggt	Protospacer
*  *** ****** ************* *

7. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 6, identity: 0.8

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
ccacgtcggagggatttcccgtcagcgtgc	Protospacer
********.******* ******   ***

8. spacer 1.8|2364229|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP022418 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence) position: , mismatch: 6, identity: 0.8

cttccttgtctgccatcagtcgtgtggctt	CRISPR spacer
cgcctgtgtctgccatcagtcgtgcggcgt	Protospacer
* .*. ******************.*** *

9. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN694329 (Marine virus AFVG_250M203, complete genome) position: , mismatch: 6, identity: 0.8

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaagtctaatgctgttgttcctgctgct	Protospacer
** .******* *************.  **

10. spacer 1.2|2363833|30|NC_015152|CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.767

agaaatggccgtgtggagatcaacaacatc	CRISPR spacer
gacgatggccgtctggagatcgacaacaac	Protospacer
.. .******** ********.****** *

11. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
acacgtcgaacggatggcccgtctcgtgct	Protospacer
 ********* **** **********

12. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
ccgggtcgaaggggttgcccgtctccagga	Protospacer
**. *********.*********** . *.

13. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.767

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
acacgtcgaacggatggcccgtctcgtgct	Protospacer
 ********* **** **********

14. spacer 1.7|2364163|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.767

ccacgtcgaagggattgcccgtctcggtgg	CRISPR spacer
ccgggtcgaaggggttgcccgtctccagga	Protospacer
**. *********.*********** . *.

15. spacer 1.8|2364229|30|NC_015152|CRISPRCasFinder,CRT matches to MN693874 (Marine virus AFVG_250M17, complete genome) position: , mismatch: 7, identity: 0.767

cttccttgtctgccatcagtcgtgtggctt	CRISPR spacer
cttcctcgtctgccatcagtagtttccata	Protospacer
******.************* ** *   *

16. spacer 1.8|2364229|30|NC_015152|CRISPRCasFinder,CRT matches to MN694174 (Marine virus AFVG_250M28, complete genome) position: , mismatch: 7, identity: 0.767

cttccttgtctgccatcagtcgtgtggctt	CRISPR spacer
cttcctcgtctgccatcagtagtttccata	Protospacer
******.************* ** *   *

17. spacer 1.8|2364229|30|NC_015152|CRISPRCasFinder,CRT matches to MN693641 (Marine virus AFVG_250M18, complete genome) position: , mismatch: 7, identity: 0.767

cttccttgtctgccatcagtcgtgtggctt	CRISPR spacer
cttcctcgtctgccatcagtagtttccata	Protospacer
******.************* ** *   *

18. spacer 1.17|2364823|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_015657 (Candidatus Frankia datiscae plasmid pFSYMDG02, complete sequence) position: , mismatch: 7, identity: 0.767

gattgtatcaaatctctcagatacggatga	CRISPR spacer
ctttgtatcaaatctcttagatagctttga	Protospacer
  ***************.*****    ***

19. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

20. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

21. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

22. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

23. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

24. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

25. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tcttcaagccgatggccgacaagatcgcca	Protospacer
 ..********.**** ********** *.

26. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tcttcaagccgatggccgacaagatcgcca	Protospacer
 ..********.**** ********** *.

27. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

28. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

29. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

30. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

31. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

32. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

33. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

34. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

35. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

36. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

37. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

38. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

39. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

40. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

41. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

42. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

43. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

44. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

45. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

46. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

47. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaggccggtggccgacaagatcgcca	Protospacer
  .***.********* ********** *.

48. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

49. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

50. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.767

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggccgacaagatcgcca	Protospacer
  .********.**** ********** *.

51. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

52. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

53. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

54. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

55. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

56. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

57. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
acaaattctaaagctgttgttcctctaata	Protospacer
** .* ****************** ** .

58. spacer 1.37|2366144|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_022782 (Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence) position: , mismatch: 7, identity: 0.767

acaagatagaacagaagggcaaggaagcca	CRISPR spacer
taaagatacaacagaagggcaagggctaca	Protospacer
  ****** ***************.   **

59. spacer 1.37|2366144|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 7, identity: 0.767

acaagatagaacagaagggcaaggaagcca	CRISPR spacer
taaagatacaacagaagggcaagggctaca	Protospacer
  ****** ***************.   **

60. spacer 1.6|2364097|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.733

attccggcctaccagccgctcttacttgcg	CRISPR spacer
cagcacgcctaccagccgctcgtaattgct	Protospacer
   *  *************** ** ****

61. spacer 1.6|2364097|30|NC_015152|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.733

attccggcctaccagccgctcttacttgcg	CRISPR spacer
cagcacgcctaccagccgctcgtaattgct	Protospacer
   *  *************** ** ****

62. spacer 1.16|2364757|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 8, identity: 0.733

cttgctgacttccctgctctctcccttgtc	CRISPR spacer
accgctgacttccctggtctctccagtgag	Protospacer
 ..************* *******  **

63. spacer 1.17|2364823|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_010608 (Exiguobacterium arabatum pEspB plasmid) position: , mismatch: 8, identity: 0.733

gattgtatcaaatctctcagatacggatga	CRISPR spacer
aattgtatcaaatttctcagaaaccacaaa	Protospacer
.************.******* ** .  .*

64. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 8, identity: 0.733

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
tgttcaagccgatggcagacaagattgcga	Protospacer
  .********.*************.*  .

65. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021649 (Acidovorax sp. T1 plasmid p1-T1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
cggtttggcaggtggcaggcaagatcgacg	Protospacer
   *. .** ********.***********

66. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to KR080200 (Mycobacterium phage AlanGrant, complete genome) position: , mismatch: 8, identity: 0.733

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
gcgacgagccggtggcgggcaagatcgacc	Protospacer
..  *.**********.*.**********

67. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to KR080194 (Mycobacterium phage Vincenzo, complete genome) position: , mismatch: 8, identity: 0.733

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
gcgacgagccggtggcgggcaagatcgacc	Protospacer
..  *.**********.*.**********

68. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014147 (Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence) position: , mismatch: 8, identity: 0.733

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
aatattcctatagctgttgttcctgtacca	Protospacer
* ..  .*** ******************

69. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031100 (Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence) position: , mismatch: 8, identity: 0.733

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
aatattcctagagctgttgttcctgtacca	Protospacer
* ..  .***.******************

70. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.733

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
aatattcctatagctgttgttcctgtacca	Protospacer
* ..  .*** ******************

71. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN694669 (Marine virus AFVG_250M354, complete genome) position: , mismatch: 8, identity: 0.733

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
aaacttcctaaagctgttggtcctgttcct	Protospacer
*     .************ ****** ***

72. spacer 1.26|2365417|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN693003 (Marine virus AFVG_117M79, complete genome) position: , mismatch: 8, identity: 0.733

accgagtctaaagctgttgttcctgtacct	CRISPR spacer
aaacttcctaaagctgttggtcctgttcct	Protospacer
*     .************ ****** ***

73. spacer 1.28|2365550|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.733

ggaagcatgtacttgacccagttcgccgtt	CRISPR spacer
agctgcacgtacttgagccagttcgcctcg	Protospacer
.*  ***.******** ********** .

74. spacer 1.29|2365616|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN693504 (Marine virus AFVG_25M410, complete genome) position: , mismatch: 8, identity: 0.733

tgcatttaaacttttaatcaaaccatatac	CRISPR spacer
catatttaaactattaatcataccatctct	Protospacer
...********* ******* ***** * .

75. spacer 1.39|2366276|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN694065 (Marine virus AFVG_250M443, complete genome) position: , mismatch: 8, identity: 0.733

gagcaccttgtctatatgctccaccagctt	CRISPR spacer
ttgttgcttttctatttgctccaccagctc	Protospacer
  *.  *** ***** *************.

76. spacer 1.10|2364361|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MG945633 (UNVERIFIED: Microviridae sp. isolate 6278-1602, complete genome) position: , mismatch: 9, identity: 0.7

ctatagaacgttggatgctgagtttggttt	CRISPR spacer
tcgtagaacgttggatgttgagttgattcg	Protospacer
...**************.****** . *.

77. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021826 (Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
tcctttcgacggtgacgaggaaggaacggg	Protospacer
. . ******* **************

78. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_019313 (Sinorhizobium meliloti plasmid pHRC017, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ttccttcgacggtgacgaggaaggaacggg	Protospacer
. . ******* **************

79. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ttccttcgacggtgacgaggaaggaacggg	Protospacer
. . ******* **************

80. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ttccttcgacggtgacgaggaaggaacggg	Protospacer
. . ******* **************

81. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ttccttcgacgttgacgaggaaggaacggg	Protospacer
. . *******.**************

82. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

83. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

84. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

85. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

86. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

87. spacer 1.13|2364559|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032928 (Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence) position: , mismatch: 9, identity: 0.7

catgttcgacgctgacgaggaaggaaactc	CRISPR spacer
ccgaggcgacgctgacgacgaaggaaaacg	Protospacer
*  .  ************ ******** .

88. spacer 1.15|2364691|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.7

gacagcccccctgcatcccattggctcttt	CRISPR spacer
tgtgctcaccctgaatcccattggctcttg	Protospacer
 ... .* ***** ***************

89. spacer 1.17|2364823|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_014615 (Escherichia coli plasmid pETN48, complete sequence) position: , mismatch: 9, identity: 0.7

gattgtatcaaatctctcagatacggatga	CRISPR spacer
ttttgtataaaatctctcagatacatcaat	Protospacer
  ****** ***************.   .

90. spacer 1.17|2364823|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024852 (Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence) position: , mismatch: 9, identity: 0.7

gattgtatcaaatctctcagatacggatga	CRISPR spacer
ttttgtataaaatctctcagatacatcaat	Protospacer
  ****** ***************.   .

91. spacer 1.17|2364823|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_025139 (Escherichia coli plasmid pH2291-144, complete sequence) position: , mismatch: 9, identity: 0.7

gattgtatcaaatctctcagatacggatga	CRISPR spacer
ttttgtataaaatctctcagatacatcaat	Protospacer
  ****** ***************.   .

92. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP691635 (Bifidobacterium longum subsp. longum 1-6B plasmid p1-6B2, complete sequence) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
ccaacaagcagctggcagacaagatcgtgc	Protospacer
 .  ***** * ***************

93. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_015066 (Bifidobacterium longum subsp. infantis 157F plasmid p157F-NC2, complete sequence) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
ccaacaagcagctggcagacaagatcgtgc	Protospacer
 .  ***** * ***************

94. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_004252 (Bifidobacterium longum DJO10A plasmid pDOJH10L, complete sequence) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
ccaacaagcagctggcagacaagatcgtgc	Protospacer
 .  ***** * ***************

95. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_004443 (Bifidobacterium longum VMKB44 plasmid pB44, complete sequence) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
ccaacaagcagctggcagacaagatcgtgc	Protospacer
 .  ***** * ***************

96. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
gcgaggagccggtggcgggcaagatcgacc	Protospacer
..   .**********.*.**********

97. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to NC_008195 (Mycobacterium phage Cooper, complete genome) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
gcgaggagccggtggcgggcaagatcgacc	Protospacer
..   .**********.*.**********

98. spacer 1.19|2364955|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to KF279411 (Mycobacterium phage Adawi, complete genome) position: , mismatch: 9, identity: 0.7

atctcaagccggtggcagacaagatcgacg	CRISPR spacer
gcgaggagccggtggctggcaagatcgacc	Protospacer
..   .********** *.**********

99. spacer 1.39|2366276|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MN095770 (Serratia phage Slocum, complete genome) position: , mismatch: 9, identity: 0.7

gagcaccttgtctatatgctccaccagctt	CRISPR spacer
cagaaccttgtctatatgctctactcatcc	Protospacer
 ** *****************.**. ....

100. spacer 1.27|2365483|31|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 10, identity: 0.677

gaagggagtgctgtagatgaaagatatgttt	CRISPR spacer
aaagggagtgctggagaagaaagaagctgaa	Protospacer
.************ *** ****** ..

101. spacer 1.34|2365946|30|NC_015152|CRISPRCasFinder,CRT,PILER-CR matches to MK387337 (Vibrio phage ValB1MD, complete genome) position: , mismatch: 10, identity: 0.667

tgcaatgtattgtttcatgcaatccttcct	CRISPR spacer
atcaatgtattgtttcatgtaatttccttc	Protospacer
  *****************.***.......

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410848 : 418371

Enterobacteria_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013606068.1\|410848_411406_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	2.9e-07	29.4
WP_013606069.1\|411726_412626_+	dTDP-4-dehydrorhamnose reductase	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	8.0e-07	27.7
WP_013606070.1\|412622_413684_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.1e-78	46.0
WP_013606071.1\|413700_414243_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.4e-46	54.1
WP_013606072.1\|414264_415017_+	nucleotidyltransferase family protein	I7I009	Enterobacteria_phage	1.9e-06	30.0
WP_013606073.1\|415147_416332_+	GHMP kinase	NA	NA	NA	NA
WP_013606074.1\|416507_417476_+	glycosyltransferase	NA	NA	NA	NA
WP_013606075.1\|417486_418371_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.5e-102	62.5

DBSCAN-SWA_2

1393260 : 1403848

Synechococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013606962.1\|1393260_1394142_+	sigma-70 family RNA polymerase sigma factor	F4YCU2	Synechococcus_phage	2.3e-30	31.9
WP_013606963.1\|1394297_1395035_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013606964.1\|1395045_1395888_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_013606965.1\|1395893_1396697_+	gluconate 5-dehydrogenase	W8CYX9	Bacillus_phage	8.4e-08	39.7
WP_013606966.1\|1397065_1399777_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	4.8e-87	41.2
WP_013606967.1\|1400073_1400361_+	hypothetical protein	NA	NA	NA	NA
WP_013606968.1\|1400357_1401377_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.3e-65	43.5
WP_013606969.1\|1401388_1401922_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.7e-25	45.0
WP_013606970.1\|1402210_1403848_+	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	5.0e-47	26.7

DBSCAN-SWA_3

2327051 : 2340235

Prochlorococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013607817.1\|2327051_2330699_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.0e-27	27.7
WP_013607818.1\|2330649_2331972_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_013607819.1\|2331973_2333131_-	phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	9.0e-19	26.6
WP_013607820.1\|2333117_2334413_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.2e-17	32.3
WP_013607821.1\|2334409_2335444_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-60	43.6
WP_013607822.1\|2335436_2336837_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.5e-55	34.9
WP_013607823.1\|2336839_2337553_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	8.5e-44	41.7
WP_013607824.1\|2337588_2338089_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_041381322.1\|2338178_2338577_-	C-GCAxxG-C-C family protein	NA	NA	NA	NA
WP_013607826.1\|2338618_2340235_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.4e-62	30.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015152

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection