CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016603	Acinetobacter pittii PHEA-2 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3,WYL	2	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016603_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016603_1

1685820-1685914

Orphan

Consensus_repeat	Method
TCCTTATGGTTTTCATAATCTTTATAAGCTGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016603_1

>merge|NC_016603|1|1685820-1685914|CRISPRCasFinder
TCCTTATGGTTTTCATAATCTTTATAAGCTGATGCTCTCAGCGCAAAGTAAACTCCATAATCCTTGTGGTTTTCATAATCTTTATAAGCTGATGC

>NC_016603|1|1|1685820-1685914|CRISPRCasFinder
TCCTTATGGTTTTCATAATCTTTATAAGCTGATGC	TCTCAGCGCAAAGTAAACTCCATAA
TCCTTGTGGTTTTCATAATCTTTATAAGCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016603.1\|YP_004995837.1\|1680981_1681500_-\|monofunctional-chorismate-mutase-precursor-(CM-F)	unknown	unknown	gnl\|CDD\|236143
NC_016603.1\|YP_004995843.1\|1686147_1687602_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_016603.1\|YP_004995848.1\|1692895_1693987_+\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004995850.1\|1694972_1695338_-\|putative-5-carboxymethyl-2-hydroxymuconate-delta-isomerase	unknown	unknown	gnl\|CDD\|238324
NC_016603.1\|YP_004995844.1\|1687611_1688316_-\|fimbrial-chaperone-protein	unknown	unknown	gnl\|CDD\|225663
NC_016603.1\|YP_004995841.1\|1683992_1685012_-\|putative-biofilm-synthesis-domain-protein	unknown	unknown	gnl\|CDD\|368347
NC_016603.1\|YP_004995832.1\|1673702_1674218_+\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004995852.1\|1697318_1698491_+\|putative-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_016603.1\|YP_004995849.1\|1694022_1694850_+\|hydoxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|238575
NC_016603.1\|YP_004995847.1\|1692420_1692678_+\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004995834.1\|1675050_1675734_-\|putative-hydroxylase	unknown	unknown	gnl\|CDD\|235483
NC_016603.1\|YP_004995833.1\|1674613_1675009_+\|transcriptional-regulator-(FurR-family)	unknown	unknown	gnl\|CDD\|223806
NC_016603.1\|YP_004995836.1\|1678560_1680750_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227113
NC_016603.1\|YP_004995835.1\|1675828_1678063_-\|putative-ferric-siderophore-receptor-protein	unknown	unknown	gnl\|CDD\|227115
NC_016603.1\|YP_004995838.1\|1681617_1682301_-\|short-chain-dehydrogenase/reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187631
NC_016603.1\|YP_004995845.1\|1688389_1688926_-\|putative-biofilm-synthesis-protein	unknown	unknown	gnl\|CDD\|368347
NC_016603.1\|YP_004995839.1\|1682310_1683072_-\|putative-glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187631
NC_016603.1\|YP_004995840.1\|1683079_1683766_-\|putative-glutathione-S-transferase	unknown	unknown	gnl\|CDD\|223698
NC_016603.1\|YP_004995851.1\|1695375_1697088_-\|exonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|350795
NC_016603.1\|YP_004995846.1\|1689495_1692102_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585

Protein	Function_ID	Function_description	E-value
NC_016603.1\|YP_004995837.1\|1680981_1681500_-\|monofunctional-chorismate-mutase-precursor-(CM-F)	gnl\|CDD\|236143	PRK08055, PRK08055, chorismate mutase; Provisional.	4.95054e-87
NC_016603.1\|YP_004995843.1\|1686147_1687602_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	4.25876e-46
NC_016603.1\|YP_004995850.1\|1694972_1695338_-\|putative-5-carboxymethyl-2-hydroxymuconate-delta-isomerase	gnl\|CDD\|238324	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.	6.43561e-35
NC_016603.1\|YP_004995844.1\|1687611_1688316_-\|fimbrial-chaperone-protein	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	2.91757e-21
NC_016603.1\|YP_004995841.1\|1683992_1685012_-\|putative-biofilm-synthesis-domain-protein	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	1.30184e-19
NC_016603.1\|YP_004995852.1\|1697318_1698491_+\|putative-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_016603.1\|YP_004995849.1\|1694022_1694850_+\|hydoxyethylthiazole-kinase	gnl\|CDD\|238575	cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.	1.26878e-89
NC_016603.1\|YP_004995834.1\|1675050_1675734_-\|putative-hydroxylase	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	3.59419e-148
NC_016603.1\|YP_004995833.1\|1674613_1675009_+\|transcriptional-regulator-(FurR-family)	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.73452e-18
NC_016603.1\|YP_004995836.1\|1678560_1680750_+\|hypothetical-protein	gnl\|CDD\|227113	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism].	0
NC_016603.1\|YP_004995835.1\|1675828_1678063_-\|putative-ferric-siderophore-receptor-protein	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	0
NC_016603.1\|YP_004995838.1\|1681617_1682301_-\|short-chain-dehydrogenase/reductase-family-oxidoreductase	gnl\|CDD\|187631	cd05373, SDR_c10, classical (c) SDR, subgroup 10. This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.41552e-24
NC_016603.1\|YP_004995845.1\|1688389_1688926_-\|putative-biofilm-synthesis-protein	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	7.2591e-16
NC_016603.1\|YP_004995839.1\|1682310_1683072_-\|putative-glucose-1-dehydrogenase	gnl\|CDD\|187631	cd05373, SDR_c10, classical (c) SDR, subgroup 10. This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.93992e-72
NC_016603.1\|YP_004995840.1\|1683079_1683766_-\|putative-glutathione-S-transferase	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	8.13245e-22
NC_016603.1\|YP_004995851.1\|1695375_1697088_-\|exonuclease-V-subunit-alpha	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.48696e-81
NC_016603.1\|YP_004995846.1\|1689495_1692102_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0

>NC_016603.1|YP_004995841.1|1683992_1685012_-|putative-biofilm-synthesis-domain-protein
MSLNSMNKAQIESYKFFPLFLKYFVGICLFYLVYAFFSPAHAACTVSGTTNNTFIYTAANINSDATVNLSGTITCTNLGLPQISNFMCMKTVFTGTTNAINSVSLPYTVTATVGGAGSSTTNQTSNVWYGPVATVASNNIVSYSVNIKVPARTGSLIAYPQGTYTASVRLYWDMDLLGLSCGDLLGGWDSGDTLLTANFVVPSLCQLNSTSTVDFGNINDIGTTKRDYTAQGAVNTTCNFGTPYSIYLGDGNNRIAGGFRRMINSNNEFIPYQLYKDSNYSTVWDATGGVTNVGGTGGVSKTGTGSAQTTTVYGKIPQGTAIASRPGVYADSVVVTVTY
>NC_016603.1|YP_004995840.1|1683079_1683766_-|putative-glutathione-S-transferase
MSNIILHQWEISPFCQKISRVLKFKGIPFDTVNYNGILGAKVPLLSKVGKVPVIDHNGQRIQDSTRIARYLDEAFPDTPRLYPEDPNQKALAELWEDWADESLYFYEVYLRVNDSEALEEAIRISSIGRPAYEKPMVKGFILAELKTQLFFQGLGRMKAENVEEEFIRHLDRIEQVLSQSEWLVGNSQTIADIAVVAQLGEVIRTSKKFSKEILNRPFIALWYKKQTG
>NC_016603.1|YP_004995839.1|1682310_1683072_-|putative-glucose-1-dehydrogenase
MTSATPDKTRDCVVVIGVGASQGIGAAVCRLFAKEGLKVYVAGRTFQKIEAVAAQIHSNGGDAVAFRLDAEDIHQVQALFDTITSQNERITAVIHNVGGNMPSIFLRSPLSFFTQMWQSTFLSAYLVSQSCLKIFKDQNHGTLIFTGASASLRGKPFFAAFTMGKSALRAYALNLAQIYKSQGIHIAHVIIDGMVDGDRVNKALFGLGRLARLTRGTGGLNIDAIAENYWMLYQQTPQLWTHELDLRPYQEKF
>NC_016603.1|YP_004995838.1|1681617_1682301_-|short-chain-dehydrogenase/reductase-family-oxidoreductase
MLKKIFQKFQKKQGCVVVAGHDLQLIERDFVILDKNAHCPLHLYQVIHDSAVQNMQVHSVNDGVTAIHVNLVNADHLKCLLRYISKHGHTIELCVFQPSFSSSPNIEALSLEEIEHSWQTTGLSAVSIAQAVIKPMLKQQRGTLIFLGAPSNHSTHYDVLSQSMFASIRALSQSLAREFQPKGIHVSYCMIEKWEGQNQHFTSSLKQVCQHIYQQPDSAWSQELSLS
>NC_016603.1|YP_004995837.1|1680981_1681500_-|monofunctional-chorismate-mutase-precursor-(CM-F)
MSTLAAFMCFPPLAQASQYTQTARLVNERLSYMKDVAGYKAEQHLPIEDLTQEKKVLDQSLSEAESFGLNSETVKPFIVTQMNVAKSIQYRYRADWLSSPESNWKPQDLAEVRLKISSLNTELLKNIAVELKRNNNKAPHGCSYMWPVQHPQLKEADKKALCETLNKIKLKD
>NC_016603.1|YP_004995836.1|1678560_1680750_+|hypothetical-protein
MDRSSALSLPNFKFKVSTLSYAIGIACTYLALPAHAEDTSTSALPTITIKAQGNWLEEANAETVHKHAGARTIIDRKRLDETAATSLREALKQVPGVQAQDSSGTGGSDVSLNIGVRGLASRLSPRSTVLVDGIPLSFAPYGQPQLSLAPVSIGNIESVDVVRGAGSVRFGPQNVGGIINFATRSIPQDFSGTVSLTSEYASGTDQVKLSPNLFVGGTLDNGLGLALLYSGTKGNGYREANNKIDIDDVMLKSAYQFNDKDSVALNLHHYEGRGEMPEGLTQAQYAKNPYQSSGEKNYFAGRRTDVSLRYNHKDEKNNFEVLSYYIDSFRTSNLETTLANGQKRLDSAPRDYKVYAIEPRYSRIYELGNTQNEVTVGYRYLKEESSEFAGRTASYAAGSSVPDFAPRSSSEGGTKAHAVYIDNRMELGRWTITPGVRFESIETHNNFTGYNKGQPNTVYPKIDSDEFLPSLSLMYSANENWNIFANAGVSFGPQQYSQLARLEGTTATATTEGLHPEKSNNYEIGTKYLGNGLNAEFTVFYLDFDKELSLVRDAANNGIWTDLGATSHKGVETGISYDFGQLSDALEGLKVYGNYTFTKAVAEAGQFKDKDLPFYSRHVGNVGLGYTVDKWSLNADMFAQSKQHSPDLPDSNVYQTEETADGKYGDIPGYTTFALRTSYDLSSQVKGLKIAGGIKNVFDKQYFTRSTDSTGGKYVGLPRTFYLQTSFDF
>NC_016603.1|YP_004995835.1|1675828_1678063_-|putative-ferric-siderophore-receptor-protein
MEFIKSRKKIAKSAIASSLSIVATTAMAAQENSVALPLIHVQADAEVAQSLKVDKSANSKFVAPLLNTPKSVSVISKQLIEDTKVNTLSDALRTVPGITLGAGEGGNPNGDRPFIRGYNSESSMYVDGIRNSSSQNREMFAIEQVEVTKGSASSMGGAGSVGGSINMISKVAKKGDFLEGSVQAGTDNYQRITLDGNKDFGNGIAGRVVLMGHKNEKAGQSEGAEYKRVGIAPSITFGLDTPTRATLSYYYLRSDDTPDSGVPYNYDTAKKATVGKPVDVKQGIYYGLKGRDFQKQENHIGTFKVEHDLNENLTLANTVLYSKSKNDYLWTQPDDSKGNVANGKVWRRINSRITDTDIFTDQLSLRGKFNTGAIKHSFNVGAEYSDQESDKGSYTTTYPGYAGSTTGGFNSDCAINDAWCTSLTNPNSKDAWLGGRIANKATTTTTTKNTSVYLLDNIEFNPQWLLDLGVRWDKFDTEQVTNATGAKIESNKDFVTYNAGVTFKPTENGSIYASYATSANPVGVDGGDGSESIGQAYMDLKPEESQTIELGTKWNVLNEKLNLTAAIFRTEKQNTRIQVDSSTYTNGGDSKVDGIELSANGNITDKWAVSAGYTYLDSENTDPGPSCSRAGVCNPENAAKGKQLPNVPKNSATLWTTYKVLPQVTVGAGAFYADKVYGDAANTKWVPSYVRYDAMARYNVNKNVNLQLNLNNLSDKRYFTKAYASHYATEAEGRSAVLSVNFKY
>NC_016603.1|YP_004995834.1|1675050_1675734_-|putative-hydroxylase
MIHHIPNVLNKDQVQFFRQEMDKAEWVNGKVTAGTLSATVKHNQQLPEEDPLTHQLSNIILDALGKHPLFLSAAIPLDIIPPLFNRYENHESFGFHVDNSIRLIRGSNQRLRTDLSCTVFLSEPEEYEGGELVIEDTYGYHEIKLPAGDMILYPSTSLHEVTAITSGCRIASFFWVQSMIRDDAERHMLFNLDQTIQNLRMQLGDDHKEVLNLTNTYHNLIRKWAEV
>NC_016603.1|YP_004995833.1|1674613_1675009_+|transcriptional-regulator-(FurR-family)
MDYHQALMETGLSATPSRVTIFRFLHENDKGITAEEIYLLSQKKNLKISLATTYRTLAELEHRKLIKRVVLGKSNRGIYRPASNKISLNLINTKTGKSHPFEYDEKVEELLECLLKKIDEKALNIEVNIYK
>NC_016603.1|YP_004995832.1|1673702_1674218_+|hypothetical-protein
MLQYSDLLNFNWTPKEMNRFLLTFLSLNIGLFSSSIFAETNTFQTKQEYNRPRFNQHKSMLEVNANTQNYQLTEQQNSFNSPHSQNVDFFEIAKQYQENEAKPSSFTDETVNMSDHERSLYYIRHHDNVGIQREIRGQQFKSLKQQRDKGVISNDVYKEKVYKILNQPNFK
>NC_016603.1|YP_004995843.1|1686147_1687602_-|fimbrial-biogenesis-outer-membrane-usher-protein
MKYIIGVLCVAYFPTYSFAEQLLDYTNTAVPSVPKSVGNDNKYKHVGTNEPEQDLNFIHLFLNISINSNASEDLVAVKQSKDGKLYIRSSALKTLRLKMDEHIPDNQWVCINDLNGIQFKYLENEQSLNLKVPSNMLTGYSVDLSGQQVTNPHLLKMKPLNAAILNYSLYHTITNDENLFSGTAEGIFNSAIGNFSSGVLYNGSNENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISNSPDWGSSVRLAGFQWSSAYSQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSGPFDIKQLPFISGNEVTLVTTDATGQQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGAEASTDGLSNLGTGFAKNVLGIGVMNADIAASQYKDENGYSALLGLEGRISKNISFNTSYRKVFDNYFDLARVSQVRYLKDNQINPTAKYLITILT
>NC_016603.1|YP_004995844.1|1687611_1688316_-|fimbrial-chaperone-protein
MKKNIFIITGLFLSLSSSINAATIRLSPVNVEILSNQNAASISLYNQSNESADLQVRVFEWRQNAGQDQLIPTDEIVISPPFLKLQPSDSYNLRVVRINPEPISGEKTYRIIIDELPKPIDSRKAAQGVNVLLRSSLPVFVVNKDAITKLSWKIDVNQNTPSLNISNIGNRHALLNSLTLVDTTANKSYPIKVNTVNGYILAEKSKSYSISNFIYQPNHKYSVSLTVNGKKTTL
>NC_016603.1|YP_004995845.1|1688389_1688926_-|putative-biofilm-synthesis-protein
MAMKKTFIYLSAVVAGVFSLNAANAATATGTLTVRATVTNSCVLNTSATGTTTNAVLDFGTLSSLAGNVDADTTTTGGTSIKVLCNNTVPWTLSFDGGQNVLSTQRRMIGGATSNEYIPYNLFSDTGRATAIGIATTAYSGTGTGNVQTVNVYGRIPAGTTLPSAGSYVDSVTVTVTY
>NC_016603.1|YP_004995846.1|1689495_1692102_-|aminopeptidase-N
MNIAAQPPVQADQTVYLKDYQKPSFLVESINLDIQVYDDKTIVDSTLVMKRQTAGDLVLLGRDLELQSIQLNGQDITPAQYSLDSEQLVITDAPDEVILQTQVIIHPETNTQLEGLYKADELFVTQNEPEGFRKITFYPDRPDVLSVFTTRVEADKKYPVLLANGNLLETGEVGENRHFAIWQDPTKKPSYLFACVIGDLAVLKDRYTTSEGRDVALEIYAIEKDIPKCHIAMEALKHSMRWDEEHYGRAYDLDNYMIVAVSQFNMGAMENKGLNIFNTSCVLADEEYTTDAAIMRVQSVIAHEYFHNWTGNRITCRDWFQLCLKEGLTVFRDQSFSEDLQSAAVQRIDDVAVLKSHQFPEDAGPLSHPPRPDHFVEINNFYTATVYEKGAEINRMMSTLLGKEKYRKGTDEYFRRHDGQAVTVEDWVAALSAGSGVDLSAFLTWYNQPGTPKLEAKGEYDAAMQTYRLSFKQSLKAHPKYPNLKAVPIPVALALFNAKTGEQYTLHSDSLFVNDVKDGVYLFDQDEATIEFTDVTEQPVVSLLRNFSAPVNLVFDYTDAELAFLIQHETNGFNQWQATQTLLERILLEDHSADAYIQAIQSTLPELVGRDPLLASRLFDVPSEGYLGSRIDQNYAPADIHVKREALLNRLAQELGSFWKDTYLTLDPDLQKEFSLAMGVRALKNIMLMMMARQGDQTAFELAHVQYQNTGNMSERLGALRVLVWQNAPQAQEALADFYDRFKDEALSLDQWFMIQAANPNATTETIEYLTQHPDYDLTTPNRIRAVSGGLSNNPENTWGFGVAHFINLAEYLDEKNPILGSRLLQVLSRWYTLAEPQRTQVQQALQALQPKVKSKNVSETLNSMLSV
>NC_016603.1|YP_004995847.1|1692420_1692678_+|hypothetical-protein
MELKAHFHRLENIKAIHDLNAAGLDHHVIAVFLSAEGISMTAQEVTSIVNTYDALGKVKLPSKKVQALINAKKLGQNDESLPCPV
>NC_016603.1|YP_004995848.1|1692895_1693987_+|hypothetical-protein
MYWVDAEQFEQDIQFHECSHCQHRVFKDTKMTCHCETCTKQRKKLLQQTRLQEQRQFKSKEQPQRSLEQLSFLHKLFLLSLLDDYARDDVAHDEYIHWDQIKYHSITPNWSFQNYLIKQLHKDGILNAQDQADEPQCFYLNIRLDGYSDPSLFSVAQQLRHWFYENLSLGIPFRSADEVKDVLFQVLYQEIIQFMQFYCRTWGIQIAGSSNFQTFCYRLMDSLAIGQIYYLIQTALEYLYKQKALQPRNEKFINTNLLKKTLEQYRERALAEKWETSMLPRPHNIPYSKMSYILLNRFLGYDEQIFVQPVWKAWRKIEPRLNFYSVKRCMHCGSNDLSVDYDAADYVSLICQRCKHQDHYFTH
>NC_016603.1|YP_004995849.1|1694022_1694850_+|hydoxyethylthiazole-kinase
MTSASTLIEQVIDAWQNMQAKTPLVQCITNSVAANYTANVLLASGASPAMIDNPYEAESFTKISSALSINLGTPTSEQMQAMQISAKTAQLNGIPWVLDPVGYGPILAWRSQMTDELLQFKPSVIRGNASEISTLAGNQVQSKGVDSTLSSDQAYQQAYALLAHADCIAISGESDYILSKELDIIIQVNGGSPLQPKITATGCALGALIAAYSAVTTPTIAALSAHVHFAIAGKLAANQAQTMGSFSTIFMDYIHMLDDNLIEQYADIKLLEIQA
>NC_016603.1|YP_004995850.1|1694972_1695338_-|putative-5-carboxymethyl-2-hydroxymuconate-delta-isomerase
MAMPHVVVDYSENLTGLNAKQLLEEINTTLIETELFSPEDIKSRARKDDVFLIGLGAEQAYIHAKVYILSGRTAEQKQLMGEQLLAALSNKKYLQQEFNKEIQLCVELVDMPREDYFKQVV
>NC_016603.1|YP_004995851.1|1695375_1697088_-|exonuclease-V-subunit-alpha
MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYIQYLKARKVPVAITASTGIAATHMNGMTIHTWAGIGIKDLLTDDDLKRMKERKYLKEHLENAQVLVIDEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGRNGEANRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNAIRAQNIQADHLQALRQSRAHDIGETFTRLYTHNMDVDNINYQHLNEIDNEGHQFNAVLDGNEKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEEDDENGLLPKVKLTDGTTLLVAPETWSVENEAGKVIASFQQIPLRLAWAITIHKSQGMTLEAAEINLMNTFEKGQGYVALSRLKSLTGLKLLGINEQALELDSLAVKADRRFQELSKEAEDNFADVDLTAQHKAFIRHCGGTLNETEISRNEKKLAKGGKQNYATATLDETRVLFEEGYEIEDIAHERGLTPATIINHLARLHKEQKLDISVAHPGEEVVEEIRKIYKKLKKRQNPDHFSDDGSIKLRPIVEATSPRMGYDQVRLALLFIE
>NC_016603.1|YP_004995852.1|1697318_1698491_+|putative-alcohol-dehydrogenase
MAFKNIADQTNGFYIPCVSLFGPGCAKEIGTKAQNLGAKKALIVTDEGLFKFGVADLIANYLTEAGVASHIFPGAEPNPTDINVHNGVNAYNDNGCDFIVSLGGGSSHDCAKGIGLVTAGGGHIRDYEGIDKSKVPMTPLIAVNTTAGTASEMTRFCIITNTDTHVKMAIVDWRCTPLIAIDDPKLMIAKPAGLTAATGMDALTHAVEAYVSTAANPITDACAEKAITMISQWLQPAVANGENIEARDAMSYAQYLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAILLPHVCEFNLIACPDRYAKIAELMGVNTHGLTVTEAAYAAIDAIRKLSSSIGIPSGLTELGVKTEDLAVMADNAQKDACMLTNPRKANHAQVVEIFKAAL

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Crispr_ID: NC_016603_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016603_2

2447750-2447835

Orphan

Consensus_repeat	Method
CCAAAATTAAAAGATTATCAATCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016603_2

>merge|NC_016603|2|2447750-2447835|CRISPRCasFinder
CCAAAATTAAAAGATTATCAATCTTCTCTTATCTACGCGCAGTTTCACTGCTTGTCTTGCACCAAAATTAAAAGATTATCAATCTT

>NC_016603|2|2|2447750-2447835|CRISPRCasFinder
CCAAAATTAAAAGATTATCAATCTT	CTCTTATCTACGCGCAGTTTCACTGCTTGTCTTGCA
CCAAAATTAAAAGATTATCAATCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016603.1\|YP_004996522.1\|2442195_2444784_+\|putative-bifunctional-protein	unknown	unknown	gnl\|CDD\|99797
NC_016603.1\|YP_004996520.1\|2439285_2441364_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130727
NC_016603.1\|YP_004996535.1\|2460254_2460638_-\|twitching-motility-protein	unknown	unknown	gnl\|CDD\|381093
NC_016603.1\|YP_004996528.1\|2449661_2450711_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NC_016603.1\|YP_004996518.1\|2437030_2437822_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NC_016603.1\|YP_004996524.1\|2447172_2447676_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341130
NC_016603.1\|YP_004996519.1\|2437847_2439062_-\|putative-bicyclomycin/multidrug-transport-protein-(MFS-superfamily)	unknown	unknown	gnl\|CDD\|340878
NC_016603.1\|YP_004996515.1\|2434501_2435977_-\|putative-amino-acid-transport-protein	unknown	unknown	gnl\|CDD\|376500
NC_016603.1\|YP_004996531.1\|2452498_2457004_-\|component-of-chemotactic-signal-transduction-system	unknown	unknown	gnl\|CDD\|223716
NC_016603.1\|YP_004996516.1\|2436076_2436217_-\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004996521.1\|2441464_2442040_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379303
NC_016603.1\|YP_004996517.1\|2436400_2436604_-\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004996530.1\|2452031_2452463_-\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004996532.1\|2457151_2459230_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_016603.1\|YP_004996523.1\|2444898_2445684_+\|putative-SanA-protein	unknown	unknown	gnl\|CDD\|99750
NC_016603.1\|YP_004996529.1\|2450846_2451728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366166
NC_016603.1\|YP_004996534.1\|2459869_2460232_-\|twitching-motility-protein	unknown	unknown	gnl\|CDD\|381093
NC_016603.1\|YP_004996527.1\|2449304_2449448_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137533
NC_016603.1\|YP_004996533.1\|2459272_2459809_-\|twitching-motility-protein	unknown	unknown	gnl\|CDD\|223905
NC_016603.1\|YP_004996526.1\|2448299_2449181_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378094

Protein	Function_ID	Function_description	E-value
NC_016603.1\|YP_004996522.1\|2442195_2444784_+\|putative-bifunctional-protein	gnl\|CDD\|99797	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.51262e-126
NC_016603.1\|YP_004996520.1\|2439285_2441364_+\|hypothetical-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NC_016603.1\|YP_004996535.1\|2460254_2460638_-\|twitching-motility-protein	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.27194e-36
NC_016603.1\|YP_004996528.1\|2449661_2450711_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NC_016603.1\|YP_004996518.1\|2437030_2437822_+\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	4.89434e-35
NC_016603.1\|YP_004996524.1\|2447172_2447676_-\|hypothetical-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	9.14583e-26
NC_016603.1\|YP_004996519.1\|2437847_2439062_-\|putative-bicyclomycin/multidrug-transport-protein-(MFS-superfamily)	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.15391e-96
NC_016603.1\|YP_004996515.1\|2434501_2435977_-\|putative-amino-acid-transport-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NC_016603.1\|YP_004996531.1\|2452498_2457004_-\|component-of-chemotactic-signal-transduction-system	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.81547e-114
NC_016603.1\|YP_004996521.1\|2441464_2442040_+\|hypothetical-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	0.00806876
NC_016603.1\|YP_004996532.1\|2457151_2459230_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.56616e-70
NC_016603.1\|YP_004996523.1\|2444898_2445684_+\|putative-SanA-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.39252e-41
NC_016603.1\|YP_004996529.1\|2450846_2451728_-\|hypothetical-protein	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.75275e-14
NC_016603.1\|YP_004996534.1\|2459869_2460232_-\|twitching-motility-protein	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.37809e-36
NC_016603.1\|YP_004996527.1\|2449304_2449448_+\|hypothetical-protein	gnl\|CDD\|137533	PRK09810, PRK09810, lipoprotein antitoxin entericidin A.	1.5313e-06
NC_016603.1\|YP_004996533.1\|2459272_2459809_-\|twitching-motility-protein	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	5.64503e-30
NC_016603.1\|YP_004996526.1\|2448299_2449181_+\|hypothetical-protein	gnl\|CDD\|378094	pfam08907, DUF1853, Domain of unknown function (DUF1853). This family of proteins are functionally uncharacterized.	1.63676e-39

>NC_016603.1|YP_004996524.1|2447172_2447676_-|hypothetical-protein
MSQFKLEEADVLIDLANQTLTLPKHNKFYVISTGKNGIGEQENTGRTPRGWHRVAKKIGAQAPQNAVFIARKPTEEVYSSELAAQFPERDWILSRILWLDGLEEGFNKGDGHDTMQRYIYIHGTPDKEPMGVPMSHGCIRMRNEEIIELFDLVAEDALVYLSEQSLT
>NC_016603.1|YP_004996523.1|2444898_2445684_+|putative-SanA-protein
MQVSKWIRIFLAIIGSILFLDGLVLICLNKINVGTVIPLILGAFFCLYSLFYYHLERFFFYHYRLHTLWRFGWLCFWIWLIGLGYFFSFIKENKDTSNNIPPVKAIIVLGSGVENGQPSTILAKRLDTAAPLALKQQQAQIVLTGGLDFSEKESEALVMSRYLEQKYHIARDQMILEDKSTSTELNLKNSKPLLEQHHITLDQPIAIVTSDFHIPRAIAIAKKQGYTQVYGIAAETPLATRYNAWLREYFAYASGWLLNEY
>NC_016603.1|YP_004996522.1|2442195_2444784_+|putative-bifunctional-protein
MFKKILFQIHWFLGITAGLILSIMGVTGAIYSYDQQILKWVNSDSYVVQAENTPKLTPAQLYQHFNTTQPEIKINSITIAKDPTSSSIVNIEKEGERRGYNMMVNPYNAEILPDVKGRKLLLLIQQIHRNLTAGEVGKQITGACALMLIYFVLSGLYLRWPKKHSVRQWLAVKPKLKGRNFIWDLHAVVGTWVIVFYLLFACTGLYWSYDWWRSGMFKVMGVEQPKRQDHGAAPQNQNRGIQHGKQSDRNNDKKSEPQLDNTQLITALNQTWSGFNSQVGRDYSTLTLSLPKKDDGKIELSFVDATPQHERARNQAIYNYQTGNIEKMELYEDKKLNQKIMSSMLPVHRGSFFGPIYQFVAMLASLAMPLFLVTGWMLYLKRRKQKKLTQAARQSLAGQYIDPNAEPWLITYATQTGVAEQLAWSTATSLQEAHQPVQVKPVQQLTQTDLEQHQQVLFVISTYGTGDAPDLATSFAKKLLKLNVDLKHINYAVLALGSKEYPDTYCSFGHAVDAWLKANGAHALFNTIEVDNANPSDIQKWNQSLAKATKLDLHAVNLEKVFDSWTLQQRDLLNPNSLGQPAYNIELKANHEAIWQAGDIAEIQPGNSPERIHAFLQKHHILKNLKVDSLQISIEKALWNKDLTGEIEPFANLDHLLEQLPTLPTREYSIASIPSQQVLRLVVRQQYDASGNLGLGSGWLTQHTQVNNEIALRIRTNESFHLIDDNRPIICIGNGTGIAGLMSLLHTRTRHDYTENWLIFGERQRACDFFYESTIEAWKTTGMLKRLDLAFSRDQEQRMYVQDVIRQNAAELVSWVERGAVLYVCGSIDGMASGVDQALIEILGEEQVDDLRQQGRYRRDVY
>NC_016603.1|YP_004996521.1|2441464_2442040_+|hypothetical-protein
MTAKTLYAYTLQPVPYDVSEAEQRNAQLLIWRSTNKISTKIWAIMGVILALAILGLIFIKNYSTVFCWVAIVAVVLYYLGRKYGLEWYVKRKMNEFPVQEIKGIRLGVQPHGIVMRQQMGLQEGVGTIGWKNIYEWYNTPDFILVNFKVKDPKGQEQQGAYILPKRMDSKNFSFNTIRTHLKESVGEPKTL
>NC_016603.1|YP_004996520.1|2439285_2441364_+|hypothetical-protein
MPYFLGYQLATIPLTLGVVAAGLSDIDDRFSVRIMNLIYTYIGFFVTAASVQLLFPYPMAFALGLIASCIGWILLGSLGRRYATISYGCLVVSVYTMLGVHLFDHWYIQPALLVAGAAWYGLIATISFLLFPVRQLQDKLAASYASLGDFLFAKSNLFDVDMTPASYQQSMIELSLENGKLITIFNDLKTALLTRLKGDRGQKDTRRSLHYYFVAQDIHERADSAHIDYQKLAKIFQHSDILFRFQRILAVQGKACQELNECILQRKPYNHNKRFKQSFENLRLSLEKLRRDQHYDLLWVNALFALYQNLKSIDSQLLNLETEQHIQSDKVKQAENQLKDDDLQGWNDIVIRIKQNLTPESVLFRHAIRVSIVLFIGYVLIQMTNIEYGYWIMLTALFVSQPNFNATKRRLRLRIVGTLVGIIVGLTIVFLVPSVEGQLLMLILSGVLFFELRSKQYAQATAFITILALINFNLDGSAMAAAIPRFVDTLIGCALAWFGVTFIWPDWKFRRLPRNIRRSLQAQCNYLAEVVKQYHEGRNHALNYRIVRRAAHNTDAEVASLISTLATEPDFDPTRKSDIFEFLCLNHTFLSYIAALGAHRESIQDQAVLKLLDQALDDIQGALLRDEMPDLTAQNMLQTIRQRLSQNNEEDQKSLIILQQLSLMLGVLNRFSMLKQRLSHDLDNDASELASL
>NC_016603.1|YP_004996519.1|2437847_2439062_-|putative-bicyclomycin/multidrug-transport-protein-(MFS-superfamily)
MSEQTAQRQYSIGWIMLLALLTALGPLSIDMYLPALPQMAHDFGVSTQMVANTLPAYFFGLAIGQLVYGPLSDRIGRKKPLYFGLALYAVASLFCVMATNEWSLIAARILQALGGCVGVVMARAAIRDKLDVQGSAQAFSSMMIVMGLAPILAPMIGAWILIWFPWQAIFIALSIVGALCWLCVHFFFKETLANDKRLKLSLYQVVTLYGAIFKDASFRLPMFAGCLTGAALFCYISSAPAVFMDQYGLNQQEFAYVFGLNAFGIMLMSSLNKHLTTRVEITKRLKSGSLVQVTGAIIVFIAGLIPAAPLWLVMVGLFLAISGIGLTGPNAMALAMSKQGARAGTASAIMGSMQFACGLLGGVLLNFLIWSASLNMGVMMVLFTLSGFIVVLKATQQVKTKPFS
>NC_016603.1|YP_004996518.1|2437030_2437822_+|nitroreductase
MLINEVLSKHEIKLQKSMKYLRKDIGVRMNLEQVRLVDEAITSRHSVRAFLNTPIEPEVIKDILRVASRAPSGTNTQPWKVYVVTGKKRDEMVERVCAAQIEVSKNPELAEQYKETFAYYPEKWISPFIDRRRENGWGLYGLLEIKKGEKEKMAEQQLRNFKLFDAPVGLFFTVNKTMGIGSKMDIAMMIQNVMVAAKARGLDTCPQAAWNHFHPIVLDIVGASDDEELVCAIALGHADPNHIVNTFITPREPVENFTVFLDE
>NC_016603.1|YP_004996517.1|2436400_2436604_-|hypothetical-protein
MSLPLINKQFMKQGLAITIATMKMNVTHATTEPQEIQQLGTDLNALFSNQREKGADSRVMAMARYSL
>NC_016603.1|YP_004996516.1|2436076_2436217_-|hypothetical-protein
MFSGAMNSFYLKGAFSHATFKGLVLGIMLLKLVTLIAIQVTLKVFP
>NC_016603.1|YP_004996515.1|2434501_2435977_-|putative-amino-acid-transport-protein
MNEQLNATLMSWVQFFNDPLWDFLVIFLLAVGIFYTVLTGAVQIRMFLQSIRVMKSSRTEGEDEHGLTPFQAFVTGLASRVGVGNIAGVAIAIAIGGPGAVFWMWVTAVLGMSSAFIESTLAQLFKVRDNKTKQFRGGPAYYITQGLRSKTFGVVFALALIFTYGFVFNSVQINAIANASSHAWGWDKANLIAHLGGVDLEISWVGLALVVMVALAIFGGIKRIAKFAEMFVPLKAGLYLAVALYIAISNYAILPDILKLIVTEAFQFNAAAGGFFGAAVSMAMMQGIKRGLFSNEAGMGSAPNAAAASDVKHPVNQGLVQMLGVFVDTFIVCTSTAIIILVSGVYQDAGFVGVELTQRALETQVGHWGSDFLAVLLFLFCYSAVLGNYAYAEGNVQFINNNPKVMFIFRIFVLVMVYFGAIGSVPLVWSMADLFMGIMATINLIAILLLTPMARTLLKDYREQLKRGIKEPEFKIDKYPELKKKVDSDIW
>NC_016603.1|YP_004996526.1|2448299_2449181_+|hypothetical-protein
MNIASVKTSYFEPWLQFQHPIVRQLAFCIASPNLLCQLPKSFSIQHDFKLHPTEVWEEHFQNYLPRLKELDQSPDPLIQFLSQLKSTRLGLRFENLLWFWLQEDNYHPYQLLGHSIQKIDGAKTLGELDFLILNKETQQIEHWEVALKYYLGEADLHLEQWIGLNRQDTLSKKLYHFTNKQFQFSEALNFRIQQRFAVLKGQLYLPLQLNFQKSPPDWINLKRRLGYWGTTIPHSSFYRLERHEWLCPNKEQTSNQAHWWTDGLYCKNSKEILFYMFRHPSYLNIKPQLQKLS
>NC_016603.1|YP_004996527.1|2449304_2449448_+|hypothetical-protein
MMKKVLAASVMVAVILTGCNTFKGFGQDVSKAGDAVTNTAEKTQDKM
>NC_016603.1|YP_004996528.1|2449661_2450711_+|succinyl-diaminopimelate-desuccinylase
MADRLAKIGFHIEPMRFGEVDNLWARRGTEEPVFCFAGHTDVVPTGKLEAWNSDPFVPEIRDGKLYGRGSADMKTALAAMVVASERFVAKHPDHKGSIAFLITSDEEGPAINGTVKVIETLEKRNEKMTWCLVGEPSSTHKLGDIVKNGRRGSLNAVLKVQGKQGHVAYPHLARNPIHEASPALAELCQTVWDNGNEYFPATSFQISNIHAGTGATNVIPGALEVTFNFRYSTEVTAEQLKQRVHEILDKHGLQYEIVWNLSGLPFLTPVGELVNAAQTAILNVTGTETELSTSGGTSDGRFIAPTGAQVLELGVLNATIHQINEHVDVQDLDPLTDIYEQILENLLAK
>NC_016603.1|YP_004996529.1|2450846_2451728_-|hypothetical-protein
MSIHKELHILKTDDHGEFALWRISKRNNSLIKKEAIFLSHGAFSDKNVCIGIADYLANHGYICFILEWRGHGTSPKTDIPFNFETVALYEYKTAFHYIHHHFNITSLHCVTHSGGGLCLTMFLINYPEYLKNIQSITFIACQAFGAVNNSFDFIKLFSAKLVVKGLGQIPASKFKLGRINETYYTMRPWFNWNLKENFISEFKDIDYKKFMSSIRVPIYSICGTGDKFIAPAKGCYKYLQAFENENNIFREFGYSNSNLENYSHSRIVLSQNAAKEVWPTILQWIDKNSKAAF
>NC_016603.1|YP_004996530.1|2452031_2452463_-|hypothetical-protein
MDQQELQHLITVSTGFIDAYIIECHQQVPMLLPQNIVLSAMDVKNGIKHIEWHDVKLPVYSIHNEIDSRAVALVIESEDISQRFALMCKSMPVSVRLRISEVVDENEDIQESLKHPTVFKYVRMDNQRYHVPNLQYIQDSLHL
>NC_016603.1|YP_004996531.1|2452498_2457004_-|component-of-chemotactic-signal-transduction-system
MKEILKTLTEAMMLPEDSYSQQDDEFLEIFVEEIEEIFVELQSLIHEWMQSENVATLTEIRRHFHTLKGSGRMIGAKSSAELAWTVEDTLNRVINQSLGLTPNIQRYVQLVFKFYFFKLVDDFKSKKNHTLDFRPLILLGQQLQQQQSIEPALDELLLLSDILTAETQTGLETNDLEPESTEVLTISTSEVAIETEQTLAETLILFMEEAEEHLATIDQFLEKEIHQHESYNALIRALHTLRGSSAMAHVEPIFDASTKVEHLFKILLQEELSSHSEEISLLRDYRQFIRNSLDLLAAHCSTEQLESDLQKFNQVWDAYMEQHGEHSSPLMPPHGLVSQLLQLDVAELLDAELDFEKGIRTEFPHYLERLSEQADVLLQHTQSQAMIGLYEYTNQLKESYDILLDRPDLLQSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNVLDELKLYTQYIPNLNSESLETHQDVFEPLFNAEVEQTANDPLIENVFTDQVTIGQSVQLDRQFISSEHINRHFDPDLLDIFLEEADELLEGMDTDLNLWVNDQENFAALNNLMRYLHTLKGGANMIQATYIGLIAHELESIYERLIQKQLIASSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAGQVFDSHIKESKTEPETYVIPELNFEVLQQEAINNTELNLSELTSASEQIAKSNNQLVEQTELQVLYADHDHTESIPDQDINTVVEQTFMEEAAELLEMADHLLKQWFEQRTNRSILLQLQRAVHSLKGGSRMLGLETVQAIAYQLENAFEQFALHHFSSNIYDNLLESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTDLFSTEPVMSFVQGDGTEPPPMMGDWEQAQRLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLAEMELAIQRLADQLRRMEGELETQIIAKHGIENSRYTEFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTEGLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTSTALNRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEDRAQREQAQKPETGRIELNIHRQGTDVVVTFKDDGQGIDIEKVRQKALMSGLINPEQVLEHQDILQLIFHPGLSTADQVTQISGRGVGLDVVQSDIKALGGHVSVDSVYGQGTVFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPASLEQYFGSAQELFEFENKRYPLRYLSEFVGNQPIPRLSGMMYSLPVLMIKANNGQTVALLIDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHKSLNETIYRKRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDALFMTFEGGLA
>NC_016603.1|YP_004996532.1|2457151_2459230_-|methyl-accepting-chemotaxis-protein
MGFKLKKKGSSRVASEKSGVNFIATIQSKIEQFASLFGESEKSKPILYAALLCFVLALVSLAYLFYNVPRHNQLIRSLGELRLLSQTISKQATEATESGSQEAITKLQQSQKDFNENLLEIENIHGKSTDEYQKVQVMWTELSKNIDLISAHQKVLNQLYDTNISISETVPEIQAEYNLMVDQMARQGLPSSQVIIAKNQVFIAERILRSINSVLSGTDGNVSTSDFGVDIDTFGTYLNAELNGNAELGVDRIADPALRESLESIKSEYDKVLKSAAATVLKNGNQIVNVRQASSQIFSKSDVMLDNLGHLSDVARKNWLTLLLGAVLISSLAGLIFSVFKLITLRSVMDKQRVTRLQDEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSSNASESAEVAERSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGDLANLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD
>NC_016603.1|YP_004996533.1|2459272_2459809_-|twitching-motility-protein
MAANGFIELLRLSKRGNKNYASVQNEAQRWSGIAFEMRGQYFVAPLGEVSEVIYPPKYTPVPNTQSWVKGLANIRGRLLSVSDLAHFILGQRSSFSSTQKVLCISHRDQYVGLVVDQVLGIQHFNKKSFFSQSLDLEENLKEYCQGYFHQHNQHWHVFLFSRLLQNPHYMNASTKFIN
>NC_016603.1|YP_004996534.1|2459869_2460232_-|twitching-motility-protein
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEENQLIDVIKQFLN
>NC_016603.1|YP_004996535.1|2460254_2460638_-|twitching-motility-protein
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

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Crispr_ID: NC_016603_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016603_3

3277847-3278017

Orphan

Consensus_repeat	Method
AATTTGGAGCGGGAAACGAGACTCGAACTCCAACTGAGCTATTCCCGCAT	PILER-CR

2 spacers

The CRISPR arrays of NC_016603_3

>merge|NC_016603|3|3277847-3278017|PILER-CR
AATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTATGCTCTACCAACTGAGCTATTCCCGCATATATAAGCAGTTTTTACTAAAACTTTCTCAAAAAAAACCAATTTGGAGCGGGAAACGAGACTCGAACTCCAACTGAGCTATTCCCGCGT

>NC_016603|3|1|3277847-3278017|PILER-CR
AATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAG	GTTATGCTCTACCAACTGAGCTATTCCCGCA
TATATAAGCAGTTTTTACTAAAACTTTCTCAAAAAAAACCAATTTGGAGC	GGGAAACGAGACTCGAACTCCAACTGAGCTATTCCCGCG
T

Protein	Signature genes	Signature genes Name	Protein_function
NC_016603.1\|YP_004997314.1\|3277021_3277687_+\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225002
NC_016603.1\|YP_004997317.1\|3279034_3279877_+\|putative-ATPase-involved-in-chromosome-partitioning-(ParA-family-ATPase)	unknown	unknown	gnl\|CDD\|224113
NC_016603.1\|YP_004997313.1\|3275067_3276933_+\|putative-bifunctional-protein	unknown	unknown	gnl\|CDD\|187573
NC_016603.1\|YP_004997323.1\|3284030_3285599_+\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_016603.1\|YP_004997316.1\|3278565_3278958_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377264
NC_016603.1\|YP_004997308.1\|3263985_3265761_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NC_016603.1\|YP_004997315.1\|3278245_3278554_+\|putative-activator-of-morphogenic-pathway-(BolA),-important-in-general-stress-response	unknown	unknown	gnl\|CDD\|376601
NC_016603.1\|YP_004997311.1\|3269998_3273745_+\|exporter-of-the-RND-superfamily	unknown	unknown	gnl\|CDD\|223964
NC_016603.1\|YP_004997309.1\|3265757_3266018_+\|putative-Phosphopantetheine-binding-protein	unknown	unknown	gnl\|CDD\|214834
NC_016603.1\|YP_004997318.1\|3279887_3280274_+\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004997320.1\|3281087_3281729_-\|putative-integral-membrane-protein-(DedA)	unknown	unknown	gnl\|CDD\|182775
NC_016603.1\|YP_004997319.1\|3280488_3281079_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224199
NC_016603.1\|YP_004997324.1\|3285663_3286452_+\|streptomycin-3''-adenylyltransferase	unknown	unknown	gnl\|CDD\|184296
NC_016603.1\|YP_004997321.1\|3281881_3282361_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225168
NC_016603.1\|YP_004997305.1\|3259431_3259848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|292862
NC_016603.1\|YP_004997310.1\|3266014_3269974_+\|non-ribosomal-peptide-synthetase,-terminal-component	unknown	unknown	gnl\|CDD\|341281
NC_016603.1\|YP_004997312.1\|3273741_3275013_+\|hypothetical-protein	unknown	unknown	unknown
NC_016603.1\|YP_004997307.1\|3262045_3263935_+\|beta-ketoacyl-synthase	unknown	unknown	gnl\|CDD\|341254
NC_016603.1\|YP_004997306.1\|3260629_3261346_+\|transcriptional-activator-of-quorum-sensing-autoinducer-synthesis-transcription-regulator-protein	unknown	unknown	gnl\|CDD\|377050
NC_016603.1\|YP_004997322.1\|3282427_3283645_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226834

Protein	Function_ID	Function_description	E-value
NC_016603.1\|YP_004997314.1\|3277021_3277687_+\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	1.03453e-28
NC_016603.1\|YP_004997317.1\|3279034_3279877_+\|putative-ATPase-involved-in-chromosome-partitioning-(ParA-family-ATPase)	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.25653e-47
NC_016603.1\|YP_004997313.1\|3275067_3276933_+\|putative-bifunctional-protein	gnl\|CDD\|187573	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs. This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.0237e-29
NC_016603.1\|YP_004997323.1\|3284030_3285599_+\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_016603.1\|YP_004997316.1\|3278565_3278958_+\|hypothetical-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	1.92851e-09
NC_016603.1\|YP_004997308.1\|3263985_3265761_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	9.52818e-44
NC_016603.1\|YP_004997315.1\|3278245_3278554_+\|putative-activator-of-morphogenic-pathway-(BolA),-important-in-general-stress-response	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.05398e-30
NC_016603.1\|YP_004997320.1\|3281087_3281729_-\|putative-integral-membrane-protein-(DedA)	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	4.29441e-86
NC_016603.1\|YP_004997309.1\|3265757_3266018_+\|putative-Phosphopantetheine-binding-protein	gnl\|CDD\|214834	smart00823, PKS_PP, Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups.	2.45577e-19
NC_016603.1\|YP_004997319.1\|3280488_3281079_+\|hypothetical-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.32759e-06
NC_016603.1\|YP_004997324.1\|3285663_3286452_+\|streptomycin-3''-adenylyltransferase	gnl\|CDD\|184296	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional.	1.04515e-62
NC_016603.1\|YP_004997321.1\|3281881_3282361_+\|hypothetical-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.77689e-22
NC_016603.1\|YP_004997305.1\|3259431_3259848_-\|hypothetical-protein	gnl\|CDD\|292862	pfam16245, DUF4902, Domain of unknown function (DUF4902). A family of uncharacterized proteins around 140 residues in length and found in various Acidithiobacillacea and Acinetobacter species. It may be functional in extreme acidophile Acidithiobacillus ferrooxidans, but the specific function of this family is unknown.	7.4827e-21
NC_016603.1\|YP_004997310.1\|3266014_3269974_+\|non-ribosomal-peptide-synthetase,-terminal-component	gnl\|CDD\|341281	cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity.	0
NC_016603.1\|YP_004997311.1\|3269998_3273745_+\|exporter-of-the-RND-superfamily	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	1.93173e-90
NC_016603.1\|YP_004997307.1\|3262045_3263935_+\|beta-ketoacyl-synthase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NC_016603.1\|YP_004997306.1\|3260629_3261346_+\|transcriptional-activator-of-quorum-sensing-autoinducer-synthesis-transcription-regulator-protein	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	8.11221e-41
NC_016603.1\|YP_004997322.1\|3282427_3283645_-\|hypothetical-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	1.35355e-07

>NC_016603.1|YP_004997314.1|3277021_3277687_+|4'-phosphopantetheinyl-transferase
MAEKLRYDQYLPQAARLFLISRMLTKSVLADKLGISPHEVNIQLQPNGKPFVQGNKGIYFNLSHSADVIVLAVTEEGEIGVDVERVDREFDWMRVDSVLAPSEIEWIQENERIDPSTVYQRFFQIWTLKESYIKCTGEGMSRHLKKLNFHVLAEHIEFLDSTRDIQKTEEYYFQSYVYDHNYIFSICLQQRCSLERFTLDCFQSLPFISTHRITPMPCTYS
>NC_016603.1|YP_004997313.1|3275067_3276933_+|putative-bifunctional-protein
MNNLNNAKKDNFSRKTILVTGAAGFIGSRLIVELLREGHQVIAALRNTATKKEKLLGFIATQGLTDPSISFVEYDLSHDFKLDSLLTDAQTKIHVVYHLAASFNWGISKAEAQRTNVKSGLALIEWAATLKQLERFIWIGGYRVATPPQESADDLYYKYGGYEASKILGHQAFIETCKRLNVPWTAINPATVIDGFYTYGDMQYIGIAEMIDKLYQGRLLALPGGSDTFLPLCNMQYIVSFLIRTISFPETIAQEYVLLDPATPKCHRLVHLAAEHLGVSAPYLQIPKVLLEKLPEVLLGGSKEQLAFISNENYHVAETEKIAVKMGIADLINTSPYFSRWIDRLVLTRFGRMQAPTPSCFSYQNRYWAEIYTKQPVGSEKSSALFLHGIPFDSTCWFPIINKITYDQVAMMDLPGLGRSGSYEVMEDNNHQFIDNAAKLLAPNSVVIAHSLGCLFALSLAQKYPNKVARLILISPYFVQAQAAKIFQIQTISNLIFRFVSKDKIAKNLHPDGQKNLSVGYAMDSLRRVSVAKHISEYMHRISLPQQRVSQTALLNELGSKVEIIVGEKDPIVTTISPNIPVHIITGAGHNPHVTHVEAVYDYLTPVLTKYISTTAQLSDV
>NC_016603.1|YP_004997312.1|3273741_3275013_+|hypothetical-protein
MTQGAYWVFACCSSFMLLQHAYADDSEMSFVSQNSARLDVWSSDRDLSSLKNIGQASFWSNGTLKFNPEFKIHYDINIGDETDHTVNPDQVSKVNRNLRELYASYNWDQTFYLDVGRQIVVWGRADGINPTDNLSPRDYTRLVPDETDQRLGNDALKLTYIPESGTNKWTALWYPRSRSDVIPLRQIAGVQYDIDRKSRPAFAVRWDYSVDGLDVGASYFSGLDHMPDLSLQSLSQTGATLQLKNNPMSVYGFDFSYNHNDIVWRGEAAYTQTDSEGSEDLTHKKNNLTVVMGSELALKNSTVSLVGVYKHTEDLRSADSLTNPLLREVYRYQQTISNQYERDQYGAMLRYALNLLNDNLKLEVTGFYFAPEPNEMLRVRINYNLNDHWQLNAGGDRFWGRNDTVLGQFRDNSLVYAQVRYNF
>NC_016603.1|YP_004997311.1|3269998_3273745_+|exporter-of-the-RND-superfamily
MVTIEHAFLIPAEIDKVFKYLANPGNDASWQLSCKHSELLDTTPLVGSKYELNLSFASRELAFKGEITHLVPNELYAFQVLEGPFYYKGTYRFKPHPEGTWIEWLFEAEPGGFFGVFPNALLKKMVLAQFKKDLANLQALAQKGGTYEAVSTQTQEIEEPSVEVKKPLQEIEEPSPEIKKPLQEIKESSQEIEKPLQKTHLVMEQYARWILSHRRIVLTVVMLLTIALAYLASGVKIIIDPGALAPNGHPYITSTKLIEKKFGSKYMVVIGITPKQGDIYQPQVLEKVKRITEEVDNAPGVVRSTMMSLAARQAKGIMANSEGFDAKKLLPTSSVTQDDIDQLKKVLAMNPTYMNSVVSKDQRTAAILLELEESPEGFQKMMAPINKIVESEQSKDMTLSVGGNPVYLDKAEDYSKRINILFPIAVLVIGLLHFEAFRSKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIAAGHAVQLLKRYYEDFDRLIAQGMEPKAANSEAVVQSLVRVGPVMVLAGGIAAAGFFSLLTFNIPTIRSFGIFTGIGIISTLIIEMTFIPALRSMLPPPSVTKVKRKGLPIWDWIPNRIGDAILSVRPRMILMTAIATIGVFLAIGTSRIVVDNDSRNFFSRDLPMQQDDRFLNQSLGGTNSLYIMVDTKVRDGIENPEILKAIDNTEKFANSIPEVGKTISIVDYIKRMNQAMNADQPQAFQVPATKDVVAQYLLLYSMSGEPTDFESYIDTTQRYAKITILMKTGSNHRIKEILESLKTYMAAQLGDKAVVSFGGDVTQTIALTETMVHGKLMNILQISFAVFFISALVFRSISAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSLISAMAVGIGADYAIYFLYRLREILREEGGDIKDAIRKTLSTAGKASLFVATAVAGGYGVLSLSQGFHVHQWLAMFIVIAMLFSVFATLIMVPTMILILKPRFIFSSNKKSIPVAQTVVTSLLLGTALTFSLPKTSHADEVQDIVNRSDDASKFLTSSASAKFILTSKNGEQRVRLTKNMTKLAGNTQNNMRLTEFISPADVQGTTTLLIENSKGSDSMFVYLPALKKVRRLSSANKGDAFIGTDFSYGDVLGYKLSDWKYTKLADGKFNGKDCYMIEATPINNTVKSDFGYSKRRMCILKDNFVTATIDIWDTAGKPLKHIEFTDIRPYGKVKPRWQAMKSMAKNLQTQHMTQVIVNDFVAEKTLSDKIFSPQSLEK
>NC_016603.1|YP_004997310.1|3266014_3269974_+|non-ribosomal-peptide-synthetase,-terminal-component
MNNIASLEPKILSRHAISAEQLGIWYIQRLEPTCSAYNMVVAFDVKVNQPLGNKPMEILEAVLHDYPLLRVSMPANDQGIEQIIWDRVYPNIILSDARHVEASDLTKLVEQDTKQPFDLTQPPLWRIHCYERGQNHYVIAVVIHHALMDFWSIGLLLRDVCKRFGLVTESNVVNGIEFAQYADKQKSNVIGDADESLLFWKNALKHAPHVHSIPLDYPRPAVQQHKGSSVIFRVPESVSSGLVNLAKDYEITLFGLVLSGFYILLNKLSNENNLVVATAVAGRLERSLRNALGQFVNTIALNIDIDADQTLRQFTQQVQEQLKQSLKHQKVAFSRVVEAVSPKRDGSINPLAQVGMFWERLGGLDEFKELLLPIQNPATLAGQDLTLGSFPVRQQEGQLDIMLEMGGEYQGELVGVLKYNSEIFSAESAENMVQLLQVVLSEMVAHPERKIVELDIAPDYANGIQLGYLRGQVTDYPRHDLLGMILKQIDERGDNHAMTSRDHAVSYHKLGQHIAGIAEYLRAHGITNGDRVGLMVDRTVLLPAAVLGIWAAGAAYVPLDPSFPRERLHNIVEDAEPKVILTQTDLMDALTVSVPRLDINQAGVVPLEQVRETLAFGDTAYVMYTSGSTGKPKGVRIGHPSIANFLLSVNDRLQATADMQLLAITTYAFDISVVELLIPLMYGGVVHVCPREISLDGNLLVEYMQAKSINVMQATPSSWKMLLDSEWKGIPHLTALSGGEALDPVLAEKLLGKVSCLWNVYGPTETTVWSSAAHITDAKYIDLGEPMANTQLYVLDEQQRLVPRGVMGELWIGGDGLAVDYWHRPELTDAQFRTLPSLPNAGRLYRTGDKVCLRMDGRLTHHGRLDFQVKIRGFRIELGEIENVLKQIDGITDAVVLVKTTADNDQKLVAYVTGHDIEMAGLKKTLQIHLPAYMVPSTFIRLDEFPMTANNKLDRKAFPEPVFEQSNDYVAPRDSIEIELCTTFEQILSVKRVGIHDDFFELGGHSLLAVKLVNHLKKVFGTELSVALLAQYSTVESLGEIIRENKEIKPSIVIELRRGTYEQPLWLFHPIGGSTFCYMELSRHLNPNRTLRAIQSPGLIEADAAEVAIEEMATLYIAEMQKMQPQGPYFLGGWCFGGAIAYEISRQLRQMGQQVTGIVMIDTRAPIPENVPEDADDAMLLSWFARDLAVPYGKKLTISAQYLRELSPDHMFDHVLKEAKAINVIPLDANPSDFRLYFDTYLANGVALQTYFPEPEDFPILLVKAKDESEDFGESLGWDHLIKDTLTQVDLPGDHSSIMFAENVAAVAKTIDQMYPIPA
>NC_016603.1|YP_004997309.1|3265757_3266018_+|putative-Phosphopantetheine-binding-protein
MNKDKVYWSAIIRTLVAKEMRVEPETIDPEQKFTSYGLDSIVALSVSGDLEDLTKLELEPTLLWDYPTINALAEYLVSELQQGVAS
>NC_016603.1|YP_004997308.1|3263985_3265761_+|acyl-CoA-dehydrogenase
MRQFQSAARLEQILGSVHDNNNDFSWSAAIERDEKEQYPQRAVDFLNAVGMNRFYVPSELGGHMEIGEELLYLHRVLARRDLTINSTYSTNAWSVIVWIGGNANQCQNIASRILSGAAPALAYSEKAHGADLLSSEVTAQSAESKYILNGEKWSINRATLGDSLSLIAKTSNDRGPRSLSAFWLDKRHMASKGTYSLNRLPTVGMRGLDISGIGFNNAEIHKDALIGEEGQGLELGLKTLQVTRAYCSSFSLGAGDTMLRIATEFAIERELYNKKVISIPLVREQLATAYAYLLAAEVLSLVGARGLHVCINQFSTWSPIVKVLVPEYVESLAKITSSVLGSRFFLRNAYADGMYQKAFRDHLIVSVFDGSSTVCLDSLSFQLKSANKGRSKKADHLNQAEAKARYRQLYDLQVETDAIDFRGLEIFNRDGDLVMESLGTIIEMLNDAEATVGLSTEMLSTLREHADRLLVEQRTLDQKIQNYFSNSEESKEFETLRFSLARGYAELFARIAVLGFWVFNRHGLRTALKDGAWLIIFLNAAEGQTSPPITSLRESTLADLLDRISTNHMLSVIDFALAPGDAKPVKEEITP
>NC_016603.1|YP_004997307.1|3262045_3263935_+|beta-ketoacyl-synthase
MAVMDTDNIIATLESHANLNGSKVAFEYLGRQSGGIQSLTYKDLNARVQHQAQVLMNLVDSGDRAVLLFEPGLDFIVSFFACLKAKIIAVPVSLPFNRNGFSNILNIMNDCEPKIVLTTKKILELSGLITLKAQNESLILHAVDAELQRDLVQKDFPLITEKDICFLQYTSGSTGWPKGVIVTHKNIMANEVMIAEAFGTQPEDIGLTWLPVYHDMGLIGSVLQTVYVGLTCYVMSPLDFIRKPLKWLQFISEKGVTITGGPNFAYELCLHRISDEQATSLDLSRLRVLFNGAEPIKAHVMQRFMEKFNTQSELRLDTFLPCYGLAEVTLLVSGVTGPLNAISIDRDKLNANLIQASQDPTAVQVVSCGKISAHIDCRIVNPHTRQEVAAHEVGEIWLAGESVTAGYWQKPEVNQETFAATIIDDAGQPSQVHYLRTGDMGFVKDGDLYVTGRLKDVIIIRGKNYYPQDIECSVEMAHPAVRKGCVAAVNVADSEGVTVVLEIKKKSLDKTLNFEAIRTQVKEQVTADIGLPVEGVYLLHQGRINKTTSGKIRRRKIKEQIERGQLVCLTHPNRRTVIARNYVKNGLEVIRDREQRGQLIRYSSNLLNSMIKEREVRALIFNRLKSALF
>NC_016603.1|YP_004997306.1|3260629_3261346_+|transcriptional-activator-of-quorum-sensing-autoinducer-synthesis-transcription-regulator-protein
MENWQEDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYMEQQYVKIDPTVQHCMVSLQPLVWSSQFAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL
>NC_016603.1|YP_004997305.1|3259431_3259848_-|hypothetical-protein
MVTIPPHFSISADGFIRLNENQLMNYPLQHLISIVESTQIEDSQILYYGFTEWATSLTPALSTGWDWEFIEYNGITSIKRIGLPRSNIMLVDVSGTDIGFEVTETLIEKKIDTLFWEQFIYAQINTTQTMAKLTPYFS
>NC_016603.1|YP_004997315.1|3278245_3278554_+|putative-activator-of-morphogenic-pathway-(BolA),-important-in-general-stress-response
MSLEQQLIERLQTLAPSHLEVINESAGHGGYFPGKESHFKVIIVSDEFNGLRLVQRHQKVYALASDLMNPGQIHALAIHAYLPSEWQGQAPASPECAHAPKS
>NC_016603.1|YP_004997316.1|3278565_3278958_+|hypothetical-protein
MDAHLLTKIIHMTAVAAALMVFVLRASTLFIGVQGEQPNPAGRKILVALQHLSFTVVFITGAILLVMKDFQVQPWFYAKIILFLVLLSSLMKAFKKDDTLLLAQRRAGLVISAIAFIAIIILVIVKPVFA
>NC_016603.1|YP_004997317.1|3279034_3279877_+|putative-ATPase-involved-in-chromosome-partitioning-(ParA-family-ATPase)
MLTRVVFNQKGGVGKSSITVNLAAISAKHGLRTLVIDLDPQANSSQYLLGDEATYSAEKSILEPNIENFFDDVLGNNQQKGLIGNALGSILKAPRNKDLDSFVHSTPFAKLDVLPASPTLGALEHALESKHKIYKLRDSIQNLVGRYDRIYIDTPPAFNFFTLSALIAADKVLIPFDCDVFSKRALQTLIENVLETQDDHNDRLEIEGIVVNQFQSQAKLPREVVQQLKDEGLPVLNSMLPPSILMKESHQKNLPLAHLAPEHKLTQAYETLFGEIEPKR
>NC_016603.1|YP_004997318.1|3279887_3280274_+|hypothetical-protein
MKGLYIAPLVAATLLLGACATTVKPTYVSPTQYQSLSCQQLQSEYNRIQQYIDNGVQTPKSTGMGVGLGLGGGWGRGGWGFGPSISVNMGQSSSTKNTELSRVLGQQEAIVQAAQFKNCPIIVRKKTN
>NC_016603.1|YP_004997319.1|3280488_3281079_+|hypothetical-protein
MIESWFFVLAMLAVLLIPGPTNALLATAAHSQGLSKAFWLIPMEWLGYAYGISFWAVFIHLAAPVWPALLLILHITSVAYVFWMAFRLWKTTHLQQFSQIHRNIRPRQLFFSTLKNPKSLLFAAGIFPAETWNSPENCLMVFGVFTLTLIPAASFWLIFGRALLTGPVQKIKADHLYKGSAMLLILCMLPVVFRFF
>NC_016603.1|YP_004997320.1|3281087_3281729_-|putative-integral-membrane-protein-(DedA)
MELLDFILHVDQHLAEFITNYGTWIYGILFLIIFVETGLVVMPFLPGDSLLFAAGALAASTGAMDPWLLGALLFIAAVLGDTVNYHIGRFIGPRVFEMNSRFINKQHLIKTQEFFARHGGKTIIFARFVPFARTFAPFVAGAGSMNYKFFLTYNVIGAFCWVASFVALGYLFGNMPIVKDNFTHLIFGIIIISVLPGIIGFIREKLKSRKTNA
>NC_016603.1|YP_004997321.1|3281881_3282361_+|hypothetical-protein
MSSSINKHLNKGGKMFNPNVVVKNIVTQSGADSFISLIARLLMAYIFLVAGWGKITGYAATAGYMEAMGVPGGILPLVILVEFGGGLALLFGFQARFAAFGLGIFSILTAFLFHQGGADAAAQYNNGIHFMKNLAMAGGLFFLMLHGAGRISLDHAIEK
>NC_016603.1|YP_004997322.1|3282427_3283645_-|hypothetical-protein
MIADFQQHFWLYVSIPFMSGLIGYITKVVAIQMMFSPLEFKGIKPFLGWQGIVPRKAEKMATIAVELMTAKLIKPEEIFARLDPKRIAKEIEKPLLAAAEDITRDVAQEYQPGLWEGMPEFARQRLIRRVQSKAPEIVEHIMSEVQRDVNRYFDIKHLVISNLLKDKRLLNNIFKRVGKQEFKFFSNVGFVFGFGIGVIQMLCWIVTQGKYPWMLPLFGGFVGFFSDWIALQMMFRPLYPKKILGYTWQGLFIKRQNEVAADYAALISKQLLTSRHMMEELFSGTHSARVIDLVNRHVKQEIDMQAGVIRPLVVYAIGGEKYQNMKSQVAERIMQQLPETMKYVESYAEDAMNIRSTLIERMQKLTPSEFEGMLRPAFKEDEWALIAVGAVLGFVVGELQIQFML
>NC_016603.1|YP_004997323.1|3284030_3285599_+|GMP-synthase
MTTNTQITEDRILILDFGSQYSQLIARRVREAGVYSEMYAFDMSEEDIRAFKPNGIILSGGPESVHEEGSPRAPQVVFELGVPVLGICYGLQTMSEQLGGKVEPGTVHEFGYAEVDIVKRDQLIGNLQDRENQLHVWMSHGDKVSQIPEGFTITASTPSCPVAAVSDEARRFYGVQFHPEVTHTAKGEELLANFVHKICGCGGLWTPEHIIDLRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLNEGDQVMQMFAENMGIRVIRADAEQRFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHNVGGLPEDLAFELVEPLRDLFKDEVRKLGTTLGLPHSMIYRHPFPGPGLGVRILGEVKKEYADILRLADDIFMQELRDSGWYDKTAQAFAVFQPVKSVGVVGDGRRYAWVIALRAVETVDFMTARFAHLPYELVDKISTRIMNEIKDVSRVVYDVSSKPPATIEWE
>NC_016603.1|YP_004997324.1|3285663_3286452_+|streptomycin-3''-adenylyltransferase
MPDLIQLEYLQEKLQQLLAESLFAIYLYGSAVDGGLGPESDLDVLVVVTQPLTSALREQLAQELLKISQPVGELQRPLEVTILLKDEIQSGIYPLSYEIQFGEWLREELKEGGTLSSKKDPDISILLRKARSHHTVLFGPALNQWAPEISDQELWQAMSDTYPEIVAHWDEDADERNQILALCRIYFSLVMKDIASKDNAARWVMSQLPDEQKFVLQRLIQEYRGEIGKQNWQEEHYALQPIVNFLSSKIEEQFEQKRNLIT

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016603_1	1.1\|1685855\|25\|NC_016603\|CRISPRCasFinder	1685855-1685879	25	NC_016603.1	1622886-1622910	0	1.0
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NC_016603.1	553707-553737	0	1.0

1. spacer 1.1|1685855|25|NC_016603|CRISPRCasFinder matches to position: 1622886-1622910, mismatch: 0, identity: 1.0

tctcagcgcaaagtaaactccataa	CRISPR spacer
tctcagcgcaaagtaaactccataa	Protospacer
*************************

2. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to position: 553707-553737, mismatch: 0, identity: 1.0

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttatgctcta	Protospacer
*******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	683798-683828	1	0.968
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	684108-684138	1	0.968
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	107050-107080	1	0.968
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP048065	Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence	33554-33584	1	0.968
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1037496-1037526	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	355196-355226	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	106416-106446	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	81024-81054	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	483763-483793	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1305157-1305187	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1855211-1855241	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	505154-505184	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	87563-87593	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	422049-422079	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	390766-390796	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	449651-449681	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	767476-767506	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	37852-37882	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	62986-63016	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	199902-199932	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	79771-79801	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	79833-79863	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	137988-138018	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	138050-138080	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1594496-1594526	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	527204-527234	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP032350	Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence	154369-154399	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1364908-1364938	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	55558-55588	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	120455-120485	2	0.935
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1208488-1208518	2	0.935
NC_016603_1	1.1\|1685855\|25\|NC_016603\|CRISPRCasFinder	1685855-1685879	25	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	9264-9288	3	0.88
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	MN693974	Marine virus AFVG_250M597, complete genome	27179-27209	5	0.839
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	AP013418	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14	24625-24655	7	0.774
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	AP013420	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26	971-1001	7	0.774
NC_016603_3	3.1\|3277897\|31\|NC_016603\|PILER-CR	3277897-3277927	31	AP013673	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C265, * SEQUENCING IN PROGRESS *	1-29	7	0.774

1. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 1, identity: 0.968

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgtgctcta	Protospacer
***********************.*******

2. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 1, identity: 0.968

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgtgctcta	Protospacer
***********************.*******

3. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 1, identity: 0.968

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgtgctcta	Protospacer
***********************.*******

4. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP048065 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence) position: , mismatch: 1, identity: 0.968

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgtgctcta	Protospacer
***********************.*******

5. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

6. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

7. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

8. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

9. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

10. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

11. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

12. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

13. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

14. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

15. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

16. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

17. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

18. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

19. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

20. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

21. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

22. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

23. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

24. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

25. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

26. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

27. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP032350 (Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

28. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

29. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

30. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccccaaccttggcaaggttgtgctcta	Protospacer
 **********************.*******

31. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.935

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgtgcgcta	Protospacer
***********************.*** ***

32. spacer 1.1|1685855|25|NC_016603|CRISPRCasFinder matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

tctcagcgcaaagtaaactccataa	CRISPR spacer
tttcagcgcaaagtaagctccgtaa	Protospacer
*.**************.****.***

33. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to MN693974 (Marine virus AFVG_250M597, complete genome) position: , mismatch: 5, identity: 0.839

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
gcgaccccaaccttggcaaggttgctctttg	Protospacer
***********************.. **.*.

34. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to AP013418 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14) position: , mismatch: 7, identity: 0.774

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccctaaccttggcaaggttacagtccc	Protospacer
 ******.****************.. **.

35. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to AP013420 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26) position: , mismatch: 7, identity: 0.774

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccctaaccttggcaaggttacagtccc	Protospacer
 ******.****************.. **.

36. spacer 3.1|3277897|31|NC_016603|PILER-CR matches to AP013673 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C265, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.774

gcgaccccaaccttggcaaggttatgctcta	CRISPR spacer
tcgaccctaaccttggcaaggttacagtc--	Protospacer
 ******.****************.. **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

528376 : 535652

Acinetobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_004994755.1\|528376_529642_-	putative exodeoxyribonuclease VII large subunit	M1NLU2	Moumouvirus	1.1e-12	29.5
YP_004994756.1\|530149_530383_+	hypothetical protein	NA	NA	NA	NA
YP_004994757.1\|530535_531207_-	hypothetical protein	A0A1B1P9J5	Acinetobacter_phage	1.2e-63	55.8
YP_004994758.1\|531878_532133_+	hypothetical protein	NA	NA	NA	NA
YP_004994759.1\|532343_532733_+	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	3.0e-51	76.7
YP_004994760.1\|532763_533309_+	hypothetical protein	A0A0B5L5G7	Acinetobacter_phage	6.6e-73	69.1
YP_004994761.1\|533405_534023_-	homoserine/homoserine lactone efflux protein	NA	NA	NA	NA
YP_004994762.1\|534262_535195_+	lipid A biosynthesis lauroyl acyltransferase (heat shock protein B)	A0A1W6JP29	Morganella_phage	4.7e-42	34.2
YP_004994763.1\|535436_535652_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	5.9e-17	61.7

DBSCAN-SWA_2

1980706 : 1995510

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_004996112.1\|1980706_1981282_+	bifunctional protein trpG	A0A0P0IKJ1	Acinetobacter_phage	7.2e-110	99.5
YP_004996113.1\|1981383_1984155_-	membrane alanyl aminopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	97.6
YP_004996114.1\|1984162_1986895_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	97.1
YP_004996115.1\|1987252_1988302_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.1e-188	99.1
YP_004996116.1\|1988311_1989118_+	indole-3-glycerol phosphate synthase (IGPS)	A0A0P0IR83	Acinetobacter_phage	4.8e-144	97.8
YP_004996117.1\|1989127_1989823_+	hypothetical protein	A0A0P0IDT4	Acinetobacter_phage	1.3e-118	97.0
YP_004996118.1\|1989833_1990817_-	putative xanthine dehydrogenase protein	A0A0P0IKN7	Acinetobacter_phage	2.1e-170	90.5
YP_004996119.1\|1990823_1993199_-	xanthine dehydrogenase, large subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	97.5
YP_004996120.1\|1993200_1994700_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	3.4e-276	95.6
YP_004996121.1\|1994961_1995510_+	GTP cyclohydrolase I	A0A0P0HSD2	Acinetobacter_phage	6.6e-97	99.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016603

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection