CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017515	Neisseria meningitidis M04-240196, complete sequence	10 crisprs	csa3,DEDDh,c2c4_V-U1,cas3	4	1	6	3

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017515_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_1

55814-55925

Orphan

Consensus_repeat	Method
TTTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_1

>merge|NC_017515|1|55814-55925|CRISPRCasFinder
TTTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGGGATTTTAGGTTTCTGTTTTTGGTTTTCTGTTTTCGTGGGAATGACGGGATGTAGGTTCGTGGGAATGACGG

>NC_017515|1|1|55814-55925|CRISPRCasFinder
TTTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGG	GATTTTAGGTTTCTGTTTTTGGTTTTCTGT
TTTCGTGGGAATGACGGGATGTAGGTTCGTGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002225909.1\|48926_49157_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_041917613.1\|51902_54914_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NC_017515.1\|WP_002227785.1\|46065_46350_-\|DUF2523-domain-containing-protein	unknown	unknown	gnl\|CDD\|371214
NC_017515.1\|WP_002212532.1\|49930_51139_-\|replication-initiation-factor-domain-containing-protein	unknown	unknown	gnl\|CDD\|225497
NC_017515.1\|WP_014581281.1\|49598_49910_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002222492.1\|48166_48481_-\|DUF1132-family-protein	unknown	unknown	gnl\|CDD\|284087
NC_017515.1\|WP_002218487.1\|59845_60889_-\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NC_017515.1\|WP_002212530.1\|49394_49595_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_025459756.1\|61694_62102_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002223128.1\|48596_48899_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002220107.1\|71376_73395_+\|oligopeptide-transporter,-OPT-family	unknown	unknown	gnl\|CDD\|224216
NC_017515.1\|WP_014581282.1\|56020_58171_-\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NC_017515.1\|WP_002215267.1\|63088_63505_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NC_017515.1\|WP_002234427.1\|61008_61713_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NC_017515.1\|WP_002220105.1\|70059_71181_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_017515.1\|WP_014581279.1\|44877_46065_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|283385
NC_017515.1\|WP_014581280.1\|46653_48189_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283306
NC_017515.1\|WP_002218483.1\|58456_59683_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NC_017515.1\|WP_162467419.1\|69326_69791_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|213597
NC_017515.1\|WP_002234429.1\|62150_62942_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_041917613.1\|51902_54914_+\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	1.14312e-169
NC_017515.1\|WP_002227785.1\|46065_46350_-\|DUF2523-domain-containing-protein	gnl\|CDD\|371214	pfam10734, DUF2523, Protein of unknown function (DUF2523). This is a family of phage related proteins whose function is uncharacterized.	7.46268e-13
NC_017515.1\|WP_002212532.1\|49930_51139_-\|replication-initiation-factor-domain-containing-protein	gnl\|CDD\|225497	COG2946, COG2946, Putative phage replication protein RstA [DNA replication, recombination, and repair].	0
NC_017515.1\|WP_002234427.1\|61008_61713_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	3.24147e-128
NC_017515.1\|WP_002222492.1\|48166_48481_-\|DUF1132-family-protein	gnl\|CDD\|284087	pfam06575, DUF1132, Protein of unknown function (DUF1132). This family consists of several hypothetical proteins from Neisseria meningitidis. The function of this family is unknown.	1.60633e-47
NC_017515.1\|WP_002218487.1\|59845_60889_-\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_017515.1\|WP_002220107.1\|71376_73395_+\|oligopeptide-transporter,-OPT-family	gnl\|CDD\|224216	COG1297, COG1297, Predicted membrane protein [Function unknown].	0
NC_017515.1\|WP_014581282.1\|56020_58171_-\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NC_017515.1\|WP_002215267.1\|63088_63505_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	7.73959e-49
NC_017515.1\|WP_162467419.1\|69326_69791_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|213597	TIGR01259, ComE_operon_protein_1, comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation. [Cellular processes, DNA transformation].	6.60414e-55
NC_017515.1\|WP_002220105.1\|70059_71181_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_017515.1\|WP_014581279.1\|44877_46065_-\|DUF2075-domain-containing-protein	gnl\|CDD\|283385	pfam05707, Zot, Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.	1.26936e-23
NC_017515.1\|WP_014581280.1\|46653_48189_-\|hypothetical-protein	gnl\|CDD\|283306	pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.	0
NC_017515.1\|WP_002218483.1\|58456_59683_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_017515.1\|WP_002234429.1\|62150_62942_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	2.4112e-100

>NC_017515.1|WP_041917613.1|51902_54914_+|pilus-assembly-protein
MNAQNLPEVKWGQDYRKLAQKSNERQFTHTTNFYTKKNVSLSFNNTDEVVAKKNGTVVFGAATYLPPYGKVSGFDDKRLKERGNAVNWIHTTDPGLVGYSYEDVTCNSGNCPEVSYKTQFIFDNHQLAKKKTDSKLDIYEDKSRDNSPIYKLQDYPWLGVSFNLGGESSFKPKRQGSLVSSFSEDVTQQNGTQDQYKGKNLVYTTEDYNNQGNRNHQDKHHAIAFYLNAKLHLLDKKGIKDITDKTVQLGVLKPRIDLTEAWKNRHGSFFGNGNWTFEDKGAVSVKLILPEVKAGRCINKPNPNPKAQALSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASEIKSKEPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGNDTFGIVSEGSFMPDDSEWKKVLLPWTVRAFNDDGQFNTVNKEENNGKPKYSQKYRSRNNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKKSGGDDRNYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKSYVGDRYGVDGGFVLRQVEWKGQNRVFMFGAMGFGGRGAYALDLTKAENGDPTAVSLFDVKHDNNGKNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSGNNPTSWSARAIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNETDTGTAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAVAQYSGHKKGTNGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREVFY
>NC_017515.1|WP_002212532.1|49930_51139_-|replication-initiation-factor-domain-containing-protein
MSEAEYFSHFISNGNGKLLEIPQRRGRQDGVFIDWLSFTLHEDSLLKVSGCPLVSDAEYMFVLSKKLEEILGFGITSRCKSKGNKFYDSMFRLGSEEVDYGEVHYGGQRNTVLIELKGVGCNIANPGWELRLKQFLEDSLRPRITRVDLALDFFDGEYTPEQALLDHDNGFFDNSNMRPKSEMVGTAWRREDGSGKTFYVGRKKNSRFVRVYEKGRQLGDKESKWVRFEIQFNHGDMEIPLDILINQGSYFSGAFPICQKFKNMPNPERFDYRKKVANLTFQHKLRYAKNAVGKLINFMFDMGFDSDEIVRYLKADLGYPKGLEPEKYSLAGLKESLKFGFIHEQPDVDLEVELEELGIIKFKQSDKFDPDKRLFDPHHDVESERQYQLYLDRMYDLHANQN
>NC_017515.1|WP_014581281.1|49598_49910_-|hypothetical-protein
MFNQTQTVTYPATFLGAKKFKGEIDGSNIDTCSVLVATPLPAQSGNAVGFTAAQMKFGDSKNFSRLENLKYPCEVMVTVEMTSTGKGMVPSLIDFQVAEKPKG
>NC_017515.1|WP_002212530.1|49394_49595_-|hypothetical-protein
MKFEERFIVQDLETHDFIYPDPFGDVGFTQNIKSAGQFESYEDALNSGINEIGGGFQIFQFFVKSE
>NC_017515.1|WP_002225909.1|48926_49157_-|hypothetical-protein
MNIVKKYAVKAALAAGIFTPAIVMADTFDASAIGTQVANVIMGFVAMVSAVGMAAITVILAIQGFKMAWSMIKSVK
>NC_017515.1|WP_002223128.1|48596_48899_-|hypothetical-protein
MGYRVGINCFDTRLQADDYLLSSLPPTVTQDGKIIRPERVGDKWILNGKPVTLSYPECSNFEQIKQGSYVGSTVLILFVVIYGFRLLINFLKDIGKVGTD
>NC_017515.1|WP_002222492.1|48166_48481_-|DUF1132-family-protein
MNKPFITQAQLALYKYQPSSKYYGKTMAYTFASELLDYSKVNKFIIHEEIQCFLNRRISNNIWKIYFSDESVAYIKILELQDDSSRGIEIKTFDFNPNVGDVFG
>NC_017515.1|WP_014581280.1|46653_48189_-|hypothetical-protein
MLGMFSVNSYAERSKYHIGNSNVRLDIDHTKSVVTDFRVDGQRFSGRIIEPSIIEHVPTGARSLEKVPVKFTASVSRAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQAQGYQYDPETDKFVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNRCTFNWNGGDCLVNKGDDFRNGADFSLIRNSKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGEDGGLLCKFFPDILACDRLPEPNPAEDLNLPSETVNVEFQKSGIFQNSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
>NC_017515.1|WP_002227785.1|46065_46350_-|DUF2523-domain-containing-protein
MKLLAALIPLLMSVAGRILTALGLMAVTYSGVDRLVAHFQQAITHSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK
>NC_017515.1|WP_014581279.1|44877_46065_-|DUF2075-domain-containing-protein
MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGSKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADDPVKMASSAFSSIYTLDKKVYDLYESAEVHTVNKVKRSKWFYTLPVIILLIPVFVGLSYKMLSSYGKKQEEPAAQESAATEHQAVFQDKTEGEPVNNGNLTADMFVPTLSEKPESKPIYNGVRQVRTFEYIAGCIEGGRTGCACYSHQGTALKEVTELMCKDYVKNGLPFNPYKEESQGRDVQQSEQHHSDRPQVATLGGKPWQNLMYDNWQERGKPFEGIGGGVVGSAN
>NC_017515.1|WP_014581282.1|56020_58171_-|TIGR01666-family-membrane-protein
MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGIIAGGLVDLDNRLTGRLKNIIATVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGAVGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAIILFQIILPHRPVQESVANAYDALGGYLEAKADFFDPDEAEWIGNRHIDLAMSNTGVITAFNQCRSALFYRLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQGQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDSNDSPDIRHLRRLLDNLGSVDQQFRQLQHNGLQAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLSLVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVPYFTPSVETKLWIVIVSTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRIIDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKITERLKSGETGDDVEYRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRSEMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQSHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA
>NC_017515.1|WP_002218483.1|58456_59683_-|PilT/PilU-family-type-4a-pilus-ATPase
MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCETAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRDGEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRGLLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDTINWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERILNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGDLMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGKTPELLYDRVNGLNLIS
>NC_017515.1|WP_002218487.1|59845_60889_-|type-IV-pilus-twitching-motility-protein-PilT
MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSAEEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPSTVLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNGRVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEVARRRAQNSESMSF
>NC_017515.1|WP_002234427.1|61008_61713_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTVLQERYCEVSDRIGKLVLQVGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMGMSDDMPAAIACGATHVRIGSAIFGKRSRLECVQ
>NC_017515.1|WP_025459756.1|61694_62102_+|hypothetical-protein
MGMRTIKYLAMALLLMFTVAGCQLAGWYPCPSLSGWCMPRKPAAIDFWDIGGESPPSLEDYEIPLSDGNRSVRANEYESAQQSYFYRKIGKFEACGLDWRTRDGKPLIETFKQEGFDCLKKQGLRRNGLSECVRW
>NC_017515.1|WP_002234429.1|62150_62942_+|pyrroline-5-carboxylate-reductase
MNVYFLGGGNMAAAVAGGLVKQGGYRIHIANRGAEKRERLQKELGVETSETLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVDTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMFAEAEVSETDRRIADRIMKSVGLTVWLEDEAQMHSITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ
>NC_017515.1|WP_002215267.1|63088_63505_+|RNA-polymerase-binding-protein-DksA
MAKLTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD
>NC_017515.1|WP_162467419.1|69326_69791_+|helix-hairpin-helix-domain-containing-protein
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK
>NC_017515.1|WP_002220105.1|70059_71181_+|molecular-chaperone-DnaJ
MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKDAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTSPETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFATAALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPVNLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD
>NC_017515.1|WP_002220107.1|71376_73395_+|oligopeptide-transporter,-OPT-family
MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLTFASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGFPFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQGGSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYLVGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDMEMAAFAMKLWKEKVRFIGAGTIGIAAVWTLLMLLKPMVEGMKMSFKSFGGGAPATERAEQDLSPKAMIFWVLSMMFVLGVSFYHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSVVVISLVLLLVGESGGLLADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLKATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMTTIASGIFAHNLEWVYIFTGIVIGAVLIVVDLVLKKSSGGKLALPVLAVGMGIYLPPSVNMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFIIAFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMFFFAQRVLKAGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_2

202041-202139

Orphan

I-E

Consensus_repeat	Method
CGTCATTTCCGCGCAGGCGGGAATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_2

>merge|NC_017515|2|202041-202139|CRISPRCasFinder
CGTCATTTCCGCGCAGGCGGGAATCCGGTCTGTTCGGTTTCAGTTGTTTTTGGGTTTCGGGTAATTTCCAAATCGTCATTCCCGCGCAGGCGGGAATCC

>NC_017515|2|2|202041-202139|CRISPRCasFinder
CGTCATTTCCGCGCAGGCGGGAATCC	GGTCTGTTCGGTTTCAGTTGTTTTTGGGTTTCGGGTAATTTCCAAAT
CGTCATTCCCGCGCAGGCGGGAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002226927.1\|212448_213480_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_017515.1\|WP_019273923.1\|197228_199124_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_017515.1\|WP_002215509.1\|199448_200876_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_017515.1\|WP_002216270.1\|191283_191841_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_017515.1\|WP_002218592.1\|190481_191228_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|376506
NC_017515.1\|WP_014575111.1\|196318_196564_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002226919.1\|194139_194763_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NC_017515.1\|WP_002221868.1\|194861_195635_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_017515.1\|WP_015815957.1\|208644_208890_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581298.1\|206424_207417_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NC_017515.1\|WP_002218608.1\|210369_210747_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NC_017515.1\|WP_002221872.1\|201035_202025_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NC_017515.1\|WP_014581300.1\|211469_212195_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|225235
NC_017515.1\|WP_002243953.1\|208891_209302_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581297.1\|203171_205931_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NC_017515.1\|WP_002218599.1\|196576_197161_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NC_017515.1\|WP_072104497.1\|207464_208637_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|223834
NC_017515.1\|WP_002215527.1\|209550_210360_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_017515.1\|WP_002218609.1\|210965_211400_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NC_017515.1\|WP_002226918.1\|192021_193149_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002226927.1\|212448_213480_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	5.37591e-178
NC_017515.1\|WP_019273923.1\|197228_199124_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_017515.1\|WP_002215509.1\|199448_200876_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NC_017515.1\|WP_002216270.1\|191283_191841_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.06261e-103
NC_017515.1\|WP_002218592.1\|190481_191228_-\|isoprenyl-transferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	1.02554e-133
NC_017515.1\|WP_014581298.1\|206424_207417_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	1.72923e-117
NC_017515.1\|WP_002226919.1\|194139_194763_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.65681e-89
NC_017515.1\|WP_002221868.1\|194861_195635_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.38752e-83
NC_017515.1\|WP_002218608.1\|210369_210747_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	2.6515e-43
NC_017515.1\|WP_002221872.1\|201035_202025_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	3.90221e-172
NC_017515.1\|WP_014581300.1\|211469_212195_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|225235	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones].	5.45432e-107
NC_017515.1\|WP_014581297.1\|203171_205931_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NC_017515.1\|WP_002218599.1\|196576_197161_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	2.56478e-105
NC_017515.1\|WP_072104497.1\|207464_208637_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	2.68095e-176
NC_017515.1\|WP_002215527.1\|209550_210360_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	9.32267e-133
NC_017515.1\|WP_002218609.1\|210965_211400_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	8.21782e-56
NC_017515.1\|WP_002226918.1\|192021_193149_-\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	6.45741e-46

>NC_017515.1|WP_002221872.1|201035_202025_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRARAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTALAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRVALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHLGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYHSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL
>NC_017515.1|WP_002215509.1|199448_200876_-|sodium:alanine-symporter-family-protein
MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQFRLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVFWMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSLIFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVVPLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKRGLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYGDLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITAVFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKLKMGKDPEFKLSEHPGLKRRIKSDVW
>NC_017515.1|WP_019273923.1|197228_199124_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRGFKDAK
>NC_017515.1|WP_002218599.1|196576_197161_-|ribonuclease-HII
MHILTAGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF
>NC_017515.1|WP_014575111.1|196318_196564_-|hypothetical-protein
MPSELQTAFPASQLQRERTHTAIPAKNRKSKKKPKIRHSRAGGNPIRPVSVFFEFQVTSKPPFPQKRESRNSKLQEFIKND
>NC_017515.1|WP_002221868.1|194861_195635_+|ParA-family-protein
MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQGNATTGSGIDKAGLQSGVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGTKAYLALADELAARVSGK
>NC_017515.1|WP_002226919.1|194139_194763_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MERKERLRAGIAAMGLDISETAQDRLLVYVDLLKKWNKTYNLTALRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANTKKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDGGYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR
>NC_017515.1|WP_002226918.1|192021_193149_-|FUSC-family-protein
MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARLLHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGNLLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWLDSGLMRAMNVLIGAAIAIAAAKLLPLKSTLMWRFMLADNLADCSKMIAEISNGRRMTRERLEENMAKMRQINARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSEIRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLSTNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG
>NC_017515.1|WP_002216270.1|191283_191841_-|ribosome-recycling-factor
MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI
>NC_017515.1|WP_002218592.1|190481_191228_-|isoprenyl-transferase
MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQLPIEQQRN
>NC_017515.1|WP_014581297.1|203171_205931_-|Rne/Rng-family-ribonuclease
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVTEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSERGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVAERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQVETRQG
>NC_017515.1|WP_014581298.1|206424_207417_+|RluA-family-pseudouridine-synthase
MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRIIRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAHTVFRALNRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPPDLAQFAVMLENGTKM
>NC_017515.1|WP_072104497.1|207464_208637_+|lipid-A-disaccharide-synthase
MWGQTNMVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARFVGIGGELMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDFNLGVAEKLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGRAEFVGHPMAQLMPLEDDRETARQTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALLLLERYPAACFLLPAATEATKRRLAEILQRSEFAGLPLTVTDRQSETVCRAADAVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQHDAVPEKLAAALADWYEHPDKVAALQQDFRVLHLLLKKDTADLAARAVLEEAGC
>NC_017515.1|WP_015815957.1|208644_208890_+|hypothetical-protein
MDYLLEAARITKEGGEIVINGTSNNKYLRGIPNEGELARVGLRLKYNGPLKEEFKQLKFHKSSRTNLDSKNLKLIVFEKVK
>NC_017515.1|WP_002243953.1|208891_209302_+|hypothetical-protein
MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFPQEIPTPNYIDWVKIKFKQFSYLKFIYGYATKSQDKDIDNILELGELKQDDEILDYGGTLELIGGRCDLLTGFSIDIVCREIELEFLDQESFN
>NC_017515.1|WP_002215527.1|209550_210360_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDAGKAAIHTAAEQTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR
>NC_017515.1|WP_002218608.1|210369_210747_-|outer-membrane-protein-assembly-factor-BamE
MNKTLILALSALLGLAACSAERVSLFPSYKLKIIQGNELEPRAVAALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLVRTEGDVLQNAAEALKDRQNTDKP
>NC_017515.1|WP_002218609.1|210965_211400_+|ferric-iron-uptake-transcriptional-regulator
MEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVTEFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR
>NC_017515.1|WP_014581300.1|211469_212195_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRIPLLAPDNYAFPDPTYALARCDGLVGVSGDLDAGRLLEAYRNGVFPWFSRDGWFFWYAVGPRAVVFPDRLHIPRSLAKTLRNGSYRVAVNGCFAEVVAHCAAAARPNQDGTWIAPEFQTAYLKLHEMGHAHSFECHYPDESGETRLAGGFYGVQIGSVFYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAERLRMLNAVLLKEEIGRREVACKGL
>NC_017515.1|WP_002226927.1|212448_213480_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETNAHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGAFTSKEKAKVHLESGAKKVLISAPGGDDVDATVVYGVNDSVLTADMTVVSNASCTTNCLSPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKAVGLVLPELKGRLDGLAIRVPTVNVSLVDLSFQAARDTTVEEINALMKAASEAGALKGVLGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMVKVFAWYDNEWGFSCQMLNTARRMFGLEVRPLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_3

292324-292502

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCTGCGAAAGCGGGAATCTAG	CRISPRCasFinder

2 spacers

DinG

The CRISPR arrays of NC_017515_3

>merge|NC_017515|3|292324-292502|CRISPRCasFinder
CGTCATTCCCGAGCAGGCGGGAATCCGGTTATTTAAAACTGCAGAAATTTATCCGAAGCAACAACAATCTTTCCATCGTCATTCCTGCGAAAGCGGGAATCTAGAAACGAAAAGCAACAGGAATTTATCGGGAAAACAGAAACCCCTATGCCGTCATTCCCGCGAAAGCGGGAATCTAG

>NC_017515|3|3|292324-292502|CRISPRCasFinder
CGTCATTCCCGAGCAGGCGGGAATCCGG	TTATTTAAAACTGCAGAAATTTATCCGAAGCAACAACAATCTTTCCAT
CGTCATTCCTGCGAAAGCGGGAATCTAG	AAACGAAAAGCAACAGGAATTTATCGGGAAAACAGAAACCCCTATGC
CGTCATTCCCGCGAAAGCGGGAATCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_014581320.1\|303278_304580_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NC_017515.1\|WP_002254130.1\|288411_290820_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NC_017515.1\|WP_014575140.1\|286582_287281_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NC_017515.1\|WP_002215698.1\|304569_305481_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_017515.1\|WP_002221941.1\|300086_300701_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|225526
NC_017515.1\|WP_014581319.1\|293594_295475_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|223631
NC_017515.1\|WP_014581316.1\|284826_286365_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NC_017515.1\|WP_002239466.1\|287337_288342_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|225719
NC_017515.1\|WP_002221927.1\|278396_279185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273953
NC_017515.1\|WP_014581314.1\|282905_283688_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_017515.1\|WP_002221942.1\|300736_302887_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NC_017515.1\|WP_002215682.1\|295783_296416_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NC_017515.1\|WP_002233479.1\|296487_297858_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NC_017515.1\|WP_041917622.1\|290924_292085_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NC_017515.1\|WP_014581315.1\|283738_284695_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NC_017515.1\|WP_002226961.1\|297937_299806_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017515.1\|WP_002260368.1\|286364_286556_-\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002221943.1\|302986_303211_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002221929.1\|280540_282841_-\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NC_017515.1\|WP_002216361.1\|305588_305987_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002254130.1\|288411_290820_+\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	0
NC_017515.1\|WP_014575140.1\|286582_287281_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	7.04425e-47
NC_017515.1\|WP_002215698.1\|304569_305481_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.60033e-69
NC_017515.1\|WP_002221941.1\|300086_300701_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|225526	COG2979, COG2979, Uncharacterized protein conserved in bacteria [Function unknown].	3.70832e-71
NC_017515.1\|WP_014581319.1\|293594_295475_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	1.13953e-81
NC_017515.1\|WP_014581316.1\|284826_286365_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	3.26989e-180
NC_017515.1\|WP_002239466.1\|287337_288342_-\|phosphotransferase	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	6.24483e-149
NC_017515.1\|WP_002221927.1\|278396_279185_+\|hypothetical-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.56413e-08
NC_017515.1\|WP_014581314.1\|282905_283688_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.63084e-139
NC_017515.1\|WP_002221942.1\|300736_302887_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NC_017515.1\|WP_002215682.1\|295783_296416_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	9.34183e-62
NC_017515.1\|WP_002233479.1\|296487_297858_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NC_017515.1\|WP_041917622.1\|290924_292085_+\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.69833e-23
NC_017515.1\|WP_014581315.1\|283738_284695_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	6.89644e-128
NC_017515.1\|WP_002226961.1\|297937_299806_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.8207e-79
NC_017515.1\|WP_014581320.1\|303278_304580_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	9.07251e-140
NC_017515.1\|WP_002221929.1\|280540_282841_-\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017515.1\|WP_002216361.1\|305588_305987_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.7727e-20

>NC_017515.1|WP_041917622.1|290924_292085_+|peptidylprolyl-isomerase
MKIKALMIAAALLAAADVHAAPQKAKTASAKAAKAAKAAKAAKAAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAATAQKEAAPAQQQGGIRFSDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDIR
>NC_017515.1|WP_002254130.1|288411_290820_+|LPS-assembly-protein-LptD
MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRSVSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQVQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQQTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASVEADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVPYYFNLAPNLDATFAPSVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGGSLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSRQDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDSGATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYYGNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRSDWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKIYLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEVLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGRNKRP
>NC_017515.1|WP_002239466.1|287337_288342_-|phosphotransferase
MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSSVVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDFGNTTFLTAMLQEQGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELTFKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYDLVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVAGIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
>NC_017515.1|WP_014575140.1|286582_287281_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKNVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ
>NC_017515.1|WP_002260368.1|286364_286556_-|hypothetical-protein
MLEINRNPAILLHFRVLIQFAAGKGSFRFGKPLQTASNPMPSEAVSVVQYAPLPQTGTTVEEQ
>NC_017515.1|WP_014581316.1|284826_286365_-|murein-biosynthesis-integral-membrane-protein-MurJ
MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVAFKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALGILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIPAFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPKLNFKDAAVNRVMKQMAPAILGVSVAQVSLVINTIFASYLQSGSVSWMYYADRMMELPSGVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVATLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLICTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKMLLSLAVMGGGLWAAQACLPFEWVRAGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFKRVEN
>NC_017515.1|WP_014581315.1|283738_284695_-|alpha/beta-fold-hydrolase
MILTPPDTPFFLRNGNADTIAAKFLQRPAPTYRRELLPDSTGKTKVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRSRGWHGAVVHFRSCGGIANTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGERGENALPQAAAAVSAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKARSLHGFQTAFAAGCKTLGEFDDRFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAVTLFQPAHGGHAGFVGSTGGRLHLQWLPQTVLSYFDSFRTNRR
>NC_017515.1|WP_014581314.1|282905_283688_-|indole-3-glycerol-phosphate-synthase-TrpC
MTDILNKILTAKAQEVAAQKAAVNAEHIRALAAEAAPVRSFIGSIRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGVACLSVLTDEPYFQGSPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVAHELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVVTESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF
>NC_017515.1|WP_002221929.1|280540_282841_-|DNA-helicase-RecQ
MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGGGKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSGTSADEAREIADRLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGMLAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKKQLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRFTHEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCYGLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCGHCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLSTFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLKRDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMPQDLNGLHDIYGLGEAKIDRFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWRYEQARAENCALHAVLSDESLADMLADTPETETDLEGVYGLGSVRAAKYGRDILAVCRPFSDGIDETAKRKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELAAVYGVGEEKAARYGAAVLAVLERNAV
>NC_017515.1|WP_002221927.1|278396_279185_+|hypothetical-protein
MNPQDKCWQVHRHLAEYADQRLTLVRNAPKYILLAGADADISRSLLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFTGKGVVQHCQSPIAPLPEACADMLWSNLGLLAAEQILPVLHNWARALKTDGLLFFTCFGRDTFTELKCRLKENGIESRSVMFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAARSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR
>NC_017515.1|WP_014581319.1|293594_295475_-|VacB/RNase-II-family-3'-5'-exoribonuclease
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIALYAAPVYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLGNGMKRVGIHIAAPSLAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAYRPAVSIYFDVDSKFNVGEPTCKIEAVNIAENLRIQTIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAITLQKARGKYEPDRAPQYDYSIELDEEGKVSVVRRERGSPIDTLVSEMMILANSTWAQMLHDNDLPGLFRVQPTGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDDTAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV
>NC_017515.1|WP_002215682.1|295783_296416_+|TIGR00730-family-Rossman-fold-protein
MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPYQDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVGKAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA
>NC_017515.1|WP_002233479.1|296487_297858_+|adenylosuccinate-lyase
MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLKALAAEPKIAEVPPFSAETLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKRFAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDLAAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKNLQVQEFLGKINGAVGNYNAHMVAYPDVDWETHCRNFVEISLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVWGYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQRDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTVMRRYGVANPYEKLKDLTRGKGGITPEVLKGFIGSLEIPVEAKAKLLELTPALYVGKAEALAKRI
>NC_017515.1|WP_002226961.1|297937_299806_+|acyltransferase
MQAVRYRPEIDGLRAVAVLSVIIFHLNNRWLPGGFLGVDIFFVISGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQMRKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKKTKSLRVLRNISIILFLILTATSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVYGQTQNGRRQTANGKRQLLSSLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRSMQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALTAGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPGAPLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDEKLADNPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFQARFRETVKRIAAVKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLVKDIPNVHWVDAQKYLPKNTVEIHGCYLYGDQDHLTYFGSYYMGREFHKHERLLKSSRDGALQ
>NC_017515.1|WP_002221941.1|300086_300701_-|tellurite-resistance-TerB-family-protein
MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGALVAGVASMLLNGKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRTMIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIGDIAAAVGNDEALAAEAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF
>NC_017515.1|WP_002221942.1|300736_302887_-|ATP-dependent-DNA-helicase-DinG
MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGDPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELSFALAKGRGRYLCPYKLYQLTQNNAQQNLTGFETPEVLWDSKPKPEELKLLRDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRPECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQMTGKIAALTDKAELANLADETAASLLDSLHEWQFHLAEEPSLSLGVSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVIGLNDALSAARREKEQDSALLDRLTGEFGLFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLILRQTGLQWLPETTTLALKSPFDFEKQGELYIPPIYASPKDPEAHTAAIIEWLPKLISPTEAIGTLVLFSSRKQMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG
>NC_017515.1|WP_002221943.1|302986_303211_+|hypothetical-protein
MVFWLQRLKYPLLLCIADMLLYRLLGGAEIECGRCPVPPMTDWQHFLLAMGTVSAWVAVIWAYLIIESEKNGRY
>NC_017515.1|WP_014581320.1|303278_304580_-|deoxyribodipyrimidine-photo-lyase
MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCAAVAEGLPIIGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFFLQLALQHTDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP
>NC_017515.1|WP_002215698.1|304569_305481_-|LysR-family-transcriptional-regulator
MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEKIASRKGCRNAV
>NC_017515.1|WP_002216361.1|305588_305987_+|DoxX-family-protein
MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSPGGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGESAVLFCFVFLYIAAAGGGAWSLDRLFFKRKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_4

1885879-1885977

Orphan

I-E

Consensus_repeat	Method
GCCGTCATTCCCGCGCAGGCAGAAATCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_4

>merge|NC_017515|4|1885879-1885977|CRISPRCasFinder
GCCGTCATTCCCGCGCAGGCAGAAATCCAACTTGTCCGGTTCCGGTTGTTTTTCGTCTCGTAACTTTTGAGCCGTCATTCCCGCGCAGGCAGAAATCCA

>NC_017515|4|4|1885879-1885977|CRISPRCasFinder
GCCGTCATTCCCGCGCAGGCAGAAATCCA	ACTTGTCCGGTTCCGGTTGTTTTTCGTCTCGTAACTTTTGA
GCCGTCATTCCCGCGCAGGCAGAAATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_014581551.1\|1892627_1894049_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225153
NC_017515.1\|WP_002222986.1\|1895590_1896766_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NC_017515.1\|WP_002214517.1\|1880576_1881692_+\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NC_017515.1\|WP_002217908.1\|1882294_1882942_+\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|225708
NC_017515.1\|WP_002227620.1\|1877278_1877908_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_017515.1\|WP_014581548.1\|1889954_1890797_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NC_017515.1\|WP_002214509.1\|1876449_1877073_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NC_017515.1\|WP_002232989.1\|1887578_1888658_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NC_017515.1\|WP_002214504.1\|1873040_1874228_-\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NC_017515.1\|WP_002239999.1\|1886986_1887499_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_017515.1\|WP_014581547.1\|1883523_1885809_+\|type-IV-pilus-secretin-PilQ	unknown	unknown	gnl\|CDD\|227133
NC_017515.1\|WP_002221479.1\|1881694_1882294_+\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NC_017515.1\|WP_002227626.1\|1894216_1895458_+\|NeuD/PglB/VioB-family-sugar-acetyltransferase	unknown	unknown	gnl\|CDD\|376775
NC_017515.1\|WP_002222987.1\|1896813_1898724_+\|NADH-dependent-dehydratase-PglD	unknown	unknown	gnl\|CDD\|224011
NC_017515.1\|WP_014581549.1\|1890826_1891291_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|224246
NC_017515.1\|WP_014581552.1\|1898779_1900072_+\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|226485
NC_017515.1\|WP_002219786.1\|1878028_1880425_-\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NC_017515.1\|WP_002214522.1\|1882959_1883505_+\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|225709
NC_017515.1\|WP_014581550.1\|1891323_1892433_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NC_017515.1\|WP_033914512.1\|1874220_1876173_-\|cytochrome-c-biogenesis-protein	unknown	unknown	gnl\|CDD\|224252

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_014581551.1\|1892627_1894049_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	5.85906e-29
NC_017515.1\|WP_002222986.1\|1895590_1896766_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	2.37451e-161
NC_017515.1\|WP_002214517.1\|1880576_1881692_+\|pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	2.23923e-147
NC_017515.1\|WP_002217908.1\|1882294_1882942_+\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|225708	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion].	3.93473e-90
NC_017515.1\|WP_002227620.1\|1877278_1877908_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.811e-104
NC_017515.1\|WP_014581548.1\|1889954_1890797_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.69581e-143
NC_017515.1\|WP_002214509.1\|1876449_1877073_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.06154e-40
NC_017515.1\|WP_002232989.1\|1887578_1888658_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NC_017515.1\|WP_002214504.1\|1873040_1874228_-\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.64179e-81
NC_017515.1\|WP_002239999.1\|1886986_1887499_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.73511e-75
NC_017515.1\|WP_014581547.1\|1883523_1885809_+\|type-IV-pilus-secretin-PilQ	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	0
NC_017515.1\|WP_002221479.1\|1881694_1882294_+\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	4.79078e-62
NC_017515.1\|WP_002227626.1\|1894216_1895458_+\|NeuD/PglB/VioB-family-sugar-acetyltransferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	9.0318e-92
NC_017515.1\|WP_002222987.1\|1896813_1898724_+\|NADH-dependent-dehydratase-PglD	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NC_017515.1\|WP_014581549.1\|1890826_1891291_+\|transcriptional-repressor-NrdR	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	8.8597e-74
NC_017515.1\|WP_014581552.1\|1898779_1900072_+\|valine--pyruvate-transaminase	gnl\|CDD\|226485	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].	0
NC_017515.1\|WP_002219786.1\|1878028_1880425_-\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NC_017515.1\|WP_002214522.1\|1882959_1883505_+\|pilus-assembly-protein-PilP	gnl\|CDD\|225709	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion].	2.28298e-85
NC_017515.1\|WP_014581550.1\|1891323_1892433_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	9.6763e-121
NC_017515.1\|WP_033914512.1\|1874220_1876173_-\|cytochrome-c-biogenesis-protein	gnl\|CDD\|224252	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones].	9.61002e-164

>NC_017515.1|WP_014581547.1|1883523_1885809_+|type-IV-pilus-secretin-PilQ
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAVSVSKPFTPAKQQAAAPFTESVVSVSAPFSPEKQQAAASAKQQTAAPAKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIMGTAGNSLRY
>NC_017515.1|WP_002214522.1|1882959_1883505_+|pilus-assembly-protein-PilP
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDKNTEQAAAPAAEQN
>NC_017515.1|WP_002217908.1|1882294_1882942_+|type-4a-pilus-biogenesis-protein-PilO
MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFKSQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIPNLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLSRIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK
>NC_017515.1|WP_002221479.1|1881694_1882294_+|PilN-domain-containing-protein
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKVEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELLSIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN
>NC_017515.1|WP_002214517.1|1880576_1881692_+|pilus-assembly-protein-PilM
MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQLSGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQNLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVASRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAAQTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVANYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQCVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL
>NC_017515.1|WP_002219786.1|1878028_1880425_-|penicillin-binding-protein-1A
MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHYQPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWGVARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYEKYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVEETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEKMGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFNRAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRYSGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETTPLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLTLDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
>NC_017515.1|WP_002227620.1|1877278_1877908_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQRKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVKKLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPEEN
>NC_017515.1|WP_002214509.1|1876449_1877073_-|cytochrome-c4
MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGNSGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR
>NC_017515.1|WP_033914512.1|1874220_1876173_-|cytochrome-c-biogenesis-protein
MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGFLGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSLLDVKIAPEVAKRYLEVQGFQGKTINREDGSVLIAAKKGTMNKWGYIFAHVALIVICLGGLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVVFLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNHPLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLEFDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAVEYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGRKRLVADATKGAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYFYEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGFSEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSARSERDLQKEFPKHVESLQRLGKDLNHD
>NC_017515.1|WP_002214504.1|1873040_1874228_-|c-type-cytochrome-biogenesis-protein-CcsB
MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIFLLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAGFTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVFGFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAELVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWDPKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSYGTL
>NC_017515.1|WP_002239999.1|1886986_1887499_+|shikimate-kinase
MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAVAAGVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETLLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRQTVQTLLKRLSR
>NC_017515.1|WP_002232989.1|1887578_1888658_+|3-dehydroquinate-synthase
MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANETVAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIALGGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQPQAVLADLDTLHTLPVRELSAGMAEVIKYGALGDIGFFEWLEQNISGLMTLDREKLAQAVYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAARLSEQLGKISAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGLNRLGEANITEITDTDILRRTLQPYL
>NC_017515.1|WP_014581548.1|1889954_1890797_+|class-II-glutamine-amidotransferase
MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGKGVRLFHDDKPSANSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMWGGYWLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTPSDRVAVIATLPLTRDESWSQLAVDELVMFREGKIILNDRPRHPVYMSVEEGLETARAAGVAV
>NC_017515.1|WP_014581549.1|1890826_1891291_+|transcriptional-repressor-NrdR
MKCPFCTHPDTRVADSRLMEERNAVRRRRHCPNCGKRFGTLETAELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTEHRLYTSGLRDIPSAELADMVLKELLEHNTEAAVRFAALHKRFDNPADFASWLAQAVKTGGKA
>NC_017515.1|WP_014581550.1|1891323_1892433_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MFSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKTVFRKNGNAF
>NC_017515.1|WP_014581551.1|1892627_1894049_+|lipopolysaccharide-biosynthesis-protein
MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQTAAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSEILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVSKLAILLLLPLTVGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRHAPFSPAVLHRGLRYGIPIALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFRAIEENAPPARLSATAESAAALLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPPLFCTLVEISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACAASFWLFFAFKTESSCRLWQPLKRLPLYLHTLFCLTSSAAYTCFGTPANYPLFAGVWAAYLAGCILRHRKDLHKLFHYLKKQGFPL
>NC_017515.1|WP_002227626.1|1894216_1895458_+|NeuD/PglB/VioB-family-sugar-acetyltransferase
MSKFFKRLFDIVASASGLIFLSPVFLILIYLIRKNLDSPVFFFQERPGKDGKPFKMVKFRSMRDALDSDGIPLPDGERLTPFGKKLRAASLDELPELWNILKGEMSLVGPRPLLMQYLPLYDNFQNRRHEMKPGITGWAQVNGRNALSWDEKFACDVWYIDHFSLCLDIKILLLTVKKVLIKEGISAQGEATMPPFTGKRKLAVVGAGGHGKVVADLAAALGRYREIVFLDDRAQGSVNGFSVIGTTLLLENSLSPEQYDVAVAVGNNRIRRQIAEKAAALGFALPVLVHPDATVSPSATVGQGSVVMAKAVVQAGSVLKDGVIVNTAATVDHDCLLNAFVHISPGAHLSGNTHIGEESWIGTGACSRQQIRIGSRATIGAGAVVVRDVSDGMTVAGNPAKPLPRKNPETSTA
>NC_017515.1|WP_002222986.1|1895590_1896766_+|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MLNTFLSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAFAGTRYAVALANGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPTTKAVIVVHLAGMPAEMDGIMALAKEHNLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYDAVYNHEHAPGFRWLHESFGTNWRMMEMQAVIGRIQLKRLPEWTARRRENAAKLAESLGKFSSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVGELNARKVPCYQGSCSEVYLEKAFDNTPWRPKERLTNAVELGDTSLMFLVHPTLTDDEIAFCKKHIEAVLTEAAR
>NC_017515.1|WP_002222987.1|1896813_1898724_+|NADH-dependent-dehydratase-PglD
MNLETLIALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSDEWFDFANWQSFLLTALLTITLFIRMGLYHAVTRFVSFRILTTALAGSLASAVLFFLNTLIFEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEAVKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQRRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMSADIEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLDTEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLECALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGNVLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVLDMGESVKIIDLARQMITLSGLKPNTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRKTGHPRIMTANETMLPWHELSALLDRIRAACDRYDQQAIRTLLINAPTGFAPSDGICDLLWVRETHRKNAV
>NC_017515.1|WP_014581552.1|1898779_1900072_+|valine--pyruvate-transaminase
MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARIPEIDQAFADIFSKLAAEHAVENIGNYSNPQGDAVLIDALTAFLNREYSWNLTADNIALTNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPKIENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLDALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAAPEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLLKRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTQDYPHAGECIRMSIAQDAQTLGKGIAAIGKTVRKLYDNV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_5

1928414-1928582

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGCAGGCGGGAATC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017515_5

>merge|NC_017515|5|1928414-1928582|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATCCGGCTTGTTCGGTTTCGGTTTTTTTTGAGGTTTCGGGCAACTTCTAAACCGTCATTCCCGCGCAGGCGGGAATCTAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGACCCGTCATTCCCGCGTAGGCGGGAATCT

>NC_017515|5|5|1928414-1928582|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATC	CGGCTTGTTCGGTTTCGGTTTTTTTTGAGGTTTCGGGCAACTTCTAAA
CCGTCATTCCCGCGCAGGCGGGAATC	TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGAC
CCGTCATTCCCGCGTAGGCGGGAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_014581555.1\|1924154_1924850_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NC_017515.1\|WP_002223003.1\|1916917_1918213_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_017515.1\|WP_014581560.1\|1941999_1942899_-\|LysR-family-transcriptional-regulator-CrgA	unknown	unknown	gnl\|CDD\|176167
NC_017515.1\|WP_002214626.1\|1945244_1945502_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581557.1\|1929170_1932251_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NC_017515.1\|WP_002223013.1\|1934581_1935715_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_017515.1\|WP_002239306.1\|1943137_1943716_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NC_017515.1\|WP_002223015.1\|1936458_1936848_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NC_017515.1\|WP_002227634.1\|1920422_1921514_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_017515.1\|WP_014581554.1\|1923478_1923910_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NC_017515.1\|WP_002221507.1\|1925480_1925921_-\|MarR-family-adhesin-repressor-NadR	unknown	unknown	gnl\|CDD\|188209
NC_017515.1\|WP_014581561.1\|1944087_1945128_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_017515.1\|WP_002224078.1\|1926263_1926773_-\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NC_017515.1\|WP_041917712.1\|1927137_1928217_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NC_017515.1\|WP_002227636.1\|1921627_1923304_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NC_017515.1\|WP_002214615.1\|1937436_1938000_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_017515.1\|WP_002214617.1\|1938002_1938551_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002236418.1\|1924865_1925366_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	unknown	unknown	gnl\|CDD\|131349
NC_017515.1\|WP_014581553.1\|1918275_1920153_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017515.1\|WP_014581559.1\|1938557_1941773_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_014581555.1\|1924154_1924850_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	7.1848e-98
NC_017515.1\|WP_002223003.1\|1916917_1918213_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_017515.1\|WP_014581560.1\|1941999_1942899_-\|LysR-family-transcriptional-regulator-CrgA	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.66115e-123
NC_017515.1\|WP_014581557.1\|1929170_1932251_+\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_017515.1\|WP_002223013.1\|1934581_1935715_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_017515.1\|WP_002239306.1\|1943137_1943716_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.10141e-60
NC_017515.1\|WP_002223015.1\|1936458_1936848_+\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	3.33205e-69
NC_017515.1\|WP_002227634.1\|1920422_1921514_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_017515.1\|WP_014581554.1\|1923478_1923910_+\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	6.57146e-54
NC_017515.1\|WP_002221507.1\|1925480_1925921_-\|MarR-family-adhesin-repressor-NadR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	7.34663e-62
NC_017515.1\|WP_014581561.1\|1944087_1945128_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_017515.1\|WP_002224078.1\|1926263_1926773_-\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	5.70546e-51
NC_017515.1\|WP_041917712.1\|1927137_1928217_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.41729e-144
NC_017515.1\|WP_002227636.1\|1921627_1923304_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NC_017515.1\|WP_002214615.1\|1937436_1938000_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.78323e-38
NC_017515.1\|WP_002236418.1\|1924865_1925366_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	gnl\|CDD\|131349	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component. This model identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase. This enzyme catalyzes the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.	3.96067e-97
NC_017515.1\|WP_014581553.1\|1918275_1920153_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.23216e-73
NC_017515.1\|WP_014581559.1\|1938557_1941773_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NC_017515.1|WP_041917712.1|1927137_1928217_+|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHFGFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDAAFQIALSIADKGKDFSSRFPKIVVE
>NC_017515.1|WP_002224078.1|1926263_1926773_-|protein-disulfide-oxidoreductase
MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLTLLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSAEVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRARIFQADVFG
>NC_017515.1|WP_002221507.1|1925480_1925921_-|MarR-family-adhesin-repressor-NadR
MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS
>NC_017515.1|WP_002236418.1|1924865_1925366_-|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component
MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALVHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQFRFLD
>NC_017515.1|WP_014581555.1|1924154_1924850_-|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQAGFTEIVINHAWLGRQIEEALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGDAPFLVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLADNPPHNSDGDFSLLPDGSVRPEVNGGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRNEMRQNRVSGQKHTGLWLDVGTVCRLKEAQALAGAWK
>NC_017515.1|WP_014581554.1|1923478_1923910_+|EamA-family-transporter
MSSNAWLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVILAALLLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPVDKFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR
>NC_017515.1|WP_002227636.1|1921627_1923304_-|formate--tetrahydrofolate-ligase
MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINPAEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPKRVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKERLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANIAHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRALKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELAMIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRITVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDEHGVIHGLF
>NC_017515.1|WP_002227634.1|1920422_1921514_-|redox-regulated-ATPase-YchF
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELEEDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAGKMRVEGKEYVVQDGDVMHFLFNV
>NC_017515.1|WP_014581553.1|1918275_1920153_-|acyltransferase
MSQALPYRPDIDTLRAAAVLSVIVFHIEKDWLPGGFLGVDIFFVISGFLMTTILHREMSGGGRFSLKAFYIRRIKRILPAFFAVLAATLAGGFFLFTKDDFFLLWKSALTALGFASNLYFARGKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVARKSLRVQFGFLAALCALSLAASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRYRQQRNLAVGRCCAAAGALFSSCILSACLFAYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKFFQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAVVLILLLSLFSYHCIEKPFKKWQGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNTGKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASRVFQNWAACRAVYRYAEEHLPRYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHKLSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQALRPDDESTLKANARIRELAAKYPNVYIIDAAAYIPADFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH
>NC_017515.1|WP_002223003.1|1916917_1918213_-|tyrosine--tRNA-ligase
MSVIQDLQSRGLIAQTTDIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSIEEIDAIEAKDKASGTKPEAQRILAEEMTRLIHGEAALQAAQRISESLFAEDQSSLTESDFEQLALDGLPVFEISDGINAVEALVKTGLASSNKEARGFVNAKAVLLNGKPAEANNPNHAAERPDDACLLTDEHKRFGKYTILRRGKRNHALLVWK
>NC_017515.1|WP_014581557.1|1929170_1932251_+|pilus-assembly-protein
MNKTLKRRVFRHTALYAAILMFSHTGGGGGAMAQTHQYAIIMNERKQPEVKSNVPSSIKDKDRKREYTHYKYKTGGGSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRDSTGCPKLVYKTRFSFDNPDLAKTGGGLDRHTEPSRDNSPIYKLKDHPWLGVSFNLGSENTVKNGNSFNKLISSFSENNNNQTIVSTTESHPISLGDGQREHTAVVYYLNAKLHLLDKKGIKDITDKTVQLGVLKPSIDVRKGAGWLSFWASWDIKDTGQIPVKLGLQQVKAGRCINKPNPNPKAQALSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASEIKSKEPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGNDTFGIVSEGSFMPDDSEWKKVLLPWTVRAFNDDGQFNTVNKEENNGKPKYSQKYRSRNNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKKSGGDDRNYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKSYVGDRYGVDGGFVLRQVEWKGQNRVFMFGAMGFGGRGAYALDLTKAENGDPTAVSLFDVKHDNNGKNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSGNNPTSWSARAIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNETDTGTAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAIAQYSGHKKGTNGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREVFY
>NC_017515.1|WP_002223013.1|1934581_1935715_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAIGAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTLQGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA
>NC_017515.1|WP_002223015.1|1936458_1936848_+|DUF559-domain-containing-protein
MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEKQYAQ
>NC_017515.1|WP_002214615.1|1937436_1938000_+|ComF-family-protein
MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGEWVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDRLNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGATLEISTEKLFSKNARSVIVLAMTKTRG
>NC_017515.1|WP_002214617.1|1938002_1938551_+|hypothetical-protein
MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKAIQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYGFILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLASILEKGNTFLKSYVTKQPSLIQE
>NC_017515.1|WP_014581559.1|1938557_1941773_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEVREHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGSGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTAQYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN
>NC_017515.1|WP_014581560.1|1941999_1942899_-|LysR-family-transcriptional-regulator-CrgA
MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNNLCG
>NC_017515.1|WP_002239306.1|1943137_1943716_+|NAD(P)H-dependent-oxidoreductase
MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRLSTFLCNDVVKNPQVEKYLADYQAHLEKVFG
>NC_017515.1|WP_014581561.1|1944087_1945128_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGDLSDYVGEGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKPGMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDSRYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIEEHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTDIFITPGYRFNVADRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGDAMILGRNEGVVR
>NC_017515.1|WP_002214626.1|1945244_1945502_+|hypothetical-protein
MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTVSEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_6

1928818-1928923

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGCAGGCGGGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_6

>merge|NC_017515|6|1928818-1928923|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATCCAGACCTGTCGGAACGGAAACTTATCGGATAAACGGTTTCTCTAGATTCCGCATCCTAGATTCCCGCCTGCGCGGGAATG

>NC_017515|6|6|1928818-1928923|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATC	CAGACCTGTCGGAACGGAAACTTATCGGATAAACGGTTTCTCTAGATTCCGCAT
CCTAGATTCCCGCCTGCGCGGGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_014581555.1\|1924154_1924850_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NC_017515.1\|WP_002223003.1\|1916917_1918213_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_017515.1\|WP_014581560.1\|1941999_1942899_-\|LysR-family-transcriptional-regulator-CrgA	unknown	unknown	gnl\|CDD\|176167
NC_017515.1\|WP_002214626.1\|1945244_1945502_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581557.1\|1929170_1932251_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NC_017515.1\|WP_002223013.1\|1934581_1935715_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_017515.1\|WP_002239306.1\|1943137_1943716_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NC_017515.1\|WP_002223015.1\|1936458_1936848_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NC_017515.1\|WP_002227634.1\|1920422_1921514_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_017515.1\|WP_014581554.1\|1923478_1923910_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NC_017515.1\|WP_002221507.1\|1925480_1925921_-\|MarR-family-adhesin-repressor-NadR	unknown	unknown	gnl\|CDD\|188209
NC_017515.1\|WP_014581561.1\|1944087_1945128_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_017515.1\|WP_002224078.1\|1926263_1926773_-\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NC_017515.1\|WP_041917712.1\|1927137_1928217_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NC_017515.1\|WP_002227636.1\|1921627_1923304_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NC_017515.1\|WP_002214615.1\|1937436_1938000_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_017515.1\|WP_002214617.1\|1938002_1938551_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002236418.1\|1924865_1925366_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	unknown	unknown	gnl\|CDD\|131349
NC_017515.1\|WP_014581553.1\|1918275_1920153_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017515.1\|WP_014581559.1\|1938557_1941773_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_014581555.1\|1924154_1924850_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	7.1848e-98
NC_017515.1\|WP_002223003.1\|1916917_1918213_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_017515.1\|WP_014581560.1\|1941999_1942899_-\|LysR-family-transcriptional-regulator-CrgA	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.66115e-123
NC_017515.1\|WP_014581557.1\|1929170_1932251_+\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_017515.1\|WP_002223013.1\|1934581_1935715_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_017515.1\|WP_002239306.1\|1943137_1943716_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.10141e-60
NC_017515.1\|WP_002223015.1\|1936458_1936848_+\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	3.33205e-69
NC_017515.1\|WP_002227634.1\|1920422_1921514_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_017515.1\|WP_014581554.1\|1923478_1923910_+\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	6.57146e-54
NC_017515.1\|WP_002221507.1\|1925480_1925921_-\|MarR-family-adhesin-repressor-NadR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	7.34663e-62
NC_017515.1\|WP_014581561.1\|1944087_1945128_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_017515.1\|WP_002224078.1\|1926263_1926773_-\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	5.70546e-51
NC_017515.1\|WP_041917712.1\|1927137_1928217_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.41729e-144
NC_017515.1\|WP_002227636.1\|1921627_1923304_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NC_017515.1\|WP_002214615.1\|1937436_1938000_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.78323e-38
NC_017515.1\|WP_002236418.1\|1924865_1925366_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	gnl\|CDD\|131349	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component. This model identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase. This enzyme catalyzes the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.	3.96067e-97
NC_017515.1\|WP_014581553.1\|1918275_1920153_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.23216e-73
NC_017515.1\|WP_014581559.1\|1938557_1941773_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NC_017515.1|WP_041917712.1|1927137_1928217_+|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHFGFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDAAFQIALSIADKGKDFSSRFPKIVVE
>NC_017515.1|WP_002224078.1|1926263_1926773_-|protein-disulfide-oxidoreductase
MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLTLLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSAEVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRARIFQADVFG
>NC_017515.1|WP_002221507.1|1925480_1925921_-|MarR-family-adhesin-repressor-NadR
MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS
>NC_017515.1|WP_002236418.1|1924865_1925366_-|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component
MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALVHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQFRFLD
>NC_017515.1|WP_014581555.1|1924154_1924850_-|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQAGFTEIVINHAWLGRQIEEALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGDAPFLVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLADNPPHNSDGDFSLLPDGSVRPEVNGGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRNEMRQNRVSGQKHTGLWLDVGTVCRLKEAQALAGAWK
>NC_017515.1|WP_014581554.1|1923478_1923910_+|EamA-family-transporter
MSSNAWLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVILAALLLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPVDKFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR
>NC_017515.1|WP_002227636.1|1921627_1923304_-|formate--tetrahydrofolate-ligase
MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINPAEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPKRVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKERLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANIAHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRALKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELAMIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRITVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDEHGVIHGLF
>NC_017515.1|WP_002227634.1|1920422_1921514_-|redox-regulated-ATPase-YchF
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELEEDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAGKMRVEGKEYVVQDGDVMHFLFNV
>NC_017515.1|WP_014581553.1|1918275_1920153_-|acyltransferase
MSQALPYRPDIDTLRAAAVLSVIVFHIEKDWLPGGFLGVDIFFVISGFLMTTILHREMSGGGRFSLKAFYIRRIKRILPAFFAVLAATLAGGFFLFTKDDFFLLWKSALTALGFASNLYFARGKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVARKSLRVQFGFLAALCALSLAASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRYRQQRNLAVGRCCAAAGALFSSCILSACLFAYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKFFQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAVVLILLLSLFSYHCIEKPFKKWQGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNTGKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASRVFQNWAACRAVYRYAEEHLPRYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHKLSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQALRPDDESTLKANARIRELAAKYPNVYIIDAAAYIPADFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH
>NC_017515.1|WP_002223003.1|1916917_1918213_-|tyrosine--tRNA-ligase
MSVIQDLQSRGLIAQTTDIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSIEEIDAIEAKDKASGTKPEAQRILAEEMTRLIHGEAALQAAQRISESLFAEDQSSLTESDFEQLALDGLPVFEISDGINAVEALVKTGLASSNKEARGFVNAKAVLLNGKPAEANNPNHAAERPDDACLLTDEHKRFGKYTILRRGKRNHALLVWK
>NC_017515.1|WP_014581557.1|1929170_1932251_+|pilus-assembly-protein
MNKTLKRRVFRHTALYAAILMFSHTGGGGGAMAQTHQYAIIMNERKQPEVKSNVPSSIKDKDRKREYTHYKYKTGGGSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRDSTGCPKLVYKTRFSFDNPDLAKTGGGLDRHTEPSRDNSPIYKLKDHPWLGVSFNLGSENTVKNGNSFNKLISSFSENNNNQTIVSTTESHPISLGDGQREHTAVVYYLNAKLHLLDKKGIKDITDKTVQLGVLKPSIDVRKGAGWLSFWASWDIKDTGQIPVKLGLQQVKAGRCINKPNPNPKAQALSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASEIKSKEPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGNDTFGIVSEGSFMPDDSEWKKVLLPWTVRAFNDDGQFNTVNKEENNGKPKYSQKYRSRNNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKKSGGDDRNYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKSYVGDRYGVDGGFVLRQVEWKGQNRVFMFGAMGFGGRGAYALDLTKAENGDPTAVSLFDVKHDNNGKNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSGNNPTSWSARAIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNETDTGTAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAIAQYSGHKKGTNGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREVFY
>NC_017515.1|WP_002223013.1|1934581_1935715_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAIGAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTLQGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA
>NC_017515.1|WP_002223015.1|1936458_1936848_+|DUF559-domain-containing-protein
MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEKQYAQ
>NC_017515.1|WP_002214615.1|1937436_1938000_+|ComF-family-protein
MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGEWVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDRLNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGATLEISTEKLFSKNARSVIVLAMTKTRG
>NC_017515.1|WP_002214617.1|1938002_1938551_+|hypothetical-protein
MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKAIQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYGFILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLASILEKGNTFLKSYVTKQPSLIQE
>NC_017515.1|WP_014581559.1|1938557_1941773_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEVREHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGSGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTAQYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN
>NC_017515.1|WP_014581560.1|1941999_1942899_-|LysR-family-transcriptional-regulator-CrgA
MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNNLCG
>NC_017515.1|WP_002239306.1|1943137_1943716_+|NAD(P)H-dependent-oxidoreductase
MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRLSTFLCNDVVKNPQVEKYLADYQAHLEKVFG
>NC_017515.1|WP_014581561.1|1944087_1945128_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGDLSDYVGEGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKPGMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDSRYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIEEHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTDIFITPGYRFNVADRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGDAMILGRNEGVVR
>NC_017515.1|WP_002214626.1|1945244_1945502_+|hypothetical-protein
MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTVSEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_7

2009340-2009444

Orphan

I-E

Consensus_repeat	Method
AACGGACTGGATTCCCGCCTGCGCGGGAATGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_7

>merge|NC_017515|7|2009340-2009444|CRISPRCasFinder
AACGGACTGGATTCCCGCCTGCGCGGGAATGACGAAGTGGAAGTTACCCGAAACTTAAAACAAGCGAAACCGAACGGACTAGATTCCCGCCTGCGCGGGAATGAC

>NC_017515|7|7|2009340-2009444|CRISPRCasFinder
AACGGACTGGATTCCCGCCTGCGCGGGAATGAC	GAAGTGGAAGTTACCCGAAACTTAAAACAAGCGAAACCG
AACGGACTAGATTCCCGCCTGCGCGGGAATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002223081.1\|2007572_2008298_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NC_017515.1\|WP_002227676.1\|1997341_1998268_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NC_017515.1\|WP_014575577.1\|2012360_2012762_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_017515.1\|WP_002219866.1\|2011416_2012349_-\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037
NC_017515.1\|WP_002224116.1\|2015349_2016255_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_017515.1\|WP_002218049.1\|2018396_2019272_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_017515.1\|WP_002260467.1\|2006569_2007364_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NC_017515.1\|WP_002221462.1\|2016528_2016951_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NC_017515.1\|WP_002218047.1\|2016961_2018359_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_017515.1\|WP_002235017.1\|2003472_2003964_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_017515.1\|WP_002227675.1\|1996944_1997316_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|225863
NC_017515.1\|WP_002214789.1\|2019296_2020844_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_017515.1\|WP_002227678.1\|1998405_2000271_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NC_017515.1\|WP_014575572.1\|1995935_1996898_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_017515.1\|WP_014581572.1\|2012778_2014842_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_017515.1\|WP_002223072.1\|2000370_2001936_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_017515.1\|WP_002227682.1\|2009487_2010330_-\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NC_017515.1\|WP_014581573.1\|2014862_2015273_-\|YggL-family-protein	unknown	unknown	gnl\|CDD\|225712
NC_017515.1\|WP_002223073.1\|2001997_2002744_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NC_017515.1\|WP_002227679.1\|2004613_2005621_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002223081.1\|2007572_2008298_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.31559e-94
NC_017515.1\|WP_002227676.1\|1997341_1998268_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	4.70647e-125
NC_017515.1\|WP_014575577.1\|2012360_2012762_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.56796e-20
NC_017515.1\|WP_002219866.1\|2011416_2012349_-\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	1.45679e-95
NC_017515.1\|WP_002224116.1\|2015349_2016255_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_017515.1\|WP_002218049.1\|2018396_2019272_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.27464e-143
NC_017515.1\|WP_002260467.1\|2006569_2007364_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	5.17738e-85
NC_017515.1\|WP_002221462.1\|2016528_2016951_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	5.38764e-51
NC_017515.1\|WP_002218047.1\|2016961_2018359_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NC_017515.1\|WP_002235017.1\|2003472_2003964_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.27647e-45
NC_017515.1\|WP_002227675.1\|1996944_1997316_+\|DUF1294-domain-containing-protein	gnl\|CDD\|225863	COG3326, COG3326, Predicted membrane protein [Function unknown].	8.82911e-30
NC_017515.1\|WP_002214789.1\|2019296_2020844_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_017515.1\|WP_002227678.1\|1998405_2000271_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NC_017515.1\|WP_014575572.1\|1995935_1996898_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NC_017515.1\|WP_014581572.1\|2012778_2014842_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_017515.1\|WP_002223072.1\|2000370_2001936_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_017515.1\|WP_002227682.1\|2009487_2010330_-\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	3.28145e-85
NC_017515.1\|WP_014581573.1\|2014862_2015273_-\|YggL-family-protein	gnl\|CDD\|225712	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown].	2.49171e-49
NC_017515.1\|WP_002223073.1\|2001997_2002744_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	7.83531e-133
NC_017515.1\|WP_002227679.1\|2004613_2005621_+\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	6.24497e-65

>NC_017515.1|WP_002223081.1|2007572_2008298_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPRFHLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFDGKGKAHAARLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAPLAALAAMQTLWGDFA
>NC_017515.1|WP_002260467.1|2006569_2007364_-|inositol-monophosphatase-family-protein
MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQTAFAAALPLLIDCPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAVSVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIKYLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIFEEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVEWIRENQ
>NC_017515.1|WP_002227679.1|2004613_2005621_+|IS5-family-transposase
MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKNRYLRDHRGRPAYPLLSMFKAVLPGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYSTLCRYRNWLAQDDTLSELLKLINRQLTEKGLKIEKASAAVVDATIIQTAGSKQRQTIEVDEEGQVSGQTTPSKDSDARWIKKNGLYKLGYKQHTRTDAEGYIEKLHITPANAHECKHLSPLLEGLPEGTTVYADKGYDSAENRQHLEEHQLLDGIMRKACRNRPLSEVQTKRNRYLSKTRYVVEQSFGTLHRKFRYARAAYFGLIKVSAQSHLKAMCLNLLKAANRLSAPAAA
>NC_017515.1|WP_002235017.1|2003472_2003964_-|transposase
MKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSKYLIGGNLRLWQKRFWEHTIRDEADFSCHFDYLHFNPVKHGYVGQISDWRFSTFHRYVKQGMYPHNWGGGNADFSIGYD
>NC_017515.1|WP_002223073.1|2001997_2002744_+|3-oxoacyl-ACP-reductase-FabG
MSTQDLNGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESGAAAISERLAQWGSEGRVLNSAEPETIESLIADIEKAFGKLDILVNNAGITRDNLLMRMKEEEWDDIMQVNLKSVFRASKAVLRGMMKQRSGRIINITSVVGVMGNAGQTNYAAAKAGLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQTFTAQTALGRFGDAQDIADAVLFLASDQAKYITGQTLHVNGGMLMP
>NC_017515.1|WP_002223072.1|2000370_2001936_+|glutamine-hydrolyzing-GMP-synthase
MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKAFNPKGIILSGGPNSVYESDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVQPGNQREFGYAQVKTIDSELTRGIQDGEPNTLDVWMSHGDKVSKLPDGFAVIGNTPSCPIAMMENAEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPGWTMPNYIEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNESKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPVKSVGVMGDGRTYDYVIALRAVITSDFMTAHWAELPYSLLGKVSNRIINEVKGINRVVYDVSGKPPATIEWE
>NC_017515.1|WP_002227678.1|1998405_2000271_+|lipid-A-export-permease/ATP-binding-protein-MsbA
MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIIAALIAIFGVAATESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVPLFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLMNMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRYYRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSKKITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKSLANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKALDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA
>NC_017515.1|WP_002227676.1|1997341_1998268_+|ACP-S-malonyltransferase
MSFAFFFPGQGSQSLGMMNGFTGQAVVKNTFDEASAILDQDLWAMINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGALDFANAVKLVRLRAELMQSAVPQGVGAMAAILGLEDGQVKAICAESAQGEVVEAVNFNSPGQVVIAGNAAAVGRAMTAAKEAGAKRALPLPVSVPSHCSLMKPTADKLAEALKTVEIKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPGKVLAGLAKRINKAAACSALTDAGQVAAFIEAH
>NC_017515.1|WP_002227675.1|1996944_1997316_+|DUF1294-domain-containing-protein
MKRQAFFKLMACAAFLSAISLRLPVLGACYAILSLYAFALYGIDKRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLATCILIDYFVPPELFVKLGQHL
>NC_017515.1|WP_014575572.1|1995935_1996898_+|ketoacyl-ACP-synthase-III
MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRHIAAENEKTSDLAAEAARRALDATGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGITNGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFGDGAGAVVLSAADKPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKFAVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHGNTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY
>NC_017515.1|WP_002227682.1|2009487_2010330_-|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGAHDIPFQFFDALMPSEALEQAMAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLAEDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISREAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKNSMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRVISFK
>NC_017515.1|WP_002219866.1|2011416_2012349_-|glycosyltransferase-family-8-protein
MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEEWRGKLAVPHRMFSTKRMLQRWRRKLSARFLRKIY
>NC_017515.1|WP_014575577.1|2012360_2012762_-|glycosyltransferase-family-2-protein
MPSEAFRRHRAYRENKLQPLVSVLICAYNAEKYFAQSLAAVVNQTWRNLEILIVDDGSTDGTLAIAKDFQKWDSRIKILAHDRLLNRKQQRRDSPANTFKHRLIRALTKISREREKRRQRREQLIGKIIVPFQ
>NC_017515.1|WP_014581572.1|2012778_2014842_-|glycine--tRNA-ligase-subunit-beta
MMTQTLLIELLTEELPPKALNNLGNHFAASVAEGLEKAQLIAGAAEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAVKDGAPTKALEGFARGAGAKIEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINAAVKKLPIPKVMRWGSSTFTFVRPVHGLIVLHGGDIVNVSVLGLQSGNQTLGHRFLSDGEITIENADSYAEQMRGQGKVVASFAERKAAIQTALEGQARRLNATVAADEALLDKVTALVEYPVVLEAGFEEHFLAVPQECLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTADPSHIIQGNERVLRARLSDAEFFYKQDQKATLESRLPKLANVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAARLAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAIEQHYQPRFAGDNLPNGKVATAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFDSFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDVVAKLQAVAAFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADIALLGE
>NC_017515.1|WP_014581573.1|2014862_2015273_-|YggL-family-protein
MPVYFRIPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAEDDAEAFGRFMDELIAYLAANGLEMAGGGDCGDFSCLFQKSGARSLGETEKKAIISWLAGREDVATLHATPLVDGFYGDDGWESYSETYKQAD
>NC_017515.1|WP_002224116.1|2015349_2016255_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRALGPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGIDPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITYGIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQFNDYEAQAKRLLAEENASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRALSRAVAQKYVESREKLGFPLMKANAA
>NC_017515.1|WP_002221462.1|2016528_2016951_-|F0F1-ATP-synthase-subunit-epsilon
MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSLVRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDQARAEEAKKAAEAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK
>NC_017515.1|WP_002218047.1|2016961_2018359_-|F0F1-ATP-synthase-subunit-beta
MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
>NC_017515.1|WP_002218049.1|2018396_2019272_-|F0F1-ATP-synthase-subunit-gamma
MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARPYAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLAQVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQRYEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALAVLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAAITTELSEIVAGAAAV
>NC_017515.1|WP_002214789.1|2019296_2020844_-|F0F1-ATP-synthase-subunit-alpha
MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGLSDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRELVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVGRGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAMEHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGGIRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWAINNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFKSSYAYQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_8

2046326-2046409

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGAAAGCGGGAATCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_8

>merge|NC_017515|8|2046326-2046409|CRISPRCasFinder
CCGTCATTCCCGCGAAAGCGGGAATCTAGGACGCAGGGTTAAGAAAACCTACATCCCGTCATTCCCGCGAAAGCGGGAATCTAG

>NC_017515|8|8|2046326-2046409|CRISPRCasFinder
CCGTCATTCCCGCGAAAGCGGGAATCTAG	GACGCAGGGTTAAGAAAACCTACATC
CCGTCATTCCCGCGAAAGCGGGAATCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002233157.1\|2055760_2055853_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NC_017515.1\|WP_002245234.1\|2055912_2057133_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NC_017515.1\|WP_002214868.1\|2052843_2053134_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_017515.1\|WP_002248549.1\|2051116_2052751_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_017515.1\|WP_002221642.1\|2041807_2042608_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224052
NC_017515.1\|WP_014581576.1\|2044538_2045981_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143407
NC_017515.1\|WP_002214853.1\|2043728_2043905_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002221641.1\|2040982_2041759_-\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	unknown	unknown	gnl\|CDD\|223838
NC_017515.1\|WP_012779597.1\|2048903_2050421_-\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NC_017515.1\|WP_002214840.1\|2038651_2039479_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NC_017515.1\|WP_002221640.1\|2039475_2039754_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225655
NC_017515.1\|WP_002219885.1\|2043905_2044295_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581578.1\|2053362_2054016_+\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|226201
NC_017515.1\|WP_014581577.1\|2047063_2048845_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|223225
NC_017515.1\|WP_002245233.1\|2054228_2055764_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NC_017515.1\|WP_002214854.1\|2044303_2044504_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002219880.1\|2039810_2040401_-\|phospholipid-binding-protein-MlaC	unknown	unknown	gnl\|CDD\|225410
NC_017515.1\|WP_002218099.1\|2057384_2057708_+\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NC_017515.1\|WP_002226757.1\|2057143_2057314_-\|lipoprotein	unknown	unknown	gnl\|CDD\|338858
NC_017515.1\|WP_002223101.1\|2040437_2040932_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002233157.1\|2055760_2055853_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	3.9378e-05
NC_017515.1\|WP_002214868.1\|2052843_2053134_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.91348e-50
NC_017515.1\|WP_002248549.1\|2051116_2052751_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_017515.1\|WP_002221642.1\|2041807_2042608_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	6.89668e-144
NC_017515.1\|WP_014581576.1\|2044538_2045981_+\|aldehyde-dehydrogenase	gnl\|CDD\|143407	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.	0
NC_017515.1\|WP_002245234.1\|2055912_2057133_-\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NC_017515.1\|WP_002221641.1\|2040982_2041759_-\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	6.07394e-90
NC_017515.1\|WP_002245233.1\|2054228_2055764_+\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NC_017515.1\|WP_002214840.1\|2038651_2039479_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	2.75871e-103
NC_017515.1\|WP_002221640.1\|2039475_2039754_-\|STAS-domain-containing-protein	gnl\|CDD\|225655	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only].	2.58801e-34
NC_017515.1\|WP_014581578.1\|2053362_2054016_+\|IS1595-family-transposase	gnl\|CDD\|226201	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.10601e-43
NC_017515.1\|WP_014581577.1\|2047063_2048845_+\|chorismate-binding-protein	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	4.45744e-116
NC_017515.1\|WP_012779597.1\|2048903_2050421_-\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	7.58738e-86
NC_017515.1\|WP_002219880.1\|2039810_2040401_-\|phospholipid-binding-protein-MlaC	gnl\|CDD\|225410	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism].	4.87932e-67
NC_017515.1\|WP_002218099.1\|2057384_2057708_+\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	1.60863e-45
NC_017515.1\|WP_002226757.1\|2057143_2057314_-\|lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	3.19315e-05
NC_017515.1\|WP_002223101.1\|2040437_2040932_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	8.69376e-73

>NC_017515.1|WP_014581576.1|2044538_2045981_+|aldehyde-dehydrogenase
MKQLAMYINGRFENDFNGEWRDVLNPSTEETIAREPKGGKADVDRAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERADELTDTIVAEGGKTKDLARVEVMFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVIAGILPWNFPFFLIARKMGPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQVDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVGNTGQICNCAERVYVHSCLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVKAVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSTFDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAGWKKSGIGGADGKHGLEEYLQTQVVYLETDI
>NC_017515.1|WP_002214854.1|2044303_2044504_+|hypothetical-protein
MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYADIVASRLNISKETCTVIYLGIN
>NC_017515.1|WP_002219885.1|2043905_2044295_+|hypothetical-protein
MLYKCKIKKLDNTIEEAVLIEINGYELHCFISYCPFKIFENQFYEVELSYEIFNDYILDKSTSNIGFRKIDDSFKYEITAELKNNHLTLQNIQFEEDEYLINYSYLDNCLVTLTADRISVSFIREIQAA
>NC_017515.1|WP_002214853.1|2043728_2043905_+|hypothetical-protein
MSGYVQFLGTDSKGQSKFIFVGTNENGSITTIHTKSGKDFWRTLNNNPKNKTIYPKAR
>NC_017515.1|WP_002221642.1|2041807_2042608_-|ABC-transporter-ATP-binding-protein
MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSGKTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFDNIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALDPEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAHGEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG
>NC_017515.1|WP_002221641.1|2040982_2041759_-|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE
MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVRQVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLAAILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIFNVAGIFGAYLVGVSWLSLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQGFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD
>NC_017515.1|WP_002223101.1|2040437_2040932_-|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGNSGKTYTVYADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAEKAAE
>NC_017515.1|WP_002219880.1|2039810_2040401_-|phospholipid-binding-protein-MlaC
MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKSGDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK
>NC_017515.1|WP_002221640.1|2039475_2039754_-|STAS-domain-containing-protein
MHTELNNGTLHISGDITVKTLTGEAFERFQQQCRLKETIAVDFGGVKRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS
>NC_017515.1|WP_002214840.1|2038651_2039479_-|VacJ-family-lipoprotein
MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRARQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP
>NC_017515.1|WP_014581577.1|2047063_2048845_+|chorismate-binding-protein
MPYFALFDDAVSGRAKRYQNYVESRFFRPEELDALDGALQKGWQKGLHSVLFADYEFGLPLTGVESERGGNLALHWFADCTDTDAASWLARHSDDLPAGISTPQSSVSETDYLDRIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAVLSHLPDAEGQSAWTLCFSPELFLKIGSDGTISTEPMKGTAPILGDGQDERRAAELQADPKNRAENVMIVDLLRNDFGKIAQTGKVCVPEPFKVSRFGSVWQMTSTIQAQALPDTSFADILRAAFPCGSITGAPKKMSMQIIESLETEARGLYTGSIGYLKPCAGGLGFEGAFNVVIRTLSLTPLSDGIYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETLRAENGRCTLLDRHLCRLKTSAQALNLPLPDGCENQIKQYIADLPDGAFRVKALLASDGISLSRAVLNRLTDKQRVIISPTILPAQNYLRRFKTTCRTVFDQAWQTAETQGAFDSLFFNSDGILLEGGRSNVFVKHRGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETHITQKTLQEAEEIRLSNALRGVFAAALA
>NC_017515.1|WP_012779597.1|2048903_2050421_-|DUF560-domain-containing-protein
MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRSVSDKWAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYDAVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERHFAEAAKLDLPAPVLENVGRFRKKTEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGRQICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRAYLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTYRPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSLAKRLGESATVFGGWQFVRFVPKRETVGGAVNNAAYQRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGVAAFSTEAQRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF
>NC_017515.1|WP_002248549.1|2051116_2052751_-|chaperonin-GroEL
MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMGGMM
>NC_017515.1|WP_002214868.1|2052843_2053134_-|co-chaperone-GroES
MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK
>NC_017515.1|WP_014581578.1|2053362_2054016_+|IS1595-family-transposase
MKITHCKLKKKVQKELLRFFVLEVTAHSAADILGIHPNSAALFYRKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRGYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI
>NC_017515.1|WP_002245233.1|2054228_2055764_+|sodium-dependent-transporter
MSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGGGAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVICIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAGVWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWSKLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAGIGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAGVTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFVNTYGIVAAGFAYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFKDTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQGEEK
>NC_017515.1|WP_002233157.1|2055760_2055853_+|methionine/alanine-import-family-NSS-transporter-small-subunit
MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE
>NC_017515.1|WP_002245234.1|2055912_2057133_-|diaminopimelate-decarboxylase
MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELVRVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYKDESVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKNISPLTANIVGPICETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVDGNEYRLIRRRETLEQQMANELACL
>NC_017515.1|WP_002226757.1|2057143_2057314_-|lipoprotein
MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQLQSKPQSAPPTQK
>NC_017515.1|WP_002218099.1|2057384_2057708_+|iron-donor-protein-CyaY
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDSRDFYDVLNEALSAASGEAVEIEEL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_9

2226990-2227070

Orphan

I-E

Consensus_repeat	Method
TCATTCCCGCAAAAGCGGGAATCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_9

>merge|NC_017515|9|2226990-2227070|CRISPRCasFinder
TCATTCCCGCAAAAGCGGGAATCTAGGACGCAGGGTTAAGAAAACCTACATCCCATCATTCCCGCAAAAGCGGGAATCTAG

>NC_017515|9|9|2226990-2227070|CRISPRCasFinder
TCATTCCCGCAAAAGCGGGAATCTAG	GACGCAGGGTTAAGAAAACCTACATCCCA
TCATTCCCGCAAAAGCGGGAATCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002223215.1\|2217178_2217394_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002223219.1\|2222524_2226694_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NC_017515.1\|WP_002221729.1\|2216970_2217186_+\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NC_017515.1\|WP_002219993.1\|2212082_2212457_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002223225.1\|2235127_2235715_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564
NC_017515.1\|WP_002223221.1\|2227788_2229246_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NC_017515.1\|WP_002235300.1\|2220622_2222470_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_017515.1\|WP_002223223.1\|2231344_2232238_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NC_017515.1\|WP_002220005.1\|2234359_2235106_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NC_017515.1\|WP_033908675.1\|2236140_2236581_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002215152.1\|2235720_2235900_+\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NC_017515.1\|WP_014581602.1\|2217468_2218752_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NC_017515.1\|WP_014581599.1\|2213413_2214400_-\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689
NC_017515.1\|WP_002223224.1\|2233102_2233411_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_014581600.1\|2214439_2215240_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NC_017515.1\|WP_002221731.1\|2218863_2220093_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NC_017515.1\|WP_002218249.1\|2233527_2234370_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NC_017515.1\|WP_002227769.1\|2230138_2231242_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_017515.1\|WP_014581601.1\|2215552_2216896_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NC_017515.1\|WP_002218247.1\|2232579_2233029_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002223219.1\|2222524_2226694_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017515.1\|WP_002221729.1\|2216970_2217186_+\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	7.07695e-09
NC_017515.1\|WP_002223223.1\|2231344_2232238_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	7.32936e-63
NC_017515.1\|WP_002223225.1\|2235127_2235715_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	1.88454e-125
NC_017515.1\|WP_002223221.1\|2227788_2229246_+\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017515.1\|WP_002235300.1\|2220622_2222470_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	4.01698e-173
NC_017515.1\|WP_002218247.1\|2232579_2233029_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.78246e-27
NC_017515.1\|WP_002220005.1\|2234359_2235106_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	5.3181e-115
NC_017515.1\|WP_014581602.1\|2217468_2218752_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	2.66773e-16
NC_017515.1\|WP_014581599.1\|2213413_2214400_-\|S49-family-peptidase	gnl\|CDD\|223689	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.30765e-79
NC_017515.1\|WP_002215152.1\|2235720_2235900_+\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000444788
NC_017515.1\|WP_014581600.1\|2214439_2215240_-\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	3.15949e-88
NC_017515.1\|WP_002221731.1\|2218863_2220093_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NC_017515.1\|WP_002218249.1\|2233527_2234370_+\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	6.09039e-151
NC_017515.1\|WP_002227769.1\|2230138_2231242_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_017515.1\|WP_014581601.1\|2215552_2216896_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0

>NC_017515.1|WP_002223219.1|2222524_2226694_+|translocation/assembly-module-TamB
MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLERFETGKISVGKTFDKQTVYLERLNAAYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPANGQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQHRIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAGAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLNDGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSDKKDSAGNSKGK
>NC_017515.1|WP_002235300.1|2220622_2222470_+|outer-membrane-protein-assembly-factor
MHDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEASDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKAYPLAKLGNTRAAVNPDTATADLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGAFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNANVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NC_017515.1|WP_002221731.1|2218863_2220093_-|serine/threonine-transporter-SstT
MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIILYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NC_017515.1|WP_014581602.1|2217468_2218752_-|transferrin-binding-protein-like-solute-binding-protein
MFERSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAAPVVAEKETEVKEDAPQAGSQGQGAPSTQGSQDMAAVSAENTGNGGAATTDKPKNEDEGPQNDMLQNSAESANQTGNNQPADSSDSAPASNPAPANGGSNFGRVDLANGVLIDGPSQNITLTHCKGDSCNGDNLLDEEAPSKSEFENLNESERIEKYKKDGKSDKFTNLVATAVQANGTNKYVIIYKDKSASSSFARFRRSARSRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NC_017515.1|WP_002223215.1|2217178_2217394_+|hypothetical-protein
MFKLGVYTCLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGLFVIILAALLVFGQYFSEKKMKDDGFIN
>NC_017515.1|WP_002221729.1|2216970_2217186_+|DUF4177-domain-containing-protein
MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVVTMEKDLRRMLLFFKREAYVVILERDRV
>NC_017515.1|WP_014581601.1|2215552_2216896_+|argininosuccinate-synthase
MSQNHTILQSLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAYTANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPWLDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVKPIMGVAFWDENVEVKPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSMEKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKK
>NC_017515.1|WP_014581600.1|2214439_2215240_-|competence/damage-inducible-protein-A
MNAFNLIIIGDEILHGSSQDKHFAFFKSLLESKGLKLNQVQYLPDEPDLLVRQLRRSFSDGMPTFVTGGIGATPDDHTRQAAAAALDLPVVRHPEAAKFIEGITQKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNTAGFSIREHYFFPGFPVMAHPMAEWVLETYYAGRFNQTERGSRSVYVFEQPESRITPLMEHIEQTYPGVRSYSLPSVGWTHSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN
>NC_017515.1|WP_014581599.1|2213413_2214400_-|S49-family-peptidase
MQYRIRRENEAPEAKNAGETLWERDIMREVLLSAYQDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGSRLKFQQYPDVFSGRVYTGADALKVGLVDGLGNIYSVAQDVVKAPDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR
>NC_017515.1|WP_002219993.1|2212082_2212457_+|hypothetical-protein
MIIQNEFNLYPSNMLPERFCYPEKYVRISNDTSLIPYIQPHNFHWWFENYGTEGAEVAYIFRNSILPDLNLIPFASNGEWEAYFDGNDVTGNPRVIVINLDNIENHEFFNSFEEWLELAIKDTW
>NC_017515.1|WP_002223221.1|2227788_2229246_+|MFS-transporter
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NC_017515.1|WP_002227769.1|2230138_2231242_-|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NC_017515.1|WP_002223223.1|2231344_2232238_-|patatin-like-phospholipase-family-protein
MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVGLALGGGASKGFAHIGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRRIQQFPIKFAAIATDFETGKAVAFNQGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISARPGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRLGEEAARAALPEIKRKLAAYRY
>NC_017515.1|WP_002218247.1|2232579_2233029_+|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD
>NC_017515.1|WP_002223224.1|2233102_2233411_+|hypothetical-protein
MNKNIAAALAGALSLSLAAGAVAADKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
>NC_017515.1|WP_002218249.1|2233527_2234370_+|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKECRRAA
>NC_017515.1|WP_002220005.1|2234359_2235106_+|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSA
>NC_017515.1|WP_002223225.1|2235127_2235715_+|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NC_017515.1|WP_002215152.1|2235720_2235900_+|zf-HC2-domain-containing-protein
MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NC_017515.1|WP_033908675.1|2236140_2236581_+|hypothetical-protein
MIKETLMRPIFLSFVLFPILITACSTPDKSARWENIGTISNGNIHTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFDTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017515_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017515_10

2233282-2233387

Orphan

Consensus_repeat	Method
CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017515_10

>merge|NC_017515|10|2233282-2233387|CRISPRCasFinder
CGAAGGCAAATGCGGCGAGGGCAAATGCGGTGCGACCGTAAAAAAAACCCACAAACACACCAAAGCATCTAAAGCCAAGGCCAAATCTGCCGAAGGCAAATGCGGC

>NC_017515|10|10|2233282-2233387|CRISPRCasFinder
CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	GCGACCGTAAAAAAAACCCACAAACACACCAAAGCATCTAAAGC
CAAGGCCAAATCTGCCGAAGGCAAATGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017515.1\|WP_002223215.1\|2217178_2217394_+\|hypothetical-protein	unknown	unknown	unknown
NC_017515.1\|WP_002223219.1\|2222524_2226694_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NC_017515.1\|WP_002221729.1\|2216970_2217186_+\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NC_017515.1\|WP_002235309.1\|2241001_2241613_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_017515.1\|WP_002223223.1\|2231344_2232238_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NC_017515.1\|WP_002223225.1\|2235127_2235715_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564
NC_017515.1\|WP_002223221.1\|2227788_2229246_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NC_017515.1\|WP_002235300.1\|2220622_2222470_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_017515.1\|WP_002218247.1\|2232579_2233029_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_017515.1\|WP_002220005.1\|2234359_2235106_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NC_017515.1\|WP_002224204.1\|2239203_2240475_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NC_017515.1\|WP_014581602.1\|2217468_2218752_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NC_017515.1\|WP_002215152.1\|2235720_2235900_+\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NC_017515.1\|WP_014581603.1\|2240632_2240950_+\|DUF4298-domain-containing-protein	unknown	unknown	gnl\|CDD\|372919
NC_017515.1\|WP_002227769.1\|2230138_2231242_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_017515.1\|WP_002221731.1\|2218863_2220093_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NC_017515.1\|WP_002218249.1\|2233527_2234370_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NC_017515.1\|WP_002220011.1\|2238567_2239170_-\|L-threonylcarbamoyladenylate-synthase	unknown	unknown	gnl\|CDD\|223088
NC_017515.1\|WP_002217985.1\|2237054_2238020_+\|IS30-like-element-IS1655-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_017515.1\|WP_033908675.1\|2236140_2236581_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017515.1\|WP_002223219.1\|2222524_2226694_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017515.1\|WP_002221729.1\|2216970_2217186_+\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	7.07695e-09
NC_017515.1\|WP_002235309.1\|2241001_2241613_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	1.17387e-63
NC_017515.1\|WP_002223223.1\|2231344_2232238_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	7.32936e-63
NC_017515.1\|WP_002223225.1\|2235127_2235715_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	1.88454e-125
NC_017515.1\|WP_002223221.1\|2227788_2229246_+\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017515.1\|WP_002235300.1\|2220622_2222470_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	4.01698e-173
NC_017515.1\|WP_002218247.1\|2232579_2233029_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.78246e-27
NC_017515.1\|WP_002220005.1\|2234359_2235106_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	5.3181e-115
NC_017515.1\|WP_014581602.1\|2217468_2218752_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	2.66773e-16
NC_017515.1\|WP_002215152.1\|2235720_2235900_+\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000444788
NC_017515.1\|WP_014581603.1\|2240632_2240950_+\|DUF4298-domain-containing-protein	gnl\|CDD\|372919	pfam14131, DUF4298, Domain of unknown function (DUF4298). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 94 and 105 amino acids in length. There are two completely conserved residues (Y and D) that may be functionally important.	2.3593e-23
NC_017515.1\|WP_002227769.1\|2230138_2231242_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_017515.1\|WP_002221731.1\|2218863_2220093_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NC_017515.1\|WP_002218249.1\|2233527_2234370_+\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	6.09039e-151
NC_017515.1\|WP_002220011.1\|2238567_2239170_-\|L-threonylcarbamoyladenylate-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.68071e-60
NC_017515.1\|WP_002217985.1\|2237054_2238020_+\|IS30-like-element-IS1655-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.79064e-136
NC_017515.1\|WP_002224204.1\|2239203_2240475_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0

>NC_017515.1|WP_002218247.1|2232579_2233029_+|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD
>NC_017515.1|WP_002223223.1|2231344_2232238_-|patatin-like-phospholipase-family-protein
MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVGLALGGGASKGFAHIGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRRIQQFPIKFAAIATDFETGKAVAFNQGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISARPGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRLGEEAARAALPEIKRKLAAYRY
>NC_017515.1|WP_002227769.1|2230138_2231242_-|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NC_017515.1|WP_002223221.1|2227788_2229246_+|MFS-transporter
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NC_017515.1|WP_002223219.1|2222524_2226694_+|translocation/assembly-module-TamB
MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLERFETGKISVGKTFDKQTVYLERLNAAYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPANGQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQHRIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAGAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLNDGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSDKKDSAGNSKGK
>NC_017515.1|WP_002235300.1|2220622_2222470_+|outer-membrane-protein-assembly-factor
MHDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEASDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKAYPLAKLGNTRAAVNPDTATADLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGAFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNANVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NC_017515.1|WP_002221731.1|2218863_2220093_-|serine/threonine-transporter-SstT
MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIILYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NC_017515.1|WP_014581602.1|2217468_2218752_-|transferrin-binding-protein-like-solute-binding-protein
MFERSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAAPVVAEKETEVKEDAPQAGSQGQGAPSTQGSQDMAAVSAENTGNGGAATTDKPKNEDEGPQNDMLQNSAESANQTGNNQPADSSDSAPASNPAPANGGSNFGRVDLANGVLIDGPSQNITLTHCKGDSCNGDNLLDEEAPSKSEFENLNESERIEKYKKDGKSDKFTNLVATAVQANGTNKYVIIYKDKSASSSFARFRRSARSRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NC_017515.1|WP_002223215.1|2217178_2217394_+|hypothetical-protein
MFKLGVYTCLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGLFVIILAALLVFGQYFSEKKMKDDGFIN
>NC_017515.1|WP_002221729.1|2216970_2217186_+|DUF4177-domain-containing-protein
MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVVTMEKDLRRMLLFFKREAYVVILERDRV
>NC_017515.1|WP_002218249.1|2233527_2234370_+|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKECRRAA
>NC_017515.1|WP_002220005.1|2234359_2235106_+|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSA
>NC_017515.1|WP_002223225.1|2235127_2235715_+|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NC_017515.1|WP_002215152.1|2235720_2235900_+|zf-HC2-domain-containing-protein
MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NC_017515.1|WP_033908675.1|2236140_2236581_+|hypothetical-protein
MIKETLMRPIFLSFVLFPILITACSTPDKSARWENIGTISNGNIHTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFDTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL
>NC_017515.1|WP_002217985.1|2237054_2238020_+|IS30-like-element-IS1655-family-transposase
MSYTQLTQGERYHIQYLSRHCTVTEIAKQLNRHKSTISREIRRHRTQGQQYSAEKAQRQSQTIKQRKRQPYKLDSQLIQHIDTLIRRKLSPEQVCAYLCKHHQITLHHSTIYRYLRQDKSNGSTLWQHLRICSKPYRKRYGSTWTRGKVPNRVGIENRPAIVDQKSRIGDWEADTIVGKGQKSALLTLVERVTRYTIICKLDSLKAEDTARAAVRALKAHKDRVHTITMDNGKEFYQHTKITKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPKQTDFRNISDREIRRVQDELNHRPRKTLGYETPSVLFLNLFQPLIH
>NC_017515.1|WP_002220011.1|2238567_2239170_-|L-threonylcarbamoyladenylate-synthase
MTDMLQTAFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR
>NC_017515.1|WP_002224204.1|2239203_2240475_-|phosphoribosylamine--glycine-ligase
MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQNIDLTAHQDLIEFCRKENIVFTVVGPEAPLAAGVVDDFRAAGLKIFGPTQYAAQLESSKDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLDEAHAAIDDMLLDNKMGNAGARVVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLDGDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQSGAPYTIEFNCRFGDPETQPIMSRLNSDLADLVEAAIDGKLDSVAAEWNPQTAVGVVLAAQNYPETPKKGDVISGLDAANQVGKVFHAGTTANEKGDVLTNGGRVLCVVGLGDNVAQAKAKAYGALEKISFDGMQYRKDIADKAINR
>NC_017515.1|WP_014581603.1|2240632_2240950_+|DUF4298-domain-containing-protein
MQKRIDEIQSKYREWCHLLPQLEEDIRRWKYVVTLIRDMDNFYTHEYQACHQAIEDGVELDLSTEGEYSIMSEDALWNALGEFHQLAWLYLRSSIDALDKYTQED
>NC_017515.1|WP_002235309.1|2241001_2241613_-|YigZ-family-protein
MITTYKTITSSTQAEFKDKGSRFIAFAYPIRTLADVKKYLDPLKEEHHKARHWCYAYRLGVDGMQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYFGGTLLGVPGLIHAYKEATAQALAVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQADILERDLQLDCRLTVSLSLVNYEACVAAWKNTRQIEVNTEKPFE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	2008708-2008737	0	1.0
NC_017515_5	5.1\|1928440\|48\|NC_017515\|CRISPRCasFinder	1928440-1928487	48	NC_017515.1	202575-202622	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	15992-16030	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	484257-484295	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	718934-718972	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	719674-719712	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	719926-719964	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	720149-720187	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	720245-720283	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	720843-720881	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	773567-773605	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	1578658-1578696	0	1.0
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	1578940-1578978	0	1.0
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	1387996-1388021	0	1.0
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	1388749-1388774	0	1.0
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	1561805-1561830	0	1.0
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	16881-16910	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	55632-55661	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	413937-413966	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	466647-466676	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	638325-638354	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	762612-762641	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	856948-856977	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	857441-857470	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	1351094-1351123	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	1561178-1561207	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	1561567-1561596	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	1561848-1561877	1	0.967
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	2144021-2144050	1	0.967
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	55256-55294	1	0.974
NC_017515_7	7.1\|2009373\|39\|NC_017515\|CRISPRCasFinder	2009373-2009411	39	NC_017515.1	1932744-1932782	1	0.974
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	856905-856930	1	0.962
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	1561135-1561160	1	0.962
NC_017515_8	8.1\|2046355\|26\|NC_017515\|CRISPRCasFinder	2046355-2046380	26	NC_017515.1	2137952-2137977	1	0.962
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	481928-481957	2	0.933
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	484048-484077	2	0.933
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017515.1	1218416-1218445	2	0.933

1. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 2008708-2008737, mismatch: 0, identity: 1.0

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgtttttggttttctgt	Protospacer
******************************

2. spacer 5.1|1928440|48|NC_017515|CRISPRCasFinder matches to position: 202575-202622, mismatch: 0, identity: 1.0

cggcttgttcggtttcggttttttttgaggtttcgggcaacttctaaa	CRISPR spacer
cggcttgttcggtttcggttttttttgaggtttcgggcaacttctaaa	Protospacer
************************************************

3. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 15992-16030, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

4. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 484257-484295, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

5. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 718934-718972, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

6. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 719674-719712, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

7. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 719926-719964, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

8. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 720149-720187, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

9. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 720245-720283, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

10. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 720843-720881, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

11. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 773567-773605, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

12. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 1578658-1578696, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

13. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 1578940-1578978, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

14. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 1387996-1388021, mismatch: 0, identity: 1.0

gacgcagggttaagaaaacctacatc	CRISPR spacer
gacgcagggttaagaaaacctacatc	Protospacer
**************************

15. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 1388749-1388774, mismatch: 0, identity: 1.0

gacgcagggttaagaaaacctacatc	CRISPR spacer
gacgcagggttaagaaaacctacatc	Protospacer
**************************

16. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 1561805-1561830, mismatch: 0, identity: 1.0

gacgcagggttaagaaaacctacatc	CRISPR spacer
gacgcagggttaagaaaacctacatc	Protospacer
**************************

17. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 16881-16910, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

18. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 55632-55661, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

19. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 413937-413966, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

20. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 466647-466676, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

21. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 638325-638354, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

22. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 762612-762641, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

23. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 856948-856977, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

24. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 857441-857470, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

25. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 1351094-1351123, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

26. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 1561178-1561207, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

27. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 1561567-1561596, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

28. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 1561848-1561877, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

29. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 2144021-2144050, mismatch: 1, identity: 0.967

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgattttggttttctgt	Protospacer
*************** **************

30. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 55256-55294, mismatch: 1, identity: 0.974

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagtgaaaccg	Protospacer
*******************************.*******

31. spacer 7.1|2009373|39|NC_017515|CRISPRCasFinder matches to position: 1932744-1932782, mismatch: 1, identity: 0.974

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagtgaaaccg	Protospacer
*******************************.*******

32. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 856905-856930, mismatch: 1, identity: 0.962

gacgcagggttaagaaaacctacatc	CRISPR spacer
gacgcagggttaagaaaacctgcatc	Protospacer
*********************.****

33. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 1561135-1561160, mismatch: 1, identity: 0.962

gacgcagggttaagaaaacctacatc	CRISPR spacer
gactcagggttaagaaaacctacatc	Protospacer
*** **********************

34. spacer 8.1|2046355|26|NC_017515|CRISPRCasFinder matches to position: 2137952-2137977, mismatch: 1, identity: 0.962

gacgcagggttaagaaaacctacatc	CRISPR spacer
gactcagggttaagaaaacctacatc	Protospacer
*** **********************

35. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 481928-481957, mismatch: 2, identity: 0.933

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gatttgaggtttctgtttttgattttctgt	Protospacer
***** ***************.********

36. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 484048-484077, mismatch: 2, identity: 0.933

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gatttgaggtttctgtttttgattttctgt	Protospacer
***** ***************.********

37. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to position: 1218416-1218445, mismatch: 2, identity: 0.933

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgatttcggttttctgt	Protospacer
*************** ***.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_015861	Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence	3662-3691	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_LT599053	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence	40033-40062	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017483	Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence	41656-41685	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_019308	Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence	25304-25333	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP016848	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence	4037-4066	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	198963-198992	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	AP013860	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C287, * SEQUENCING IN PROGRESS *	2479-2508	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	AP014470	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, * SEQUENCING IN PROGRESS *, 7 ordered pieces	10590-10619	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	AP013861	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, * SEQUENCING IN PROGRESS *	2603-2632	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	AP014471	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, * SEQUENCING IN PROGRESS *, 8 ordered pieces	21754-21783	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	JX519265	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence	28471-28500	6	0.8
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_003101	Lactococcus lactis CRL1127 plasmid pCRL1127, complete sequence	3472-3501	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP020605	Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd1, complete sequence	5159-5188	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP043528	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_04, complete sequence	1513-1542	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP023303	Lactobacillus plantarum strain pc-26 plasmid p.pc-2602, complete sequence	17161-17190	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP027195	Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence	32808-32837	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	CP034586	Lactococcus lactis subsp. lactis strain 184 plasmid p184F, complete sequence	7957-7986	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_017489	Lactococcus lactis subsp. lactis plasmid pIL2, complete sequence	5471-5500	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP028276	Lactobacillus plantarum strain SRCM100995 plasmid unnamed1, complete sequence	4768-4797	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP028227	Lactobacillus plantarum strain SRCM101187 plasmid unnamed1, complete sequence	28033-28062	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	LN846933	Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome	4742-4771	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP025691	Lactobacillus plantarum strain IRG1 plasmid pIRG101, complete sequence	7476-7505	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP024060	Lactobacillus plantarum strain KACC 92189 plasmid unnamed2	26269-26298	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	416538-416567	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_028998	Phormidium phage MIS-PhV1B, complete genome	41137-41166	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_028998	Phormidium phage MIS-PhV1B, complete genome	41214-41243	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	KY065490	Streptococcus phage IPP52, complete genome	5271-5300	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	KT337348	Streptococcus phage phiARI0378, partial genome	32243-32272	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	KT337358	Streptococcus phage phiARI0468-4, complete genome	30650-30679	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NC_031907	Streptococcus phage phiARI0746, complete genome	26469-26498	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	KT337347	Streptococcus phage phiARI0285-3, partial genome	34241-34270	7	0.767
NC_017515_1	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	NZ_AP014867	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK3, complete sequence	75195-75224	8	0.733

1. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_015861 (Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ctttttaggtttctttttttgtttttcttc	Protospacer
  ************ ****** ****** .

2. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_LT599053 (Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ctttttaggtttctttttttgtttttcttc	Protospacer
  ************ ****** ****** .

3. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_017483 (Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ttttttaggtttctttttttgtttttcttc	Protospacer
  ************ ****** ****** .

4. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_019308 (Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ttttttaggtttctttttttgtttttcttc	Protospacer
  ************ ****** ****** .

5. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP016848 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ttttttaggtttctttttttgtttttcttc	Protospacer
  ************ ****** ****** .

6. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aattttaggtttctgtttcttgtttctttt	Protospacer
.*****************.* ****..* *

7. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to AP013860 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C287, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttt-tctgt	CRISPR spacer
cttttttagtttctgtttttggtttagctg-	Protospacer
  **** .*****************  ***

8. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to AP014470 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttt-tctgt	CRISPR spacer
cttttttagtttctgtttttggtttagctg-	Protospacer
  **** .*****************  ***

9. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to AP013861 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttt-tctgt	CRISPR spacer
cttttttagtttctgtttttggtttagctg-	Protospacer
  **** .*****************  ***

10. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to AP014471 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttt-tctgt	CRISPR spacer
cttttttagtttctgtttttggtttagctg-	Protospacer
  **** .*****************  ***

11. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to JX519265 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence) position: , mismatch: 6, identity: 0.8

gattttaggtttctgtttttggttt-tctgt	CRISPR spacer
cttttttagtttctgtttttggtttagctg-	Protospacer
  **** .*****************  ***

12. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_003101 (Lactococcus lactis CRL1127 plasmid pCRL1127, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

13. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP020605 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd1, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

14. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP043528 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_04, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

15. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP023303 (Lactobacillus plantarum strain pc-26 plasmid p.pc-2602, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

16. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP027195 (Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

17. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to CP034586 (Lactococcus lactis subsp. lactis strain 184 plasmid p184F, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

18. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_017489 (Lactococcus lactis subsp. lactis plasmid pIL2, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

19. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP028276 (Lactobacillus plantarum strain SRCM100995 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

20. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP028227 (Lactobacillus plantarum strain SRCM101187 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

21. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to LN846933 (Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ttttttaggtttctttttttgttttttttc	Protospacer
  ************ ****** ****.* .

22. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP025691 (Lactobacillus plantarum strain IRG1 plasmid pIRG101, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

23. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP024060 (Lactobacillus plantarum strain KACC 92189 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
tcttttagggttttgtttttggtttttgtt	Protospacer
  ******* **.*************.  *

24. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ctgttcctgtttctgtttttggttatctgt	Protospacer
   **.  **************** *****

25. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_028998 (Phormidium phage MIS-PhV1B, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
cgttttatgtttctgtttttgtttttggtt	Protospacer
 .***** ************* ****   *

26. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_028998 (Phormidium phage MIS-PhV1B, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
cgttttatgtttctgtttttgtttttggtt	Protospacer
 .***** ************* ****   *

27. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to KY065490 (Streptococcus phage IPP52, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aagattagatttctgtttttggctttcgtt	Protospacer
.*  ****.*************.****  *

28. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to KT337348 (Streptococcus phage phiARI0378, partial genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aagattagatttctgtttttggctttcgtt	Protospacer
.*  ****.*************.****  *

29. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to KT337358 (Streptococcus phage phiARI0468-4, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aagattagatttctgtttttggctttcgtt	Protospacer
.*  ****.*************.****  *

30. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_031907 (Streptococcus phage phiARI0746, complete genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aagattagatttctgtttttggctttcgtt	Protospacer
.*  ****.*************.****  *

31. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to KT337347 (Streptococcus phage phiARI0285-3, partial genome) position: , mismatch: 7, identity: 0.767

gattttaggtttctgtttttggttttctgt	CRISPR spacer
aagattagatttctgtttttggctttcgtt	Protospacer
.*  ****.*************.****  *

32. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NZ_AP014867 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK3, complete sequence) position: , mismatch: 8, identity: 0.733

gattttaggtttctgtttttggttttctgt	CRISPR spacer
ggttttaggtttctgtttttagtaacttaa	Protospacer
*.******************.**  ..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

91612 : 97334

Enterobacteria_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002255611.1\|91612_92632_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.3e-81	45.5
WP_002224748.1\|92747_93815_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.8e-102	54.1
WP_002224747.1\|93877_94744_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.5e-106	64.9
WP_002221026.1\|94864_95830_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	4.7e-37	35.5
WP_193363959.1\|95839_96660_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-16	37.6
WP_050584726.1\|96779_97334_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.5e-51	53.1

DBSCAN-SWA_2

1012187 : 1021411

Burkholderia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222380.1\|1012187_1014467_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.2e-309	67.6
WP_002222381.1\|1014524_1015538_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	8.0e-88	52.8
WP_002213380.1\|1015530_1016718_+	type II restriction enzyme	E5E3X4	Burkholderia_phage	6.6e-33	38.9
WP_002213381.1\|1016778_1017912_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	1.4e-165	75.1
WP_002217077.1\|1018156_1018447_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	7.5e-15	54.5
WP_002213385.1\|1018487_1018766_-	cell division protein FtsB	NA	NA	NA	NA
WP_002222383.1\|1018779_1020066_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-147	62.3
WP_002222384.1\|1020113_1020554_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_002222386.1\|1020568_1021411_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	5.7e-47	41.6

DBSCAN-SWA_3

1141712 : 1182503

Mannheimia_phage(33.33%)

terminase,transposase,tRNA,plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002244132.1\|1141712_1143023_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_002222471.1\|1143090_1144050_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_002217207.1\|1144261_1144663_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002222472.1\|1144730_1144928_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_002225220.1\|1145140_1145695_+	amino acid permease	NA	NA	NA	NA
WP_002222474.1\|1146117_1146459_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_014581446.1\|1146513_1147266_-	DUF2314 domain-containing protein	NA	NA	NA	NA
WP_014581447.1\|1147301_1147958_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_002222477.1\|1148034_1149897_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	2.4e-106	41.1
WP_002222478.1\|1150067_1150940_+	presqualene diphosphate synthase HpnD	NA	NA	NA	NA
WP_041917657.1\|1151337_1152651_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014581449.1\|1152734_1153454_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002217215.1\|1153618_1154290_+	CsgG/HfaB family protein	NA	NA	NA	NA
WP_002234874.1\|1154299_1154668_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_002217218.1\|1154664_1155312_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_002222486.1\|1155600_1156842_+	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_002222487.1\|1156951_1157161_-	hypothetical protein	A0A0R6PHB4	Moraxella_phage	3.1e-07	48.2
WP_002221017.1\|1157157_1157454_-	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	1.8e-24	61.4
WP_002223791.1\|1157432_1158038_-	hypothetical protein	Q7Y5S1	Haemophilus_phage	7.0e-15	37.5
WP_002217222.1\|1158117_1158405_+	BrnT family toxin	NA	NA	NA	NA
WP_002213586.1\|1158376_1158679_+	BrnA antitoxin family protein	A0A2H4J5Y5	uncultured_Caudovirales_phage	1.1e-05	38.8
WP_002225231.1\|1159729_1161703_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	4.0e-136	56.9
WP_002222498.1\|1161713_1162274_-	YmfQ family protein	A0A0M3LQE1	Mannheimia_phage	3.1e-25	39.2
WP_002244125.1\|1162270_1162882_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	2.6e-57	56.9
WP_002244124.1\|1162881_1163325_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	3.1e-36	55.3
WP_002217228.1\|1163338_1163686_-	phage GP46 family protein	A0A0M3LQK5	Mannheimia_phage	9.5e-33	61.2
WP_002217230.1\|1163786_1164455_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.8e-59	52.1
WP_002222500.1\|1164451_1165597_-	hypothetical protein	F6MIL3	Haemophilus_phage	3.0e-115	57.9
WP_002227342.1\|1165586_1166918_-	DNA circularization protein	A0A0M3LQ21	Mannheimia_phage	2.1e-64	35.4
WP_014581450.1\|1166917_1169056_-	hypothetical protein	A0A0M3LPB6	Mannheimia_phage	1.2e-37	26.6
WP_002222503.1\|1169210_1169813_+	hypothetical protein	NA	NA	NA	NA
WP_014580554.1\|1169856_1170090_-	hypothetical protein	NA	NA	NA	NA
WP_002217234.1\|1170064_1170430_-	hypothetical protein	F6MIK9	Haemophilus_phage	5.3e-10	37.7
WP_002222505.1\|1170433_1170811_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	5.3e-29	50.8
WP_002227344.1\|1170875_1172285_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B7SDP8	Haemophilus_phage	9.6e-124	52.6
WP_002213602.1\|1172287_1172485_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_002213603.1\|1172481_1173132_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	6.8e-32	38.4
WP_002213604.1\|1173121_1173544_-	DUF1320 family protein	A0A2P9JZJ4	Alteromonadaceae_phage	2.2e-15	42.5
WP_002213605.1\|1173543_1173942_-	hypothetical protein	NA	NA	NA	NA
WP_014581451.1\|1174053_1175019_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	8.0e-37	35.5
WP_002232421.1\|1175106_1176168_-	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	9.6e-60	43.0
WP_002213608.1\|1176398_1176815_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	2.4e-30	48.2
WP_002222511.1\|1176924_1178220_-\|head	phage head morphogenesis protein	B7SDN5	Haemophilus_phage	8.3e-114	50.1
WP_002219310.1\|1178206_1179775_-	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	1.0e-187	61.4
WP_002222512.1\|1179774_1181397_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	3.2e-224	69.7
WP_002222513.1\|1181409_1182000_+	hypothetical protein	A0A127KNL4	Pseudomonas_phage	8.1e-08	36.3
WP_002227349.1\|1181996_1182503_-	DUF1804 family protein	I6PBD1	Pseudomonas_phage	1.5e-39	50.6

DBSCAN-SWA_4

1217052 : 1262087

Staphylococcus_phage(18.18%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581460.1\|1217052_1218075_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_002222545.1\|1218789_1219608_+	autotransporter adhesin Opc	NA	NA	NA	NA
WP_002219343.1\|1219772_1220417_+	DedA family protein	NA	NA	NA	NA
WP_002222546.1\|1220435_1222346_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.2e-56	30.2
WP_002221064.1\|1222467_1223433_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	8.0e-37	35.5
WP_002213466.1\|1223891_1224806_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002223742.1\|1225073_1226543_+	DUF3360 family protein	NA	NA	NA	NA
WP_002217120.1\|1226794_1227166_+	hypothetical protein	NA	NA	NA	NA
WP_002244109.1\|1227238_1228648_+	threonine synthase	NA	NA	NA	NA
WP_002225274.1\|1228693_1229488_+	hypothetical protein	NA	NA	NA	NA
WP_002213456.1\|1229675_1230452_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_002244108.1\|1230704_1230848_-	hypothetical protein	NA	NA	NA	NA
WP_014581461.1\|1231523_1233995_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-74	30.3
WP_002240539.1\|1233991_1235170_-	GTPase HflX	NA	NA	NA	NA
WP_002240540.1\|1235174_1236455_-	CAP domain-containing protein	NA	NA	NA	NA
WP_002222552.1\|1236607_1237333_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_002222553.1\|1237405_1238083_-	DNA repair protein RadC	NA	NA	NA	NA
WP_002213445.1\|1238205_1239555_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_002222555.1\|1239814_1241224_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002213442.1\|1241320_1241575_+	hypothetical protein	NA	NA	NA	NA
WP_002222556.1\|1241636_1242278_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002240544.1\|1242452_1242713_+	DNA (cytosine-5-)-methyltransferase	A0A193GZ36	Escherichia_phage	2.4e-12	48.2
WP_009347246.1\|1242758_1243274_+	DNA (cytosine-5-)-methyltransferase	G9E546	Ostreococcus_lucimarinus_virus	5.0e-22	37.1
WP_002244107.1\|1243288_1243723_+	DNA cytosine methyltransferase	G9E546	Ostreococcus_lucimarinus_virus	5.0e-23	43.8
WP_002213435.1\|1243738_1243900_+	NgoBV family restriction endonuclease	NA	NA	NA	NA
WP_193363962.1\|1244287_1244881_+	NgoBV family restriction endonuclease	NA	NA	NA	NA
WP_002222557.1\|1244914_1245985_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002222558.1\|1246147_1246711_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_002222559.1\|1247171_1248569_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_002222560.1\|1248640_1249516_-	DMT family transporter	NA	NA	NA	NA
WP_002217104.1\|1249517_1250240_-	DnaJ domain-containing protein	M1PC06	Moumouvirus	5.4e-14	62.1
WP_002217103.1\|1250262_1250742_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_002222561.1\|1250816_1251179_+	RidA family protein	NA	NA	NA	NA
WP_002222562.1\|1251213_1252077_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_002222563.1\|1252169_1253129_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.2e-112	78.6
WP_002223889.1\|1253268_1254234_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	1.8e-36	35.5
WP_002222564.1\|1254353_1255829_+	anthranilate synthase component I	NA	NA	NA	NA
WP_002222565.1\|1255825_1256371_+	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_002222566.1\|1256367_1257504_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002213671.1\|1257550_1258033_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002222568.1\|1259190_1259484_+	hypothetical protein	NA	NA	NA	NA
WP_002221065.1\|1259918_1260524_+	Smr/MutS family protein	NA	NA	NA	NA
WP_079274829.1\|1261266_1261368_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_079274828.1\|1261374_1261485_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.8e-07	65.7
WP_002260534.1\|1261508_1262087_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.4e-50	50.6

DBSCAN-SWA_5

1415062 : 1469100

Pseudomonas_phage(13.33%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002220644.1\|1415062_1416358_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_002220643.1\|1416358_1416988_+	YfgM family protein	NA	NA	NA	NA
WP_002217520.1\|1417137_1418595_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_002217521.1\|1418625_1419525_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	1.5e-45	35.5
WP_002222687.1\|1419586_1420003_+	hypothetical protein	NA	NA	NA	NA
WP_002222688.1\|1420068_1420635_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.1e-74	71.1
WP_002222689.1\|1420698_1421403_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_025458644.1\|1421546_1422743_+	glycosyltransferase	NA	NA	NA	NA
WP_014581493.1\|1422781_1423735_+	PhoH family protein	H6X2N1	Pseudomonas_phage	7.1e-46	47.8
WP_041917667.1\|1423839_1424163_-	periplasmic protein	NA	NA	NA	NA
WP_014581494.1\|1424335_1425697_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.2e-24	37.7
WP_014581495.1\|1426128_1427829_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.4e-70	31.6
WP_002217527.1\|1427897_1428611_-	hypothetical protein	NA	NA	NA	NA
WP_162467413.1\|1428657_1429170_-	ribosome-associated protein	NA	NA	NA	NA
WP_002217529.1\|1429316_1430648_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_002217533.1\|1430944_1431148_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.4e-22	78.8
WP_002221161.1\|1431390_1431693_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_002236494.1\|1431694_1433986_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.6
WP_014581497.1\|1434024_1437123_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_025458840.1\|1437244_1437430_-	hypothetical protein	NA	NA	NA	NA
WP_033909723.1\|1437657_1438272_-	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	1.1e-34	48.1
WP_021437362.1\|1438957_1439050_-	hypothetical protein	NA	NA	NA	NA
WP_002227457.1\|1439166_1440708_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.5e-101	42.4
WP_002227458.1\|1440784_1441789_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.9e-25	33.0
WP_002225406.1\|1441917_1442949_-	HNH endonuclease	NA	NA	NA	NA
WP_002219492.1\|1442950_1444186_-	DNA (cytosine-5-)-methyltransferase	Q6DMX0	Streptococcus_phage	2.9e-47	31.2
WP_002217546.1\|1444222_1445194_-	ADP-heptose synthase	M4QF80	Synechococcus_phage	6.6e-15	29.6
WP_002217549.1\|1445248_1445989_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_002222696.1\|1446514_1447162_-	adenylate kinase	NA	NA	NA	NA
WP_002219495.1\|1447377_1448217_+\|protease	protease HtpX	NA	NA	NA	NA
WP_002213938.1\|1448517_1449078_-	hypothetical protein	NA	NA	NA	NA
WP_002213939.1\|1449191_1449584_-	DUF723 domain-containing protein	NA	NA	NA	NA
WP_002232189.1\|1449791_1450184_-	DUF723 domain-containing protein	NA	NA	NA	NA
WP_002217553.1\|1450300_1450711_-	DUF723 domain-containing protein	NA	NA	NA	NA
WP_002219498.1\|1450724_1451162_-	DUF723 domain-containing protein	NA	NA	NA	NA
WP_002222698.1\|1451572_1452871_-	adenylosuccinate synthase	A0A291AUF9	Pandoravirus	1.4e-57	30.9
WP_002227461.1\|1452974_1454126_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_002227462.1\|1454460_1455840_+	multidrug efflux MATE transporter NorM	NA	NA	NA	NA
WP_002227463.1\|1455914_1456955_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_014581498.1\|1456966_1457617_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002225414.1\|1457671_1458469_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002217565.1\|1458519_1459086_+	SCP2 domain-containing protein	NA	NA	NA	NA
WP_002213954.1\|1459105_1459996_+	NAD(+) kinase	NA	NA	NA	NA
WP_002225415.1\|1460020_1460779_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_002248700.1\|1460810_1461776_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.0e-36	35.1
WP_014581499.1\|1461916_1462582_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_014581500.1\|1462697_1463471_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_014581501.1\|1463649_1464807_+	PLP-dependent transferase	NA	NA	NA	NA
WP_014581502.1\|1464870_1465872_-	porphobilinogen synthase	NA	NA	NA	NA
WP_002217573.1\|1466054_1466339_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_002213963.1\|1466448_1467069_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_002213965.1\|1467132_1469100_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	6.5e-110	42.4

DBSCAN-SWA_6

1799326 : 1858474

Moraxella_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219741.1\|1799326_1800277_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_002224035.1\|1800421_1800610_+	hemagglutinin repeat-containing protein	NA	NA	NA	NA
WP_002222952.1\|1800662_1801043_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.7e-22	60.5
WP_002219746.1\|1802425_1802863_+	virulence-associated protein VapD	NA	NA	NA	NA
WP_025458572.1\|1804396_1804759_-\|transposase	transposase	NA	NA	NA	NA
WP_002222955.1\|1805179_1806544_+	Fic family protein	A0A1V0E025	Clostridioides_phage	2.2e-24	29.7
WP_002222956.1\|1806904_1807411_+	hypothetical protein	NA	NA	NA	NA
WP_002227069.1\|1807537_1808827_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_014581537.1\|1809151_1810939_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_096001759.1\|1811076_1811828_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.2e-16	37.6
WP_014581538.1\|1811895_1812297_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_002225624.1\|1812462_1812777_-	hypothetical protein	NA	NA	NA	NA
WP_002233812.1\|1812788_1813097_-	hypothetical protein	NA	NA	NA	NA
WP_002225626.1\|1813068_1814082_-	hypothetical protein	NA	NA	NA	NA
WP_002224040.1\|1814150_1814567_-	hypothetical protein	NA	NA	NA	NA
WP_002217985.1\|1822692_1823658_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	4.7e-37	35.5
WP_002232967.1\|1823721_1824210_-	hypothetical protein	NA	NA	NA	NA
WP_072104363.1\|1824206_1824392_-	hypothetical protein	NA	NA	NA	NA
WP_002246836.1\|1824994_1825930_-	immunity 49 family protein	NA	NA	NA	NA
WP_014581539.1\|1825932_1828467_-	S-layer family protein	A0A0R6PJK4	Moraxella_phage	4.5e-39	35.9
WP_002214443.1\|1828825_1829200_-	DUF596 domain-containing protein	NA	NA	NA	NA
WP_014581540.1\|1829218_1831300_-	DUF637 domain-containing protein	A0A0R6PJK4	Moraxella_phage	3.9e-12	36.4
WP_002219760.1\|1831368_1831878_-	hypothetical protein	NA	NA	NA	NA
WP_014581541.1\|1831884_1837812_-	two-partner secretion exoprotein HrpA	A0A0R6PJK4	Moraxella_phage	3.1e-75	26.3
WP_014581542.1\|1837921_1839664_-	two-partner secretion system transporter HrpB	A0A0R6PI85	Moraxella_phage	1.4e-31	27.5
WP_002236088.1\|1839724_1839964_-	ATP-binding protein	NA	NA	NA	NA
WP_002221436.1\|1840247_1840550_-	hypothetical protein	NA	NA	NA	NA
WP_162467417.1\|1840915_1841071_-	hypothetical protein	NA	NA	NA	NA
WP_002222933.1\|1841703_1842063_-	hypothetical protein	NA	NA	NA	NA
WP_002222936.1\|1843882_1844164_+	hypothetical protein	NA	NA	NA	NA
WP_002222937.1\|1844160_1845204_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_014581543.1\|1846266_1848309_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_002214461.1\|1848394_1848838_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_002221441.1\|1848858_1849116_-	glutaredoxin 3	A0A1X7BZ88	Faustovirus	9.6e-06	32.4
WP_002214463.1\|1849328_1850822_+	ribonuclease G	NA	NA	NA	NA
WP_002222939.1\|1850855_1852106_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_002222940.1\|1852499_1853813_-	CitMHS family transporter	NA	NA	NA	NA
WP_002222966.1\|1854382_1854949_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002222967.1\|1855113_1856523_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_002227613.1\|1857466_1858474_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017515.1|WP_002217120.1|1226794_1227166_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_017515.1|WP_002213678.1|1262091_1262502_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_017515.1|WP_002213679.1|1262498_1262831_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017515.1|WP_002217120.1|1226794_1227166_+|hypothetical-protein

1226794_1227166_+

123 aa aa

1217052-1262087

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017515_1	Orphan	1.1\|55855\|30\|NC_017515\|CRISPRCasFinder	55855-55884	30	1218445-1218416	2

1. spacer 1.1|55855|30|NC_017515|CRISPRCasFinder matches to NC_017515 position: 1218445-1218416, mismatch: 2

gattttaggtttctgtttttggttttctgt	CRISPR spacer
gattttaggtttctgatttcggttttctgt	Protospacer
*************** ***.**********

NC_017515.1|WP_002213678.1|1262091_1262502_-|hypothetical-protein

1262091_1262502_-

136 aa aa

NC_017515.1|WP_002213679.1|1262498_1262831_-|hypothetical-protein

1262498_1262831_-

110 aa aa

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017515

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information