CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015311	Prevotella denticola F0289, complete genome	9 crisprs	RT,PD-DExK,WYL,DEDDh,PrimPol,cas9,cas2,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas1,cas3	1	16	1	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_1

266686-266907

Orphan

Consensus_repeat	Method
AACCGCCCGCAGCAGGGAGGCTACCGGCCACGCTACAACAAC	PILER-CR

2 spacers

The CRISPR arrays of NC_015311_1

>merge|NC_015311|1|266686-266907|PILER-CR
AACCGCCCGCAGCAGGGAGGCTACCGGCCACGCCAGAACAGCTACGGAGGCTACAACAACCGCGGTGGCTATCAGAACCGCCCGCAGCAGGGGGGCTACCGGCCACGCTACAACAACAACGGTGACGAAGGCGGCTACCAGCCACGGCAGGGCGGATATAACAACCGCGGCGGCTATCAGAACCGCCCGCAGCAGGGAGGTTACCGTCCTCGTTACAACAAC

>NC_015311|1|1|266686-266907|PILER-CR
AACCGCCCGCAGCAGGGAGGCTACCGGCCACGCCAGAACAGC	TACGGAGGCTACAACAACCGCGGTGGCTATCAG
AACCGCCCGCAGCAGGGGGGCTACCGGCCACGCTACAACAAC	AACGGTGACGAAGGCGGCTACCAGCCACGGCAGGGCGGATATAACAACCGCGGCGGCTATCAG
AACCGCCCGCAGCAGGGAGGTTACCGTCCTCGTTACAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013670501.1\|257058_258093_-\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NC_015311.1\|WP_013670512.1\|272724_274149_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372650
NC_015311.1\|WP_004351317.1\|261970_262405_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NC_015311.1\|WP_013670500.1\|255047_256505_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NC_015311.1\|WP_013670499.1\|253704_255045_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NC_015311.1\|WP_013670503.1\|259402_260689_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NC_015311.1\|WP_004351333.1\|278109_279963_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_015311.1\|WP_004351338.1\|271165_272650_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NC_015311.1\|WP_013670510.1\|268190_269582_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NC_015311.1\|WP_081457131.1\|281549_283370_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_015311.1\|WP_013670514.1\|277810_278098_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670511.1\|270147_270636_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_015311.1\|WP_004351308.1\|258111_258930_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_015311.1\|WP_044112209.1\|262901_263144_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_036875887.1\|275668_277543_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372475
NC_015311.1\|WP_004351321.1\|274172_275615_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360
NC_015311.1\|WP_044112623.1\|263157_263613_+\|DUF2335-domain-containing-protein	unknown	unknown	gnl\|CDD\|370814
NC_015311.1\|WP_004351306.1\|280182_281331_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NC_015311.1\|WP_013670508.1\|264970_266317_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NC_015311.1\|WP_013670504.1\|260708_261656_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|107204

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013670501.1\|257058_258093_-\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	1.79825e-55
NC_015311.1\|WP_013670512.1\|272724_274149_+\|peptidylprolyl-isomerase	gnl\|CDD\|372650	pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	3.54947e-31
NC_015311.1\|WP_004351317.1\|261970_262405_-\|DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	6.78924e-26
NC_015311.1\|WP_013670500.1\|255047_256505_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	3.63207e-107
NC_015311.1\|WP_013670499.1\|253704_255045_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	2.96023e-174
NC_015311.1\|WP_013670503.1\|259402_260689_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NC_015311.1\|WP_004351333.1\|278109_279963_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	2.5958e-175
NC_015311.1\|WP_004351338.1\|271165_272650_+\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NC_015311.1\|WP_013670510.1\|268190_269582_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_015311.1\|WP_013670511.1\|270147_270636_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	3.49429e-49
NC_015311.1\|WP_004351308.1\|258111_258930_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.17674e-12
NC_015311.1\|WP_081457131.1\|281549_283370_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	1.99035e-162
NC_015311.1\|WP_036875887.1\|275668_277543_+\|hypothetical-protein	gnl\|CDD\|372475	pfam13100, OstA_2, OstA-like protein. This is a family of OstA-like proteins that are related to pfam03968.	1.47119e-40
NC_015311.1\|WP_004351321.1\|274172_275615_+\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	2.27927e-24
NC_015311.1\|WP_044112623.1\|263157_263613_+\|DUF2335-domain-containing-protein	gnl\|CDD\|370814	pfam10097, DUF2335, Predicted membrane protein (DUF2335). Members of this family of hypothetical bacterial proteins have no known function.	9.85739e-10
NC_015311.1\|WP_004351306.1\|280182_281331_+\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	4.37147e-21
NC_015311.1\|WP_013670508.1\|264970_266317_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NC_015311.1\|WP_013670504.1\|260708_261656_+\|cysteine-synthase-A	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	1.22402e-163

>NC_015311.1|WP_013670508.1|264970_266317_+|adenylosuccinate-lyase
MILDTLTAVSPIDGRYRNKTEHLADYFSEYALIRYRVRVEIEYFITLCELPLPQLESFDSTLFEPLRDIYRNFDEASAARIKEIEKTTNHDVKAVEYFLKEEFDRIGGLEAYKEFIHFGLTSQDINNTSVPLSVKEALEEVFYPQVEELIAQLKEYAGEWEDVPMLAKTHGQPASPTRLGKEIEVYVYRLSEQLASLRSCKLTAKFGGATGNFNAHHVAYPQYDWRAFGNRFVSKKLGLEREQWTTQISNYDHLGSVFDAIRRINTIIIDLDRDFWMYISMEYFKQKIKTGEVGSSAMPHKVNPIDYENSEGNLGIANAILQFLAQKLPVSRLQRDLTDSTVLRNVGVPLGHSIIAIQSTLKGLRKLILNEEKLSEDLDNTWAVVAEAIQTILRREAYPHPYEALKALTRTNKKMTAETIHAFIRTLNVSDNVKAELMAITPHNYTGI
>NC_015311.1|WP_044112623.1|263157_263613_+|DUF2335-domain-containing-protein
MATCNETLSEEITDVNKVLDTLDPEQRTIIVKAFMAMETERTFRGPLPAPEDFRAYGEVIPNAPERILSMTEQQVSHRIHTEEKIVKSGLAESRIGQWMGYSIVLILIGLSTLLASNGHDWVAGAMMTAAIGLSVIFVLRQKPSEKETEGA
>NC_015311.1|WP_044112209.1|262901_263144_+|hypothetical-protein
MKILRQTGNKRTSTSVLLSQRPTMKTGILSALGMTPRKRFVQYLHGNNMDDLQRDARVIAQDMDTVIKQLVNGRKRTKRD
>NC_015311.1|WP_004351317.1|261970_262405_-|DNA-binding-protein
MAVEIRLEQSKFKDKKGAGKWYARTVSTGVVTTEELADAIQENTSFSRGDVRGLVIALVDEISYRLREGETVALEGLGRFHLTVESEPVDNPEDFDIRRHVKNVKCRFVPTSTRNARTGKKNQTLAYGARVEWAEPEEDEEEED
>NC_015311.1|WP_013670504.1|260708_261656_+|cysteine-synthase-A
MAKIADRLTELIGNTPLLALRKFSAGKGLETPILAKIEYFNPGGSVKDRIALAMIEDAEAKGQLKPGATIIEPTSGNTGVGLALVAAVKGYRLILTMPETMSVERRNLVKAYGATVKLTSGKDGMKGAIKVAEELHSSIPGSVILQQFENQANPERHYRTTGPEIWRDTDGKVDVFVAGVGTGGTVSGIGRYLKEQNPAVKIVAVEPAASPVLSGGKSGPHKIQGIGAGFVPATYSKEYVDEAFQVENDQAILAGRQLAQQEGLLVGISSGAAAFAAAEIARRPENAGKTVVALLPDTGERYLSTVLYAFEEYPL
>NC_015311.1|WP_013670503.1|259402_260689_+|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MAKQKYHFETLQLHAGQEQADPATGSRAVPIYQTTSYVFNDCQHASDLFALKATGNIYGRLNNPTQTAFEERIAPLEGGVAGLAVASGAAAVTYAITNIAFAGDHVVASKTIYGGTYNLLAHTLSKYGISTTFFDPDNYEELESAIQENTRLVYIETLGNPNSNISDIERSADIAHRHGLPLLIDNTFGTPYLIRPIEHGADIVVHSATKFIGGHGTSLGGVIVDGGTFDWKADPGKFPGFNKPDASYHGLVFGDVPAPFATRVRTLLLRDQGAAISPFNAFLLLQGLETLSLRVERHVYNTRKVLEYLEKQPLVKKINHPAMASHPNHDLYERYFPNGAGSIFTIELDGDQQKAFDFIDHLKVFSLLANVADQKSLVIHPLSTTHSELSVEEAAGQGIYPNTVRLSIGTEHYEDIIADLDQAFEAVK
>NC_015311.1|WP_004351308.1|258111_258930_-|ATP-binding-protein
MQKYADYIEEIEIDSLWSGKKHIRWTLDRQVNILSGINGVGKSTILNKVVRSLSQGGEFPSHSLKGVRLKVCPDDARWIRYDIIRSFDRPLMDSDSISKINTNLVTELDWQLFQLQRKYLDYQVNIGNRIIETLQGGEADAAVKAQRISQPKKRFQDILDDLFTETGKKIVRSENEIRFSLMGETLAPYQLSSGEKQMLVILLTVLVEDNKDYVLFMDEPEVSLHIDWQKRLIDLILELNPNVQIILATHSPAVIMNGWIDRVTEVTDITDN
>NC_015311.1|WP_013670501.1|257058_258093_-|DUF4435-domain-containing-protein
MMGRRLSDNLSSAYIEAANRLNGKHARRKIIAYVEAYDDIFFWRTVLSGFENEDRYFEVMLPSRINLTKGKRSVLMNLVAQNMGENMIACVDADYDYLLQGTTPLSAEVNGNPYVFHTYAYAIENLQCYAPSLHDVTVAVALNDHAVFNFEEFLKQYSEIIHPLFVWSIWHYRHGLHRRFTISDFNRVVEVGSFSLRGATESLQRLRNKVQMRVRQLQRENPAAKESYLQLKDELRTLGVTPATTYLYIQGHHLFDNIVVPVLKRVCDRLIREREEEINRNAVHDTQRRNELSSYSHSTEAIVPMLRRNVGYVGSEPFRRLREDVDRFLEQAARQSDEEPVDNY
>NC_015311.1|WP_013670500.1|255047_256505_+|TrkH-family-potassium-uptake-protein
MLNLKLISKILGSLLWIEGLLLLNCLAVSLWYQSVDVMPFVWSILITVGTGFLFRLLGRNADNLLGRRDAYFVVTVAWILFTLFGTLPFMISGYIHSFTDAFFEAMSGFTTTGATIIDYPERLPKGLLYWRSLTQWIGGLGIVFFTIAILPSIVGGSVKVFAAEATGPIKSKLHPRLSTSAKSIWVVYLMLTVACILSYKLCGMGWFDAFNYSMTSTATGGFATESGSIMTFHSPAEEYVCSLFCFLSGVNFTLMYASAVGMDIRKLLKNSEFRLYALMVLSFALFIAFELVYRNHYDIEHAFRSAIFQVVSFITTTGLFSDDAGKWPHVTWVVLAACMFFGGCSGSTSGGIKSIRGVMLLKVIRNEFRQILHPNAVLPMKIDGVNIPQSKRVTLLGFIGLYLVLTLFCAFTMIAFGIDNTNAITITLSSLGNVGPTLGMEIGPTMSWAQLPDIAKWICSFLMLVGRLELFTVLVLFTPAFWKEN
>NC_015311.1|WP_013670499.1|253704_255045_+|Trk-system-potassium-transporter-TrkA
MKIIISGAYAIGTYLAKLLSRDKQDIILLDENPENLEKISSEFDLLTMECSATDISGLKEAGAEHADLFIAVTPNEPVNIAACVMAHQLGAKKTVARVDRPAYIEEQNKELFHKMGVDDVIYPEILAAKDIINGLKMSWVRQRWDVHDGALVMLGIKLRETCEILDRPLKEISGPNDPYHVVAIKHNDETIIPGGNDTLQVYDLVYFMTTRQYIPYIRKIVGKEHYVDVQNVIFMGGGKTAARAVKMLPEYMHAKIIEQSPERCEELNNIFNEDTLVINGDGRDIALLKEEGIRNTQAFVALTSNAETNILACLTAKRMGVRKTVASVENFDYVGTAESLDIGTIINKKAVAASHIYQMMLDANVENIRFLMSVNADVAEFTPSPESKITRKPVKDINLPKGVTIGGLVRNGEGMLVSGNTQIEAGDSVVIFCYNVDMKKVEKLFI
>NC_015311.1|WP_013670510.1|268190_269582_+|asparagine--tRNA-ligase
MKRTKVVDALACTDFGKDINVKGWVRSHRSSKAVDFIALNDGSTIKNIQVVVDPSKMDAEELKSITTGACISVVGTLVESQGKGQTSEIQCKEIEIYGLCPSDYPMQKKGQSFEYMRKYGHMRLRTNTFGAVFRIRHNMAIAIHRYFHEHGFYYFHTPLITGSDAEGAGNMFQVTTLDLDRIAKSGKVDYNADFFGKRTNLTVSGQLEGELGATSLGAIYTFGPTFRAENSNTPRHLAEFWMVEPEVAFIDKDELMDLEEDFIKFCVRWALDNCKDDLEFLNKMIDKELIARLEGVLKEDFVRLTYTEGIEILRKAVADGVKFEFPITGWGMDLSSEHERYLVEEHFRRPVIMTDYPSEIKSFYMKKNPDGKTMQGTDVLFPRIGEIIGGSVREENYDKLLAEIDSRGMKREVYDWYLDTRKYGTCPHGGFGLGFERLILFVTGMQNIRDVIPFARTPKNAEF
>NC_015311.1|WP_013670511.1|270147_270636_-|DNA-starvation/stationary-phase-protection-protein
MRTLEFLGLDEKKVQYVVKELSVLLADLQVYYSNLRGFHWDVKGHGFFVMHSKYEELYNDAAEKVDEVAERILQLGSAPESRYSAYLQTSEIKEAGVVSCAKEGIDLLLDSYKTLIVRERKIIELASDAKDDTTVSLISDFLKDQEKTVWMLVAVRSQSCAE
>NC_015311.1|WP_004351338.1|271165_272650_+|IMP-dehydrogenase
MSSFVAEKIMMDGLTYDDVLLIPAYSEVLPKEVELKTKFSRHIDLNVPFVTAAMDTVTESSMAIAIAREGGIGVIHKNMTIEDQARQVAIVKRAENGMIYDPVTIRQGRTVKDALDMMADYHIGGIPVVDGENHLVGIVTNRDLRFERHLDKLIDEVMTKENLVTTHQQTDLTAAAQILQENKIEKLPVVDRENRLVGLITYKDITKAKDKPMACKDEKGRLRVAAGIGVTGDTMERAQALVAAGVDAIVIDTAHGHSAGVIGKLHDVKAAFPDLDVVVGNIATGEAAKFLVDNGADAVKVGIGPGSICTTRVVAGVGVPQLTAIYDVYKALEGTGVPLIADGGLRYSGDVVKALAAGGSSVMIGSLVAGTEESPGDTIIFNGRKFKSYRGMGSLEAMEQKNGSRDRYFQNDIRDAKKLVPEGIAGRVPYKGTVQEVIYQLVGGLRSGMGYCGAASIGNLHSAKFTRITNAGVMESHPHDITITSEAPNYSRPE
>NC_015311.1|WP_013670512.1|272724_274149_+|peptidylprolyl-isomerase
MKFKALLSVALLSATMAYGQTDPTIMTINGQPVSRSEFEYSYNKNNTDGVIDRKSVDEYVPLFVNYKLKVQAALDAHLDTLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGLWHCAHILIGMGQHTSKEEEAAARQLADSIYTALQKGADFADLAKRYSTDTSSAKNGGDLPRLQKGQTVAEFEKAMLTLKPGETSRPVLSPFGFHIIRMIGHESLPPYDSLRSDIMQYIEMRGLRDQIINQRLDSLVQAGGKDITQEQILDRKLAELEEKDADLKRLIREYHDGLLMVEMSNRTVWDKVAKDETALEAYFRKHRKQYKWAEPRFKGIAYHVKKKADVDAVKECVKGLPFSKWAERLRNTFNKDGNIRIRVEKGIFRKGDNALIDREVFGQKATVAPVEGYPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRRKYKVVIDKAVLSTVNRH
>NC_015311.1|WP_004351321.1|274172_275615_+|peptidylprolyl-isomerase
MKINKRKTVVLLAGTVLTAMGLHAGTSRAGGPGTLSDSLKTVPAATDRANNVVDEVIWVVGDEPILKSEVEIMKLQGEAEGMKWDGDPECVLPEQIAVQKLFLHQAALDSIEVTESEIAQGIDQQINYWISLPQIGSKEKLEEFQHKSMAQIRQDLHDDYKNRQLVQKMQEKLVSDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINRIKNQLRDYTDRITKGETSFATLARLYSEDPGSARQGGELGYMGRGMLDPAFAAAAFNLTDPKKVSKVVESEFGYHIIQLIDRRGDKVNCRHILLKPNVSMASIDAAKERLDSIGKDIRNGKFTFEDATAYLSDDKDTKNNHGLMVNSSENARTSRFKMKDLPTEVARVVDTMKVDEVSQPFQMVNPRGKVVCAIVKLKERTPEHRATITEDFQAMRDIVTAQRRKDILHDWVVKKVKETYVRINPRYKSCKFQYEGWFK
>NC_015311.1|WP_036875887.1|275668_277543_+|hypothetical-protein
MVLCLFGLWLSQPVYAQKTVEKKGSRFYIDHADNLRHNQMVLPDVQIAKGNVRFRYKGTTLKCDSAYFNEKANWFKAFGRVHITRPGGISIDCHRIHYDGFDQTVHARKNVVVRQPGRSLHCDSLDYNTASKVANYFGGRGTLVYNGNTVVADEGDYNTDSHDANFFGNVVMFTPKYRINTPEAHGNTETGIVHVVGKSVIRTAKGEVIHTNDGTYNSKTDHMELNGRSTITSPKQDVEGDNIIYNSTTGEAEGHGNVKIVDKANKRTIVGQDVFYNEKTGHSNARGNVKIDDRKAQRVITGDDVIYNAKTGYSEGHGNVKIVDRLKQRTVTGRDLTYNSNTHEGTGEGDVYYIDYKRKHAFSGDYLHYTDSAAIAFGGKPGPVAKDFSQGDTLFVHADTISMKGFHMNTPGMYREIYGVNNVRAYRTDVQAVCGFLVANTKDSCVTLYDYPIVWSGNRQLVGDSIKAYMNDSTIRQAYVYGNAFSIETLPDRKHYNQISSRDMRADFVDGAVRRIDAWGNVEVVFYHTDKDSTLIGHNYTETDTLRMYISPLRKLQKIWMSKSDGVISPMTQIPPDRLTLPHFELFDEVRPKDKNDIFRRAARKTGATVRNARVSLPPRQHIE
>NC_015311.1|WP_013670514.1|277810_278098_+|hypothetical-protein
MLFFQSSRPRRFHHEYMFVDERKELLKDMEQRIRHELNEKEVPESSRRTELRRRIGGSLKPQVLRQRHNRYTAMWVSLILSAGIIALLTLLLFIF
>NC_015311.1|WP_004351333.1|278109_279963_+|DNA-mismatch-repair-endonuclease-MutL
MSDIIQLLPDSVANQIAAGEVIQRPASVVKELVENAIDAEAKHINVLVADAGRTSIQVIDDGKGMSETDARLSFERHATSKIRKADDLFSLHTMGFRGEALASIAAVAQIELKTRMESEELGTHLSIAGSRFTGQEPCSCPVGSNFLVENLFFNVPARRKFLKSNTTELNNIINAFERIVLVWPQIAFTLHSNGTELFSLRACNYRQRIVEIFGKRLNQDLLPIDVDTSLCRIHGFVGKPESARKKAPHQYFFVNERYMKHPYFHKAVLTAFDRLIPQGEQVPYFLYFEVPAENIDVNIHPTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPSIDFDTEGKPDIPVFSPNGETTAPKIDFNPSYNPFRPTSRATAPKGWEELYPGPDAETETRQPQLFGQQDTTGTTDSETIVSSVATQPAAESMIEDQAPSHYQYKGCYIMTAVKSGLMIIDQHRAHIRILYEAYLRQLSEHKAHSQKVLFPEMVQFAAADQLALDRILPEMAEMGFQLDSLGGGSYAVNGVPAGIEGLNVVTLINEMVASAVDSGTSVKEDIDRTLALSLARNAAIPQGQVLGNAEMDNIVNELFACTNVNYTPSGEPVIAILKQQDIEHLFDS
>NC_015311.1|WP_004351306.1|280182_281331_+|OmpA-family-protein
MIMALAGCTMTGFAQDETLTEKYSVATNSFWSNWFVQVGADWNAWYSNQEHGRNAAESPLKRFRSNPGASIAIGKWFTPGLGLRTKVQGIWGKRVGASLNPASRLDNGNKYWIAQEQVMFNMSNLLCGYNENRVWNVIPFAGAGIGRSMSANRYAMGLSAGVQSSWKVCKLMRVYLEAGWNRYEGDLDGVGEATTKARGWASHDNNLYAEVGLNFNLGKGTWNKVPDVDAINAQHQAALDALNAKLRDSEAENARLRDQLANQKPVETTSESVKQLVNTPVSVFFNINKSTIASQKDLVNVQALAKYAKDNNNSLLVTGYADSATGTPAYNQKLSERRANTVANELVKMGVENNKITAVGKGGVETLSPISFNRRATVQVTE
>NC_015311.1|WP_081457131.1|281549_283370_-|lipoyl-synthase
MKYILLPEPETIHQLPFYFAVEEYVARHYTDDEYFVGWRVNPTVMLGRNQLIDNEVNTGYCKLHEIDIFRRKSGGGCIYADEGCIQFSYISRTSNANEAFACYMQRMARMLQGLGIDARLSGRNDILIDNAKVSGCAFYQLPGRSVLHNSLLFDTRLDHLSNALTPAKEKLQSKGVESVKQRVMNLAAYTHLGISAFMDYVRREMCGAEVLQLTDEDMKGVAELEKELASDSFVYGKNPKYTVVRKHRFEGVGTLEVHLELKNNIIGNINMVGDYFLLGDIDHDFLALLKGCAFTREAVGEMLQDVDLSAIVRGLQLRQFLRLLFGREPHVMKPAWLKIDLTSKKSTGETAGILARHHLNTICTSGLCPNRAECWMARTATLMIGGEICTRKCRFCNTLSGRPHHLDPNEPCHVAESIKALRLRYAVITSVDRDDLPDYGAAHWIRTVEEVRRMNPDTKIELLIPDFMGRSDLVRQVMATRPHVAGHNMETVRRLTPSVRSVARYDRSLEVLREIAGCGITAKTGFMLGLGETHEEILETMDDILATGCRRLTLGQYLQPTAHHLPVRAYITPEQFAEYKRIALEKGFRHVVSGPLVRSSYHAAEE

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Crispr_ID: NC_015311_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_2

402018-402084

Orphan

Consensus_repeat	Method
ATCACCGCTTATCACTGCTTATCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_2

>merge|NC_015311|2|402018-402084|CRISPRCasFinder
ATCACCGCCCATCACCGCTTATCACTGCTTATCACACCGCCTATCACCGCTTATCACCGCTTATCAC

>NC_015311|2|1|402018-402084|CRISPRCasFinder
ATCACCGCCCATCACCGCTTATCAC	TGCTTATCACACCGCCT
ATCACCGCTTATCACCGCTTATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013670599.1\|409939_410797_-\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|187630
NC_015311.1\|WP_013670596.1\|403280_406661_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273041
NC_015311.1\|WP_013670586.1\|390743_391241_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143629
NC_015311.1\|WP_013670600.1\|412529_413753_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NC_015311.1\|WP_044112247.1\|411741_411996_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112245.1\|407813_409778_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273041
NC_015311.1\|WP_013670592.1\|400013_400451_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NC_015311.1\|WP_044112242.1\|398253_399990_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_015311.1\|WP_013670588.1\|392944_394753_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NC_015311.1\|WP_013670585.1\|390415_390784_+\|antibiotic-resistance-protein-VanZ	unknown	unknown	unknown
NC_015311.1\|WP_013670597.1\|406748_407531_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366834
NC_015311.1\|WP_013670595.1\|402109_403105_+\|esterase	unknown	unknown	gnl\|CDD\|283403
NC_015311.1\|WP_044112249.1\|413925_414135_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_015311.1\|WP_013670601.1\|414127_416629_+\|phosphoadenosine-phosphosulfate-reductase-family-protein	unknown	unknown	gnl\|CDD\|237510
NC_015311.1\|WP_013670589.1\|395353_397336_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NC_015311.1\|WP_013670587.1\|391689_392805_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_015311.1\|WP_155813200.1\|411992_412184_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112629.1\|397336_398254_-\|DUF4292-domain-containing-protein	unknown	unknown	gnl\|CDD\|372917
NC_015311.1\|WP_013670584.1\|388957_390319_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NC_015311.1\|WP_013670593.1\|400614_401952_+\|dNTP-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234897

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013670600.1\|412529_413753_+\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.45889e-47
NC_015311.1\|WP_013670596.1\|403280_406661_+\|AAA-family-ATPase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	1.96188e-39
NC_015311.1\|WP_013670586.1\|390743_391241_-\|CYTH-domain-containing-protein	gnl\|CDD\|143629	cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.	2.70615e-75
NC_015311.1\|WP_044112245.1\|407813_409778_+\|AAA-family-ATPase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	2.90058e-113
NC_015311.1\|WP_013670592.1\|400013_400451_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.14679e-88
NC_015311.1\|WP_044112242.1\|398253_399990_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.7945e-23
NC_015311.1\|WP_013670588.1\|392944_394753_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	1.73256e-171
NC_015311.1\|WP_013670599.1\|409939_410797_-\|enoyl-ACP-reductase	gnl\|CDD\|187630	cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR. This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.88822e-97
NC_015311.1\|WP_013670597.1\|406748_407531_+\|hypothetical-protein	gnl\|CDD\|366834	pfam01839, FG-GAP, FG-GAP repeat. This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N-terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.	0.00834641
NC_015311.1\|WP_013670595.1\|402109_403105_+\|esterase	gnl\|CDD\|283403	pfam05728, UPF0227, Uncharacterized protein family (UPF0227). Despite being classed as uncharacterized proteins, the members of this family are almost certainly enzymes that are distantly related to the pfam00561.	2.59355e-13
NC_015311.1\|WP_044112249.1\|413925_414135_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	3.89423e-07
NC_015311.1\|WP_013670601.1\|414127_416629_+\|phosphoadenosine-phosphosulfate-reductase-family-protein	gnl\|CDD\|237510	PRK13795, PRK13795, hypothetical protein; Provisional.	1.51611e-35
NC_015311.1\|WP_013670589.1\|395353_397336_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	5.91548e-24
NC_015311.1\|WP_013670587.1\|391689_392805_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	4.66897e-152
NC_015311.1\|WP_044112629.1\|397336_398254_-\|DUF4292-domain-containing-protein	gnl\|CDD\|372917	pfam14125, DUF4292, Domain of unknown function (DUF4292). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 243 and 287 amino acids in length.	1.05398e-27
NC_015311.1\|WP_013670584.1\|388957_390319_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	0
NC_015311.1\|WP_013670593.1\|400614_401952_+\|dNTP-triphosphohydrolase	gnl\|CDD\|234897	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	1.65557e-136

>NC_015311.1|WP_013670593.1|400614_401952_+|dNTP-triphosphohydrolase
MDWQQLISNKRLGQEDRHALRHDDRSEFKRDSDRLIYSAPFRRLQNKTQVFPLPGSVFVHNRLTHSLEVASLGKSLGDDVARKLTEVHPELRGTLFEEIGTIVQTACYAHDMGNPPFGHSGEKAIQAFFTEGPGAGLKKDVSRRFWDDITHFEGNANAFRLLTHRFLGRREGGFVMTYSTLASIVKYPFSSSYAGKHGKFGFFATEEKTYQKIADELGIIRKDRSEMGICYVRHPLTYLMEAADDICYEIMDIEDSHKLKLLSSEETADLLLGFFDEDTRQGIRRRIVDEGVTDRNEQVVYFRACAVGLLEAECVRAFVRHEEEILNGTFEGSLIKHISELPRRAYEHCTEVSKDKIYRSKAVLDVELSGYKIMETLMEALIGAAAEPDHFHSQQLIHRFSSQYDIQSPDKETRIMAVLDYISGMTDIYALDIYQKINGISLPLV
>NC_015311.1|WP_013670592.1|400013_400451_-|dUTP-diphosphatase
MIRIKVINKGHQQLPAYATSQSAGMDLRANIDTPIVLQPMERRLIPTGLHIALPAGFEAQVRPRSGLALKHGLTVLNSPGTVDADYRGEIMVLLINLSSAPFTVNDGERIAQMVIARHEQATFVEVEELDETERGEGGYGHTGIK
>NC_015311.1|WP_044112242.1|398253_399990_-|tetratricopeptide-repeat-protein
MFGNGLLNVVKMRRMVLVLALSGASLAVQADRKDSLQNYDYFYLEALRQQDMGNLTAAFDLLCHARDLNPQAPEVYYQLAGYYVDMKNDSLARAYFEKAAALDPDNTAYQEKLGQLYVTQKDYPDAIKAYERLYGSNKARTDVLQLLYQLYGSQNDYRKMISTLERLETVEGSNEQISLSKMQIYEQMGEKRKEYDELKSLVDSHPLELNYQVMFGNWLLQNGKKKEALQKYRDVLKDDPDNSLARLSMMDYYSSIGDQTTVNAIRRELLQSAKTEQNTKVELLRQVIAASQKDNTPDSTEVMRLFSVALAAPQENADILMLKAAYMTLRKMPKTDINHVYEQAIEVEPDNSRARILLIQNIWETEDYDKVIAICRPALEYNPDEMAFYYFQGMAQYQKHENDAALTTFRKGVGQIKPDSNPDIVSDFYAIMGDILHEKGLNDEAFQAYDSCLQWKPDNTAALNNYAYYLSVENRNLAKAEQMSYKTIKAEPSNSTFLDTYAWILFQEKRYEEAKIYIEQAIRNDSTLSGVVKEHAGDIYAQTGDMEKALEYWQQSLEGGNTSATLKKKIQQKKYIAE
>NC_015311.1|WP_044112629.1|397336_398254_-|DUF4292-domain-containing-protein
MTKTKLLAGMAVFVLASCGTHKAVVEQKPVLKSVPKSTTGDTLRTADDSTRNKLSYIQHISDKALYQKNVVSNLTFTVNNGRKDITVPGVLRMRKDEVVRLQLLLPILHSEVGRIEFAKDYVLFIDRIHRQYVKANYNDVAFLRDNGISFYTLQALFWNQLFIPRQQRVSEADMSQFSVDTHRLEVDGSAKIVLRDGKMTYKWVIPARWDQIAHTAVSYTSPTHGTSELSWFYKDFKPFGSKQFPASQSVEIHTPAIGQRPAKTLKASFELDGFSDASDWEPFTTPSDKYTKVSVEEILGKLMNF
>NC_015311.1|WP_013670589.1|395353_397336_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MKRLFLLFLFSSIGVLTTSAQYTKKNGTKLKTPVVQSIPAPSIGTGKSGAAQKNARRTKTETPAPAVKGQRQTSAKGQPQPLVKGRQPQVKGHQPPQGKVQQNVRGKASARNARTGRKGAKAPAYVTTEEIKGLQKQNQQLQKEISEHEEEVKIKQKDVDSRLQKIVRLDTEIGQHQRTIDNIATDIKGLDTNIGILKGQLSSLEAQLGERRARFIRSMRYMARHRSIQDKLMFVFSAKSLTQMYRRLRFVREYAAYQRAQGEQLKAKQQQVDQKHTQLKQVRGNKSNLLYKDRQVHAQMERKRVEQQTVVASLQNDQKVLQGVIAQRRQQQQALNAQIDRLIQIEIQKARARAIAEAKAQAAARAAAARKRAEELARKKAAAEAAARENARRIAEARAREEKAKAAARAAAEAAEKARQEAAAKAAAARAAAEKTRQEALQKERAAARERAIRKAEQQEAAARAAQEKAEARADQEKARADQAAREAEATRVAAERKAAADRERAAREAAAARASASESNDMLSSADRAITGSFANNRGRLPMPLSGRIVSHFGQYNVAGMSNIRLNNDGINIKGAPGSAVRSVFMGEVSGVFMAGGMSVVMVRHGIYISVYANLGSVSVGKGQKVGTGQTIGTVGRSGILQFQLRKETAKLNPEQWLR
>NC_015311.1|WP_013670588.1|392944_394753_-|long-chain-fatty-acid--CoA-ligase
MQTNCHLSVLIHEQAKKYGARPVLTFRSFGSLKWKTVSWNQFSMRVKEVSNALLNLGLKPQETIAVFAQNCIQYLYTDFGAYGVRVISIPFYATSSEQQIQYMIQNASVRFLFAGEQEQYDKAHRVAALCPTLERIIVFDPSVRISSHDPNSIYFEDFLKLGEGLPREPEVEERWAAAEEDDICNILYTSGTTGESKGVVLTYRMYRAALEANDRCVPVDEKDRIINFLPFAHVFERGWAYLVLSEGAQMIVNTYPKEIQQSMRETHPTCMSAVPRFWEKVYVAVKERMDNSGAVQRKLFYHALSVGRKRNVQYLSHGKRVPLALEMEYRVVNRTILSLVRKQLGLEHPNIFPTAGAYVSPEVEEFVHSIGLNMIVGYGLTESLATVSCDHLGEPYTIGSVGRPIEGIEIKISDEGEVMLKGPTIMPGYFRRDTTNAEVFDKDGFFHTGDSGYLKDGELFLKERIKDLFKTSNGKYVAPQMVEGMLLVDKFIEQISVIADQRKFVSALIVPEYDVLEEWAKENHIEFNDREELCRNRQVNAMMRERIETLQQRLAPYEQIKRFTLLPHHFSMESGELTNTLKLKRSVVNRHYQDVIDKMYEE
>NC_015311.1|WP_013670587.1|391689_392805_-|peptide-chain-release-factor-2
MITADQLKDIQVRTDALHRYLDIDRKRIEFEEEQLRTQAPDFWDDPKRAQEQMKKVKDIEKWIKGYDEARSLTEETQLAFDFYKDELVTEEEVDAAYAKALKVIEDLELKNMLRQEEDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAHGYKVTVSDIQEGDEAGIKSVTMKFEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSWDTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKSQLYDRAMKKRMEEQAKIEAGKKKIEWGSQIRSYVFDDRRVKDHRTNYQTSDVDGVMDGKIDAFIKAYLMEFPSEE
>NC_015311.1|WP_013670586.1|390743_391241_-|CYTH-domain-containing-protein
MSGLEIERKFLVHKKMDWKRLASSRSHIQQGYFAAVNTVRIRIRDDRGYLTIKGPSHDGGLSRYEFEKEITLEEARQLMLLCEPGVIDKHRYLVPFGRHTFEVDEFHGDNEGLVMAEVELGSEDEAFKKPGFIGMEVTGNRHFYNSHLRRNPFRIWRGSVPEEYR
>NC_015311.1|WP_013670585.1|390415_390784_+|antibiotic-resistance-protein-VanZ
MGYPLSSVIIIGIWVLCFMDIPETPLSEVRFIDKWTHSAMYLILGLSISLEYLRTKRRGSYRTLVLWAGLMPAVMGGLIEILQANCTGGRRSGEWLDFLADAAGTVTALAIGILLVHCRARS
>NC_015311.1|WP_013670584.1|388957_390319_-|sodium-dependent-transporter
MVQQKRAKFGSKLGMILATAGGAVGLGNVWRFPYMAGQNGGAAFILIYIGCILLLGLPCMVSEFIIGRHAASNTARAYTKLSNGTAWKWVGYLGVLTGFLITGYYAVVSGWCLQYGLASVVGHLHGSPAYFQSYFSDFSTNPWKPVLWTAVILLITHYVIIHGVRNGIERASKIMMPALFLLLLAIVVASCLLPGAGKGVEFLLKPDFSKVTGDVFLGALGQSFYSMSIAMGCICTYASYYSRHTKLLNSAVQIGVIDTVVAILAGLMIFPAAFSVGVSPDSGPSLIFITLPNVFEQAFASMPVVGYVISLSFYLLLSMAALTSLISLHEVSTAFFQEELHISRPRAAMIVTGGCFLIGAVCSLSLGDWSFLQVAGIDLFDVFDFVTGQIFLPVGGLLTCLFIGWYVPKRLVRDEFTNWGTSRSIFFGAYYFLVRFICPLAILAIFLHQLGVF
>NC_015311.1|WP_013670595.1|402109_403105_+|esterase
MENQYKKTFPDLMAGKKIIYVHGFMSAGSTHTAQILRDYMPQATVIAPDLPIHPEEAMELLRNLVGTEKPDLIIGTSMGGMYTEMLYGIDRICVNPAFQMGATLTESNMMGKQVYQNERQDGVQEVIVTKALVKEYRDMTEQCFSQVNEEERQHVFGLFGDADSVVHTFDLFREHYPQAIRFHGEHRLIEKAIFHYLMPVVRWIDDRQEGRERRTVFIDQNTLADGYVKPKSSLHKAYEFLLDNYNVFFVCPAPTNSPEAIARQQEWIEETFSTPAWNHVVFTNQPQLLYGDYLISSTGNDDFLGTTLHFGSDEFKAWEEIITFFERLGGQ
>NC_015311.1|WP_013670596.1|403280_406661_+|AAA-family-ATPase
MAHELFTRIADILSAPAEAQPRIMHEALVIACHEGLKETRHGFGNLSSQVESLCRQHNIAPQDIVAIQKMRRHSNSSAPVLPDDVAYDCRALALFVSAVVQEPVPPFLVGRIPEHGRMTEHIQIANYRYIRCIVRKWNEETIQVAVTNQDCSEKFLTVDYTDTPEYVDFSYLRPLLREGMQLNLLDCTVTHRKVVPRLIVVEPDYLLDISAIANCFESYGHHPLLFTVNRLGTRPANKYTVLGNFAGAALDDIINHPGHYDIKDTFRSNFREKALDFATCPNFDAAAFKQEAGRQVENIKDIVDEIFRTFDRRKAILEPSFVCERLGIQGRVDLMTTDLKLLVEQKSGKNIFIERKFRNPHGSLHVEKHYVQLLLYYGILQYNFRLTPKQAHIRLMYSKYPLPDGLLEVEPLQSLLHEAIRFRNQAVATEFWMAENGIGRILPLLTPQTLNTGKQNDRFYHEYLLPQLTETLAPLHRLDSLERAYFMRMMTFVIKEQLVSKVGAQEGVGNSCADLWNMPLAEKKETGNIYTELTLMGKERSTSSNGYDTVTLCIPRQGDDFLPNFRRGDMVYLYAYRKNEEPDVRESILFKGSLQEIHSDRIVVHLSDGQQNPDLISGERFAIEHAGSDIGGTSAIRSLYTFITSETDRRRLLLGQRAPRVDKTLRLSRGYHPGYDEILLKAKQAQDYFLLIGPPGTGKTSQALQFLVREQLAECNNVQSSKPKAQSSILLLAYTNRAVDEICNMLSENMLDYIRMGNEFSCSPEYSDHLLQEVIDESPSLHTIRSTLENAQIVVATTSTMNSRSALFNIKQFDLAVIDEASQILEPNIIGLLTSRHKEERAIRKFILIGDHKQLPAVVQQSDAEVIVEDETLEAIHLTSCANSLFERLILTERAAGRTDFIGTLHKQGRMHPDIADFANRRFYAKEQLECVPLAHQLEQTLPYHEVSEDETDDILKTHRMIFIPSKPCRQLNVSEKVNTEEARIIADLLRRLHRQLGSDFNPQKSVGVIVPYRNQIAMIRKEIEKLGIPGLEEISIDTVERYQGSQRDIILYSFTIQSRYQLDFLTTNTFYEDGQPIDRKLNVAITRARKQLVLTGNEATLRQNPLFAELIDYIKEKGGYYEDGC
>NC_015311.1|WP_013670597.1|406748_407531_+|hypothetical-protein
MPEGVKRMIMMRKKTLFLLPVLCVMLLSCTDRKPVSSVHEEPVLRKDTVSAKKMEVAETVRAKPLTYKILVPFLYRLCDPDTLIDRNWTELYQQGKDYYVGKAHYRIRKEEDPCTGDLASDLRGKRKTILFVNQLPIRMGKVQVADVELSDSSYLEPGTVRNFTFSGRRYKLEAKAKGEDIYKNYCLLLNGERIVREAQVDDAWFRLLFAGDLDGDGKLDLVLSVPAHYENLRVVLFLSSCAQGGQQLGKAAEVDDDFSC
>NC_015311.1|WP_044112245.1|407813_409778_+|AAA-family-ATPase
MFQETPIQLLQRQRLLLQMEYYAEKETFRKQTEATGMQRKVKRGDAWFPIKVGKRFYNGLNQLCIEVFRTQDSDIEHNFECGRPLLFFRYVDGGDKAGGRLKYYGFTGTVSYVEGDRMVVAVPDSAPLPDLQSASEQTGCQLGFDETSYQMMFDALDRTMKAKGNRLAYLRDLFCSRQKAEKFSFSPIRLPWLNPAQERAVNEVLWAKDVAVVHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDWISEKLIDRGINVLRIGNPTRVNDKMLGFTYERKFEAHPDYPQLWSIRKAIRELRNNRKRGSESYHQKMDRLKSRATELEIRIHTSLFGEARVIASTLVGAGSRVMEGQKFTTLFIDEAAQALEAACWIAIRRASRVILAGDHCQLPPTVKSIAALRGGLGKTLMERIVENKPEVVTLLKVQYRMNEEIMRFSSDWFYGGQVEAAPQIKYRGILDYDNPMVWIDTSDDTMTAASGSTASEGNQTSVPSVEDKEASFHEQFVGSSFGRINKGEAELTLKTLKDYFTKIGRQRVLDERIDVGIISPYRAQVQYLRSLIKKREFFKPYRSLVSVNTVDGFQGQERDVILISLVRSNEEGQIGFLRDLRRMNVAITRARMKLIILGNVRTMTRHPFYKKLWDSLSTDS
>NC_015311.1|WP_013670599.1|409939_410797_-|enoyl-ACP-reductase
MSYNLLKGKRGIVFGALNEKSIAWKVAERAVEEGAAITLSNTPVAVRMGTVSALSEKLHCEVIPADATNVEDLENVFKRSMEILGGKIDFVLHAIGMSPNVRKHRTYDDLDYKMLDTTLDISAVSFHKMIQSAKKLDAINDYGSIVALSYVAAQRTFYGYNDMADAKALLESIARSFGYIYGREHHVRINTISQSPTMTTAGAGVKGMDKLFDFANRMSPLGNASADECADYCIVMFSDLTRKVTMQNLFHDGGFSNVGMSLRAMATYEKGLDEYKDENGNIIYG
>NC_015311.1|WP_044112247.1|411741_411996_-|hypothetical-protein
MILSLDKKDRVYHEYKRQNGERIIVYYSEKRVKKDAYRRDSGIARLREASKSGHITKQQVNKRGYNKFINYGCCLHWSQQAFLV
>NC_015311.1|WP_155813200.1|411992_412184_-|hypothetical-protein
MVRIFTMIPMVDDFRQRFTLGNDFVVVADSGQMNKNNVALLRKADYKYILGAHIKSGSTGIRQ
>NC_015311.1|WP_013670600.1|412529_413753_+|site-specific-integrase
MAKLENKAKENPKLEQNMLADGRISLYLEYYLGREETPILDDNGNPVLYETGKMIGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESMLGYRLKKDRSINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVYEFSIKPELITKDMMKHFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMQKDPCKGVVCKVDDQVLRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLPSYESCSKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAINSLPELKI
>NC_015311.1|WP_044112249.1|413925_414135_+|helix-turn-helix-transcriptional-regulator
MDKDINRIKVVLVEKKRTNKWLAEQLGCASTTVSKWCTNACQPPMETYLKIAKLLDVELTELVRTENDV
>NC_015311.1|WP_013670601.1|414127_416629_+|phosphoadenosine-phosphosulfate-reductase-family-protein
MYKITWDKETGGVLLHSRIVDGTLGISPRPVFWEELDLLKLNELGWKYPHTEEPLLWAINKQYWYQGELMFEAKGANVYDAATIIFQPGKDNVELNPIDVKKMLKRNAEFMFLLESEAIEFIRETFIQYAGARKSVAKVAANQLDYETLAKRMEAKIKKKMAIVREDCDSFEIMPLDTAEEQGKKVFHTTKIDKFLASFSGGKDSQVVLDLCTRAIPSTEFEVIYSDTGYELPPSLDLYQQVQDHYHKLFPDLKFSLTRNHESVLNYWDKIGTPSDKHRWCCSIMKTAPLYRSLKIEGTNKQAKALAFEGVRAEESVMRSNYERIGKGVKHDTVINARPILNWNTTEIFLYLFAHDLPLNEAYRFGKPRVGCLICPFSSPWDDMIVNKRYKQDLKPFLSRLVNISKQRHIPNLEEYIKEHKWKLRASGNDIGSKTKVLFPKQFPTFVANVSNAQKTIEHWLPVLCEYNIMGEGNKKFGELCFDKTVYRFDITYNTEHDYTFILHEVQNPKLVQLIKRIIYKSAFCINCEGCEVECPTGALSVYPEIKIDKSKCIHCHKCLLFHDQGCIVANSLIMTTSTNTKGGGISKIGTFGIHSEWLQEFLSDPDGFWTSNSLGNKQEQSFKAWLIDAEMIDQKKNLTPFGDFCIKHRENELDLIWELIWINFAYSSVLTNWFINTINPDQQFTKALLDELALNEFDGTKSTITYAIGGFMQIFKYSPIGDFLSQGQSHDGKNYFRGRHEGLSEVALAYSIYKYATSKGIRSLRISDFYVEDCQTGPVKEFAISKLTFTKLLRQLNSASNRVLIAELNMGLDSITLREDLSSMDILKQLVL

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Crispr_ID: NC_015311_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_3

518754-518856

Orphan

Consensus_repeat	Method
GGTGTTGATGGTTAGTAGAAAGTCTCAATATACATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_3

>merge|NC_015311|3|518754-518856|CRISPRCasFinder
GGTGTTGATGGTTAGTAGAAAGTCTCAATATACATCAAGATTCTGAATGAGATGACCGACGAGCACGGTGTTGATGGTTAGTAGAAAGTCTCAATATACATCA

>NC_015311|3|2|518754-518856|CRISPRCasFinder
GGTGTTGATGGTTAGTAGAAAGTCTCAATATACATCA	AGATTCTGAATGAGATGACCGACGAGCAC
GGTGTTGATGGTTAGTAGAAAGTCTCAATATACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013670670.1\|510660_512202_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_015311.1\|WP_013670685.1\|527142_528789_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340824
NC_015311.1\|WP_013670682.1\|522407_523238_+\|DUF4595-domain-containing-protein	unknown	unknown	gnl\|CDD\|214015
NC_015311.1\|WP_013670676.1\|516819_518037_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_015311.1\|WP_013670679.1\|520187_521177_+\|virulence-protein-RhuM/Fic/DOC-family-protein	unknown	unknown	gnl\|CDD\|226452
NC_015311.1\|WP_013670686.1\|528935_529421_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112267.1\|512612_513065_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_004361059.1\|521263_521488_+\|DUF3791-domain-containing-protein	unknown	unknown	gnl\|CDD\|372250
NC_015311.1\|WP_044112268.1\|515706_515922_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670678.1\|518912_520145_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_015311.1\|WP_013670684.1\|524531_527090_-\|alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340852
NC_015311.1\|WP_025067892.1\|521972_522215_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670677.1\|518390_518726_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NC_015311.1\|WP_004354391.1\|507758_508094_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NC_015311.1\|WP_013670668.1\|508195_509428_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274034
NC_015311.1\|WP_013670680.1\|521496_521976_+\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NC_015311.1\|WP_013670674.1\|513989_515609_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670673.1\|513286_513754_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670683.1\|523702_524299_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NC_015311.1\|WP_013670669.1\|509653_510649_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|379543

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013670670.1\|510660_512202_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NC_015311.1\|WP_013670685.1\|527142_528789_-\|glycosyltransferase	gnl\|CDD\|340824	cd03793, GT3_GSY2-like, glycogen synthase GSY2 and similar proteins. Glycogen synthase, which is most closely related to the GT3 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.	7.97516e-88
NC_015311.1\|WP_004361059.1\|521263_521488_+\|DUF3791-domain-containing-protein	gnl\|CDD\|372250	pfam12668, DUF3791, Protein of unknown function (DUF3791). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 71 and 125 amino acids in length.	2.54901e-20
NC_015311.1\|WP_013670676.1\|516819_518037_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.98742e-05
NC_015311.1\|WP_013670679.1\|520187_521177_+\|virulence-protein-RhuM/Fic/DOC-family-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	7.38195e-28
NC_015311.1\|WP_013670682.1\|522407_523238_+\|DUF4595-domain-containing-protein	gnl\|CDD\|214015	cd12871, Bacuni_01323_like, Uncharacterized protein conserved in Bacteroidetes. A well-conserved family of 16-stranded beta barrels resembling outer membrane porins. The interior of the barrels is mostly occupied by an insert with partially helical structure.	3.00869e-54
NC_015311.1\|WP_013670678.1\|518912_520145_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.98166e-59
NC_015311.1\|WP_013670684.1\|524531_527090_-\|alpha-glucan-family-phosphorylase	gnl\|CDD\|340852	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase. This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism.	0
NC_015311.1\|WP_013670677.1\|518390_518726_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	4.04795e-34
NC_015311.1\|WP_004354391.1\|507758_508094_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.47644e-34
NC_015311.1\|WP_013670668.1\|508195_509428_+\|FtsX-like-permease-family-protein	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	3.00439e-60
NC_015311.1\|WP_013670680.1\|521496_521976_+\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.27144e-59
NC_015311.1\|WP_013670683.1\|523702_524299_+\|DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	2.38745e-23
NC_015311.1\|WP_013670669.1\|509653_510649_+\|AhpC/TSA-family-protein	gnl\|CDD\|379543	pfam14289, DUF4369, Domain of unknown function (DUF4369). This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00578.	8.7518e-14

>NC_015311.1|WP_013670677.1|518390_518726_+|30S-ribosome-binding-factor-RbfA
MQETRQNRISHLLQKELASIFQTQTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDELLKNINANEKTIRYDLGQRVHNQLRIIPELRFFIDDSLDYIERIDELLKK
>NC_015311.1|WP_013670676.1|516819_518037_-|transposase
MLITNLISRYMKLCKAAFSAEDGAKLNKSIQTNVMEMLFLLMIIPRKCNFTQMGRYGKRGEQCYRQTAERSVNWLEMNMWLSAFAFKQGKGRNAIVIDPSFIKKAGKHTPYVGTFWPGCAGAVKHGLEILGIGVIDVDLHECMMLKAVLTTLEKGEEKKEMSLYDWYAKVLEDDKVRLQRICKVLVADSAFSKRPFIDKVMKMGFHVVSRLRHDAALFYTWDGEPTGKPGRPRVKGDKIDVRNIDMSKVEMLELEETSGKAYALKAWYKSLRRVVSLVIHELPNGVRRLYFATDENMSGRDVVEYYTTRFQEEFCFRDAKQFLGLTDCQACDRRKLDFAFNSSFTALNVAKIMCKELGTSIGRLKAQMVNAYYAQRIIDVFEKNPNTPLNKERINEIFSFAADAA
>NC_015311.1|WP_044112268.1|515706_515922_-|hypothetical-protein
MEETTKNRRVYVNPQCAIITVQENDSLMDIFSGQHNPAQPAPGPTPLNSKQGLFEEEEDAPESGHKSLWDD
>NC_015311.1|WP_013670674.1|513989_515609_-|hypothetical-protein
MKKQSAFKARMLCMVALLGTIMALTSCSSEEIAQDDSGKTPKTDKNFTTFSSVAPNTRTTMSPTGVFKWKAGDRIFVKDDKGEWQESGNTPTSETATFDFIVPGKFSTDKNYTVYYAGGSGGSGPDMVHIERFQLQRIPNNANHVGQDGDCGWGIATAATGAAADRVDFVFKIDHKAAYLKFTPYCGNNKLLNGDKVKLTTIEIFSNNDISGTYLTLDPANDRITGGIVKDTLITLSTTGGEGYDDGFPIPAVATSDANACYVVILPGTHTLRVRFGIKDLETVTTGYVTKEYPAFNYAANTVYDMPSELTVKDYSPLYYMWDAKRHYWFRHEWNKEGYVYGTDQPTHSGGHGDEYPGAAGSGGDNRYYNTDIGNVGEGTHGTFNPTSPQHVPNANEMSWYVMYGDPHWDEELWTAMGHIHSGGMWIKKKANISGFRSDLAADNETDMRTTNKSFSNTNVPHDRYKHLFLSEKTNYFYLPAFGQYKEEWFQYISEGGYYWTSSACPWGGETAYFLHFGWGGIGVDSESRAYGNLAIPFE
>NC_015311.1|WP_013670673.1|513286_513754_-|hypothetical-protein
MLELEETSGKAYALKAWCKSLHRVVSLVIHELPNGVRRLYFATDENMSGRDVVEYYTTRFQEEFCFRDAKQFLGLTDCQARDKRKLDFAFNSSFTALNVPKIMCKELGTSIGRLKAQMVNAYYVQRIIDVFEKNPNTTLNKESINEIFSFAADAA
>NC_015311.1|WP_044112267.1|512612_513065_+|hypothetical-protein
MKRLKTLILVFSVISLMSCTTSKSVVSKTADIRKYEYVTITDVMGYNGSPSLMDAEIHIYDALEMSGLKVIGDREIGQLSPRQQEKLLLAHFSVVQNETESIVSVNFVDYATGRPIASCRGAYGMGWNEEGDIRGAFKKLAAEIKNTFKK
>NC_015311.1|WP_013670670.1|510660_512202_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MLVKTFCAAVNGMEVTTVTVEVSITRGVLFHLTGLADGAVKESHDRIAAALLNNGYKFPVADITANLAPADLKKEGSSFDLPLAIAILAANEKMSHDRLGDFMLVGELSLDGTLQPVKGILPIAIKARAEKFKGIIVPKANEHEAAVVDTLEVYGMENILQVIDFFNGTTAPEPCFVDTRKEFYEHQYAFDLDFADVRGQENVKRALEVAAAGGHNLIMVGPPGSGKSMMAKRLPSILPPLSLSESLETTQIHSIAGKLHRDTGLITQRPFRSPHHTISEVALVGGGMNPMPGEITLAHNGVLFCDELPEFNKHTLEVLRQPLEDRQITISRAKYTVTYPCSFMFVASMNPCPCGYFADPTHHCVCTPGQIQKYLAKISGPLMDRIDIQCEIAPLPFKDISQSTPGEPSAAIRERVIRARTVQTERFRDYRNIHCNAQMSERMIHEFAEPDEASVTLLRNAMERLKLSARAYNRILKVARSIADLEASETVQVQHIAEAIGYRNLDRSDWAER
>NC_015311.1|WP_013670669.1|509653_510649_+|AhpC/TSA-family-protein
MRMKRIAYILVFSLLLVSCGTRSGYFKMEGRFLHMNQGELYVYSPDGGVDGLDTIKIEAGRFAYEKPCSKPSTLIVIFPNYSTQPIFAESGEAVEVKADASHLKEMEVEGTEENELMTKFRKQIANASPPQEVKYAVQFIKDHPESAVSAYLLNRYLVQTESPDYKEAARLLPLLMKEQPENITLGRLHRQLNDLGTLAVGSRLPKFAARDVNGKTVNNTSLQGKVTVIINTWAAWSYESLDLQRALNDAVKAGKIAALGICVDASTKETQRTLERDGIVFPNVCDGKMLHTPLLKTFGLTTIPGNIVIRNGKVTERNITANTIRQRYGAD
>NC_015311.1|WP_013670668.1|508195_509428_+|FtsX-like-permease-family-protein
MNFPFYIARRYLFSKKSTHAINVISLISVLGVSVATMALVVVLSGFNGFSDLVASFFTNFDPQLKIEAAKGKAMPADDALLRKVRHLPTVEVATECVEDQALAVYHDKQAMVTVKGVEDNFDSLTHISNILYGDGDFTLHAANLQYGVLGIRLAQDLGTGVAWQDYLQIYAPQREGQYDASDPTNAFVKDSLVSPGVLFQVKQTKYDKGYIITSIDFARRIFNRQGEITSLELRMRPGVDIDREKQEIQDILGRKYRVLDRYEQQADTFNIMRIEKLFAYLFLTFILMVACFNIIGSLSMLIIDKKNDVITLRNLGATDGQIRRIFLFEGRMISAAGALIGIALGLLLCWLQQTYGLVQLGDQAGNFVVNAYPISVHPEDIIVIFFTVILVGWLSVWYPVRYMSRRLTKE
>NC_015311.1|WP_004354391.1|507758_508094_+|30S-ribosome-binding-factor-RbfA
MQETRQNRIARLLQKELASIFQTQTRMMHGVLVSVTRVKISPDLSVCTAYLSIFPSEKGEELLKNINANEKTIRYELGQRVHNQLRIIPELRFFIDDSLDYLDRIDELLKK
>NC_015311.1|WP_013670678.1|518912_520145_+|ABC-transporter-permease
MNFPFYIARRYLFSKKSTHAINVISLISVLGVSVATMALVVVLSGFNGFSDLVASFFTNFDPQLKIEAAKGKAMSAKDPSLLKVKRLPIVEVATECVEDQALAVYHDKQAMVNVKGVEDNFDSLTHISNILYGDGDFTLHAANLQYGVLGIRLAQDLGTGVVWQDYLQIYAPQREGQYDASNPTDAFVKDSLVSPGALFQVKQMKYDKGYIITSLDFARHIFNRQGEITSLELRMKPDVDIDKAKNDIQTLLGDKYKVLDRYEQQADTFNIMRIEKLFAYVFLTFILMVACFNIIGSLSMLIIDKKEDVITLRNLGATDGQIRCIFLFEGRLISAAGAVIGIALGLLLCWLQQTYGLVQLGDQAGNFVINAYPISVHPEDIIAIFLTVILVGWLSVWYPVRYMSRKLTKE
>NC_015311.1|WP_013670679.1|520187_521177_+|virulence-protein-RhuM/Fic/DOC-family-protein
MTETLNDKIIIYQSEDGKTQLDVKLEQETVWLTQKQIAELFGTKRPAITKHLKNIYASEELTEESTCSILEHMGNDGRQSYNTKYYNLDAILSVGYRVNSKNATRFRQWASSVLKQYLVKGYAINENIRKHQIAELRQLIQVLGRAIQQQPAKTTDESNALFDVVVDYTYALDTLDNYDYQRLHIAKTTKEEPFHATYENAMHEIDMLRQKFGGSVLFGNEKDDSFKSSIGQIYQTFDGTELYPSVEEKAAMLLYLVTKNHSFSDGNKRIAATLFLWFMNNNAILYHPDGTKRIADNTLVALTLMIAESKTEEKDVMVKVVVNLINQAN
>NC_015311.1|WP_004361059.1|521263_521488_+|DUF3791-domain-containing-protein
MSREETNQIRYIVALIAEFAKKFNLGQRQAYNYLKRFKGIDYLMSFYDVLHTQSFEDAIHDISIICQRNGGALK
>NC_015311.1|WP_013670680.1|521496_521976_+|DUF3990-domain-containing-protein
MILYHGSNIDIDKIDLTKSKPYKDFGKGFYLSADKQQAQRMAEQRTSILLEGKPTLNKYQFDETTLDCDSLRILRFEEYSKEWAEFVLKNRDTNTEQPCHNFDIVYGPIADDGVTFQLRRYKTGMINLEQLVNELKYSKGITFQYYFGTELAISKLRKL
>NC_015311.1|WP_025067892.1|521972_522215_+|hypothetical-protein
MKLTDEQIDMMKEDVCAELIALLMKDRQCTMSEAIDMLYNSDTYSRIQDQSTGLYYQSPGYSYAFLQQELLTGDYRREMF
>NC_015311.1|WP_013670682.1|522407_523238_+|DUF4595-domain-containing-protein
MKKTITIALLTAAAIGATSFFSSCSNKNDDDYWIIDRRPDPVTIDLSKVFTNGTPKEVDSMTIQTDERGLVTSIKTKDEMVSFKYINTKTRAIVIPNVFMKVERNGKATVYIMYLNNNGFVRRCMIEQKENTKEDTWRFTYNDNEQLINIIHSADNYKELTLTYKDSNISEIETKTIVSQTTTRKKDTYKVAYTSDTTPAPIVNKGNIMLFNTTFGIDIGAMKYAYYAGLLGKATKNLPVQLIDKSGNKTNFTWTFNSNGFPTAMTSGSHQYKFEW
>NC_015311.1|WP_013670683.1|523702_524299_+|DNA-binding-protein
MTVNYKLLRTSGKLAQRKTLRIVPIKKDVTGIERICQHIQQATTLTTADILGTIAALKTELVEELKSGNTVHLPGIGFFSLALKGDMYEDPKTHRHHLRNVAVRKIRFGPDKDFHEALGEMEFENKTYKDGTPSLPMRPTVNAALKELFDESPIITVNGLRRRLNLSTTYAYQLAAQLEREKKIINIGSRYRKIYRKA
>NC_015311.1|WP_013670684.1|524531_527090_-|alpha-glucan-family-phosphorylase
MKIKSDYSNEPQWKEVTVKSTLPKELACLDEIAHNMWWAWNYEARNMFKALDEVLYEEVGHNPVQLLDRLSYDRKEAIVKDKKLMKQVGDVYKKFRSYMDVKPDSKRASVAYFCMEFGLNQTLKIYSGGLGMLAGDYLKEASDSNVDLCAVGFLYRFGYFTQSLSMDGQQIAKYDAQNFNSLPIERELDENGNQVVVDVPYRNYQVHALVWRVNVGRIKLYLLDTDNDMNSEFDRPITHSLYGGDWENRLKQEILLGIGGMLTLKKLGIKKDIYHCNEGHAALCNLQRLCDYIDGGLTFNQAMELVRVSSLYTVHTPVPAGHDYFDEALFGKYMGDYPAKLGISWDEFIGMGRTNPDDHSERFCMSTFACNTCQEINGVSKLHGWVSQKMFAPLWKGYFPEENAVGYVTNGVHLPTWTATEWRKVYDKYFDKSFMGDQSNEQIWHAIYNVPDAEIWETRMALKQKLIKYIRDKFTRQWLRNQGDPAKVVSILEKINPNALMIGFCRRFATYKRAHLLFTDLDRLEKIVNNPEHPVLFFFSGKAHPADGAGQGLIKRIFEISRMPQFLGKIIFLEDYDMQLARRLVSGVDIWMNTPTRPLEASGTSGEKAEMNGVVNLSVLDGWWVEGYREGAGWALPEKRTYQNQGYQDQLDAATIYSLLENEIVPLYFNKDKNKGYSEGWVKVVKNSIATIAPHYTMKRQLDDYYDKFYESQAKRAHKLEAHDNKLAKEIALWKESVAERWDSIYVVSKNEEELQDIATGHKVKVTYTIDEQGLNDAIGLELVFLKNAPVDDVNIHKVIPFKLVKTEGNHYTFEASFEASEAGAYKCDVRMFPKNSLLPHRQDFAYVKWIG
>NC_015311.1|WP_013670685.1|527142_528789_-|glycosyltransferase
MLFPDYIFETSWEVCNKVGGIYTVLSTRAKTLQDKMKDHVIFLGPDCWQDTPSPYFKEDKTLFADWQQKAASEGLSVKVGRWDIPGEPIAMLVGFQSFFEKKSELFGKLWEYYRVDSLHAYGDYDESAMFAYATALVVESFYKFYLSEKDKVVFHSNEWQTGFAALVLQHRQPQIASIFTTHATCIGRSIAGNNKPLYEYLWVYNGDQMASELNMESKHSIEKQTAHHVDCFTTVSDITATECKELLDKPVDVVLPNGFENDFVPKGATFTKKRKAARRRLLDVANALTGDDIQEDALIVSTSGRYEFRNKGIDVFIEAMNRLRFDESLQKQVVSFIEVPGWTAGPRQELAERLDSGRQFDTPLDMPVLTHWLHNMDDDNVLNRLRTLGMNNAKDDRVKLVFVPCYLTGDDGILNMSYYDLVLGNDLCVYPSYYEPWGYTPLEAVAFKVPCITTDLAGFGLWANTEKGAYSEIEDGVKVLHRTDYNYSEVADGIRETVARYSSLTKTEVNKCRSHAEKLSHKALWSKFIKYYERAYDIALEKAAERNS
>NC_015311.1|WP_013670686.1|528935_529421_+|hypothetical-protein
MKQKIILTIMAMLAFSANIIAQNNLPDTKKETSSSKSGKTVQSNDSIFKAHLVNDEYQVWMDIDFYHNNITVPRQEIFGEVPGYFGAVRDTRKWIISDAAIKGKKALLTIINDYGSEDLTAELKRNSDGTYTLTRLAGSTMKIVVNNKWVKIPKDITFYVK

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Crispr_ID: NC_015311_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_4

583762-583862

Orphan

Consensus_repeat	Method
GCGATGCGGTAGGCGATGATAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_4

>merge|NC_015311|4|583762-583862|CRISPRCasFinder
AAGTTGTGATGGACGATGATAGGCGATGCGGTAGGCGATGATAGGTGGTGAACAGTAGGCGATGATAAATGGTGATAAGCGATGCGGTAGACGATGATAGG

>NC_015311|4|3|583762-583862|CRISPRCasFinder
AAGTTGTGATGGACGATGATAGG	CGATGCGGTAGGCGATGATAGGTGGTGAACAGTAGGCGATGATAAATGGTGATAA
GCGATGCGGTAGACGATGATAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013670709.1\|574181_574949_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_015311.1\|WP_155813227.1\|576883_577318_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377526
NC_015311.1\|WP_013670710.1\|574953_575664_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_015311.1\|WP_004354005.1\|572124_572445_-\|heavy-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179490
NC_015311.1\|WP_013670720.1\|585239_586754_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|274109
NC_015311.1\|WP_013670723.1\|589245_589662_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NC_015311.1\|WP_013670711.1\|575660_576848_-\|nitrous-oxide-reductase-family-maturation-protein-NosD	unknown	unknown	gnl\|CDD\|275079
NC_015311.1\|WP_013670724.1\|589663_590281_+\|TrmH-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349970
NC_015311.1\|WP_013670722.1\|587856_589101_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_015311.1\|WP_013670718.1\|581825_583751_-\|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|179361
NC_015311.1\|WP_013670725.1\|590500_592504_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293739
NC_015311.1\|WP_013670721.1\|586800_587448_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670708.1\|572601_574089_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_015311.1\|WP_013670716.1\|580407_581274_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NC_015311.1\|WP_013670726.1\|592510_593767_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NC_015311.1\|WP_013670713.1\|577382_578078_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670719.1\|584517_585135_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013670714.1\|578102_580151_-\|Sec-dependent-nitrous-oxide-reductase	unknown	unknown	gnl\|CDD\|275078
NC_015311.1\|WP_013670727.1\|593769_594642_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_015311.1\|WP_004354089.1\|583983_584490_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013670709.1\|574181_574949_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.00163612
NC_015311.1\|WP_155813227.1\|576883_577318_-\|hypothetical-protein	gnl\|CDD\|377526	pfam05573, NosL, NosL. NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallo-centre assembly.	1.44664e-09
NC_015311.1\|WP_013670710.1\|574953_575664_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.8606e-73
NC_015311.1\|WP_004354005.1\|572124_572445_-\|heavy-metal-binding-domain-containing-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	2.79071e-52
NC_015311.1\|WP_013670720.1\|585239_586754_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|274109	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., ). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations [Transcription, Transcription factors].	1.34471e-109
NC_015311.1\|WP_013670723.1\|589245_589662_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	2.67945e-68
NC_015311.1\|WP_013670711.1\|575660_576848_-\|nitrous-oxide-reductase-family-maturation-protein-NosD	gnl\|CDD\|275079	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase.	1.59194e-125
NC_015311.1\|WP_013670724.1\|589663_590281_+\|TrmH-family-RNA-methyltransferase	gnl\|CDD\|349970	cd18097, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.6378e-63
NC_015311.1\|WP_013670722.1\|587856_589101_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	2.62181e-90
NC_015311.1\|WP_013670718.1\|581825_583751_-\|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	gnl\|CDD\|179361	PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional.	0
NC_015311.1\|WP_013670725.1\|590500_592504_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	5.50434e-49
NC_015311.1\|WP_013670708.1\|572601_574089_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_015311.1\|WP_013670716.1\|580407_581274_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	1.29323e-19
NC_015311.1\|WP_013670726.1\|592510_593767_-\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	5.72682e-66
NC_015311.1\|WP_013670714.1\|578102_580151_-\|Sec-dependent-nitrous-oxide-reductase	gnl\|CDD\|275078	TIGR04246, nitrous_NosZ_Gp, nitrous-oxide reductase, Sec-dependent. This model represents the nitrous-oxide reductase protein NosZ as characterized in Geobacillus thermodenitrificans. In contrast to the related form in Pseudomonas stutzeri, this version lacks a recognizable twin-arginine translocation (TAT) signal at the N-terminus. Consequently, its accessory protein may differ. Some members of this family have an additional cytochrome c-like domain at the C-terminus.	0
NC_015311.1\|WP_013670727.1\|593769_594642_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.23442e-62
NC_015311.1\|WP_004354089.1\|583983_584490_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	2.09681e-78

>NC_015311.1|WP_013670718.1|581825_583751_-|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase
MIDLFNFERRKTSVTHVGTLDIGGENPVRIQSMTTTSTDDTEGSVAQAERIIDAGGELVRLTTQGKREAENLKNINAQLRADGYMTPLCADVHFNANVADVAALYAEKVRINPGNYVDPARTFKKLEYTDEEYARELQKIEDRLVPFINICKENHTAVRIGVNHGSLSDRIRNRYGDTPAGIVESCMEFLRIFRRHDFHDIVISIKSSNTVVMVRSVRLLVAEMDKEGMHYPLHLGVTEAGEGEDGRIKSAVGIGALLADGIGDTIRVSLSEEPECEIPVARYLAWYIRRHEKHLLIPGERYSGFDYLRPERRETVAAGNIGGGNVPVVIATRKAGQAAVDVSSPELPKPDYIYVQGRLPENKVKNQKYILDYDAYMELAHGGRQSLENVYPIFPVTGMPFISAIDTEVKFLVLKFGTPSEEFLACLKAHPEVVVVCMTSHQNRLGDQRALAHQLMIAGVKNPIVFAQMYRHSTPAAEEEPLASQSTAPITPKEQFQLEAAADMGALMMDGLTDGVWLMTDGNLSQDDIEQTAFAILQAGRLRMVKTEYISCPGCGRTLYDLRTTIARIKEATKGMTGLKVGIMGCIVNGPGEMADADYGYVGAGPKKVSLYRRQVCVEHNIPEEEAVDHLLALIKADREK
>NC_015311.1|WP_013670716.1|580407_581274_+|LytTR-family-transcriptional-regulator
MQADNNPLRKIMSRLSSFLRSRCTLQGNATSWRTSVASGGGIFLFLYLLQPFGISQYRGSIFLMCLGFGVLTACVLWLGSVLFFKTLSYRKIAVTNGHQILYSIGIELAMAVSMTVYAAFFFHIPLTGRLFWVFFYWTFLVWVIVTGIFTLINYNRMLNGRLEELIRKTADEQAGIVITLHDQNLRGADLTLPINDLLYIESRKNNVCVCYRNEGKTVKTELRSTLAALKAALPYDNIFQCHRSFLVNINNISSAKGNSNGYQLRLSGCDDTVPVSRTFVPGLRRFVG
>NC_015311.1|WP_013670714.1|578102_580151_-|Sec-dependent-nitrous-oxide-reductase
MIFIMKKSILFSLASLIAFGGVLHSCKPKKTGQIAVDDDAAKQVYVAPGHYDEYYDFVSGGFSGQVAVYGIPSGRLLKVIPVFSQNGENGYGYDENTKPMLNTSFGFVPWDDSHHTQLSETDAMYDGRWLFINANNTPRIARIDLKSFRTAEIIELPNTSGNHASPFITCNTEYIVAGTRFSVPADYENGDVPIKDYKEKFRGHISYIKVDKNTGGLSLDFQLALPPFNYDLSHSGKNASADWSFFTCYNTEEAHSLLEVNASHNDKDYILAINWKKAAEHAAKGDFDWKPCKYAHNVMHEDTEQATSEILNKVKVIDTRKYNDFLYLIPCPKSPHGVDVDPSGEYIVGNGKLSANLPVFSFTKIQDAIKNHQFDGKVDGINVIKYESALHGEVQSPGLGSLHTEFDADGNAYTSFFISSEIVKWRLKDCQIEDRIPTYYSIGHLSVLGADTKKPYGKYMVAYNKITKDCFLPTGPELCQAAQLYDISGKKMRLILEFPTIGEPHYASAIAADMLKPNMMYFTRLADNHNPYKISTAQQARVERHGNRVDIYMAAIRSRLVPDNIEGIRLGDEVYFHVTNIEQEWDIPHGFTVKGNNNAEILVMPGETCTLKWIPNRVGILPFYCTDFCSALHQEMQGYARVSPKGSNTPLSFTIDDKLPSQFAATKPTTQSAAAPTTHKRK
>NC_015311.1|WP_013670713.1|577382_578078_-|hypothetical-protein
MTCPHRLYKDRMSGGHERRVLKSVKNMKLSFSGKITKSSMILLIVAALFTAVSAFTSVWRIDLSAPQYPEGMVLYIGGTEGVSGGDDGNDLYKINELNHYVGMAQIHPGDFWEFTVLPILLCAFAVLFLVAAIMKSKKLSIASLISFGIFGILGFVDFYHWTYVYGHNLSPDAPIKVPGMAYQPPIIGEKQLLNFDALSQPDLGGYLLVAAGLLLAFVVIKEMGVFGNKKN
>NC_015311.1|WP_155813227.1|576883_577318_-|hypothetical-protein
MLMLTLVSLVACTHDNRPQPIRLGKEDCAGCGMTIEVPRFACEFITDKGKCFKFDDLSCLFHYMNAKNLSDSTVEKIYVADYEHPDSLIDIKLAGLVLGQDIKSPMNGGVAAFRNRAHAHKFAVKTRSILLDSWERLKIQHAEH
>NC_015311.1|WP_013670711.1|575660_576848_-|nitrous-oxide-reductase-family-maturation-protein-NosD
MSARTIEVGKGKAFVSISKALRTAKPHDVILVYGNKVYKEHLLIDKPVLLRGTGHPVVDGGQRGNVVSIKADNAVVEGLQIQNSGRSSQIDYSGLHAENVQNVTVRNCVFRANQFSVMFQNCRHCTVAGNDISSNITLNPIMGNAVHCWKCDHMHITGNKIGHNRDGIYLEFVNSSHIDRNTVNGCERYGLHFMFSHFNVYSSNHFSHNQAGVAVMFAHNVTMLNNIFEFNRGTSSYGLLIKELQYSTIKGNSFRNNTVGLLVDGGSDLLVHHNEIKANGWGMRLISASTNDTITCNNFLGNTFDMTTNVSYNRNTVNGNYWDKYEGYDLDKNGYGDVPFHPLSLFSMLAEQNENVLFFFHSFLMNLLDATEKVLPSVTPDNYVDEYPHMKSYKI
>NC_015311.1|WP_013670710.1|574953_575664_-|ABC-transporter-ATP-binding-protein
MITIKNLNKFYGRQHVLHDINLQLEQGQCIGFVGPNGCGKTTLMKCILGLVTPQSGEVLVDGMNVQENPSYRRHIGFMPQNSCFPENMSVGETFRTIRDVRKDSDNLDKELYDAFEIEAIASKKTKTLSGGTSQKVNAALAFLFNPDILILDEPTASLDPIAASILKDKIVREKNKLVFITSHILSELEGIATHIIFMEEGHILFFKPVEQLLRETCQDNVSQAVMYYLKKSGKHQ
>NC_015311.1|WP_013670709.1|574181_574949_-|ABC-transporter-permease-subunit
MGKITKIIFMDNVKSRVVVFYFVLLALLSWTSLLLQDNESKGALTILNIILFVTPLMSLLYTVTYLYDAHDFLVLLLSQPVERRRIWQSLYTGVSSSLLIAFLLGAGIPMLLYTDWGTGLVLLLMGCVTTQIFVSLAFLTTMLASDKTRGTGISILIWLLFTMIYDAVLLYALFLLSDWPVETPLLALLMLNPLDLTRFQVILKMDVSAMMGYGGAAFKEFLGAAGGIVVSSLLLLLWIIVPYFLSLRIFRKKDL
>NC_015311.1|WP_013670708.1|572601_574089_+|cysteine--tRNA-ligase
MQDLVIYNTLHRKKELFQPIAAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLRHIGYKVRYVRNITDVGHLEHDADEGDDKIEKKARLEQLEPMEIAQHYTNRYHDAMRALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVEKYDKDHHYGILSGRNLTDMINNSRELAGVGEKHNQADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRKYLGEHFDIHGGGMDLIFPHHECEIAQAVASQGDQMVKYWMHNNMITINGQKMGKSLGNFITLEQFFTGRHETLMQPYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLMNGIEDLARIQASAASDGNTGKFVSAFRKKCYEAMNDDLMTPAVISELFEACHLVNILIDHKAQISADDLKELTEAMHLFAFDILGLKNERSADNDAREEAYGKVVDMVLDLRAKAKAEKNWAVSDQIRDALSAAGFQVKDTKDGVTWKLDR
>NC_015311.1|WP_004354005.1|572124_572445_-|heavy-metal-binding-domain-containing-protein
MIITTTPTIEGHPIQAYKGLVTGETIIGANVFKDFLAGIRDFIGGRSGAYEKVLREAKDTSLQEMMQRAEELGANAIVGIDLDYETVGQGSSMLMVTCSGTAVRIE
>NC_015311.1|WP_004354089.1|583983_584490_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MKPLVSIIMGSTSDLPVMEKACKWLEQQEIPFEVNALSAHRTPDAVETFAKEAKGRGIKVIIAGAGMAAALPGVIAASTPLPVIGVPIKGMLDGLDAMLSIIQMPPGIPVATVGVNGAQNAAILAAEMMAIGDEAIACKVDAWKASLGEKIEKANRELAELKDYRFKC
>NC_015311.1|WP_013670719.1|584517_585135_-|hypothetical-protein
MKEKNIILTARIVSMVLTPFYLPVVGILAIFIFSYLSMFPWQAKLAYVLMVYAFTVLIPTLLIHLYRQYHGWTLIQLGQRERRMVPYAISIICYFTCFYIMNLLHLPHMLTSILMAALVIQILCAVINVWWKISTHTAAIGGVTGSLIAFSLLLSFDPMWWLCLTLVVSGMVGSSRMILRQHSLEQVTSGFFLGLVCSFLTVIIV
>NC_015311.1|WP_013670720.1|585239_586754_-|RNA-polymerase-factor-sigma-54
MAQEQVQIQTQKQQQVQRLSQQQMLQVKLLEMPLTELEECVNAELDDNPALERGGEETDDIDTGDAAEQTEDDDFDTQQEREERQDALDSALERMKSDDDIPTYDSRQQRNNADYEEIVYGDTTSFIDKLNEQVGERELTGRQRDILEYLIGSLDNDGLLRKDLGSISDELAIYHGIDAAVGELEEVLKILQDFDPPGIGARTLQECLLLQVDRKAENGEWDRDGQLYRCIRTILSDYFDAFTKKHWDKIQSALLLSDRQVETLQREIRKLNPKPGASMGETQGRNLQQITPDFIIDTEDDGTITFSLNHGNLPELHVSTAFSEMLAAYRDNKAGMNRQEKEALLYAKEKVDKAQGFIEAVKQRRHTLQVTMKAIIDIQRRFFQDGDEADLKPMILKDIADRTGLDISTISRVSNIKYAQTRWGIFPLRFFFSDSYTTEDGEEMSTRKIKVALKEVIGQEDKRRPLSDDALAKVMKEKGFPIARRTVAKYREQLGLPVARLRKE
>NC_015311.1|WP_013670721.1|586800_587448_-|hypothetical-protein
MATHPLWSDDYWLLLLQLYLKKPEGMKPMYSRALVGLSLELHIPPRILYGQLFRLRQRATPVLNLIWETYGENTRRLNRDVKKLRSMKGFGQPREFYDGVKVRETFEHDFLPLDGSPELKPFMLVMILDLYFRLTPITMVAETPEVADLARLMKIKPQTVVGVMDAFQTCDPYLHRNELTASPLLQPCQEVWNRYGNDNPEKLSALAAQLREYFT
>NC_015311.1|WP_013670722.1|587856_589101_+|U32-family-peptidase
MDKNSNEFEIMAPVGSRESLAAAIHAGADSVYFGIGRLNMRSHSANHFTIDDLKEIAGTCKAQGIKTYLTVNTVIYGEDIETMHEIVDAARAAGITAVIASDVAVMMYCRQAGVEVHLSTQLNISNIDALKFYAQFADVAVLARELNMDQVKEIHRQILEQNICGPKGQPVRIEMFCHGAFCMAISGKCYMSLHDANRSANRGECVQICRRSYTVTDNETGNQLEIDNKYIMSPKDLKTVRFIDRMMDAGVRVFKIEGRARGPEYVHTVVTCYREAIESVLDGTFTEEKKDLWDKRLSTVFNRGFWDGYYQGQKMGEWTKEYGNKATEKKVLIGKVMKYFSRLGVAEIAVEANTFSKGDKLLITGNTTGAMFLNADEIRYDLRPVDAAEQGWRVSIPVPGKVRPNDKLFKLVKS
>NC_015311.1|WP_013670723.1|589245_589662_+|SufE-family-protein
MTINEAQDAVIEEFEDFTDWMDKYQMLIDLGNELEPLDEKYKNEQNLIDGCQSRVWLQCDNVDGKLVFTADSDALITKGIIALLIRVLSRHTPQEILDADLYFIDRIGLRQHLSPTRSNGLLSMVKRIKAYALVFSLK
>NC_015311.1|WP_013670724.1|589663_590281_+|TrmH-family-RNA-methyltransferase
MRKLRTVEMDRLSVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDCPAADTSHPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRLLLE
>NC_015311.1|WP_013670725.1|590500_592504_-|alkaline-phosphatase-family-protein
MFHNLKYLFRHAVLLLVVLLFMRSCFAVAFVPLEVVGSHLSVLPHLLFNVLRFDVQVVCYVLLLPTVLTLVFAVLRKSWADRVLSRFRSIYFSIVSAFILVISGIDLGFYANFNSHINLTFFDFFNEGPLSLLQTIWEEYHCVYETIAFLIVLLPVLWCIRRIERGSVSAGRSAVLSASPAPSAGRSVRRHVCLSAVLLLYIAFLVIGLRGSVWRFPLQIEDTFVSDQKTLNDLVPNAVYMLKKAYKEKKDAFRMENTADLLQQFRFKSLQEALDVYTDGKVKMERNDTLAALQHALFAEADDTMRLPQPNVVIIYSESWSNYLFHLQRKDSEMYFHLRRHFHDDLLFRNFQSVQNGTVASLENLYVSTPYPRFFASAYRFRLLPTSIALPFKASRYTTMFMSGMDAAWENCAEALVHQHFDAVYDKFHILKDYPRATYNSIGVYDEYLFQALLGQLEKPSAKRRMIAVMTTTNHPPFEFPRNLKLPPLPESVYHDKCFAEHNRKVLDKYLTGFRYYNKVLGEFLDRFKASAAAKNTILVITGDHNVRSILDYDVVDRRYEHSVPLYLYLPPYLRKAAYRRLTGRWGSHDDIVPTLAPFAFRHTKYFKMGRNLLDTSAPDSIYFSANVEQLEAAPAYRRQAERRTDARNLLRLVYFGKVLKRAGKGD
>NC_015311.1|WP_013670726.1|592510_593767_-|glycosyltransferase
MVTINPQPSTPDTPLRIVFLMSRFLDGGIDTVLIEYLKHLSESEDVEITLAIATAMDSLEVFRREVPANVKIVYFSQSRRLTHIQQGRVLKMTSHLAKVYDEMVNNPIRRYRAQRGIDRLAKTADLFIDFDCCAYSFLRSVRTKKIAYFHFSFVQAMRQNGRRMKRIGRELEHYDRVVTISKAMREEGCRLFPSLKDKMTVIYNAKNPGIIRRKAAVTTGDDRIDRPYLLAVERLEESQKDLTTLLEAYALLRKTFHREEWLYIIGKGSSEEGLKQKARALGIADRTVFLGFCANPYPWMLRSRLLVHSAKFEGLPTVLIEGLLLDKLMVATDCPTGPREILDDGRAGLLVPVGDAAAFASATDRLLNDTQLQADILQGVRDRAADFTFQAVDSKLRELMGVRLSTDGNGRSSTTFNR
>NC_015311.1|WP_013670727.1|593769_594642_-|glycosyltransferase-family-2-protein
MFHAFFIRLFCGDNEYFIIFAAMNDAQRISVIINTYNAERHLEAVIEAVKDFDEIVVCDMESTDRTLDIARSYGCKVVTFPKGDLRIVEPARQFAIDKAGSPWVLVVDADEIVTPALRKYLYAAIRKADCPDAIAIPRKNYFMGRMMHSSYPDYIVRFLRRSKCSWPPVIHASPKVDGNIWKIPASRTDLAFEHLANDSVADIIRKNNTYSDYEVPRRRQKKYGCMALVYRPVFRFFKSYFLKRGCLDGVPGLIHAVLDAGYQFYIVAKLREERQCDPMSVNTRTPAPDI

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Crispr_ID: NC_015311_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_5

1697098-1697191

Orphan

Consensus_repeat	Method
TTTGCATAAAATAAGCTGCACTCGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_5

>merge|NC_015311|5|1697098-1697191|CRISPRCasFinder
TTTGCATAAAATAAGCTGCACTCGACAAACAGAGAGCAAGCTCTCTTTTGTCCTCGTTTGCATTATTTTTGCATAAAATAAGCTGCACTCGACA

>NC_015311|5|4|1697098-1697191|CRISPRCasFinder
TTTGCATAAAATAAGCTGCACTCGACA	AACAGAGAGCAAGCTCTCTTTTGTCCTCGTTTGCATTATT
TTTGCATAAAATAAGCTGCACTCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013671438.1\|1706179_1707439_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NC_015311.1\|WP_004354228.1\|1698203_1699109_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_015311.1\|WP_044112400.1\|1692780_1694325_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_015311.1\|WP_004354255.1\|1701982_1702351_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_004354265.1\|1690621_1691233_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_015311.1\|WP_013671421.1\|1687572_1688880_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013671423.1\|1689599_1690556_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225107
NC_015311.1\|WP_044112396.1\|1688998_1689346_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_004354175.1\|1694614_1695496_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_015311.1\|WP_044112402.1\|1699933_1701043_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|376510
NC_015311.1\|WP_013671436.1\|1705051_1705540_+\|flavodoxin-FldA	unknown	unknown	gnl\|CDD\|236439
NC_015311.1\|WP_013671437.1\|1705585_1705954_+\|DUF2023-family-protein	unknown	unknown	gnl\|CDD\|378227
NC_015311.1\|WP_013671431.1\|1697258_1698035_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NC_015311.1\|WP_013671429.1\|1695476_1696400_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015311.1\|WP_013671419.1\|1684400_1686170_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368963
NC_015311.1\|WP_013671435.1\|1702832_1704923_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173804
NC_015311.1\|WP_013671434.1\|1701064_1701649_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NC_015311.1\|WP_013671432.1\|1699131_1699683_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238493
NC_015311.1\|WP_044112394.1\|1686271_1687525_-\|imelysin	unknown	unknown	gnl\|CDD\|271141
NC_015311.1\|WP_013671427.1\|1691945_1692752_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013671438.1\|1706179_1707439_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NC_015311.1\|WP_004354228.1\|1698203_1699109_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	6.23295e-176
NC_015311.1\|WP_044112400.1\|1692780_1694325_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_015311.1\|WP_004354265.1\|1690621_1691233_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.01289e-23
NC_015311.1\|WP_013671423.1\|1689599_1690556_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.62084e-17
NC_015311.1\|WP_004354175.1\|1694614_1695496_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.2806e-12
NC_015311.1\|WP_044112402.1\|1699933_1701043_-\|chorismate-synthase	gnl\|CDD\|376510	pfam01264, Chorismate_synt, Chorismate synthase.	0
NC_015311.1\|WP_013671436.1\|1705051_1705540_+\|flavodoxin-FldA	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	4.07564e-74
NC_015311.1\|WP_013671437.1\|1705585_1705954_+\|DUF2023-family-protein	gnl\|CDD\|378227	pfam09633, DUF2023, Protein of unknown function (DUF2023). This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. It is expressed in bacteria.	2.70905e-65
NC_015311.1\|WP_013671431.1\|1697258_1698035_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	2.13617e-100
NC_015311.1\|WP_013671429.1\|1695476_1696400_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.87814e-17
NC_015311.1\|WP_013671419.1\|1684400_1686170_-\|hypothetical-protein	gnl\|CDD\|368963	pfam06537, DHOR, Di-haem oxidoreductase, putative peroxidase. DHOR is a family of di-haem oxidoredictases. It carries the two characteristic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.	1.1939e-27
NC_015311.1\|WP_013671435.1\|1702832_1704923_+\|S8-family-serine-peptidase	gnl\|CDD\|173804	cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.92746e-28
NC_015311.1\|WP_013671434.1\|1701064_1701649_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	9.17947e-20
NC_015311.1\|WP_013671432.1\|1699131_1699683_+\|isochorismatase-family-protein	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	7.4692e-34
NC_015311.1\|WP_044112394.1\|1686271_1687525_-\|imelysin	gnl\|CDD\|271141	cd14658, Imelysin-like_IrpA, Imelysin-like domain in iron-regulated protein A. This family includes putative iron-regulated protein A (IrpA) mainly from Bacteriodes, proteobacteria and cyanobacteria, with domain similar to insulin-cleaving membrane protease (imelysin, ICMP) protein. It has been shown to be essential for growth under iron-deficient conditions in the cyanobacteria Synechococcus sp. The conserved GxHxxE motif is similar to other known imelysin-like proteins that are regulated by iron, such as ICMP, IrpA and EfeO. Imelysin is a membrane protein with the active site outside the cell envelope. The tertiary structure shows a fold consisting of two domains, each of which consists of a bundle of four helices that are similar to each other, implying an ancient gene duplication and fusion event.	1.30627e-84
NC_015311.1\|WP_013671427.1\|1691945_1692752_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	9.00034e-63

>NC_015311.1|WP_013671429.1|1695476_1696400_-|EamA-family-transporter
MDHSSTIKGYGYATLSAITFGTIPLFSIPVMEAGMSLPSVLIYRFAFGCLSMMAVLLWRRQTLHIRWGDGLRIMFLSLLYAVSAVCLFSSYEYMPGGVATTLLFSYPVWTEILLILFFHEKITLRITLAVFLAIAGVFFLGGIGQTDGIKSVWGIVLAMSSGLLYAIYMVIFPHMRIRKLPALKLNFYIFFMAMLLLVLYASFTAGGVQRIPDGASFLSLILLGLVPTTVSNVTLVRSLTLIDSASVAILGAFEPLTAMAIGITLMGEPLTTAIVIGFMLIIASVLILITKGKTSPNPLRKYASHKE
>NC_015311.1|WP_004354175.1|1694614_1695496_-|DMT-family-transporter
MPVIKNNIILWHLLAAVIVGVWGTTFVNTKVLYNSGLTPLEIFFLRFLIAYICIWFISPRRLFSRTWHDELIMLLLGVMGGSVFFLAENYAVGLTYVNNVSFIVCTAPLMTVILGIAFVRSIKARWPLIIGSLVALAGVAIVIFNGSLVLHLNPWGDLLALLASVCWAVYSLLMRKVSHAYSAVFITRKIFFYGLVTVLPAFFFDPWTAAPSMLLMPKVVLNLLFLGLVASFLCFVLWTLVIGKIGAMTSSNYLYLNPVTTVVASAVFLSEPMTAIAYVGSALILAGVAVANK
>NC_015311.1|WP_044112400.1|1692780_1694325_+|glutamine-hydrolyzing-GMP-synthase
MQQKIIILDFGSQTTQLIGRRVRELDTFCEILPYNKFPKDDPSVIGVILSGSPYSVHDPEAFKTDLSQFIGRIPVLGICYGAQFLSYSNGGKVEQTGTREYGRANLETISLDNRLFAGFEKGSQVWMSHGDTITAIPADYEAIASTGDVKYAAFASKTQPVWAVQFHPEVYHTLQGKQLLKNFVVDICGSRQEWSAASFIESTVQELRGQVGNDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIFVDHGMLRKNEFAKVMKAYKGLGLNVTGVDASEKFFKDLEGVTDPEQKRKIIGRDFVEVFNAEARKITDAKWLAQGTIYPDRIESLSITGMVIKSHHNVGGLPDEMRLRLCEPLRWLFKDEVRRVGHQLEMPERLIKRHPFPGPGLAVRILGDITREKVRILQDADDIYIEKMHDYTMPDGTSLYDHVWQAGTVLLSTIRSVGVMGDERTYEHPVALRAVTSMDAMTADWAHLPYDFMADVSNEIIRKVKGVNRVCYDISSKPPSTIEWE
>NC_015311.1|WP_013671427.1|1691945_1692752_+|nucleotidyltransferase-family-protein
MQAMIFAAGLGTRLKPLTDTMPKALVRVGDTPLLEHVIRRLTEAGCNRMVVNVHHFADQIKSYLKTHDYSVEIHVSDESEQLLDTGGGIKRAASLFDGHWPVLIHNVDILSNVDLAAFYRHALEKKADALLLVSRRVTQRYLVFDKNLRLAGWTNTATGEVKSPHADIRRLHFVSPSEDVASYHQNNCYLYAFSGIHVVAPSALQAIEAVGKDKFPIMDFYISNCARLDIRGELKNDLHLVDVGKLNTLQTAEDFIANSGRQVSSPED
>NC_015311.1|WP_004354265.1|1690621_1691233_+|response-regulator-transcription-factor
MENTEIKKERPRMAIVDPNTLAVLGLKQILQNVMPIMTVETFSTFQDFEDAHPESFYHYFVAQVIVLENRQFFSQCIHKTIVLTITKDPNAQLSGFHSFCINVPEDELVRAILKIEQYGHSGGRNLPELPQVLKNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGYIDINKI
>NC_015311.1|WP_013671423.1|1689599_1690556_+|helix-turn-helix-transcriptional-regulator
MKNQKMYEPEDKMINLIKDNYDLLQSLGCFGISLGFGDKTVREVCDEQNVDTYTFLSVVNFTINGYKGFDDMDRLSIPTLMQYLQASHTYYLDFELPSIRKELTAALDETDNLARLILRLFDEYAHDIRNHMKYEEKMVFPYVEAMLKGEASDAYDIETYSKHHSQTDLKLRELKSIIIKYLPSDAHHNNRLTATLYDIYNCEGWLTLHAEVEEEIFIPVIRRLEQKTQQKDVSLKITNMITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNLVDISSVKL
>NC_015311.1|WP_044112396.1|1688998_1689346_-|hypothetical-protein
MESALGERQGKFYDVVLCHIIISCITMILFTYIHVLVSSWSTWFSKPHTMEAHRPVWYDCSRLLGNRIPKYLGTAFPALGTGSPDHCVSAYALLFRAAYILQYLPKIPKYNDKKD
>NC_015311.1|WP_013671421.1|1687572_1688880_-|hypothetical-protein
MDNFTLGVILGAALLAGTTRTQAQVNASDSVMNHAKGNKLSVGGYGEVAYSRNFYSDHVSRYTLADEHRNDPSHGRFDIPHAVVYLGYDFGKGWTMGTEIEFEHAGTGVSYEKENEEGGEWEQETEKGGEVELEQFWLQKSFWGGKFNIRAGHIVVPVGLNNTHHEPLNFFTVYRPEGENTILPSTWHQTGISFWGKLKDWRYEAQILAGLNADHFTHDYWIHKGASSPLEFDVANKYALALRIDNYSVKGLRLGLSGYCGNSIGNTYPNDAAGASQKYKGTVLIGSFDFSYNAHNWIVRGQADYGYLGDAAQLKYFSNRRNKLSPYHHTPSVSKNAFSYGIEAGYDVFSQIQKLRDDHQKLYVFGRFEQYNPYASKTNNENYDYTAKKNVSFGINYYPLPQIVVKADYSCRILKSQYNNEPSINIGIAYAGFFL
>NC_015311.1|WP_044112394.1|1686271_1687525_-|imelysin
MKMIRKSALLFAVAGTLSLGFTACSSNDDPGISEEDYTNKQFGNEAMAACTDLTTALTEANQAIVSSQLSAEQKKELQNILNANVDNVIYPTYKELGDDVEALHAALGTLSEKQISQKNVDDACAAFLKAREQWEKSEAFLMGPASDFSIDPHIDSWPLNRTALHAYFGNPTAEIKDESILGFHALEFILFRNGKPRKVAEFQGNDTYPNFTDIKGSDELKYAEAVIKDLLNHVYELEVAWNPTNATRLAAVKAANLKYQTEKGFSYGENMRSAGDAAKSTFASIDVAVTQVLSETEGSCLGIANEVGTAKISNPFQAGDISYVESPYSYNSITDFQNNIRSIENIWYGGRNGKNSNAAYSFHKFFQSNKTAVGRKVEAAIETAIQKIGRMPKPFVKYVSKVWNKKFEDDNDFDVKE
>NC_015311.1|WP_013671419.1|1684400_1686170_-|hypothetical-protein
MKRNNGWVLAALAMMPLLNTACSDDTTTPADEDKLAKKETNFGKKNDVFSAEEWYPGGELGTTEGRAYSDPTPAVTNVPGMEDSFNRGENFFERSFTLTDNPYRGLGPAWVRNNCEQCHPSYGHGKRQTIYNGKAFGNGYLLVIYHPTAGVDGDGVAYAANSYVRHVTGMPQTNAMTPFKAPVDESGINIEWKTVSGTMPSGISATQFPDGEKFQLIYPEVTIKQEAFNTFPKPDNYEVRLESTIGLYGTGLLDAIDKEDMKAQYQKEAKKADLNPAMWNKAADDWAATAWYTLADGTKAIKKFTYGMTRASLQDGPGANAMWNITNVTRSDRRYLYTTDMWAKAMSMDKDVISYIKRNGKQSGSILHPYYGNGTDEDISKNVNMLLGLNAKSDADAYKKHFVDNGPFAGQDEMSNKDYYDFMVWHRGLAVPAARGLDNPVVQRGKKVFMEIGCASCHRPSWKTGNDNYWVDNAIRDYAKSIGKNPETMLPRYAHQTIWPYTDLVQHRLFMANNIRTGWCRTTPLWGRGLSLERTGAEDRLHDCRARNEIEAIMWHAYDRRSDAFWAASKFYNLPKADRDAVVAFLRAI
>NC_015311.1|WP_013671431.1|1697258_1698035_+|dihydroorotate-dehydrogenase-electron-transfer-subunit
MKKYVLDLKVSSAERINARNVLIKLTDDKPLPEMLPGQFVEVRVDGSPSTFLRRPISINFVDRDRNELWLLVATVGEGTRTLARLHEGDMLNCVLPLGNTFTPLSHPAERILLVGGGVGVAPLLYFGKQIKEAGGSPVFLLGARTAADLAEVPLFEKYGKVCITTEDGSAGEKGFVTNHSVLSTGPFDRISTCGPKPMMMAVARYAHQKSIPCEASLENMMACGVGACLCCVEKTTEGNLCVCKEGPVFDTRRLLWGE
>NC_015311.1|WP_004354228.1|1698203_1699109_+|dihydroorotate-dehydrogenase
MADLNVKINNLHLKNPVMTASGTFGYGLEFADFVPLEEIGGIIVKGTTLKPREGNDYPRMVETPQGMLNCVGLQNKGVDYFIDHIYPEIKDIDTNMIVNVSGDSPESYAETAERLDALDSIPAIEVNISCPNVKEGGMSFGVTCSGAASIVKAVRQHYHKTMIVKLSPNVTDIAGIACACEDEGADSVSLINTLMGMAIDIERRCPKLSIRTGGLSGPAVKPVAVRMVNDVAKAVKIPVIGLGGISTAEDAIEFLMAGATAIQIGTANFIDPQVTIKVRDGINDWLDRHGCHSITEVIGCV
>NC_015311.1|WP_013671432.1|1699131_1699683_+|isochorismatase-family-protein
MKKMLLVVDPQIDFISGSLPVKGAAKAMDALAAYVKAHGDEYAVKIVTSDWHPYHHCSFADEGGQWPRHCVQHSAGAAIWEPLLVTLNESKGGFTLLYKGDSIQRDEYSIMQNEVSADVINRLVRALRIDQIDVCGLAGDICVLNTAEDLKRRGGNTRLNILEAYAPSLDGGSTLKAFIKTLD
>NC_015311.1|WP_044112402.1|1699933_1701043_-|chorismate-synthase
MNTFGKLFTLTTFGESHGAAVGGIVDGMPAGISIDTDFIQHELERRRPGQSRITTDRKEADRVELLSGVFEGKSTGAPIGFLVRNTNQHSKDYDNLRNLFRPSHADYTYYSKYGIRDHRGGGRASARITLSRVVAGALAKLVLRQLGISITAYTSQVGDIRLGGDYHQYDFSLIESNPVRCPDPEKAKEMETLIAQVKQDGDTIGGVITCVIKGCPAGLGEPEFGKLHALLGAAMLSINAVKGFEYGEGFAGSSWRGSQQNDIFLPAKDKPQTSNLKPQTPNLRLQSNHSGGIQGGISNGEDIYFRVAFKPVATLLMEQQTVDKEGHPVTMTVCGRHDPCVLPRAVPIVEAMAAMTILDALLISRTNRL
>NC_015311.1|WP_013671434.1|1701064_1701649_-|peptidylprolyl-isomerase
MENSTHRLIVVSYELYSVENGQEHFIEKTEEQKPMQFYTACEMALPAFEQEIVKYGKNTDFEFSLPKEQAYGEHDAKSVLALDKETFSHDGVFDSENIYKDAIVPLQNEQGQRFLGKVLEVSAEKVTVDLNHPLAGKDLQFRGHVIENRVADEAEVKDFFERMNQHHCGCGGDCGGDCNCGGGSNSCGGNCGCH
>NC_015311.1|WP_004354255.1|1701982_1702351_+|hypothetical-protein
MIMKKIVLTVVAVMSMTMAFAAGENDNNTANANAYKFNVSTYALSRALNLNQDQIDVVEDINRTFAAEMMNASVADSSEREAKVNDAIKKDLSYMHYILNNRQYREYVKLLNVTLNNRGLNK
>NC_015311.1|WP_013671435.1|1702832_1704923_+|S8-family-serine-peptidase
MKRFLYILFGVFLPVSLSAQRPRYEKMSPFVREAMASALTARQLTRGEGDDRLLTAFVRIDGNAAEILHRHGCKELARMGNISIAAIPLRELGRLSCCRQVSRIETGRRCSVQMDTTRVVVNAEPVHAGDGLPEAYTGHGVVVGVQDIGFDLTHPNFYSTDMSRYRIKAMWDQLSRDTLGSSLYVGRDYVGQEALLGIGHAVDGETQTHGTHTVGIAAGGGAEGNGVVSPYRGMACDADLVLVDNAADNASLIDPKDYYKYTYATDALGFKYIFDYADRHHQPCVINFSEGSHQDFHGDDQLYYQLLSAMTGPGHIIVSSAGNDGAKNTYIHKPAGQERAGAFVKGNPNRVGCTAKSGKPFAFRLTLYNKADAPVVLEVSTANVCAARDSLLADSAVIDGKKYVWRVQAYPNCYDSGEIAYDFLLGCDSGVGNSPYVSLQVMGRDADVELYRMSGYLFPHTLDPGLDAGDCSRTVFSPASSPDVICVGATGYRTSFVNYLGERKVYDNGQHGVRTPFSAMGPTLDGRTKPDVMAPGQNIISSYSTFFISNPKNINGPVQSDVRHFDYNGRTYAWNADAGTSMAAPVVTGAIALWLQADPRLTPADCLDIFSKTCTHYDTSLAYPNNLYGYGQIDVEAGLREVLRRKAAGIREVDGHGKNRLTDARIYLLDGRCVGTFQEELPRGIYIRNGRKFVKR
>NC_015311.1|WP_013671436.1|1705051_1705540_+|flavodoxin-FldA
MKKTIVVYGSSTGTCESIANTIAEKLGVEAINVADFSADTIAENDNLILGTSTWGAGELQDDWYDGVNVLKGADLSGKTVAIFGCGDAESYSDTFCGGMKELYDAAQGANILPGVSTDGYTFDDSEAVVDGKFVGLALDDVNEGDQTEARIDAWLEEIKPAL
>NC_015311.1|WP_013671437.1|1705585_1705954_+|DUF2023-family-protein
MTMMTDMMTADMKVLMNHIYEYQKGVRQMVLYTCNKKYESFATLRLEHQNIPYLIQPVGHDRMNLFFGRKECLDAIRLMVTKPLNQLSPEEDFILGAMLGYDIRVQCERYCERKCRTCKCAT
>NC_015311.1|WP_013671438.1|1706179_1707439_-|nucleotide-sugar-dehydrogenase
MDKDLKDLRIAVAGTGYVGLSIATLLSQHHRVVAVDVIKEKVDLINNRRSPIQDDYIEQYLAEKELNLTATLDAEAAYRNADFVVIATPTNYDPVKNYFDTRHVEEVIEVVMKVNPDAVMVIKSTIPVGYTENIRAKYKCDNILFAPEFLRESKALYDNLYPSRIIVGRPDGDERLDRAAHLFARLLQEGAIRQDIPTLFMGLTEAEAVKLFANTYLALRVSYFNELDTYAEVKGLDTSNIIQGVCLDPRIGSFYNNPSFGYGGYCLPKDTKQLLANYADVPENLIQAIVESNRTRKDFIADQVLHTAGYYDYYDRGDYNPDEEKECIIGVYRLTMKSNSDNFRQSSIQGVMKRIKAKGAQVIIYEPTLEDGATFFGSLVVNDLPAFKQRCHAIIANRYDKCLDDVKEKVYTRDIFRRD

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Crispr_ID: NC_015311_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_6

2362353-2362442

Orphan

Consensus_repeat	Method
GCTGCGCTCGGCAAATTGAAAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_6

>merge|NC_015311|6|2362353-2362442|CRISPRCasFinder
GCTGCGCTCGGCAAATTGAAAACAAGTTTTCTTTGCTCTCGCTCGCATTGTTTTTGCAGAAAACAGGCTGCGCTCGGCAAATTGAAAGCA

>NC_015311|6|5|2362353-2362442|CRISPRCasFinder
GCTGCGCTCGGCAAATTGAAAACA	AGTTTTCTTTGCTCTCGCTCGCATTGTTTTTGCAGAAAACAG
GCTGCGCTCGGCAAATTGAAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013671850.1\|2344817_2345024_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_004353594.1\|2366019_2366649_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NC_015311.1\|WP_004353566.1\|2355894_2357676_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_015311.1\|WP_004353573.1\|2371372_2372308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275342
NC_015311.1\|WP_013671861.1\|2370081_2371362_-\|DUF4302-domain-containing-protein	unknown	unknown	gnl\|CDD\|372921
NC_015311.1\|WP_044112501.1\|2343348_2344818_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|274377
NC_015311.1\|WP_013671857.1\|2362511_2363861_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NC_015311.1\|WP_004353575.1\|2355285_2355750_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_015311.1\|WP_013671853.1\|2350982_2354168_+\|glycosyl-hydrolase-family-85	unknown	unknown	gnl\|CDD\|119364
NC_015311.1\|WP_013671858.1\|2364103_2365255_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NC_015311.1\|WP_013671851.1\|2345597_2348924_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NC_015311.1\|WP_013671852.1\|2348949_2350767_+\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|372283
NC_015311.1\|WP_013671862.1\|2372328_2373891_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|373012
NC_015311.1\|WP_013671860.1\|2366651_2367278_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NC_015311.1\|WP_013671859.1\|2365273_2365987_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423
NC_015311.1\|WP_004353567.1\|2368855_2369920_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380530
NC_015311.1\|WP_013671856.1\|2357785_2362294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367909
NC_015311.1\|WP_004353570.1\|2367288_2368557_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NC_015311.1\|WP_044112500.1\|2342419_2343361_-\|restriction-endonuclease-BsuBI	unknown	unknown	gnl\|CDD\|377679
NC_015311.1\|WP_155813219.1\|2354528_2354702_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_004353594.1\|2366019_2366649_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.51513e-107
NC_015311.1\|WP_004353566.1\|2355894_2357676_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_015311.1\|WP_004353573.1\|2371372_2372308_-\|hypothetical-protein	gnl\|CDD\|275342	TIGR04549, LP_HExxH_w_tonB, substrate import-associated zinc metallohydrolase lipoprotein. Members of this family are lipoproteins with the typical zinc metallohydrolase HExxH motif and additional similarities to a better-documented zinc peptidase family, pfam06167. The seed alignment begins immediately after the lipoprotein motif Cys residue. Up to five members of this protein family occur per genome, in the context of certain gene pairs related to RagA and RagB, or to SusC and SusD. Those gene pairs, like the present family, are restricted to the Bacteriodetes, may number up to 100 pairs per genome, and are linked to TonB-dependent uptake of biopolymer-derived nutrients such as glycans. A possible function for this lipoprotein is to hydrolyse larger molecules to prepare substrates for import and utilization. [Unknown function, Enzymes of unknown specificity].	5.55056e-135
NC_015311.1\|WP_013671861.1\|2370081_2371362_-\|DUF4302-domain-containing-protein	gnl\|CDD\|372921	pfam14135, DUF4302, Domain of unknown function (DUF4302). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 344 and 443 amino acids in length. There are two completely conserved residues (R and L) that may be functionally important.	4.66126e-50
NC_015311.1\|WP_044112501.1\|2343348_2344818_-\|N-6-DNA-methylase	gnl\|CDD\|274377	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. [DNA metabolism, Restriction/modification].	1.78912e-17
NC_015311.1\|WP_013671857.1\|2362511_2363861_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NC_015311.1\|WP_004353575.1\|2355285_2355750_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	4.50493e-76
NC_015311.1\|WP_013671853.1\|2350982_2354168_+\|glycosyl-hydrolase-family-85	gnl\|CDD\|119364	cd06547, GH85_ENGase, Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment model.	1.96548e-23
NC_015311.1\|WP_013671858.1\|2364103_2365255_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NC_015311.1\|WP_013671852.1\|2348949_2350767_+\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|372283	pfam12741, SusD-like, Susd and RagB outer membrane lipoprotein. This is a family of SusD-like proteins, one member of which, BT1043, is an outer membrane lipoprotein involved in host glycan metabolism. The structures of this and SusD-homologs in the family are dominated by tetratrico peptide repeats that may facilitate association with outer membrane beta-barrel transporters required for glycan uptake. The structure of BT1043 complexed with N-acetyllactosamine reveals that recognition is mediated via hydrogen bonding interactions with the reducing end of beta-N-acetylglucosamine, suggesting a role in binding glycans liberated from the mucin polypeptide. Mammalian distal gut bacteria have an expanded capacity to utilize glycans. In the absence of dietary sources, some species rely on host-derived mucosal glycans. The ability of Bacteroides thetaiotaomicron, a prominent human gut symbiont, to forage host glycans contributes to both its ability to persist within an individual host and its ability to be transmitted naturally to new hosts at birth.	7.81525e-100
NC_015311.1\|WP_013671851.1\|2345597_2348924_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_015311.1\|WP_013671862.1\|2372328_2373891_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|373012	pfam14322, SusD-like_3, Starch-binding associating with outer membrane. SusD is a secreted polysaccharide-binding protein with an N-terminal lipid moiety that allows it to associate with the outer membrane. SusD probably mediates xyloglucan-binding prior to xyloglucan transport in the periplasm for degradation. This domain is found N-terminal to pfam07980.	6.91825e-22
NC_015311.1\|WP_013671859.1\|2365273_2365987_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.17432e-62
NC_015311.1\|WP_004353567.1\|2368855_2369920_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	2.81217e-42
NC_015311.1\|WP_013671856.1\|2357785_2362294_-\|hypothetical-protein	gnl\|CDD\|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	2.29981e-31
NC_015311.1\|WP_004353570.1\|2367288_2368557_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NC_015311.1\|WP_044112500.1\|2342419_2343361_-\|restriction-endonuclease-BsuBI	gnl\|CDD\|377679	pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system.	2.19794e-73
NC_015311.1\|WP_013671860.1\|2366651_2367278_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.36801e-100

>NC_015311.1|WP_013671856.1|2357785_2362294_-|hypothetical-protein
MSRNRFFSSFADALKKLRTIIRWMVWTVAGLYLSAIVLLHLPAVQGFLARKAAGAAGRKLGTEVRVGRIDLGVFNRFVLDDVLIYDQQKKRMLSAARIGARVDLWRLLRTGEIDISSAQVFGLKADFYKTDRNARPNFQFALDSLASKDTTAHTPLHLSINSLVIRHGSIRYDRLDAPRTPGRLNADHISVSGISAYLVLHELKDTSLWADLRTLAFREAAGLEVRQLTFGLKAGRRHASLCDFRLETPASSITLKELSADYRMRGKRLDDSTLRYAVKGFRASVTPADFAPLLPALKTFTETYDAALEARGTRRSLRVKRLYLADRSLSTLIRAKGRVRLRGTVPAWDCSFTPLRISGNTLRRIAQVARKPLPGPLDGLGNIFYHGSFAHNAGRYTAEGQLRTGAGSVRLAAGIHGKNFRATVHTGGFDLAKVLGNSDFGSISTDIRVEGNTDLSSILAKGDVRSFCYKGYTYRNIRLDGACRNDAFSGKASIDDPNGKLSVDGKAAGILAFLHRRGKLSADLTVDARAVNLHHLHLTDALGDRTLSFSSSVKGQGTSLDDLSGSLAVNGFAMTGEGQDIRLGRLEARASSGLLGRSLDARTDFGELHLAGQYDYATLPQSIIRVLGHYLPSLVYPHPQYSIAKGKADYAFSLQLDDTRMLNSLFRTPVETARPVRIDGRVDERHNGLDLHVEAPGIDCAGQHIRHLLLNVSSRPQGLLADISAERKGGSGPHVVLNAQGHIAENSVASDIAFRIPGDSPVHGNISSTASFARRRGGLETRLHFNPSTIHFDSVALQVQPSDLSYHRNSLTIDHFELSNRNQHIIANGQTSGNPGDSILVRFREIDVPYILNLVNFHSVSFAGTATGTAAVRSFFHHPQMEARLEVNGFQFEEGDMGTLHASVGYNGREGRVNIDAHADDGDARTDIKGYVDLRNSYINLPIYAHDTHLYFLRSFCGSFMDQIQARANGWCKVVGPLSNVNLEGDMEARGSIFVKPTGTVYTLHDAHIRMVPNEIIFGRDTVADPQGHIGIVTGGLHHNSLRHLTYDINIEAQNLLAYNHPKKQDKESFWGIVYGTGNCRIKGGPGETTMNIDLTPEKNTSLTYNAASAGDAGPSDFIRWVGLPEDSTDLQAAAAADTAGHTARATARQAIVIPGYDDIPSDLHMNFVLHTNPNLTLGVLLDETTGDNIRLNGSGIIRATYYNKGAFQLFGNYSVSYGQYNLTIQDIIRKQFIFQPGSTIAFGGDPFNAALNLKASYIINSVPLGDLGLGSSFSGNNTKVNCLLNIEGTPGAPTVTFGLDLPSLSPDAQQMVRSVLNSEQELNQQVLYLLAVGRFYPQTNNNSTAQKNEEHSGTALAMQSLLSGTLSQQINTVLSNVVKDNNWNFGANIATGNEGFDNAEYEGMLSGSMLNNRLLFNGQFGYRNNVAKDKGSFIGDFDIRYLLFPSGNVAFRVYNQTNDRYFTRNSLTTQGIGLILKKDFNNLGDIFGHRKKKTKKAPQKR
>NC_015311.1|WP_004353566.1|2355894_2357676_-|30S-ribosomal-protein-S1
MTNFKDVQNVQPLADFNWDEFENGARNEADKGDLTKAYDETLNKIQEHQVVEGTVISIDKKEVVVNIGYKSDGIIPASEFRYNPDLKVGDKVEVYVENQEDKCGQLVLSHKKARLQKSWENINKALENDEVIQGYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEIISHLEKGQILEGTVKNITSYGVFVDLGGVDGLVHITDLSWGRVSDPHEVVSLDQKINVVILDFDEEKKRIALGLKQLTPHPWDSLDPNLKVGDHVKGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDEVEAVILTLDREERKMSLGIKQLKEDPWETIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQGADIDVVVLEIDKENRRLSLGHKQLETNPWDEYERIYTPGSVHEGKITESMDKGAVITLNEGGEGFATPKHLVKKDGTQAQLGEVLPFMVIEFVKDTKRIILSHSRTFEEVKDEPRRPRNSNKPQKNEAAAINNVAAGTSLGDLGVLADLKKKMEEGK
>NC_015311.1|WP_004353575.1|2355285_2355750_+|MaoC-family-dehydratase
MAKLTVNNYDELAARLGEKLGESEWLPVDQERINLFADATLDHQWIHVDPERAKVESPYKSTIAHGYLTLSLLPHMWQEIIEVKNLKMMVNYGMDKMRFGRPVLVGSRVRLVATLASIENLRGICKAGIKFQIEIEGERKPALEGVATFLYYFE
>NC_015311.1|WP_155813219.1|2354528_2354702_-|hypothetical-protein
MTLRPLYTLNQQHIYKEPSLNTDGADRRAPCVMGRNATRDRLQHIDGCTKTVSFMRP
>NC_015311.1|WP_013671853.1|2350982_2354168_+|glycosyl-hydrolase-family-85
MKKKSTLAALLLTALLSGSPASVMAQNYNFGQLNWKKMVDLFATALQHGKNFPTDEEIASKMGMTTTDLSFIKSHVQRRDILDQKGRLIKNTYTDRRVWMNLPMGSGSGGDAGYPTGVWHNDVFSLWNYTALWGSWNHSVAQIPGAWTDAAHKNGCDILGGTIFFDGASSAGAYNDWITYAGATTSDPKLAYDNYMYVKPLIHMLMYFGMDGVNINWEYKTGTVGNYKGFHKALYKYAKQVGFDGFHLGLYGSSSQLTAAQAPDWYADSDGQISDLMLNYRGEDGAENSVQNAKQANSKLGAKGLWQGFWIVSFNQDWESMADKEAQELNICLWGEHKDSRFWSYNSGSSTMEQQDHYQQFLERTFSGGNRNPLNKVGLSYSNAKMEWAGDTPPMSNWKGFADMVPERSTVKGSFPFATNFCLGNGDRYNYRGKKVSGAWYNMSAQDIVPTYRWLVLKANEKVSDAAQISKDVTPSFTHEDAFTGGTSLRLKATGSTASDIVLYRTDLTTNGTKPYALVATKKNGEKNGLLKLILFTGGQWKAYDIPQNGGNSWKEHRISLEGLAHGSKVEYVGLRVENAENGFDAYVGELQLNDGNTAKPDEVQNVDVTTTSTLVENGTTTVDLKMAWGVNHVANEYGVVYNKDANIDHFEVIYRASDANDANVVEVGRTSQWAAFIPALDITGAKKPQVAVVAVSTDLKTVTKPEWHDIKTSSEAGAKDPFGSYGQSFLDTNAEGYNNAVRLRGVERFTVKGTPDGDYKYELPYEDYLKDNSPNGVKNSARFLNYHHADKTLKVKQGETYEFTLKGFDAQVVTTGTKDDCRYCFVGGWMDFDGSGTFNYGKGVVEQPFWKDNGFYSYADGTSYANDPDKDQSTYPLDNNTKDGTEAYGERVFRAGTLRKGNPCLVKGDGLKGKITIPADAHVGKSRLRIVYSDAWFAGAFGPGSKTNKGYTLDIDVDIVGDNQPGRTYVDKHDVGNPDNWTIVTAVDKVANVTGVPSVKVVNGRLVFENTSKAEIYTVDGRLVQSIVAPVTAELHTANKTVLIVKLHNNKTVKSVKVVL
>NC_015311.1|WP_013671852.1|2348949_2350767_+|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MKLKNIGTVLVLSVAGLTLNSCLDFDVTGAEFNQTTQNEKKVVRQGKVDSLNYRVSITEAEFDAAYAKIETNLKTALGGVYATRGGKNGEPPVAHQYQYLSTFYQDAFAQYGVIPHVNYPYSGINIVSSSAIDLKAYGGAYGSYQTVTKAMVPLLNMAEVDSLPEVKATYLLFLDFASIECADNYGPMPYQDLKTNKQERPFTYDDVETIYSTVEANLDSIVKCYDYYQANRPQWYKEKIQRALTDYTKCNVSADRGGFKDMDILKRFANSLKLRMAMHIVKVNPSKAKQWAEEAVASGVIETEEQEVCFLTASTGKNNPLVELWNSWNDMRMGAGFEQVLRAYNHPFLETLFEKNDFIRSSKGEDKNLNAGEKVCGILAGAHVGQEQGSTSNPYNGFSKLINRTMNKAPLYLMKLSEVCFLRAEGAVRGWSMGGSAQQFYEQGIREGNFMDRQSQHRSYKGKYEAAMDAYLKMEKALPFTYVDPTGNDADRVSEITVGVKWNEGDSQETKLEKIITQKYIAGFPNSLEAWVDLRRTGYPRLFKMLNVQDGDGSLKEGDIVRRLPFPDTSDPATLKDVEATGLKALGGADKEGTRLWWDVEKPNF
>NC_015311.1|WP_013671851.1|2345597_2348924_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKIFKETKQKHLYFSAAFAFSLALAPAGAYAGSNARAAAVQAVQQNGNHKVTGRVVDSTGEPLIGATVLVEGTTNGTVTDIDGNFTINTPSNAKLVFSYIGYVGQSVAVNGKNTIDVTLKEESSLLKEVVVTAMGIQRKEESLTYATQKVKAEDLMKVQDPNVANSLEGKVSGLTITPSAGGAGGSTKIVLRGAKSILGSSSPLIVVDGVPMTNDARGKRDMAGEGFTYAGMSEGSDPLSLINPDDIESINVLKGANAAALYGSVAANGVVMITTKRGREGKLDINVTSNITFDSPLLTPKIQNTYGATMNGNTIQADGWGPKIGSLADNQLTMSSPLNSTNFQSGAMHDIHLRNYAQDDVKDFSRTGVTTNNSLSLSGGTEKMTTYFSMANSHSTGLLRNNNYNRNTFSLRQSYRFFNRLKVDLSLNYAQTITRNRPGGGTVGNPLYHLYLTPRNVDMDYYRNNYVTQDGKWLSGPQNYYELSGGSYSYTTDQAKLQGPRQNWAFMNAANNNPYWLINMNQSKQKEDRIWGTISGNVDIYDGLSFQARINYDHTRYKSTSKRYATTFLPASMEDYGRFWDSDSKTTEIYIDYLLNYNKTFGDFDLSATAGWVGHTIKGEYKGTDVIATYYDRTLQKLPTKVNYFDTSAGGMGATSSSKSSNWDRAWLATAQMGWKDMVFVDASYRRDWYRPFRYFKLSGISNTDNYGYFGIGANAILSKLLKLPEPVNYLKYRASYSEVGNSIPNIAYNAVSTNLQTGAINGSNYAQFVDPRPEKTRSFETGVESLWFNNRLSFDLTYYNATMSHLYMTAATGTGLTKNMNSAKVRNQGIEMTFGYDFKPVSWLRWRTSFNLSYNKNKILKTAYDEQGKERLIEQKVGGVHVKYMEGGSIGDMYVPDFDRDENGHIKLNSLGQPQFDKSGKLKYIGNMNANWQMGWSNTFTWKDLSLSFLINGRIGGKVISLTEQQLDYYGYSQRSADARLEAEKNNIVAKDYGNVPGMMLPDGSGRIVPVQSYYQAIGSADSPADYVYNATNFRMRELSLGYTFRNLFGMNRNLALSFIARNLFFIYKDAPTDPDVSLSTTNGLGAFELFNTPSTRSYGFSLKMNF
>NC_015311.1|WP_013671850.1|2344817_2345024_-|hypothetical-protein
MANSDYAGASSRGKTLALERYQSYLRDADSGRYKKGMAITAIMQQLGILSESTVYRYLRTKAVKSDRK
>NC_015311.1|WP_044112501.1|2343348_2344818_-|N-6-DNA-methylase
MLMSPLSETIYRTSSFVSSNAKAGRKQYGQFFTSESIAVFMASMFHIDLEKDSLRLLDAGAGSGILSVALLSRIREIGYTGSVKLVCYENDEKVLGVLAKNLASVKDSHFTFEIRHENYITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVCYGAPNLYFLFWAMGIHNLNEGGELVYVIPRSWTSGAYFARFRKYLLSHCAITDIHIFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADNGYVYLVTSEEEAEVLATLGRLPSTLVTDDLQMKTGIIVDFRTREVLRNEPSDKTYPLFYSQHIKDGRIVWPVGKEHEFIDTDRKGYLQENTNYLFVKRFTSKEEKRRLQCGIYLSADYPEYKYISTQNKLNYIKCASQEEVYGLYVLLNSTIYDQYYRILNGSTQVNSTEINNMPVPSKEIICKMGKELEGADLSQAVCDNILRKWIN
>NC_015311.1|WP_044112500.1|2342419_2343361_-|restriction-endonuclease-BsuBI
MDKLRKIKSLLADIGMPPAQQSDLCALTILAMAGLKEIGSFASATNNWIRIHDVIAFINSNYIAKYAENSRETFRKQAMHHFRTAALIEDNGKATNSPNYRYRLTDEFLKVIQETKKTKEDNSDNDALKEFLSCHERLTDTYASKKTMRKMPVRINEKDFTFSPSSHNRLQKAILEEFAPRFAPGSECLYVGDTTHRDMVKNEMKLRELGFDITLHDKMPDVVLYREDKDWLYFIEAVDSVGPMSPEKVRDITQMTEGVKSGKIFVTAFPDFAKFKRFSELLAWETEVWIADMPDHMIHLNGDKFMGPRQQET
>NC_015311.1|WP_013671857.1|2362511_2363861_+|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MANVIKLRKGLDIHLAGRAQEQMLPVQAAVEYALVPDDFVGVTPRVTVREGDHVRAGDPLFVDKGCPEAGFASPVSGTVSAVERGARRKVLRVKVKADAQQEYADFGVKDVAGLSADGVRDALLKAGLFGYITQLPYAVATRPDTEPKAIFVSALRDKPLQGDFEYELKGQEHDFQTGLTALSRIARVCLGIGARQTAEALTGAKDVEVNVFDGPCPAGNVGVQVNHVAPVNKGEVVWTVDPTAVIFFGRLFNTGRVNLMRRVAVAGSRVKQTGYVDALVGTPLKQILAGNVADGGHVRILNGNPLTGVIADEAAVLGAHTSEVTVIPEGDDVHEAFGWMLPRLDDFSTSRSYFSWLQGGKTYDLDARIKGGERHMIMSGEYDRVLPMDIYGEYLVKSILSGNIDSQEQLGIYEVSPEDFALAEFVDSSKLPLQKIVRQGLDILRKENA
>NC_015311.1|WP_013671858.1|2364103_2365255_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MSLRNYLDKIRPNFDEGGKLHAFKSVFDGFDSFLYVSSETSRSGVSIHDAIDSKRIMSLVVLALVPAMLFGMYNIGYQNAAAAGKLAEASCWGMFLYGLLALLPNILVSYIVGLGIEFAWAQWKGEEIQEGYLVSGILIPLIIPVTTPLWTLVLAVAFAVIFTKEIFGGTGMNIFNVALAARAFLFFSYPSRMTGDSVWVARDSIFGLGYTLPDGFTMATPLGQIGQGVTVNASLQDMITGLIPGSVGETSVIAIAIGAVILLWTDIASWKTMLSVFLGGTVMGLVFQSSGATPIPWYEHLVLGGFCFGAVFMATDPVTSARTETGKWFYGFFVGAMAIIIRVLNPGYPEGMMLAILFGNMFAPLIDYCVVQSNISKRAKRAK
>NC_015311.1|WP_013671859.1|2365273_2365987_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MKTNSNSYTIIYSAVLVLVVAFLLAFVFQALKPMQDANVQLDQQKQILFALNQDRDMTDAQAVELWKKIIVADDVIDADGKVVETGRQGGVDAGFRLDSKDAKAGRLALYRCRVDGEEKYVIPVYGNGLWGPINGFIAINGDRRTVFGAYFNHESETAGLGAEIKDNAAWQAKFKGKHLFAGGNDRQIALSVEKKISDPSTQVDAVTGATLTSNGVTEMFHAEKGGLQPYVKFLNSK
>NC_015311.1|WP_004353594.1|2366019_2366649_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MDLFSKQNREVFSNPLNLDNPIMVQVLGICSALAVTSQLKPAIVMGLAVTIITAFSNVIISLIRNTIPNRIRIIVQLVVVAALVTIVSQILKAVAYDVSVQLSVYVGLIITNCILMGRLEAFAMTNRPWPSFLDGIGNGLGYALILVIVGAVREFFGRGSLLGFKLLPQSFYDAGYMDNGMMTMPAMALILLGCVIWVHRAYFYKEDKK
>NC_015311.1|WP_013671860.1|2366651_2367278_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MEHLISLFFRSIFVDNMIFAFFLGMCSFLAVSKNVKTSLGLGAAVTFVLLVTTPVNYLLLTKVLGPDCLADGVDLTYLSFILFIAVIAGIVQIVEMAVEKFSPSLYGALGIFLPLIAVNCAIMGASLFMQQRIGLDPSSTQYIGSVWDALVYGLGSGLGWTLAIVAMGAIREKMEYSDVPKPLQGLGITFITVGLMAMAMMCFSGLKI
>NC_015311.1|WP_004353570.1|2367288_2368557_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MGQFITTSIAVFLITILVLVILLLVAKKYLSPSGKVTITINGDRQLTVDQGSSVMATLNENGVFLPSACGGKASCGQCKVQVVEGGGEILDSERPHFSRKEIKDHWRLGCQCKVKGDMALKVPESVMGVKEWECTVISNKNVSSFIKEFKVALPPGEHMDFLPGSYAQIKIPAYDCIDYDKDFDKNDIGEEYLGPWKKFNILSLKAHNPEPTVRAYSMANYPAEGDIIMLTVRIASTPFLPRPQVGFQDVPTGIGSSYIFSLKPGDKVMMSGPYGDFHPNFTSGKEMIWIGGGAGMAPLRAQIMHMTKTLHVRDREMHFFYGARSLSEAFFLEDFWELEKEYSNFHFHLSLDRQDPKADEAGVKYYTGFAVNCIRDEYLSKHEAPEDCEYYLCGPPMLIKTVTDYLDSLGVDQDAIMYDNFG
>NC_015311.1|WP_004353567.1|2368855_2369920_+|substrate-binding-domain-containing-protein
MAEKIRIKDIAERAGVSVGTVDRVLHKRPNVSAAALKRVEKVLKEMDYQPNVYASALAYNKSYTFYCLLPKHASETYWEEIETGALKAVEMRRDFDVDLEIMYYSRLDSHSFITTYQKCLKKNPDGVILVPTTLELTRPFTDELHERNIPFILLDSYMPSLQPLSFYGQDSIQSGRFAARMLMLVAGKEQAVMLMRQTKDGKMASRQQENREVGFRRYMEENCPETEILEVNLPLDEERKRYDRILEKFFSAHPEVRHCITLNSKAHIVGEFLLKTGRRNVQIMGYDMVHKNADCLRAGSIFFLIAQHAYQQGFFSVDSLFRAIVLKKKVEPVNYMPIDLLTPENIDFYHRSWG
>NC_015311.1|WP_013671861.1|2370081_2371362_-|DUF4302-domain-containing-protein
MKKTYRLLFALTALIFTASCTPEVEDAFDKPSPDRIAEAISETKDILTAAPNGWKMAYQGSGGFGGFNILCKFDKEDNVFCEEESDHAKATSHYTVQQGQGVLLSFDSFNAALHKYSDPVGKINGKSVGKDGKGFQGDFEFRVMSCTKDSIVLEGRKHGDRVVMTPMPEDLTWDSFFTQIATVASGMSSERYNIIIDKDTLPARMNLHTLHTTDKNGKAVAIPFIYTPQGIEVLKADSLNGRKLTAFTYSTDDKWVDPNDKSVMLSPRDITPLEAFFSDNWTINVGYSSTAEMNVWKAAAAYAASKNMEIVTVYFSTTPGFLSLSSYVGDNWGNLRTLYSTSGKDQITIKGFRPNPKGTANERNGAVFYNQYKLKDIANTFLVNGQATDYTLSIDNPKHPLWLRMTSNSHDEVSFVFYRGIWSADF
>NC_015311.1|WP_004353573.1|2371372_2372308_-|hypothetical-protein
MKTIKFLLMAVVVALAAACSNDDVDTSRSIFQKGEAKADSTAFDKWLRKNFADPYNIRFDYLYIDQNSDMSYNVSPADIKKSIALAKIIKHVWLDAYTELMGPDFLKQHCFREFQLIGSAEYTSNGSIVLGFAEGGIRVNLFQVNALDPAHIYIEQTTPYGTSDAFDLNRAYFHTMHHEFAHILTQLKDYSTDFRGISAGKYHTADWVNVKDLNSGAEGFVTGYASSEYNEDFAEVFSCYVTDTDAMWQKRLAQAVTAANGDESGKKAILAKLSIIRTYLKDAWGVDIDKLRTIVLRRASEVSTLDLETLN
>NC_015311.1|WP_013671862.1|2372328_2373891_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKKISVLLLGAGLLGLSSCNDFLDRLPDDRAEVNDFEKATQLVSSAYSTASPAFMMEWSSDNVTDNGKTFYYQTDQDQVYRWKAVNTTGNDDPQHVWGYAYYAVGNANQALEDLGKVKSGNIEAVRAEALLCRAWAVFSIANAFCMAYDESKADQYLGLPYPKEANRSVDKRGTLRELYENINADIEAALPHVSDEYMTVPKYHFNPRAAYAFAARFNLYYHKWDKALEYATKALGTQPASLMRTVSRYKSLSGGRREIHNNYISSSENANFMLQTAVSYLGYATTSSAFNRYNYANYLVDRELYWAEMPWGTGSINNTLYETKLLYGPNQVVVYPKLADEWEYTNAAKTRGYIHVVDPVLTADETLLVRAEAEILLKKYTEALADMNTWVSVHCAPSSGTATRPTLTIASIKAFFDSQETVPEKMESKDQMGVKKALHPQGFTIDETQTNLLYALLQMRRLETCMQGLRFMDIKRYGIAFTHLLDGENPIYFKTGDLRGALQLPGDVIEAGMEPNPREN

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Crispr_ID: NC_015311_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_7

2703160-2705052

TypeII

Consensus_repeat	Method
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	CRISPRCasFinder
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAA	PILER-CR
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	PILER-CR

24 spacers

cas2,cas9

The CRISPR arrays of NC_015311_7

>merge|NC_015311|7|2703160-2705052|CRISPRCasFinder,PILER-CR,PILER-CR
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACATAGATGTCGGAAGGAACGAGATAAGGGGCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGGAAGGAGCGCAGGGTGCGTCGCCGGTCATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAACGGATTCGAGTATGAAATGCAGATGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCATGTCATTAACTATATACTTGCTTATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACATACCACTGAAGTACCTCATCGAGCCATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAACTCAAAAAGGTGCAGGAGGCAGGGCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCACGATGCCGCCGCCTGCGTGCCCTCCGTGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAACGGCAATGGAATGACACAGGTAGCCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGATGTCTTCAGGTAAAACACAGATTGCCATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAGAATGTTCGCTCTACCTACGGTAAGGACAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCTCTCGGTACTCATTTTGGTAGATGATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACTGAGAAGTTCGGTCCTCGTGTAGCTATGCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGAATAATATGACAAATCCTTACAAACATAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAGGTGACGTTCTTTTGCGTGCTTCTTCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGTCATAGCTATCATATCAGGACCTACTAATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCCACTTTGTAGCAGTTAACTTCAAGCTATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCACAAAGTGCAATTATACGATGATATTTCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGACGAGAATACCAAGAAGCAAGCGAGCAGAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACTGAGGTGGTAGGTAGGGTATTTTCTCCATTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAATGGTCATCCGTGTACACATTGCGTGTAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGGTAAGGAGAAGATTGTTGTCAGCCCTATTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACTTCATCAACAAACTCTTTGAAACGCTCAAGTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACATATTGTAGGTTGGTTCAAAAAGACTTTCCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGGTATATTCATTCCAATGATTGTTCCCTTAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC

>NC_015311|7|6|2703160-2705052|CRISPRCasFinder
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	ATAGATGTCGGAAGGAACGAGATAAGGGGC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGAAGGAGCGCAGGGTGCGTCGCCGGTCAT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GCAACGGATTCGAGTATGAAATGCAGATG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GCATGTCATTAACTATATACTTGCTTATTT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	ATACCACTGAAGTACCTCATCGAGCCATC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GCAACTCAAAAAGGTGCAGGAGGCAGGGCG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	CACGATGCCGCCGCCTGCGTGCCCTCCGTG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AAAACGGCAATGGAATGACACAGGTAGCCG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GATGTCTTCAGGTAAAACACAGATTGCCAT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AGAATGTTCGCTCTACCTACGGTAAGGACA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GCTCTCGGTACTCATTTTGGTAGATGATTT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TGAGAAGTTCGGTCCTCGTGTAGCTATGCT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GAATAATATGACAAATCCTTACAAACATA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AAAGGTGACGTTCTTTTGCGTGCTTCTTCT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GTCATAGCTATCATATCAGGACCTACTAAT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	CCACTTTGTAGCAGTTAACTTCAAGCTATC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GCACAAAGTGCAATTATACGATGATATTTC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GACGAGAATACCAAGAAGCAAGCGAGCAGA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TGAGGTGGTAGGTAGGGTATTTTCTCCATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AAATGGTCATCCGTGTACACATTGCGTGTA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTAAGGAGAAGATTGTTGTCAGCCCTATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TTCATCAACAAACTCTTTGAAACGCTCAAGT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	ATATTGTAGGTTGGTTCAAAAAGACTTTCC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTATATTCATTCCAATGATTGTTCCCTTA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC

>NC_015311|7|2|2703237-2703440|PILER-CR
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGGAA	GGAGCGCAGGGTGCGTCGCCGGTCAT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAA	CGGATTCGAGTATGAAATGCAGATG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCATGTCATTAACTATATACTTGCTTATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACATACCACTGAAGTACCTCATCGAGCCATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAACTCAAAAAGGTGCAGGAGGCAGGGCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCACGATGCCGCCGCCTGCGTGCCCTCCGTGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAACGGCAATGGAATGACACAGGTAGCCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGATGTCTTCAGGTAAAACACAGATTGCCATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAGAATGTTCGCTCTACCTACGGTAAGGACAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCTCTCGGTACTCATTTTGGTAGATGATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACTGAGAAGTTCGGTCCTCGTGTAGCTATGCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGAATAATATGACAAATCCTTACAAACATAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAGGTGACGTTCTTTTGCGTGCTTCTTCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGTCATAGCTATCATATCAGGACCTACTAATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCCACTTTGTAGCAGTTAACTTCAAGCTATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCACAAAGTGCAATTATACGATGATATTTCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GACGAGAATACCAAGAAGCAAGCGAGCAGA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TGAGGTGGTAGGTAGGGTATTTTCTCCATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AAATGGTCATCCGTGTACACATTGCGTGTA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTAAGGAGAAGATTGTTGTCAGCCCTATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TTCATCAACAAACTCTTTGAAACGCTCAAGT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	ATATTGTAGGTTGGTTCAAAAAGACTTTCC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTATATTCATTCCAATGATTGTTCCCTTA


>NC_015311|7|3|2704466-2705052|PILER-CR
	GGAGCGCAGGGTGCGTCGCCGGTCAT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAA	CGGATTCGAGTATGAAATGCAGATG
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCATGTCATTAACTATATACTTGCTTATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACATACCACTGAAGTACCTCATCGAGCCATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCAACTCAAAAAGGTGCAGGAGGCAGGGCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCACGATGCCGCCGCCTGCGTGCCCTCCGTGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAACGGCAATGGAATGACACAGGTAGCCGATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGATGTCTTCAGGTAAAACACAGATTGCCATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAGAATGTTCGCTCTACCTACGGTAAGGACAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCTCTCGGTACTCATTTTGGTAGATGATTTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACTGAGAAGTTCGGTCCTCGTGTAGCTATGCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGAATAATATGACAAATCCTTACAAACATAATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACAAAGGTGACGTTCTTTTGCGTGCTTCTTCTATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGTCATAGCTATCATATCAGGACCTACTAATATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACCCACTTTGTAGCAGTTAACTTCAAGCTATCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCACAAAGTGCAATTATACGATGATATTTCATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GACGAGAATACCAAGAAGCAAGCGAGCAGA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TGAGGTGGTAGGTAGGGTATTTTCTCCATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	AAATGGTCATCCGTGTACACATTGCGTGTA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTAAGGAGAAGATTGTTGTCAGCCCTATT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	TTCATCAACAAACTCTTTGAAACGCTCAAGT
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	ATATTGTAGGTTGGTTCAAAAAGACTTTCC
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC	GGTATATTCATTCCAATGATTGTTCCCTTA
ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013672083.1\|2688436_2689018_-\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NC_015311.1\|WP_004352654.1\|2709348_2709804_-\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
NC_015311.1\|WP_013672082.1\|2687548_2688316_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|153431
NC_015311.1\|WP_004352667.1\|2709908_2710226_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013672091.1\|2711464_2713768_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NC_015311.1\|WP_013672085.1\|2692502_2693939_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015311.1\|WP_013672092.1\|2714539_2715787_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_015311.1\|WP_004353840.1\|2686350_2687325_-\|glycosidase	unknown	unknown	gnl\|CDD\|350107
NC_015311.1\|WP_013672086.1\|2694145_2696866_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_015311.1\|WP_155813223.1\|2692297_2692471_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_081457128.1\|2705623_2705908_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112561.1\|2697532_2701798_+\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NC_015311.1\|WP_013672093.1\|2717321_2717810_+\|DUF4494-domain-containing-protein	unknown	unknown	gnl\|CDD\|379718
NC_015311.1\|WP_013672081.1\|2683941_2686197_-\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NC_015311.1\|WP_004352657.1\|2715890_2717096_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181036
NC_015311.1\|WP_036854969.1\|2702719_2703052_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_015311.1\|WP_013672084.1\|2689117_2691502_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_015311.1\|WP_013672089.1\|2710353_2711301_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NC_015311.1\|WP_004352669.1\|2708406_2709147_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NC_015311.1\|WP_013672088.1\|2705925_2708394_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013672082.1\|2687548_2688316_-\|thiamine-diphosphokinase	gnl\|CDD\|153431	cd07995, TPK, Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.	6.48677e-38
NC_015311.1\|WP_004352654.1\|2709348_2709804_-\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	2.18441e-66
NC_015311.1\|WP_013672085.1\|2692502_2693939_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	9.78884e-114
NC_015311.1\|WP_013672092.1\|2714539_2715787_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	9.75808e-56
NC_015311.1\|WP_013672091.1\|2711464_2713768_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	3.93027e-73
NC_015311.1\|WP_013672086.1\|2694145_2696866_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_015311.1\|WP_004353840.1\|2686350_2687325_-\|glycosidase	gnl\|CDD\|350107	cd08993, GH130, Glycosyl hydrolase family 130. This subfamily contains glycosyl hydrolase family 130 (GH130) proteins, as classified by the carbohydrate-active enzymes database (CAZY), are phosphorylases and hydrolases for beta-mannosides, and include beta-1,4-mannosylglucose phosphorylase (EC 2.4.1.281), beta-1,4-mannooligosaccharide phosphorylase (EC 2.4.1.319), among others that have yet to be characterized. They possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Beta-1,4-mannosylglucose phosphorylase is involved in degradation of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine linkages in the core of N-glycans; it produces alpha-mannose 1-phosphate and glucose from 4-O-beta-D-mannosyl-D-glucose and inorganic phosphate, using a critical catalytic Asp as a proton donor. This family includes Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) and beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2), enzymes that phosphorolyze beta-mannosidic linkages at the non-reducing ends of their substrates, and have substantially diverse substrate specificity that are determined by three loop regions.	8.19121e-158
NC_015311.1\|WP_013672083.1\|2688436_2689018_-\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.50137e-49
NC_015311.1\|WP_044112561.1\|2697532_2701798_+\|hypothetical-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	2.26824e-24
NC_015311.1\|WP_013672093.1\|2717321_2717810_+\|DUF4494-domain-containing-protein	gnl\|CDD\|379718	pfam14902, DUF4494, Domain of unknown function (DUF4494). This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 172 amino acids in length. There are two conserved sequence motifs: VDA and EAE. There is a single completely conserved residue E that may be functionally important.	1.61679e-70
NC_015311.1\|WP_013672081.1\|2683941_2686197_-\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NC_015311.1\|WP_004352657.1\|2715890_2717096_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181036	PRK07568, PRK07568, pyridoxal phosphate-dependent aminotransferase.	0
NC_015311.1\|WP_036854969.1\|2702719_2703052_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	9.06731e-27
NC_015311.1\|WP_013672084.1\|2689117_2691502_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.99486e-22
NC_015311.1\|WP_013672089.1\|2710353_2711301_-\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.69415e-147
NC_015311.1\|WP_004352669.1\|2708406_2709147_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	1.08201e-127
NC_015311.1\|WP_013672088.1\|2705925_2708394_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0

>NC_015311.1|WP_036854969.1|2702719_2703052_+|CRISPR-associated-endonuclease-Cas2
MQRLSEYRVMWVMVFFDLPTNTNKEKRAYTIFRKDLMKDGFTMFQLSIYVRHCASRENADVHVKRVKSFMPNSGNVCIMVITDKQFGEIELFCGAQAQTPNAPGQQLELF
>NC_015311.1|WP_044112561.1|2697532_2701798_+|hypothetical-protein
MTQKVLGLDLGTNSIGSSVRNLDLSDDLKGQLEFFSSDIFRSSVNKESNGREYSLAAQRSAHSRSRGLNEARRRKLWATLDLLIKYELCPMFPESLMRWRTYDKQRGLFREYPIDDKDFNAWILLDFDGDGKPDYSSPYQLRRELVTRQFDFDQPIERYKLGRALYHIAQHRGFKSSKGETLSQQETNSKQSLTDEATDVAGEMKASEEKLSKGLSTYMKENNLLTVGAAFAQLEDEGVRIRNNNNYRAIRSQFQHEIETIFMFQQGLSENELYERLVSEKKNIGTIFYKRPLRSQRGNVGKCTLERTKPRCAIGHPLFEKFRAWTLINNIKIRMSEEEQAEQLPMKLRFELYNDCFLAFVRAEFKFEDIRKYLEKRLGVHFSYNDKTINYKDSTSVAGCPITARFRKLLGEDWESFHVDGQKQRQAHGKNNASFHTVSYSTNDIWHFCYDAEEPEAVLSFAQDNLKWEKKKAEELVRIWSAIPQGYAMLSQKAIRNINKMLILGLKYSDAVLLAKVPEIVEITDGEILSVTEDYHRVEAQVGYEKQINNIVNALIAKYKSASEEYRFADHNYEYQLDKSDEKDIIKQIESNIGTRKWSLLDADEQTDILQKVRDKYQNFFRSHERKFVESPKLGECFEEYLMKKFPMVEGEQWKKLYHPSQIAIYRPVSAGKDRSALRLGNPDIGAIKNPTVLRVLNTLRKRVNQLLDDGLISPDETRVVVETARELNDANRKWALDNYNRIRHDENEKIKKILEEFYPKRDGISTDDIDKARYVIDQREMDYFTEEKPYNKDIKKYKLWLEQGGQCMYTGRTINLSNLFDPNSFDVEHTIPESISFDSSDMNLTLCDAHYNRFIKKNHIPADLPNYDKSVVIDGKEYSPIKPRLQRWADRVERLNRNVEYWRGQARRAQNKDRKDQCMREMHLWKMELEYWTKKLERFTITEVTDEFKNSQLVDTRVITRHAVLYLKSIFPHVDVQRGDVTAKFRKILGIQSVDEKKDRSLHSHHAIDATTLTIIPGAAKRERMLELFAKIEEVNKMLSFSGNEDRTGLKQELDGLKNQLNKEVKACRIGHNVSEIGTFINDNIIINHHVKNQALTPVRRRLRKRGHIVGGMDNPRWQTGDALRGEIHKASYYGAITQFAKDKDGKVLLKEGHPLVDPTIKFVIRRELKYKKSTADSGFASWDDLEKAIVDKELFALMKGQFPEETSFKDACEQGIYMIKKGKNGEVDTKLYRIRHIRCKTKQKNALKIKEQAYKSEKEYKRYFYAAVGDLYAMCCYTNGKTREFKIYSLYDISCHRKVGVEDIPEFITDKKGNRLMLDYKLHTGDMILLYKENPEELYDLDNVSLSKLLYKINGFENDGLRIRMVNHLVAKEAMGESVKDYAKLPDIIRCGVKTIKFLVMGENRDFVIKNGKISFNHR
>NC_015311.1|WP_013672086.1|2694145_2696866_+|pyruvate,-phosphate-dikinase
MSEKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTDVCNEYFEKGKETVVGLLKADVEKSVKHIETLMNSKFGDPANPLLVSVRSGARASMPGMMDTILNLGLNDSVVEGLAKKTGNERFAFDSYRRFVQMYGDVVLGMKPVNKEDIDPFEAIIQKVKAQRGIKLDNEMTVDELKQLVVLFKQAIKEQTGKDFPTDPMEQLWGAVCAVFDSWMNERAILYRKMEGIPQEWGTAVTVMAMVFGNMGDTSATGVCFSRDAATGENRFNGEYLINAQGEDVVAGIRTPQQITKEGSLRWAAQQNIDEETRSTKYPSMEEAMPELYAQLYALQDKLERHYHDMQDMEFTVQEGKLWFLQTRNGKRTGTAMVKIAMDLLHEGEIDEKTALLRCEPNKLDELLHPVFDKEALTQVHVLTRGLPASPGAACGQVVFFADDATKWHEDGHQVIMVRIETSPEDLAGMSAAEGILTARGGMTSHAAVVARGMGKCCVSGAGAIMVDYKARTVEIDGTVIREGDYISLNGSTGEVYAGEVKTRPAEVTGDFAELMNLCKKYTKLVVRTNADTPHDAEVASNFGAVGIGLCRTEHMFFENEKIKAMREMILADSTEDREKALDKLLPYQKQDFYGILKCMDGMPVNIRLLDPPLHEFVPHDLKGQETMAEEMGVSVQFIQERVSSLSEHNPMLGLRGCRLGNTFPEITAMQTKAILGAAIQLKKEGFDPKPEIMVPLVGIVNELDVQEHIIRKTASKLFKKEGVEVPFKVGTMIEIPRAALTADVIAEKAEYFSFGTNDLTQMTFGYSRDDIASFLPSYLEKKILDVDPFQVLDQKGVGQLIKMAVEKGRKTRKNLKCGICGEHGGEPTSVKFCHRVGLDYVSCSPFRVPIARLAAAQAAVEE
>NC_015311.1|WP_013672085.1|2692502_2693939_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MSRKRKPLPILENVTIEAVAAEGKCIAHVDDKVVFVPFVVPGDVVDLQVRRKKRTYCEATVVRFISRSTVREEPMCAHFGICGGCKWQNLPYAEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCASKRWYTAEELQALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRAQHGLLRDIMVRNSNTGEWMVLIQFHYDEEEDDARAKALMQHVSDRFPQITSLFYVDNQKGNDTFNDLDLIVFKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVARAFAALTGNELVYDLYTGTGTIANFVARNARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAGDMKDILTEDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLALLDADYRVAAVQPVDMFPHTPHVENVVLLEKREAVS
>NC_015311.1|WP_155813223.1|2692297_2692471_-|hypothetical-protein
MSRNIRLPFHAGSPTPAARMAGLAGFHQSQCDRQSIYGHHIVGKLATRCQKLEPVDN
>NC_015311.1|WP_013672084.1|2689117_2691502_-|TonB-dependent-receptor
MKRIILFAAALTCVAATKAQTTTDTLKQQQLDEVVVSGVRVQKNAPYAVANIKKDELESFSKSGRELPFLLARTPGVLAWGENGLGTGTAAMRIRGAAGSRINITLDGVALNSPEDQTVFWANMNSYASLMGSVQIQRGIGTSTNGDGAFGGSVSMATSTPGRKPSVEVSGSYGSYNTYNAGVKFSTGLLFNHLVFDGAYHETATDGYIHGTSGRSGSYYGGLTWLGDNFRISYKNIGNFEKTGQAWNGVVTGSNDLSLMDGTYGAKTGIMTYKDMYERGLGKFNQLYEYLQTDANGAFIKDANGNYQTARYTMRDGSFWNKTTDNFYQNHNLLSFAFHPSNHWSHNVTLHYTYGYGYYSEFKHNTKFAKFGLAFTDSNGKFIKKSDFVRRKGLSQHTYGIVYTSNYKDENWDVTGGLNLQQFRGGHFGYLTYIKNEEADAKYRAGGHDYKYYDSDAHKYDYSGFFKAKYHFSDYWNVFMDLQYRHVEYQTDGQNDRFYKAGNGYRNQLLDISERYDFVNPKAGISYYRSGHKAYASIAYANREPERNNFTDNGSYPAPSPERMMDIEAGYQYDGNSWHAGVNLYYMDYNNQFVQTGAQSDIGANLTTNIKDSYRMGAELEAGWSPLSWLTVEGNAALSRNIIKDFDEMASVDWESSFRKIHYNHSTLAFSPSAILNGMLNLHYKGFEAVWHTNFVSRQYLDNTENMTRSLPCYSQTNVNLSYTLRPTKHIAGLKEAVFGVNLNNIFNRHYAASGWVYSTILDNNGHPNENRYTQIGFIPMAGFNMMGNVTLKF
>NC_015311.1|WP_013672083.1|2688436_2689018_-|nicotinamide-mononucleotide-transporter
MTLDMLGCLVGLIYIYQEYKASIWLWLTGIIMPVIYMFVYYEAGLYADFGMQIYYTLAAIYGFLYWKFGPKRGGGREIPITHYPRRLVLPSILVFLLLWGGLYLVLIHFTNSTVPVWDSFGNALSFIGLWALAKKYIEQWWIWIVVDVELAGLYLYKEIPFTAGLYALYAVIAVAGYFKWKRCLHPTEKRGNT
>NC_015311.1|WP_013672082.1|2687548_2688316_-|thiamine-diphosphokinase
MINNIKTGVSTFLSETGSGQPVSSQLFSAGPGKTLAEGFQAVILAAGDFPYHVIPLRILREADNLVVCDGALEELLEYEIEPAAVVGDGDSLSAALKQRYAHIYHQISEQEFNDLTKATLFARSHLQMDASTHIRPRFCYLGTTGKREDHTLGNISLMLYYHRQLGIDPVMVTDYGWFVPASGTTRFGSFPGQQVSIYNATCKELASEGLKWDAYPFQEMWQGTLNEALTTEFTIHADGDYLVYRTHRKQNKNKV
>NC_015311.1|WP_004353840.1|2686350_2687325_-|glycosidase
MKSLKDILPWEDRPEGCKDVMWRYSKNPIIGRYHIPTSNSIFNSAVVPFEDGYAGVFRCDNKAVQMNIFAGFSKDGIHWEINHEPIKFEAGNTEMIESEYKYDPRVTWIDDRYWITWCNGYHGPTIGIAYTFDFKKFYQCENAFLPFNRNGVLFPEKINGKYAMLSRPSDNGHTPFGDIYISFSPDMKYWGEHRCVMKVTPFPESAWQCTKIGAGSVPFLTDEGWLLFYHGVINTCNGFRYSMGAAILDKDHPEKVLYRTRPYLLAPAATYELQGDVPNVVFPCAALQDGERVAVYYGAADTVVGMAFGYIKEIVAFTKNNSIL
>NC_015311.1|WP_013672081.1|2683941_2686197_-|glycoside-hydrolase-family-92-protein
MKHNFLLGLLISLSFLSLEAAGKEREEPVDLVNPFIGTSNFGTTNPGAVCPNGLMSVVPFNVMGSDLNKYDKDARWWSTPYEYHNVFFTGYSHVNLSGVGCPEVGSLLLMPTTGKLNVDYKEYGCTYDKEAAQPGYYSNHLVKYDVTTEVTATLRSSVARFTFPKGESHVLLNLGEGLTNETGAMVKKVSDTEWEGVKLQGTFCYNPQAVFPIYFVMRVSKKPSAAGYWKKQRPMTGVEAEWDADNGKYKLYKTYQKELAGDDIGVWMDYDTEAGDQVEVQMGVSFVSMANARENLDAEQRGKDFDAIRAEARTKWNDDLSRILVEGGTKTEQTIFYTALYHTLIHPNILQDVNGQYPAMERNDIRTVKEGNRYTVFSLWDTYRNVHQLLTLVYPNRQRDMIRTMISMYDEHGWMPKWELFGRETYTMEGDPAIPVITDSWLKGLRGYDINRAYEAFRKSALTKGSDNPLRPDNDEYMEKGYVALHEQFDNSVSHALEYYIADNALSRLAAALGKKDDARLFHNRALGYRHYFSKEYGMLRPLMPDGTFFKPFNPRQGENFEPSPGFHEGNAWNYTFYVPHDVTGLARLMGGRKAFVSKLQSVFDKGYYDPANEPDIAYPYLFSYFKGEEWRTQILTRRLLKKYFKNAPEGIPGNDDTGTMSAWAVFNMIGFYPDCPGDPSYTLTSPVFDKVTIRLDKEQWGKDQLVIETARPSTEAVIIRKMELGGKPLSRYRITNDELLKGGTLKFYLK
>NC_015311.1|WP_081457128.1|2705623_2705908_+|hypothetical-protein
MPAFAVCYKPLFYFLSMHGRTPFLYRFQDTKAIMLAAAKIYILKQFTTEEFHYHGAVGLYGSVEAQMVNGESAAFFFYPFAMSGIFRTFARISE
>NC_015311.1|WP_013672088.1|2705925_2708394_+|phenylalanine--tRNA-ligase-subunit-beta
MKISYKWLKEYVDFDLTPQETADALTSTGLEVDALDEVETIRGGLKGLFVGKVLTCEAHPNSDHLHVTTVDLGKGEPQQIVCGAPNVAAGQKVIVADLGCVLYDGDKEFTIKKSKLRGVESLGMICAEDEIGVGTSHDGIIVLPEDAPVGQPAAEYYHLDSDWLIDIDITANRADALSHYGVARDLYAWLTQNGYKTSLHRPDCSAFRVDNHDLPVDVTIENTDACRRYACLSITDCEVKESPKWLKDKLNVVGLRPINNIVDITNYIMMAYGQPMHCFDADMVKGHHIIVKDKNEGKKFVTLDGEEHTLGEHDLAICNAEEPMCIAGVFGGKGSGTYETTKNVVLESAYFHPTWIRKSARRHGLSTDASFRFERGIDPNGTVYALKQAAILCKELAGGKISMEVRDEYPTKMEDFPVRLNYEYCDRLIGKKLGHETIRRIAESLEMRVQKEDAEGLDLLVPAYRVDVQRPCDVVEDILRIYGYNNVEIPTELKSSLTIAEEADRNYHRENIIGEQLVGEGFSEIMNNSLSKSSYYEETELNAYPWEETVKVMNPLSADLGVMRQTLLFGGLESIVRNVNRKAQNLRFFEVGNVYKYNKEKWTEESPVKAYVQDYHMALWVTGKRVQGSWAHPDEESSFYELKAYVENILHRIGVAQGLLVSEKSDNNVFDKAIALKTRAGKVLVEMGILSYRLLKSFGLEQKVYYAELDWAGLMKAIRKNRLQFQEISKYPAVSRDLALLVDDKVEFAQIEEIARQTDKKQLKRVELFDVYQGKNLPEGKKSYAVNFILQDESKTLNDKAIDAIMQKLIKNLTNKLGAELR
>NC_015311.1|WP_004352669.1|2708406_2709147_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEYRKATKLKRWGHMARTFTKLGKEIAIAVKAGGPEPENNPRLRAIIATCKRENMPKDNIQRAIKNAMGKDQSDYKEVPYEGYGPHGIAVFVDTLTDNTTRTVADVRSVFNKFNGNLGTQGSLSFLFDHKAVFTFKKKEGVDMDELILDLIDYGVDDEYDEDDEENEITIYGEPTSFGDIQKHLEDNGFEITSAEFTRIPNDLKDVTPEQRETIDKMVEKLEDFDDVQNVYTNMRPAEEEEA
>NC_015311.1|WP_004352654.1|2709348_2709804_-|aspartate-carbamoyltransferase-regulatory-subunit
MSKKERLVAAIENGTVIDHIPAEKTFQVVNLLQLQKLSTPVTIGYNFSSKMVGTKGIIKVSDKFFTDDEISRLSVVAPNVVLNIINDYEVVEKKKVVTPDELRSIVKCNNPKCITNNEPMDTIFHIVDKAHGILKCHYCDKEQEMDKVELV
>NC_015311.1|WP_004352667.1|2709908_2710226_-|hypothetical-protein
MEWTSELPGNPKDMTVPARGGSFRLTCTNYHHPWLTDVKTADTTVHATVIGQDFLHIRHDWYDVEVKKNVYHITIQPNTSGKLRCLYIGATAGDIFDRIKITQEK
>NC_015311.1|WP_013672089.1|2710353_2711301_-|aspartate-carbamoyltransferase
MEKHDFVNIQGLDRDQLLYLIRMAREFERHPNRELLKGKVIATLFYEPSTRTRLSFETAANRLGARVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVMRHYIEGAAQYASEVAPVPIINAGDGAHQHPSQCLLDLYTIYQTQGTLENLNIYLVGDLKYGRTVHSLIMAMRHFNPTFHFIAPKELAMPEEYKLYCREHGIRFEEHETFTPDVIANADILYMTRVQKERFSDLMEYERVKNVYILRRDMLSQARPNMKILHPLPRVNEIAYDVDESPHAYFIQQARNGLFAREAIFCHCLGISLEDVKNDRTILE
>NC_015311.1|WP_013672091.1|2711464_2713768_+|penicillin-binding-protein-1A
MRRHFVHFLWGFLIVLLGSISVFFVSVWNGWVGYMPDMEELSDPIDKFASQVYSSDQQLIGTWNQDNNNRVAIDYNGLSPHLVHALVATEDERFYEHSGIDFIALGRAIVKRGVMRQASAGGGSTITQQLAKQLFSEKAHSTLERLLQKPIEWIIAVKLERHFTKEEILAMYFNYFDFLHNAVGIKRAANVYFNKEPRNLNVTESALLVGLCKNPSMFNPLRHPERCLQRRNVVLMQMVKSGYVTKDEYAELSQRPLGIHFTKAKPVNGSADYFQAFLRQYMMARKPERENYQTWQNRQFVLDSIAWEQDPLYGWCNKNTKRNGEPYNVNTDGLRIYTTIDTRMQQYAEEAVRKHVGGYLQAQFNLASRYKKNAPFSSNISRRTIKEILNRSCRQSLRYQRMKEQGATPEEIKRSFRTPHEMTLFTYHGDIDTVMTPIDSIRYYKSFLRAAFMSMDPHTGAVKAYVGGIDYQHFKYDVVMGGRRQVGSTIKPYLYALAMQNGMTPCTLAPNVQRTYGGWTPRNGSHARYGQEVPLRWGLQQSNNWISAYLINLLGPSQFVNILHDFGLNNPDIDKNAGPVLCLGPCEASVGEMTSAYTTFANGGIRCAPLFVTKIEDSHGNVIAKFQPLMTEVISEVSSYQMIDMLRAVIQGGTGSRLRYAYHLTADIGGKTGTTNNNADGWFMGITPDLVSGCWVGGEDRDIHFDNTSMGQGATTALPVWAYYMQSVYADRRLGYRQTAKFAVPAKFNPCQTTDTINVNGIQEEYF
>NC_015311.1|WP_013672092.1|2714539_2715787_-|ABC-transporter-permease
MNYPLFIARKIYNGGDKTRKVSKPAIRIATVGVAIGLAVMIVSVCVVLGFKHTIRDKVVGFGSHITVADFLTLQSSEQYPIQVSDSLIKVLKAVPGVRHVQRYVYTQGILKTDNDFLGIVLKGVGPDFDSTFIHHNMVEGCLPHFSDTESHQKLVVSRTIADKLNLKTGQRIFAYFINKQGVRTRRFTIAGIYATNMKQFDSQICFTDLYTANKLNGWEPDQYSGAELQVDDFSQLDAVSLRVLEKVKNTVDHYGETYSSENIIEQNPQIFSWLDLMDMNVWIILALMTAVAGVTMISGLLIIILERTQMIGILKALGSHNRQIRHIFLWFAAFIIGRGLFWGNLIALGCIFLQKWTGFVKLDPQTYYVSTVPVELNIPLIIALNLATLLVCVGVLIAPSYLISHIHPARSMHYE
>NC_015311.1|WP_004352657.1|2715890_2717096_-|pyridoxal-phosphate-dependent-aminotransferase
MPEISVRGLEMPESPIRKLAPLGVAAKSRGIKVYHLNIGQPDLPTPQCGLDALKKIDRRLLEYSPSQGFLSYREKLCGFYKKFNINVTPDDIIITAGGSEAVLFSFMACLNPGDEIIVPEPAYANYMAFAISAGAKIKTIATSIEEGFALPKVEKFEELINERTRAIMICNPNNPTGYLYTRREMNQIRDLVKKYDLYLFSDEVYREYIYTGSPYISAMHLQGIEDNTVLIDSVSKRYSECGIRIGALITKNEEIRKAVMKFCQARLSPPLIGQIVAEASLDAPESYYRDIYDEYVDRRKCLIDGLNRIPGVYSPIPMGAFYTVAKLPVDDSEKFCRWCLDEFSYEGETVMMAPASGFYTTPGAGRNQVRIAYVLKREDLQRALVVLKKALEAYPGRVEEE
>NC_015311.1|WP_013672093.1|2717321_2717810_+|DUF4494-domain-containing-protein
MRSRTSTWFETRVRYDKTMEDGQNKKVIEQYVVDALSFSEAEELITEEMSHYVSGEFDVKAIAPAVYGEIFFSDVDTDDKWFKARLSFITIDEKTEKERRSSVTYLVQAHSVNGAVKHVDEVMKSTMIDYEIAAITETKIMDVFEHRAGGKGGAEEKPEFEQ

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Crispr_ID: NC_015311_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_8

2758526-2758630

Orphan

Consensus_repeat	Method
TGCTCCTGTTTTGCCGAGCGCAGCTTATTTTCTGCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015311_8

>merge|NC_015311|8|2758526-2758630|CRISPRCasFinder
TGCTCCTGTTTTGCCGAGCGCAGCTTATTTTCTGCAAAAATAATGCAAGTGAGGGCAAATGGAGCTTGCTCCTGTTTTGCCGAGCGCAGCTTATTTTCTGCAAAA

>NC_015311|8|7|2758526-2758630|CRISPRCasFinder
TGCTCCTGTTTTGCCGAGCGCAGCTTATTTTCTGCAAAA	ATAATGCAAGTGAGGGCAAATGGAGCT
TGCTCCTGTTTTGCCGAGCGCAGCTTATTTTCTGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013672130.1\|2769340_2769787_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013672124.1\|2756793_2758437_-\|diphosphate--fructose-6-phosphate-1-phosphotransferase	unknown	unknown	gnl\|CDD\|235930
NC_015311.1\|WP_013672121.1\|2751740_2753399_-\|hemin-receptor	unknown	unknown	gnl\|CDD\|224978
NC_015311.1\|WP_013672116.1\|2747674_2748178_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_004353503.1\|2767003_2767432_+\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|236449
NC_015311.1\|WP_013672129.1\|2768130_2769168_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NC_015311.1\|WP_004353437.1\|2746632_2747586_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_015311.1\|WP_013672131.1\|2769783_2771040_+\|DUF5103-domain-containing-protein	unknown	unknown	gnl\|CDD\|379920
NC_015311.1\|WP_081457129.1\|2748134_2748824_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013672119.1\|2750085_2750751_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_015311.1\|WP_004353470.1\|2765260_2766826_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|130187
NC_015311.1\|WP_004353453.1\|2759045_2759609_+\|acyltransferase	unknown	unknown	gnl\|CDD\|153250
NC_015311.1\|WP_013672118.1\|2748955_2749972_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_015311.1\|WP_044112786.1\|2753441_2754503_-\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013672126.1\|2762956_2765095_+\|YgiQ-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|234874
NC_015311.1\|WP_013672125.1\|2759605_2762197_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271154
NC_015311.1\|WP_004353446.1\|2758772_2759045_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_013672123.1\|2754682_2755549_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NC_015311.1\|WP_004353440.1\|2762221_2762560_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112571.1\|2755457_2756348_-\|glycosyl-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119384

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013672124.1\|2756793_2758437_-\|diphosphate--fructose-6-phosphate-1-phosphotransferase	gnl\|CDD\|235930	PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional.	0
NC_015311.1\|WP_013672121.1\|2751740_2753399_-\|hemin-receptor	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	0.00268309
NC_015311.1\|WP_013672131.1\|2769783_2771040_+\|DUF5103-domain-containing-protein	gnl\|CDD\|379920	pfam17116, DUF5103, Domain of unknown function (DUF5103). This is a family of Bacteroidetes proteins of unknown function.	1.33392e-129
NC_015311.1\|WP_013672129.1\|2768130_2769168_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.82325e-176
NC_015311.1\|WP_004353437.1\|2746632_2747586_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	9.73548e-81
NC_015311.1\|WP_004353470.1\|2765260_2766826_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NC_015311.1\|WP_013672119.1\|2750085_2750751_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	3.8595e-09
NC_015311.1\|WP_004353453.1\|2759045_2759609_+\|acyltransferase	gnl\|CDD\|153250	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.	1.72979e-56
NC_015311.1\|WP_013672118.1\|2748955_2749972_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	4.02796e-102
NC_015311.1\|WP_013672125.1\|2759605_2762197_+\|hypothetical-protein	gnl\|CDD\|271154	cd14488, CBM6-CBM35-CBM36_like_2, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily. Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules.	2.32426e-24
NC_015311.1\|WP_004353503.1\|2767003_2767432_+\|biotin/lipoyl-binding-protein	gnl\|CDD\|236449	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.	8.10911e-29
NC_015311.1\|WP_013672126.1\|2762956_2765095_+\|YgiQ-family-radical-SAM-protein	gnl\|CDD\|234874	PRK00955, PRK00955, YgiQ family radical SAM protein.	0
NC_015311.1\|WP_013672123.1\|2754682_2755549_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	5.86013e-70
NC_015311.1\|WP_044112571.1\|2755457_2756348_-\|glycosyl-hydrolase-family-25	gnl\|CDD\|119384	cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.	8.36545e-70

>NC_015311.1|WP_013672124.1|2756793_2758437_-|diphosphate--fructose-6-phosphate-1-phosphotransferase
MEISALQKERSGYQPKLPKALQGAVKVKEGAPTQSVNNQEDIKKLFPNTYGMPLVEFEPAESANNAKMNVGVILSGGQAPGGHNVISGLFDEIKKLNPENRLYGFLMGPGGLVDHNYVEITADYLQSYRNTGGFDMIGSGRTKLEKEDQFEKGLEIIRKLNIKAVVIIGGDDSNTNACVLAEYYAAKQYGVQVIGCPKTIDGDLKNDQIETSFGFDTATKTYSELIGNIERDCNSARKYWHFVKLMGRSASHIALECALQTQPNICLISEEIQAKDQTLNDIVEYIADVVAHRAAQGNNFGVVLIPEGLIEFIPAIGRLIQELNDLLAAHGADYMHLDEDAQRRYILDHLSAENRSTFETLPEGVARQLSLDRDPHGNVQVSLIETEKLISEMVAAKLDQWKQEGKFVGKFAAQHHFFGYEGRCAAPSNFDADYCYALGSSAAQLIANGKTGYMAIVKNTTAGTDQWKAGGVPITMMMNMERRNGEMKPVIRKALVELDGAPFKAFAAQRDKWAKETCYIYPGPIQYWGPSSVCDQTTKTLELEQAR
>NC_015311.1|WP_044112571.1|2755457_2756348_-|glycosyl-hydrolase-family-25
MAGSKMFHSIIKSWNNIPGWMRWIGMICLAVLYSFFFYFFFVAPTGFRWRAVYGDPDYPSGYAIHGIDVSRYQGTINWNRLRNAMIERSPIRFIIIKSTEGDSHLDAKFRENFYNAKESGFIRGVYHFWSNHSPARRQAYFFLAMVHLQPGDLPPVLDVEHKPKNISTEEFQQNVLTWLHIVEDKYHVKPVIYTYYKFKDLYLSDSRFDDYPYWIAHYYVDQMEYKGKWKFWQHTDAGKLPGIAGYVDLDIYNGSFYDLQQLLIPEAKPVQEAGSTSHDSTDVDSLSDPALLPSGE
>NC_015311.1|WP_013672123.1|2754682_2755549_+|50S-ribosomal-protein-L11-methyltransferase
MKYIQVKFTATPDSQDVRDIIAALAGEVGFESFSDEPDGLVGYCQENLFDADALGYTMKSLPMPGVKVSFTASKVEDRNWNEEWEKGGFEPIIIDSRCAIVCKNMEETGSVPDAMDAIPMKIVIDAQQAFGTGTHETTQMIVSLLLDQELKGKRTLDCGCGTGILSIVAARCGAREAVCYDIDEWSVRNARHNAELNGVEIDVLEGDKSVLSHVNGVFDVIMANINRNIILDDLEAFAGVTTADSKMILSGFYEQDAAPILQKAAELGLKESLRLLNHGWCCLLLERV
>NC_015311.1|WP_044112786.1|2753441_2754503_-|hypothetical-protein
MKRAVLLSVLLGTMPLLSMAQDDLYFTPSKAEQSAYQQHKMEEDGPAFYSGIGKSSDEYNRRGQYNYKKIGVDSLGNDIFMSHVSTLHGDSVVLDTIYGGFTRKYEGTDDDFAYSRRMSRFDGFWGGYYDPWFMGRASVYAGWGWSSPYYYSGWYDTWYDPWYYGYYSGYPYYGYGYYYGGYPYYRGYPYYYGYAGYGWYGPWRGYYGWGYPYYGYRRGGYYAYGGHTGTANHWGRSNGSYRGSVERGGSYGNFSGYRGSTGTVSRGNAGQFGGNSVPDRSNIGQFGGSRQSYGNQGTRSYSAPNSSYSPPSNSSFGGATRSTFGGGSFGGSRAGGGNFGGTRSGGGGFGGHR
>NC_015311.1|WP_013672121.1|2751740_2753399_-|hemin-receptor
MKSKYIFFAVSLLAVMSANAQETYENAKLTGEDLNGTARYVGMGGAMEALGADISTIGTNPAGLGLFRHSNISVSGGLLIQANGREFANGNKTNPSFDQIGGVYTTRTGQKSFLNFGFNYHKGKNFDYILNASGALNGSSQNKQSYLKGALGNEGDGGFKVRPNPKANNENIGYVNATSNDPAYTWSQADYLYWNTLIPDVNQGGRAYAYDGQSYDFDRAQTGYISNYDFSVSGNINDRVYLGLTLGLKDVHYKAYSEYVEMWTGDLGSVRYANDQKITGSGFDVTAGVIVRPVAESPFRVGAYVKTPTWYDLTTENYTSINYSLKPGAGGTYSRGKIGNTYNYKIWTPWKFGFSLGHTVGNYLALGASYEYEDYSRINSRINDGGYYDYYYDEYYDSSSPDKKMNSHTKKALKGVSTLKLGIEYKPVSNLALRAGYNYVSAAYGNEAQKGTTVPSLGTSYTSTTDYTNWKAINRFTLGLGYQIQKFNIDLAYQYSAQEGDFYPFSSMKNIPVPTTDAATGKTTNVLVSNVATGTKIKNNRSQLLLTLGYRF
>NC_015311.1|WP_013672119.1|2750085_2750751_+|cyclic-nucleotide-binding-domain-containing-protein
MLQLYNKLLELPLFIGISTDELSDIVEHTKFGFHKLTAGRPLVGKDEKCIQLFFLMSGILRVISYADSHRYCIEEEMKSPSVIQPELLFGLMQRYTKDFVAQTDCSLLSLDKQEVLRLLDNHLIFRLNFLNSISMLAQRMGRIPWRRQSDGIRQQFVDFLRLRCLTQAGPKVVKIRMEDLAHELHQSRLNVSRMLNGMQHEGLLSMSRGVLTIPQLEALRD
>NC_015311.1|WP_013672118.1|2748955_2749972_+|FAD:protein-FMN-transferase
MNKKKLYWQVPFLLVLLIGSIAIVRCQHAMPYQHNTGFVFGTVYHITYQSNEDLQPQIDAELKKVNETFSTFDAGSMISQINRNKPVKVNSMFDEVFTLAEEVSKDTDGAFDITVAPMVNMWGFGFKTGQHPSKEKIDSLRRIVGYKKVELVGNSIRKQDRRTMLDCSAIAKGYGSDVVARLLRRNGIENFMVEIGGEIVTKGNSEQRLPWKIGVTKPTDDSLNTNQELETVLNVTDKAMATSGNYRNFYYKGGKKYAHTIDPKTGYPVQHSLLSATVLAKNCATADAYATSFMVMGIEKARRLLARHPELMAYFIYSDARGKLMVWYSPSMKGKVVE
>NC_015311.1|WP_081457129.1|2748134_2748824_+|hypothetical-protein
MERKRTSLSALLLISILFFLASGTADAQRRASAVKEKEDSTAFFRGIAVGVDVIGPAMRSLASYGQYEALLRLNIKDRYYSVVEAGVGKADKSDETTGTEFKTSALFARVGCDFNMLKNKHDDYRFLVGGRLGYTSFKYDVHSPGIADPIWRTQAAYGVVGNKGSQFWAEVVGGVDARIWGMIRMGWTVRYKLRMAHKADGIGEPWYVPGYGRGGSSRLGATFNILLEL
>NC_015311.1|WP_013672116.1|2747674_2748178_+|hypothetical-protein
MNNSNIRQMTKQIGLFLLFLGGLGGLNSCTEIDCPVTNGVLANYVVQGDTLRDTLTVSAIRENKTDTVLLNRLVKTTKFSLPMSYSGDSDRLRFVFTSKDGLTTVDTVTVGKTNVSHFESVDCSPVFFHTLTSVAATGTRISRIEINNPNVDYDGTKENILIRFTAH
>NC_015311.1|WP_004353437.1|2746632_2747586_+|glycosyltransferase-family-2-protein
MDISVVIPLFNEEESLPELHAWIQRVMNTNGFTYEIIFINDGSTDSSWNVIEELQRKDASHVHAIKFRRNYGKSPALYCGFKAAQGDVVITMDADLQDSPDEIPELYRMITEDKYDLVSGYKQKRYDPLSKTIPTKLFNATARRISGVHNLHDFNCGLKAYRRDVVKNIEVYGEMHRYIPYLAKEAGFAHIGEKVVHHQARKYGKSKFGINRFFNGYLDLLTLWFLTNFGKKPMHVFGLMGSFMFFIGFIAFVWLIVEKCVMLVNGVYGDLLSDHASFFIALVAMVLGTQLFLAGFVGDLISRSNPHRNDYQIEKEI
>NC_015311.1|WP_004353446.1|2758772_2759045_+|hypothetical-protein
MSNKRDLKRTINYICGDLFTEGVAASLYGENHDADNTEAILTSILVMHNNYIRRVSHIEPGMAAKVYFKDLKDKFNKEVNEIVDQINNLV
>NC_015311.1|WP_004353453.1|2759045_2759609_+|acyltransferase
MFQRLSKWLLYDVMGWKKDIRCKLPDKAVICLAPHTSNWDFLIGQLYARAERQQSNFLMKREWFFWPFGTLFRKLGGIPVWRDKHTSMTDRLAGYAVHADRFQLCITPEGTRSLNPDWKKGFYYIALKARLPIHLYGIDYEKKLIQCSKVIRPSGDLEHDMKEIKLYFKNFKGKHPELFTIGESEEE
>NC_015311.1|WP_013672125.1|2759605_2762197_+|hypothetical-protein
MKIRLLCTALAAMSFVNTYAQAGRSTWGKTNYNGTPWVENVSRPNEITEGLQNRHLSVWSSHGRYYDARKGGWKWQRPILFGTTEDLYTQTIVLPYLIPMLEHAGAVVFTPRERDWQKNEVIVDNDGRSSNYKEESLKKKWSDTSVPGFAQHYGSYNDGENPFTAGTARQVKARKRNSKISSVIYQPTIPESGRYAVYVSYQTQKKSVDDAEYIVFHKGQETHFRVNQRMGGGTWVYLGTFDFDKGNSINNSVVLTNHSSHRGIVTADAVRFGGGMGNIVRGGVVSGLPRFLEGARYAAQWAGAPWDIVSKSNGSNDYNDDINSRSLMINWLAGGSCYLPDRKDGKKVPVELSLAIHSDAGVKADGSYFGTLGICTTQQGNSTLGDGISRKTSRLFAEQLVANAKKDIDRTFHVNWATRSVWDRNYSETRLPEVPSAILETLSHQNFPDIRLGQDPNFKFTLARSIYKTILKFEASMHGRQYTVQPLAPDIFKIEYISPGKVRLQWKATGDAGEPTAAPTSYNVYMAIGAGGFDNGVNVRNPYYELELQPGRVYNFKVAACNRGGESFPTETLSALYNEGADKTILIVNAFHRLTSPAVVNTGTEQGFDLEADPGLSYGPVAGWAGRQANFDKSMMGKEGPDALGYGGEELVGKVIAGNDFDYVKEHSEALCHAGKYNIVSCDSKAVEYGEVDLSRYALVDLLLGNEKDDGHSLYYYKTFKPALRQQITKYLNGHGRLLVSGSYLASDMQGSDEQTWLRDNLRISYDGANTDNYNSTVSGMGMSFDVYRTINEQHYGAYTPDNILPADGAFSVLNYADGHGAAVAYKGADNCVFTLSFPFECIKDAPTRSRMMKGIVNYMMSK
>NC_015311.1|WP_004353440.1|2762221_2762560_+|hypothetical-protein
MYKIQANASGTRSIEISDRHLETIRKYSLLSGLVDSNGIVDENILDRLKFNIRGLLESEPGKDRDLLDLCLDVIYNQNMKAIGLGNLVALYRQWAAAHKDADDTDDESLMAE
>NC_015311.1|WP_013672126.1|2762956_2765095_+|YgiQ-family-radical-SAM-protein
MSSNKQNIKPGKQKKRPAAPVRQRQERTDASGKEVKSSRPSRYQLTDFLPTTKKEVELRGWNQLDVILFSGDAYIDHPAFGAAVIGRTLEAAGYKVAIVPQPDWHGDFRDFKKLGRPRLYFGISPGAMDSMVNKYTANRRLRSEDAYSPDGRHDLRPEYPSIVYANILRQLYPDVPIVLGGIEASLRRLTHYDYWKDCLRKCILCDAHADMIIYGMGEKQVVSIAKELENGVSVKDLKYIPQTVYLCKESDIPGGIKEEDIVLHSHEACLHNKKYQAENFRYIEEESNKKHAERILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPAYEMIKHSVNIHRGCFGGCAFCTISAHQGKFISCRSKESILKEVKQVMEMPDFKGYLSDLGGPSANMYGMAGRNQRACEHCKRPSCVNPEICPNLETDHTRLLEIYHAVDELPGIKKSFIGSGVRYDLLLHRSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLKLMRKPSFQQFYAFKKIFDRINREEGLRQQIIPYFISSHPGCQEEDMAELAVLTKDLDFHLEQVQDFTPTPMTVSTEAWYTGYDPYTLEPIFSAKTPKEKLAQRQFFFWYKPEARRDIERELKRIGRSDLISKLYDNSPKYHPRAVYDPKAVGSTPETADMKQHRKQEEKAAGTHRKSDRHNGGRHKSFNPNFPANRRRRQR
>NC_015311.1|WP_004353470.1|2765260_2766826_+|acyl-CoA-carboxylase-subunit-beta
MSKQTEKIKALVEKRELARLGGGQKAIDKQHERGKYTARERIEMLVDKGSFEEYDMFKLHRCHNFGMEKKQFLGDGVVAGSATIDGRLVYLYAQDFTVNGGSLSETMAQKICKVMDMAMTNGAPVICMNDSGGARIQEGISALAGYGEIFERNILASGVIPQISSILGPCAGGAVYSPALTDFIIMKEQTSYMFLTGPKVVKTVTGEDIDAEHLGGASVHASKSGVTSFTAKTEEDAMELIKKLLSYIPSNNREEAPRVECTDPIDRKEDLLNEIIPDDPNQAYDMYKVIQAVTDNGEFFEVQPKFAKNIITGFARFNGQSVGIVANQPSAYAGVLDVNASRKGARFVRFCDAFNIPIVSLVDVPGFLPGTGQEYNAVILHGAQLLYAYGEATVPKITITLRKSYGGSHIVMGCKQLRSDLNFAWPSSEIAVMGASGAVAVLCGKEARQVKEQGGDVKQFLAEKEEEYSEKFANPYQAAQFGYIDDVIEPRNTRFRICRGLAQLAHKKQDLPAKKHGCMPM
>NC_015311.1|WP_004353503.1|2767003_2767432_+|biotin/lipoyl-binding-protein
MKEFKYTIDGKEYKVEIGEINAENVAEVTVNGEQYSVQMEKAAEPEKKKVELGKPAAAEENDEAAPAAAINSSAAVKAPLPGTITSVEVTVGQDVKAGDTVVVLEAMKMQNSIEAEKDGKVTAIAVKVGQAVLEDDPLVVIE
>NC_015311.1|WP_013672129.1|2768130_2769168_-|UDP-glucose-4-epimerase-GalE
MKQTILVTGGTGFIGSHTSVELIEAGYDVVIVDNLSNSKIEVLDGIEKITGVCPAFEQVDLRDREATENVFRKYPKIEGIIHFAASKAVGESVQKPLLYYRNNIISLVNLLELMPAYGVKGFIFSSSCTVYGQPKPENLPVTEDAPHQKATSPYGNTKEINEQIILDYIHSGADIKSIVLRYFNPIGAHPTALIGELPNGVPNNLIPYVTQTAMGIRKELTVFGNDYNTPDGTCIRDYIYVVDLAKAHVAAMARVLDQDTDKIEYFNIGTGRGNSTKEIVETFEKATGVKLNWKYGPRREGDIEKIWGDCTKANTVLGWKAETPLTDVLASAWKWQKKLRADGVM
>NC_015311.1|WP_013672130.1|2769340_2769787_+|hypothetical-protein
MTETEQTRQQIERFLKKVAQKFMASGCDMPMTDIHLRASQDSGDLMAFDDSDNEITRCVIDQWIDNKSDDFYQEATVVLRSELNRMRDTVENLSVMKPYSFILEDDDRNNVAELYLVDDDLVIIGGDLMQGLDKELDSFLDDILKEEE
>NC_015311.1|WP_013672131.1|2769783_2771040_+|DUF5103-domain-containing-protein
MKKVLLSFIFGLALPCAVSAQRHEITDGNIRSLQVTADQKWQELPITILNAGKISIDFDDLTHTYRRMTYRLEHCEADWQPSTGLFDSDVAEGFLSGNTIDDVKESTLTNTLYTHYHLDIPNSKCRPRLSGNYRLSVYDDNFADQPLLTACFMLTEPVEHSMGVRLAITTQTDRTINDRHQQVDMQIDYGNYTVSNPQRQIRTVVMQNRNWLDARWNSKPQYVMPDGLRWTHNQDYIFCAGNEYRKFEILSTDAASMGIDRISWDGKDYHVYPFATSPFLNYVYDEDADGAFLIRNSDNTDVNTTSDYVQTHFRLNVPAPYPCRLYLDGDWTCNRLLPAYEMSYQPEGKYYEAVVPLKFGYYNYQFLTADEHGKLSSFRVDSCHYQTENSYQALVYFRPQGGRTDRLVGYAHVKYIKK

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Crispr_ID: NC_015311_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015311_9

2808033-2811108

TypeIII

Consensus_repeat	Method
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	PILER-CR
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CRISPRCasFinder
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CRT

42 spacers

cas2,PrimPol,cas1,csx1,csm3gr7,csx19,csx10gr5

The CRISPR arrays of NC_015311_9

>merge|NC_015311|9|2808033-2811108|PILER-CR,CRISPRCasFinder,CRT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTAACGACGGTTTCGCCGTCGTTGTTAAGCTCTGCACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGTTTTTGGATCTTCGACCCGAACTTTTTTTTATTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACATCCTGATTCTCAACCTTATTAGGTTTTTTGGATCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCGAGGGCTTAAAGGGTTATATTAATTTCGGCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCCTTGTTTTACTCTCATAATTAACTTTGTAAAAGTACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCATAATTAACTTTGTAAAAGTAAGCGTACCGCCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTGGAAATGCCCACACCAAAATAATGTCGTGACAAATAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTGCAGCGAATAACTCGTCCATGCTATCATAGTTCTGGCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGCTGTTTTTGCCTAACATATCGGGAAAGGCTTAAATACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCGCGCGTGTCTCCTTGTTGTCGCAAAAAGCCAAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCACCCCGACACTCATCAACGAGTGGATGTCGGACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAAATATATATTGTTGCAATAAGTCAAAGATGGACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAAGATTTCCCATATAATTGCAATTTTTGGTTACCGAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAAGAGAATTTATTCTGCTCTGTAATTGGTAAAATCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAATGCTTGCTTTTTTTGTCCCTAAAGCAGTTTGTAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGAGCCTCTAATCAAACTTCCCATATAATTGCAATCTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTTGCAAAACTCCCCGCTGTGTCGCTTACATAATAGTGCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAGTTTATTTCCGTTGTTATCAACTCCCTTAACTTTCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGACGAGACACCACGCTTCATTTATTCTAAACGAAAGCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCTATGTCATGCGTGTACTTTTCGCAAGTAGTGTACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTATGTTTTTTTTAAGTCTTGTAGATTCATGACTTTACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACATCACTACACTCTTTATATGTTTTTTTTAAGTCTTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACACCTTCCTGGCCTCGCTTGATGAAGACTTCCTTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGGCTTGCTTAAAGGTCATGTAGACAGGGGTGTTGTATCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCCGCACATTGTTTACTTGCTGTAAGTTCTGTTAAGTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACGATTTGTTGAGTTCGTTTGCCGTGCAGATTGTTACCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCACGCTTTAAGCAAGCAGCGAAACTTTCGCCTGTACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTTTCTTAAAGATTTTTTTTCTTTGTCAGTGCAGTCCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCTTATTTGCCACAACCAAAGCAGACTCCTTTGGCTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTTCAGAGCCTCCTTGAATTCCTTAGAGTTTTGATCCCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAAAGGGCATACGCTCTCTTAGACATTCTTATCGCCACCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCTAAGTAAATATTTCATAATTATAGTTATTATAGTTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACACAATTCCTTTTACTTCTACCCCAGGTAAAAGTACTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACAATCTCTTCAAATTCTTTCTCATCACCCTTGAAGAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTTGTTTTTCTCTGCGAAGTCAACTGCCTCTTGGAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCGAAGGCATCACAGCATTACGCACAAGCTGTCTAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCCGTATTTAAGAGCGATAAGAATATCGTTTTTCTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCATCGGAGAAAAACGTTTTCTCATTCACGCGCTCCACTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCAGAGTAATAAGAGTAATAAATGAAACCGCCAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTCAGAGTAATAAGAGTAATAAATGAAACCGCCAACTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACCTCTGATATGTAGTCATTGGGAATTTCATTGTAGCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGACTTTTTCATGCTAAGTCTGACCCTTATTCTAAGATTCTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC

>NC_015311|9|4|2808033-2811108|PILER-CR
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TAACGACGGTTTCGCCGTCGTTGTTAAGCTCTGCA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GTTTTTGGATCTTCGACCCGAACTTTTTTTTATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCCTGATTCTCAACCTTATTAGGTTTTTTGGATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCGAGGGCTTAAAGGGTTATATTAATTTCGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCTTGTTTTACTCTCATAATTAACTTTGTAAAAGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCATAATTAACTTTGTAAAAGTAAGCGTACCGCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGGAAATGCCCACACCAAAATAATGTCGTGACAAATAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGCAGCGAATAACTCGTCCATGCTATCATAGTTCTGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GCTGTTTTTGCCTAACATATCGGGAAAGGCTTAAATA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGCGCGTGTCTCCTTGTTGTCGCAAAAAGCCAAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACCCCGACACTCATCAACGAGTGGATGTCGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAATATATATTGTTGCAATAAGTCAAAGATGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGATTTCCCATATAATTGCAATTTTTGGTTACCGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGAGAATTTATTCTGCTCTGTAATTGGTAAAAT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATGCTTGCTTTTTTTGTCCCTAAAGCAGTTTGTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GAGCCTCTAATCAAACTTCCCATATAATTGCAATCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGCAAAACTCCCCGCTGTGTCGCTTACATAATAGTG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AGTTTATTTCCGTTGTTATCAACTCCCTTAACTTTC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GACGAGACACCACGCTTCATTTATTCTAAACGAAAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTATGTCATGCGTGTACTTTTCGCAAGTAGTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TATGTTTTTTTTAAGTCTTGTAGATTCATGACTTTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCACTACACTCTTTATATGTTTTTTTTAAGTCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACCTTCCTGGCCTCGCTTGATGAAGACTTCCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GGCTTGCTTAAAGGTCATGTAGACAGGGGTGTTGTATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCGCACATTGTTTACTTGCTGTAAGTTCTGTTAAGT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GATTTGTTGAGTTCGTTTGCCGTGCAGATTGTTAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACGCTTTAAGCAAGCAGCGAAACTTTCGCCTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTCTTAAAGATTTTTTTTCTTTGTCAGTGCAGTCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTTATTTGCCACAACCAAAGCAGACTCCTTTGGCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTCAGAGCCTCCTTGAATTCCTTAGAGTTTTGATCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAAGGGCATACGCTCTCTTAGACATTCTTATCGCCAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTAAGTAAATATTTCATAATTATAGTTATTATAGTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACAATTCCTTTTACTTCTACCCCAGGTAAAAGTACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATCTCTTCAAATTCTTTCTCATCACCCTTGAAGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGTTTTTCTCTGCGAAGTCAACTGCCTCTTGGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGAAGGCATCACAGCATTACGCACAAGCTGTCTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCCGTATTTAAGAGCGATAAGAATATCGTTTTTCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CATCGGAGAAAAACGTTTTCTCATTCACGCGCTCCACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTCTGATATGTAGTCATTGGGAATTTCATTGTAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTTTCATGCTAAGTCTGACCCTTATTCTAAGATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC

>NC_015311|9|8|2808033-2811108|CRISPRCasFinder
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TAACGACGGTTTCGCCGTCGTTGTTAAGCTCTGCA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GTTTTTGGATCTTCGACCCGAACTTTTTTTTATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCCTGATTCTCAACCTTATTAGGTTTTTTGGATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCGAGGGCTTAAAGGGTTATATTAATTTCGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCTTGTTTTACTCTCATAATTAACTTTGTAAAAGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCATAATTAACTTTGTAAAAGTAAGCGTACCGCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGGAAATGCCCACACCAAAATAATGTCGTGACAAATAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGCAGCGAATAACTCGTCCATGCTATCATAGTTCTGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GCTGTTTTTGCCTAACATATCGGGAAAGGCTTAAATA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGCGCGTGTCTCCTTGTTGTCGCAAAAAGCCAAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACCCCGACACTCATCAACGAGTGGATGTCGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAATATATATTGTTGCAATAAGTCAAAGATGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGATTTCCCATATAATTGCAATTTTTGGTTACCGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGAGAATTTATTCTGCTCTGTAATTGGTAAAAT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATGCTTGCTTTTTTTGTCCCTAAAGCAGTTTGTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GAGCCTCTAATCAAACTTCCCATATAATTGCAATCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGCAAAACTCCCCGCTGTGTCGCTTACATAATAGTG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AGTTTATTTCCGTTGTTATCAACTCCCTTAACTTTC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GACGAGACACCACGCTTCATTTATTCTAAACGAAAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTATGTCATGCGTGTACTTTTCGCAAGTAGTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TATGTTTTTTTTAAGTCTTGTAGATTCATGACTTTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCACTACACTCTTTATATGTTTTTTTTAAGTCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACCTTCCTGGCCTCGCTTGATGAAGACTTCCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GGCTTGCTTAAAGGTCATGTAGACAGGGGTGTTGTATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCGCACATTGTTTACTTGCTGTAAGTTCTGTTAAGT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GATTTGTTGAGTTCGTTTGCCGTGCAGATTGTTAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACGCTTTAAGCAAGCAGCGAAACTTTCGCCTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTCTTAAAGATTTTTTTTCTTTGTCAGTGCAGTCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTTATTTGCCACAACCAAAGCAGACTCCTTTGGCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTCAGAGCCTCCTTGAATTCCTTAGAGTTTTGATCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAAGGGCATACGCTCTCTTAGACATTCTTATCGCCAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTAAGTAAATATTTCATAATTATAGTTATTATAGTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACAATTCCTTTTACTTCTACCCCAGGTAAAAGTACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATCTCTTCAAATTCTTTCTCATCACCCTTGAAGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGTTTTTCTCTGCGAAGTCAACTGCCTCTTGGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGAAGGCATCACAGCATTACGCACAAGCTGTCTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCCGTATTTAAGAGCGATAAGAATATCGTTTTTCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CATCGGAGAAAAACGTTTTCTCATTCACGCGCTCCACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTCTGATATGTAGTCATTGGGAATTTCATTGTAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTTTCATGCTAAGTCTGACCCTTATTCTAAGATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC

>NC_015311|9|1|2808033-2811108|CRT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TAACGACGGTTTCGCCGTCGTTGTTAAGCTCTGCA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GTTTTTGGATCTTCGACCCGAACTTTTTTTTATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCCTGATTCTCAACCTTATTAGGTTTTTTGGATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCGAGGGCTTAAAGGGTTATATTAATTTCGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCTTGTTTTACTCTCATAATTAACTTTGTAAAAGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCATAATTAACTTTGTAAAAGTAAGCGTACCGCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGGAAATGCCCACACCAAAATAATGTCGTGACAAATAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TGCAGCGAATAACTCGTCCATGCTATCATAGTTCTGG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GCTGTTTTTGCCTAACATATCGGGAAAGGCTTAAATA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGCGCGTGTCTCCTTGTTGTCGCAAAAAGCCAAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACCCCGACACTCATCAACGAGTGGATGTCGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAATATATATTGTTGCAATAAGTCAAAGATGGA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGATTTCCCATATAATTGCAATTTTTGGTTACCGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAGAGAATTTATTCTGCTCTGTAATTGGTAAAAT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATGCTTGCTTTTTTTGTCCCTAAAGCAGTTTGTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GAGCCTCTAATCAAACTTCCCATATAATTGCAATCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGCAAAACTCCCCGCTGTGTCGCTTACATAATAGTG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AGTTTATTTCCGTTGTTATCAACTCCCTTAACTTTC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GACGAGACACCACGCTTCATTTATTCTAAACGAAAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTATGTCATGCGTGTACTTTTCGCAAGTAGTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TATGTTTTTTTTAAGTCTTGTAGATTCATGACTTTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ATCACTACACTCTTTATATGTTTTTTTTAAGTCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACCTTCCTGGCCTCGCTTGATGAAGACTTCCTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GGCTTGCTTAAAGGTCATGTAGACAGGGGTGTTGTATC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CCGCACATTGTTTACTTGCTGTAAGTTCTGTTAAGT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	GATTTGTTGAGTTCGTTTGCCGTGCAGATTGTTAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CACGCTTTAAGCAAGCAGCGAAACTTTCGCCTGTA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTCTTAAAGATTTTTTTTCTTTGTCAGTGCAGTCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTTATTTGCCACAACCAAAGCAGACTCCTTTGGCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTCAGAGCCTCCTTGAATTCCTTAGAGTTTTGATCC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AAAGGGCATACGCTCTCTTAGACATTCTTATCGCCAC
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCTAAGTAAATATTTCATAATTATAGTTATTATAGTT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	ACAATTCCTTTTACTTCTACCCCAGGTAAAAGTACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	AATCTCTTCAAATTCTTTCTCATCACCCTTGAAGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTGTTTTTCTCTGCGAAGTCAACTGCCTCTTGGAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CGAAGGCATCACAGCATTACGCACAAGCTGTCTAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCCGTATTTAAGAGCGATAAGAATATCGTTTTTCT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CATCGGAGAAAAACGTTTTCTCATTCACGCGCTCCACT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	CTCTGATATGTAGTCATTGGGAATTTCATTGTAG
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC	TTTTTCATGCTAAGTCTGACCCTTATTCTAAGATT
CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015311.1\|WP_013672152.1\|2805989_2807006_+\|VirE-domain-containing-protein	PrimPol	pfam08800_PrimPol_CAS-I:CAS-III	gnl\|CDD\|370131
NC_015311.1\|WP_004354482.1\|2822622_2823009_-\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
NC_015311.1\|WP_013672151.1\|2804885_2805878_+\|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|376633
NC_015311.1\|WP_025068247.1\|2814846_2815656_+\|glycogen-synthase	unknown	unknown	gnl\|CDD\|377972
NC_015311.1\|WP_013672157.1\|2817450_2820024_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NC_015311.1\|WP_013672159.1\|2822113_2822464_+\|DUF4491-family-protein	unknown	unknown	gnl\|CDD\|379717
NC_015311.1\|WP_004354716.1\|2815768_2817187_+\|DUF4270-domain-containing-protein	unknown	unknown	gnl\|CDD\|379464
NC_015311.1\|WP_013672148.1\|2799442_2801821_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_015311.1\|WP_004354722.1\|2817176_2817308_+\|hypothetical-protein	unknown	unknown	unknown
NC_015311.1\|WP_044112579.1\|2799028_2799439_+\|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0144_csx19_CAS-III-D	gnl\|CDD\|275216
NC_015311.1\|WP_013672154.1\|2811258_2813208_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NC_015311.1\|WP_004354715.1\|2813473_2813818_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NC_015311.1\|WP_013672158.1\|2820180_2821926_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NC_015311.1\|WP_013672145.1\|2796199_2797648_+\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	unknown
NC_015311.1\|WP_013672150.1\|2803086_2804781_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_015311.1\|WP_013672156.1\|2813819_2814677_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NC_015311.1\|WP_013672144.1\|2795643_2796195_+\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_015311.1\|WP_036854338.1\|2807328_2807799_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_015311.1\|WP_013672146.1\|2797662_2799048_+\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NC_015311.1\|WP_013672149.1\|2801827_2803078_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|274040

Protein	Function_ID	Function_description	E-value
NC_015311.1\|WP_013672152.1\|2805989_2807006_+\|VirE-domain-containing-protein	gnl\|CDD\|370131	pfam08800, VirE_N, VirE N-terminal domain. This presumed domain is found at the N-terminus of VirE proteins.	9.5195e-20
NC_015311.1\|WP_004354482.1\|2822622_2823009_-\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	7.862e-41
NC_015311.1\|WP_013672151.1\|2804885_2805878_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.01423e-76
NC_015311.1\|WP_025068247.1\|2814846_2815656_+\|glycogen-synthase	gnl\|CDD\|377972	pfam08323, Glyco_transf_5, Starch synthase catalytic domain.	6.94412e-47
NC_015311.1\|WP_013672157.1\|2817450_2820024_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_015311.1\|WP_013672159.1\|2822113_2822464_+\|DUF4491-family-protein	gnl\|CDD\|379717	pfam14898, DUF4491, Domain of unknown function (DUF4491). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 107 amino acids in length. There is a conserved EYY sequence motif.	1.31503e-52
NC_015311.1\|WP_004354716.1\|2815768_2817187_+\|DUF4270-domain-containing-protein	gnl\|CDD\|379464	pfam14092, DUF4270, Domain of unknown function (DUF4270). This family of lipoproteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 444 and 534 amino acids in length.	4.01705e-95
NC_015311.1\|WP_013672148.1\|2799442_2801821_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	5.2238e-69
NC_015311.1\|WP_044112579.1\|2799028_2799439_+\|TIGR04423-family-type-III-CRISPR-associated-protein	gnl\|CDD\|275216	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family. Members of this protein family occur only in species with CRISPR systems, in the context of type III systems that resemble type III-A (MTUBE) and III-B (the RAMP module). It occurs in several species of Prevotella, Helicobacter, Campylobacter, and Bacteroides.	8.11733e-58
NC_015311.1\|WP_013672154.1\|2811258_2813208_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_015311.1\|WP_004354715.1\|2813473_2813818_-\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	8.10128e-78
NC_015311.1\|WP_013672158.1\|2820180_2821926_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_015311.1\|WP_013672149.1\|2801827_2803078_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|274040	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.	9.21927e-42
NC_015311.1\|WP_013672150.1\|2803086_2804781_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	9.23337e-58
NC_015311.1\|WP_013672156.1\|2813819_2814677_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.75294e-143
NC_015311.1\|WP_013672144.1\|2795643_2796195_+\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.77859e-13
NC_015311.1\|WP_036854338.1\|2807328_2807799_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.98934e-10
NC_015311.1\|WP_013672146.1\|2797662_2799048_+\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.00091e-15

>NC_015311.1|WP_036854338.1|2807328_2807799_+|CRISPR-associated-endonuclease-Cas2
MRKAIPYIEILRKLSRAGVQKSPVINRRTGDFSCLPTLQERVDFLMGIVNRPIRSATNMLFFVMYDIESDKVRYHIAKYLERKGCTRIQRSIFLADLDKSVYDEIKSDLAEVQSLYDNHDSIIVCPVSTDQIRAMQIIGEDISIDVIIRSRNTLFF
>NC_015311.1|WP_013672152.1|2805989_2807006_+|VirE-domain-containing-protein
MLLFGTNIQSTADELRKVQEAYLYNSLRNPKPAIAAAVRQLRIVYSMDAKGYAQLKRRLPYFVCGQFNPAFRRKENFAYTESFILDFDHLSAKRLSLKTVREDIIRDEQVMMCFASPSEDGLKVMFRLKERCYDAGLYSIFYKAFAATFAMRHNLTQVTDGRTSDVARACFVSIDPDAYYNPDAIPVDMKAYIDEADPDTVFKMKHEQDEHDKVTRKSDDGQASRPKDPDKEVLARIRRQLNPNARQQSDPPPAYVPERLNEIIADLKCFIEATGLQVTEIINIQYAKKIRARLGQKEAEINLFYGKRGFSIVVSPRLGTNEELNELLAGLVGNFLEK
>NC_015311.1|WP_013672151.1|2804885_2805878_+|CRISPR-associated-endonuclease-Cas1
MELILNTYGVSLNRDNEGFVISTSDGKQRIPAVGIDSIQISRGAQITSDAVMLAVEHEIEVMFMDRTGKPIGRIWSPKYGSISTIRKGQLNFVYSHRAVDWIKEVLLRKIENQQALMMLFDTSDHTDEPTEKNVARLEDYRNKIRVLDGDIVNDIAPMLRGWEGQASRIYFSTINAFLPEQFRFNVRSQHPALDVANAFLNYGYGILYGRIEGALIKAGVDPYIGVLHRDDYNRPVLVYDVIEMYRIWVDYVVYTLLAQNVITEEFYSVREDGSYWLEALGRRVLIQSLNDYMDEVVTVKGTTRSRLTQLTLYVQSLAQKFKEETKTVKR
>NC_015311.1|WP_013672150.1|2803086_2804781_+|TIGR02221-family-CRISPR-associated-protein
MARKLFISVLGTGLYEKGVYTQGPFRSSETRFIQQATLELIGCKETWTENDEICILLTEKAQELNWNATSRKRPHSDDMIPYKGLNTLLQQMELLPKIHPVPILNGKDENEMWKIFQTIFSQIQEGDELYFDLTHSFRYLPMLVLVLGNYAKFLKNVHIAHISYGNYEARNEKGSPIVDLLPLTVLQDWTFAAADFLRNGHSEHLVHLTTQVYGPILSETQGRDEQAKNLKTFSKLLQTITNNLQMCRGLSITQDRDISDLRHIIGELSEDIIKPLIPVVDKIEQSFSDFADEADITNGLCAAKWCYDNQMYQQAITILQETVVTYICQLSGLSITDKNARSLVNAAFHIVANRKQQAEDSWKLPPFGKEDEALNEVRKLISLPLVTELSSSFMVATDIRNDFNHAGFRNNPMKAEGIISKIGERIEKVNGIVLSGNSHQTARPVFTFLNLSNHPLSTWSSAQLAAAKEYGGLEEMPFPDISPELSAGDVQAMATAYVDDILKHYPARGLTVHVMGEMTFCYHVARQLKEAGVCCVASTSERIVEELDGDRKLAQFSFVRFREY
>NC_015311.1|WP_013672149.1|2801827_2803078_+|TIGR02221-family-CRISPR-associated-protein
MSKILISFLGTGALKTGTGNNAPSSSERQYRTTRYHFNNGDIKEHTFVAAALAEHSNIDKIILIGTVHSMWEEVYRYFTERDGKQLDEDKYFEILEHCDKAGHSSSLDIPYKKLIERSIGKDAQIILIKYGITDEEIQENINTVLAIEEELNEKDELVVDITHSFRSLPILLMNLLIYLQTVSRKDIRISHVYYGMMEVSKELGYTPVTELGSMLDISKWITGAYAFENYGNAYQIADLIESENKSVSERLRRFSNLMNLNHLGLLQKEVKNLKAIRNTKYRSLIPGFIITPIINTFIEQFGDISSHALFQLRLAKWQCEHCNYTAAYISVIESIITYACEINHKPWEDYETREEAKKALRENTSSWKIDAGLTDIFRKANSVRNCLAHSLETDKKPMRMIDLLKEYLKTLTTIIK
>NC_015311.1|WP_013672148.1|2799442_2801821_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MTYIKSPFNFIPVSDNVYFPDWSGQISHDIPFSDGICGVIHLAITTHTPTFVRNGHTKQDADEKNAVYKSFSNIADRYFIPGTSIKGEVRNILEILSFSKLDVDRRMLFAQREMGKSGLYPIKSTPDAIHCGWLRRKGENYEIRDCGKPYRISHKRLDEYIGRNIMESYFSEKHKLNLNEKIAGYDPKTAVFKYHLMNEAGVPTDNLSFELDKENCTKNSSRRVFVSETGNITGTIVLTGQPDRWTERVTKEEKETPEKTKPKGKYYEFVFADYEDTKKQMVYDLSKETFEHYKFIYQGSDEWKRIKKAIETSQGVPVFFRIEEKGIKDFGMAYLYKLPYERTPYEALPKAHRQNGIDLAQCIFGYTSKDKSLKGRVQFSNAFSEDAQPDEDVTLVLNSPKASYYPIYIRQNGKNGIVTEYSTYNDGTPAGWKRYYIREHTWRNAMDKDKLNTVIHPVKAGAAFHSRITFHNLRPVELGALLSALIYHGTPDCYHSLGQGKPYGFGKTSFHIELDCDNKNNDLEYYMACFEYAMTKELTTLSVSGQLTPWATSGQVVTLLAMASKNVQGSSFEYMTMDMKGSNEFVKAKKAHEYLPPARQILTANIHLKSLYARGEEIYRPMIDAENAEIRESYNRRFDKLLSMPPQEALQNFYELKEELQEKYEKEKNRERRDFYYELKTEWATRLTTLEDAILANKDRQDFLTGIARLLSFLTSYGVWDGRMRKWKKWCAAYDNGRTALTEEEQKTGAAALAELYVNAKKADQKKFKWKEASKILGIEINADNIKDYLKQ
>NC_015311.1|WP_044112579.1|2799028_2799439_+|TIGR04423-family-type-III-CRISPR-associated-protein
MMNINFDLPYEGYLWMSNKNHPCVYCPEALIDRGLFDGHNPFVTEGYLFNHEKGISISIKYVDGRYRIYIDKVKPSDFNSKDTDRLCYLTQRMDHSDALWAEFLRYWTETPDPACHSMNVLEIEKEVFTGFKTKEK
>NC_015311.1|WP_013672146.1|2797662_2799048_+|CRISPR-associated-protein
MKNTYRYRQLARIILETETPLAIGSGNKDIKTDSVVSKDINELPYIPATTLAGLIRHSLPEELQEYWMGFQTKKDGEGSRIILSEGKILSANGNPIDGLNLVKDKITQLCRELPIRQHVRINQQGTAVKNGKFDEEIVPKGVRFCFEIELMAEEGNSGIMDTILSIIQSDGFRIGSGSRSGFGKIEVVGILRRDLDLCVPNELELYLGKSSSLAKEWEGYRPYTPSATKESDCILYTLELRPVDFMFFGSGFGDDRSDMTFVREPVVTWDRGEATVEELERVILIPASSVKGALAHRTAYHYNRLEGVFADKKTAEELEQGTGKENKAVKTLFGSEGDRKGKNKQRGNILFSDVIEKQKAPLEKKVLNHVKIDRFTGGAVDGALFSEEVLYAPGKTFNLELMLRKTAVDEKDGKIVKAFEAALIDLCKGYLPLGGGVNRGNGTFKGKLNKNGEAIYDEYKL
>NC_015311.1|WP_013672145.1|2796199_2797648_+|hypothetical-protein
MEKIQFRCELLSDIVLNDSSATKGKRRSLDFIPGNNFLGIVAAQLYEETDEAAWLIFHSGHVRFGDAHPSANGTRGLRIPAAFFYPKLKGMEDGCYVRHLVEDDAARGMQLRQCREGFCAFGPDHIATQITVDKDFAVKSAYDSDTRRPMDNQIFGYEALCRGLVLLFSIEIDEEAKAYKDAIVKAICGLHHVGRSRSAQYGCVEIAECDFEEAATLQTPLYIGSRQYVAVYADSRLVFFDGYGNSTFRPQPADLGIEHGEIDWGRSQIRTFQYAPWNYKRQAFDADRCGIEKGSVFLVETDCMPPATGTVGCYLTEGFGQVVYNPVFLQGDKEGHSIFQFVKQEKPACEKRGKGVDSSLVRFLRKRKEDAEKQNIIITEVNKFVETNKELFKQDVFASQWGSIRSLAMVYEDEEKLKEIIGSRKQDEEGKGYINHGMAAEKWNQRGRKERLWEFLENEDFKGYLQEAVINLASEMAKICKP
>NC_015311.1|WP_013672144.1|2795643_2796195_+|CRISPR-associated-protein
MTDVRYKITFFSSWHCGSGLAAGADTDELVIKDRDGLPYVPGRTVKGLLREAAAMLTQFMDVPEESIHRLFGQGGDSDSFGCRSDVSFTNATLDKGERDAIISQQLTPHLYRSVASTAIGADGIAKDHSLRKVETTLPCCVYGTVMNVDERDVEVLTHAFRWIKRMGLGRNRGYGRCEITKED
>NC_015311.1|WP_013672154.1|2811258_2813208_+|threonine--tRNA-ligase
MVKITFPDGSVREYEQGVTGYQIAESISPALARDVVSCGVNGVTTELNRPINGDATIALYKFDDEEGKHTFWHTSAHLLAEALQELYPGIQFGFGPAVENGFFYDVMPAAGQTISENDFPRIEEKMRELARKNEPVIRHDVSKADAIKEFTADGQEYKVEHIEQDLEDGTISTYTQGHFTDLCRGPHLVSTGAIKAIKITSVAGAFWRGDAKREQMTRIYGITFPKKKMLDEYLVMLEEAKKRDHRKIGKEMELFMFSDRVGKGLPIWLPKGTQLRLRLQDLLRRLLRPYNYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVYAYKPRSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRPEQVKTEFETNIDIILKVFKTFGFDNYEAQISLRDPNDKEKYIGSDEVWEESEAAIKQACEEKGLKARVELGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPNRFKLEYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLWLTPDQVAILPISEKYNDYAFKVKAYLDAHDLRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQQGGGEQATMTMEAFAERINAEVADQLKTLD
>NC_015311.1|WP_004354715.1|2813473_2813818_-|aspartate-1-decarboxylase
MQIEVLKSKLHCATVTEANLHYMGSITIDEDLLDAANMIAGEKVQIVNNNNGERFETYIIKGERGSGCVCLNGAAARKAVVGDVVIIISYALMDFEEAKTFKPTVVFPKEGNRL
>NC_015311.1|WP_013672156.1|2813819_2814677_-|pantoate--beta-alanine-ligase
MKVFKKIVELQNELFFCRKESRTVGLVPTMGALHDGHASLVKRSVEENDVTVVSVFLNPTQFNDKGDLERYPRTLEADCRLVETCGADYVFAPSVEEIYPEGDNRHFEFPPQSTVMEGAKRPGHFNGVCQIVSRLFYIVRPDRAYFGEKDWQQIAVIKRLVDFIGMKDTIRIVECPIVRDADGLAKSSRNTLLTADERAVAPKIYEALQASVEYARTHSVAETHDKVVADINAVEGLEVEYFEIVDGSTLLEVASWEQSPYIVGCITVYCGKTPVRLIDHIKYRG
>NC_015311.1|WP_025068247.1|2814846_2815656_+|glycogen-synthase
MGKKVLFVNQEIMPYVPETEMSVYGSEMPHVMQEAGYEIRTFMPRWGNINERRGQLHEVIRLSGMNLIIDDTDHPLIIKVASIPQTRIQVYFIDNEDYFQKRPAMTKDELGNDYPDNGERAIFFARGVLETVKKLRWTPDIIHCQGWMSAVIPFYVKTAYKDEPQFAGSKVVTSLFAEQPQGSLGTNFKHCLEFREAKEKCLKKYGDNFDFMELGKLAIDYSDGIIRTSDKASTALVDYARDNAKPLLEHSIDDAGLKEKYSEFYSRLL
>NC_015311.1|WP_004354716.1|2815768_2817187_+|DUF4270-domain-containing-protein
MLAACLGMVSCDDTTDTLGGSLIDNGDRLSIKTDTFSVASETVLAGKVIARSATGYLGRMEDPETMTTVTGNLMSQFHVLSNFELPQKDSIMSRDANNEIIADSCDIRLYYSSYYGDSLSQMKLTAYELDRPVEEGQTFYSDFNPETQGYIRPAAQGGIAEKRSFTLMDYTETDSLRKKKGYARNINIRLNRQYTDKKGVMYNNYGTYLLRKYQEDPSAFRDAYRFLHEICPGFYFKIDGGTGSMAHIQMAQLNIYFKHKEKGKIKEISTNFVSTEEVLQITHFDNDNTRLQQLANESGHTYLKTPAGLFTRLTLPIADIMAGHETDSINAAKIVLYRENNSSSSSYQFEMPKNVVMVPADSLQSFFGNNRLPDNKTSFLATYNSTKNAYVFNNISGIVNLFSHNRNMPEWGKVVIVPVELQTVTQGVGSSQQKKVTKVSHEMGLSSTKLLGNTAGGKNILISVIYSRFNGR
>NC_015311.1|WP_004354722.1|2817176_2817308_+|hypothetical-protein
MADNYLERHREDYEQRKAVWLRKRKHLRKLSKGRLQKPADEAL
>NC_015311.1|WP_013672157.1|2817450_2820024_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MMNQFSPKVSEILSFSREEAERLTSRSVTPEHIMLALLREKTGPVWELFNQWKVDIDSLKKEIEKKIREQTTDTAVPVPDMLLNEQANNILKLAVLEARLQHAQTVDTPHLLLAILHDSSDNGAKKVLEDSGINYNNTVSMLQQCTSQTKNGIGMADEDEMDEDMVSSSPSSGSGSTMTTQASRTKSKTPVIDSFGTDLTVAAAEGKLDPVVGREKEIMRVCEILGRRKKNNPILIGEPGVGKSAIVEGLAQLIVKHLTSPILFDKRVITLDLTAVVAGTKYRGQFEERIRALIKEIEQNPDIIIFIDEIHTLIGAGSSPGSMDAANILKPALARGTIQCIGATTLDEYRNSIEKDGALERRFQKVQVEPTTVDKTLQILENIKDRYEAHHHVVYTDDALKACVKYADRYITDRFFPDKAIDIIDEAGSRVHLQHVKIPQAILDIQKEIETTQEKKQAAVKNQNFELAASFRDRQTELEQTLKNEQEKWQKGDADEKVEISEEDIAGVVSMMTGVPVQRMQEAEGVRLKNMDAELKRVVIAQDAAIDKMVKAIQRNRVGLKDPNHPIGAFMFLGPTGVGKTYLAKRLAEMMFGSSDALIRIDMSEYTESFNTSRLVGAPPGYVGYEEGGQLTEKVRHHPYSIVLLDEIEKAHGNVFNMLLQVLDEGRLTDGNGRLIDFRNTVIIMTSNAGTRQLKEFGQGIGFKATGLNGLSQSEGDKQRARSIIQKSLSKQFAPEFLNRLDEIVTFDQLDLDAIKKIINIELKGLFRRVHELGYKMEITDEAKEFVAIKGYDVQFGARPLKRAIQNYIEDGLCELILSGNIKTADTIVISKEKDRNRLTFDTVSQSEEQGLHHIAE
>NC_015311.1|WP_013672158.1|2820180_2821926_-|phospho-sugar-mutase
MDNNQTLIAQCEGKAKQWLSPAFDKETRSAVEAMISNEDKTELIESFYKDLEFGTGGLRGIMGAGSNRMNIYTVGMATQGFANYLKISFRGKKQISVVVCHDCRNNSRLFAETVANIFSANGIKVFLFEDLRPTPECSFAIRYLKAQAGVNITASHNPREYNGYKAYWEDGAQVLAPHDKGIIDEVAKVKVEDVKFEGDKKLIQIIGEDIDKPYLDQVKTISIDPEVIKHQHDLKIVYTPLHGAGRVMIPRSLALWGFDNVHCVKEQMVKDGNFPTVDRPNPEIAEALTLGLRDAKALDADILMASDPDADRVGMACKNSKGEWVLINGNQTCLIFLWYIITNRQAVGKMKPTDFIVKTIVTTEVIRKIAEKQHVEMRDCYTGFKWIAREIALSEGKQQYIGGGEESYGFLAEDFVRDKDAVSACSLLAEICAYAKDHGKTLYDILMDIYLEYGYSHEFTINVERPGKSGADEIQQMMKNFRSNPPKDLGGSVIDTYKDFQSLEITKTDGSKKKMDMPDTSNVLQWFCTDGTKVSVRPSGTEPKIKFYLEIKDTMKSASDFPACEKRAGEKIEAIKKSLGL
>NC_015311.1|WP_013672159.1|2822113_2822464_+|DUF4491-family-protein
MVLNFEGILLAVSTFLIIGLCHPLVIKTEYYFGTKPWWIWLVSGLSCCAGALFVESIFWSALLGVLGASFLWGIGELLAQEKRVAKGWFPMNPKRRKHYEKFSKDGSLCPICKEDK
>NC_015311.1|WP_004354482.1|2822622_2823009_-|DUF1573-domain-containing-protein
MKKFLLMTLLSVFGLTFAVAQNQAEIKFDKVSYDFGTFQESNPVHKTTFTFTNVGKAPLVINQVIASCGCTIPKYDKRPIAPGQKGSIDVTYNGTGKFPGHFKKSITVRTNGKVEMTRLYIEGVMEGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015311_9	9.11\|2808791\|33\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2808791-2808823	33	NC_015311.1	2204975-2205007	0	1.0

1. spacer 9.11|2808791|33|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to position: 2204975-2205007, mismatch: 0, identity: 1.0

caccccgacactcatcaacgagtggatgtcgga	CRISPR spacer
caccccgacactcatcaacgagtggatgtcgga	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015311_7	7.13\|2704129\|29\|NC_015311\|CRISPRCasFinder	2704129-2704157	29	MG945183	UNVERIFIED: Microviridae sp. isolate 582-1801, complete genome	1297-1325	4	0.862
NC_015311_7	7.25\|2703288\|26\|NC_015311\|PILER-CR	2703288-2703313	26	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	67683-67708	4	0.846
NC_015311_7	7.25\|2703288\|26\|NC_015311\|PILER-CR	2703288-2703313	26	MG214764	Citromicrobium phage vB_Cib_ssDNA_P1, complete genome	1261-1286	4	0.846
NC_015311_7	7.25\|2703288\|26\|NC_015311\|PILER-CR	2703288-2703313	26	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	303429-303454	4	0.846
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	254503-254532	5	0.833
NC_015311_7	7.21\|2704744\|30\|NC_015311\|CRISPRCasFinder,PILER-CR	2704744-2704773	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	133375-133404	6	0.8
NC_015311_7	7.2\|2703284\|30\|NC_015311\|CRISPRCasFinder	2703284-2703313	30	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	67679-67708	7	0.767
NC_015311_7	7.2\|2703284\|30\|NC_015311\|CRISPRCasFinder	2703284-2703313	30	MG214764	Citromicrobium phage vB_Cib_ssDNA_P1, complete genome	1257-1286	7	0.767
NC_015311_7	7.4\|2703437\|30\|NC_015311\|CRISPRCasFinder	2703437-2703466	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	117321-117350	7	0.767
NC_015311_7	7.4\|2703437\|30\|NC_015311\|CRISPRCasFinder	2703437-2703466	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	78365-78394	7	0.767
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	MT778838	Rhizobium phage V1VFA-S, complete genome	82647-82676	7	0.767
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	73639-73668	7	0.767
NC_015311_7	7.9\|2703821\|30\|NC_015311\|CRISPRCasFinder	2703821-2703850	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	294357-294386	7	0.767
NC_015311_7	7.13\|2704129\|29\|NC_015311\|CRISPRCasFinder	2704129-2704157	29	MG945722	UNVERIFIED: Microviridae sp. isolate 2143-1801, complete genome	466-494	7	0.759
NC_015311_7	7.22\|2704821\|31\|NC_015311\|CRISPRCasFinder,PILER-CR	2704821-2704851	31	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	59865-59895	7	0.774
NC_015311_7	7.24\|2704976\|30\|NC_015311\|CRISPRCasFinder,PILER-CR	2704976-2705005	30	MG592654	Vibrio phage 1.284.A._10N.286.55.A5, partial genome	396-425	7	0.767
NC_015311_7	7.24\|2704976\|30\|NC_015311\|CRISPRCasFinder,PILER-CR	2704976-2705005	30	MG592659	Vibrio phage 1.291.O._10N.286.55.F6, partial genome	43491-43520	7	0.767
NC_015311_7	7.2\|2703284\|30\|NC_015311\|CRISPRCasFinder	2703284-2703313	30	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	303429-303458	8	0.733
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	JN698999	Mycobacterium phage Blue7, complete genome	23786-23815	8	0.733
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	NC_042318	Mycobacterium virus Hammer, complete genome	23801-23830	8	0.733
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	68263-68292	8	0.733
NC_015311_7	7.22\|2704821\|31\|NC_015311\|CRISPRCasFinder,PILER-CR	2704821-2704851	31	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	516888-516918	8	0.742
NC_015311_7	7.7\|2703667\|30\|NC_015311\|CRISPRCasFinder	2703667-2703696	30	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	341167-341196	9	0.7
NC_015311_7	7.22\|2704821\|31\|NC_015311\|CRISPRCasFinder,PILER-CR	2704821-2704851	31	NZ_CP011829	Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence	156690-156720	9	0.71
NC_015311_7	7.23\|2704899\|30\|NC_015311\|CRISPRCasFinder,PILER-CR	2704899-2704928	30	NZ_CP048054	Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p2, complete sequence	64151-64180	9	0.7
NC_015311_9	9.6\|2808426\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2808426-2808459	34	NZ_CP024446	Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence	14907-14940	9	0.735
NC_015311_9	9.11\|2808791\|33\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2808791-2808823	33	MN284903	Mycobacterium phage GaugeLDP, complete genome	22011-22043	9	0.727
NC_015311_9	9.30\|2810166\|36\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810166-2810201	36	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	314448-314483	9	0.75
NC_015311_9	9.32\|2810313\|37\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810313-2810349	37	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	61418-61454	9	0.757
NC_015311_9	9.39\|2810824\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810824-2810857	34	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	208138-208171	9	0.735
NC_015311_9	9.39\|2810824\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810824-2810857	34	NZ_CP024774	Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence	72737-72770	9	0.735
NC_015311_9	9.40\|2810895\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810895-2810928	34	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	208138-208171	9	0.735
NC_015311_9	9.40\|2810895\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2810895-2810928	34	NZ_CP024774	Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence	72737-72770	9	0.735
NC_015311_9	9.6\|2808426\|34\|NC_015311\|PILER-CR,CRISPRCasFinder,CRT	2808426-2808459	34	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	240878-240911	11	0.676

1. spacer 7.13|2704129|29|NC_015311|CRISPRCasFinder matches to MG945183 (UNVERIFIED: Microviridae sp. isolate 582-1801, complete genome) position: , mismatch: 4, identity: 0.862

gaataatatgacaaatccttacaaacata	CRISPR spacer
gaataatgtgacaagtccttacaaagaga	Protospacer
*******.******.********** * *

2. spacer 7.25|2703288|26|NC_015311|PILER-CR matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 4, identity: 0.846

ggagcgcagggtgcgtcgccggtcat	CRISPR spacer
ggagcgcagggtgcgtccccgctccc	Protospacer
***************** *** ** .

3. spacer 7.25|2703288|26|NC_015311|PILER-CR matches to MG214764 (Citromicrobium phage vB_Cib_ssDNA_P1, complete genome) position: , mismatch: 4, identity: 0.846

ggagcgcagggtgcgtcgccggtcat	CRISPR spacer
ggcgcgcagggtgcgtcgcctgtcga	Protospacer
** ***************** ***.

4. spacer 7.25|2703288|26|NC_015311|PILER-CR matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.846

ggagcgcagggtgcgtcgccggtcat	CRISPR spacer
gggacgcagggtgcgtcggcggtcaa	Protospacer
**..************** ******

5. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

cacgatg-ccgccgcctgcgtgccctccgtg	CRISPR spacer
-gagatgaccgctgcctgcttgccctccgtg	Protospacer
 . **** ****.****** ***********

6. spacer 7.21|2704744|30|NC_015311|CRISPRCasFinder,PILER-CR matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

ggtaaggagaagattgttgtcagccctatt	CRISPR spacer
tgcaaggaggagattgttgtcaccccttgt	Protospacer
 *.******.************ ****  *

7. spacer 7.2|2703284|30|NC_015311|CRISPRCasFinder matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 7, identity: 0.767

ggaaggagcgcagggtgcgtcgccggtcat	CRISPR spacer
gcggggagcgcagggtgcgtccccgctccc	Protospacer
* ..***************** *** ** .

8. spacer 7.2|2703284|30|NC_015311|CRISPRCasFinder matches to MG214764 (Citromicrobium phage vB_Cib_ssDNA_P1, complete genome) position: , mismatch: 7, identity: 0.767

ggaaggagcgcagggtgcgtcgccggtcat	CRISPR spacer
caagggcgcgcagggtgcgtcgcctgtcga	Protospacer
 .*.** ***************** ***.

9. spacer 7.4|2703437|30|NC_015311|CRISPRCasFinder matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 7, identity: 0.767

gcatgtcattaactatatacttgcttattt	CRISPR spacer
atttgatatgaactgtatacttgcttattt	Protospacer
.. ** .** ****.***************

10. spacer 7.4|2703437|30|NC_015311|CRISPRCasFinder matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 7, identity: 0.767

gcatgtcattaactatatacttgcttattt	CRISPR spacer
atttgatatgaactgtatacttgcttattt	Protospacer
.. ** .** ****.***************

11. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to MT778838 (Rhizobium phage V1VFA-S, complete genome) position: , mismatch: 7, identity: 0.767

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
gacgatgacgccgcctgcgtgctgcccgaa	Protospacer
 ****** **************. .*** .

12. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
acccaggccgccgccggcgtggcctccgtc	Protospacer
  * * ********* ***** *******

13. spacer 7.9|2703821|30|NC_015311|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gatgtcttcaggtaaaacacagattgccat	CRISPR spacer
tgagtcttcaggtaaagctcagattgacct	Protospacer
 . *************.* ******* * *

14. spacer 7.13|2704129|29|NC_015311|CRISPRCasFinder matches to MG945722 (UNVERIFIED: Microviridae sp. isolate 2143-1801, complete genome) position: , mismatch: 7, identity: 0.759

gaataatatgacaaatccttacaaacata	CRISPR spacer
tgttgttttgacaaatacttacaaacata	Protospacer
 . *. * ******** ************

15. spacer 7.22|2704821|31|NC_015311|CRISPRCasFinder,PILER-CR matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 7, identity: 0.774

ttcatcaacaaactctttgaaacgctcaagt	CRISPR spacer
atgagcaacaaactcttcgtaacgctcacgg	Protospacer
 * * ************.* ******** *

16. spacer 7.24|2704976|30|NC_015311|CRISPRCasFinder,PILER-CR matches to MG592654 (Vibrio phage 1.284.A._10N.286.55.A5, partial genome) position: , mismatch: 7, identity: 0.767

ggtatattcattccaatgattgttccctta	CRISPR spacer
ggtattttcaatccaatgattgttgcgcgt	Protospacer
***** **** ************* * .

17. spacer 7.24|2704976|30|NC_015311|CRISPRCasFinder,PILER-CR matches to MG592659 (Vibrio phage 1.291.O._10N.286.55.F6, partial genome) position: , mismatch: 7, identity: 0.767

ggtatattcattccaatgattgttccctta	CRISPR spacer
ggtattttcaatccaatgattgttgcgcgt	Protospacer
***** **** ************* * .

18. spacer 7.2|2703284|30|NC_015311|CRISPRCasFinder matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaggagcgcagggtgcgtcgccggtcat	CRISPR spacer
cctggggacgcagggtgcgtcggcggtcaa	Protospacer
   .**..************** ******

19. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to JN698999 (Mycobacterium phage Blue7, complete genome) position: , mismatch: 8, identity: 0.733

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
accagagccgccgcctgggtaccctccgtc	Protospacer
  *.. *********** **.********

20. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to NC_042318 (Mycobacterium virus Hammer, complete genome) position: , mismatch: 8, identity: 0.733

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
accagagccgccgcctgggtaccctccgtc	Protospacer
  *.. *********** **.********

21. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 8, identity: 0.733

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
gtccgagccgcctcctgcctgccctccgtt	Protospacer
  * . ****** ***** **********

22. spacer 7.22|2704821|31|NC_015311|CRISPRCasFinder,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.742

ttcatcaacaaactctttgaaacgctcaagt	CRISPR spacer
atgattaacaaactcattgaaacgcttacaa	Protospacer
 * **.********* **********.* .

23. spacer 7.7|2703667|30|NC_015311|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

cacgatgccgccgcctgcgtgccctccgtg	CRISPR spacer
gacgatgccgacgccttcgtgcccaagaat	Protospacer
 ********* ***** *******   .

24. spacer 7.22|2704821|31|NC_015311|CRISPRCasFinder,PILER-CR matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ttcatcaacaaactctttgaaacgctcaagt	CRISPR spacer
actagaaactaactccttgaaacgctcaatc	Protospacer
 ..*  *** *****.************* .

25. spacer 7.23|2704899|30|NC_015311|CRISPRCasFinder,PILER-CR matches to NZ_CP048054 (Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p2, complete sequence) position: , mismatch: 9, identity: 0.7

atattgtaggttggttcaaaaagactttcc	CRISPR spacer
ccattgaaggttggtacaaaaagaccgagt	Protospacer
 .**** ******** *********.   .

26. spacer 9.6|2808426|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024446 (Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence) position: , mismatch: 9, identity: 0.735

tcataattaactttgtaaaagtaagcgtaccgcc	CRISPR spacer
tcataattaacttagtaacagtaagaaaaaccaa	Protospacer
************* **** ****** . * *

27. spacer 9.11|2808791|33|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to MN284903 (Mycobacterium phage GaugeLDP, complete genome) position: , mismatch: 9, identity: 0.727

caccccgacactcatcaacgagtggatgtcgga	CRISPR spacer
tgacccgacagacatcaacgagtggatggggcc	Protospacer
.. *******  ****************  *

28. spacer 9.30|2810166|36|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.75

ttcagagcctccttgaattccttagag-----ttttgatcc	CRISPR spacer
accagaacctacttgaattccttagagtaggttttt-----	Protospacer
 .****.*** ****************     ****

29. spacer 9.32|2810313|37|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

tctaagtaaatatttcataattatagttattatagtt	CRISPR spacer
aaaaaggaaatatttcataatgatagttataacattg	Protospacer
   *** ************** ******** *.* *

30. spacer 9.39|2810824|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

tcagagtaataagagtaataaatgaaaccgccaa	CRISPR spacer
gtactgtaataagagtaaaaaaagaaacccggaa	Protospacer
 .*  ************* *** ******   **

31. spacer 9.39|2810824|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024774 (Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence) position: , mismatch: 9, identity: 0.735

tcagagtaataagagtaataaatgaaaccgccaa	CRISPR spacer
gtactgtaataagagtaaaaaaagaaacccggaa	Protospacer
 .*  ************* *** ******   **

32. spacer 9.40|2810895|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

tcagagtaataagagtaataaatgaaaccgccaa	CRISPR spacer
gtactgtaataagagtaaaaaaagaaacccggaa	Protospacer
 .*  ************* *** ******   **

33. spacer 9.40|2810895|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024774 (Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence) position: , mismatch: 9, identity: 0.735

tcagagtaataagagtaataaatgaaaccgccaa	CRISPR spacer
gtactgtaataagagtaaaaaaagaaacccggaa	Protospacer
 .*  ************* *** ******   **

34. spacer 9.6|2808426|34|NC_015311|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 11, identity: 0.676

tcataattaactttgtaaaagtaagcgtaccgcc	CRISPR spacer
gcataattaactttaaaaaagtaagactttattt	Protospacer
 *************. *********  * .  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1644277 : 1654130

Diachasmimorpha_longicaudata_entomopoxvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013671393.1\|1644277_1645996_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.8e-55	30.9
WP_004354768.1\|1646059_1647277_-	YjgP/YjgQ family permease	NA	NA	NA	NA
WP_004354761.1\|1647288_1648416_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.0e-75	42.4
WP_004354798.1\|1648412_1650881_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.6e-152	39.6
WP_013671394.1\|1651011_1651710_-	methyltransferase	M1HV90	Paramecium_bursaria_Chlorella_virus	9.9e-05	30.1
WP_025068028.1\|1651711_1652743_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	1.7e-08	24.3
WP_036857107.1\|1652939_1654130_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	V5LQ39	Emiliania_huxleyi_virus	3.4e-45	32.6

Anti-CRISPR protein detection

Acr_ID: NC_015311.1|WP_004374604.1|1834189_1834606_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_015311.1|WP_009347098.1|2497681_2498092_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_015311.1|WP_004374604.1|1834189_1834606_+|hypothetical-protein

1834189_1834606_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.6083916083916084	1	1.0

NC_015311.1|WP_009347098.1|2497681_2498092_+|hypothetical-protein

2497681_2498092_+

136 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5214285714285715	1	0.9929078014184397

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015311

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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