CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017475	Lacticaseibacillus paracasei plasmid pLC2W, complete sequence	0 crisprs	NA	0	0	3	0
NC_017473	Lacticaseibacillus paracasei, complete sequence	1 crisprs	DinG,WYL,DEDDh,csa3,cas3,csn2,cas2,cas1,cas9	0	13	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 19701

Staphylococcus_phage(60.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002819966.1\|156_441_+	BRCT domain-containing protein	NA	NA	NA	NA
WP_123827222.1\|502_1289_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003606765.1\|1276_1600_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014566439.1\|1955_2834_+	PRD domain-containing protein	NA	NA	NA	NA
WP_014566843.1\|2954_4688_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_003589794.1\|4714_6139_+	6-phospho-beta-galactosidase	NA	NA	NA	NA
WP_003589792.1\|6187_6523_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_123827223.1\|7057_7845_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003586333.1\|8002_8560_-	serine acetyltransferase	NA	NA	NA	NA
WP_003586331.1\|8525_9710_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_012807380.1\|9731_10643_-	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	2.8e-60	41.7
WP_016387670.1\|11386_14554_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.1e-21	22.6
WP_014566850.1\|14567_16184_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-127	50.3
WP_015338155.1\|16180_16807_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.4e-10	30.0
WP_123827224.1\|16874_17661_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014566853.1\|17669_18029_-	hypothetical protein	NA	NA	NA	NA
WP_003582052.1\|18034_18928_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_002816607.1\|19017_19701_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-60	51.8

DBSCAN-SWA_2

24576 : 29755

Enterococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014566862.1\|24576_25413_+	ParA family protein	F0PIG8	Enterococcus_phage	1.1e-37	36.7
WP_014566863.1\|25405_25795_+	hypothetical protein	NA	NA	NA	NA
WP_014566897.1\|25839_26181_-	hypothetical protein	NA	NA	NA	NA
WP_014566865.1\|26173_27466_-	Y-family DNA polymerase	O64031	Bacillus_phage	1.3e-79	39.9
WP_015338164.1\|27462_27846_-	hypothetical protein	NA	NA	NA	NA
WP_003572740.1\|28039_28357_+	hypothetical protein	NA	NA	NA	NA
WP_123796560.1\|28592_29755_-\|transposase	IS3-like element ISL1 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.1e-30	33.2

DBSCAN-SWA_3

35320 : 35572

Lactobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014566870.1\|35320_35572_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	1.5e-35	92.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017473_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017473_1

2287126-2288547

TypeII

Consensus_repeat	Method
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	PILER-CR
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CRISPRCasFinder
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CRT

21 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_017473_1

>merge|NC_017473|1|2287126-2288547|PILER-CR,CRISPRCasFinder,CRT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGACTAACTTCTCGATGGATGTGTTAGGATAATAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAACAACTTGGGATTTGATTGTTAAAGTCATGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTCCATGGTAAAAACCTCCTATTATTTTGTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGTTGCAATCGGTGAAAGTATCGCGATTGCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACACTTGATCATGCAGAAGGATATTGACGAGTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCGACAATCTCCCGACTGATGATATTGGCCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGATGTGTTCTTGTCAAAACATTTTTTGCGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAACATATTGATCAGCCTTTCTTCAACGATCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCCATAAAGTTGCTAATTCTAGAAATATTTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGTCAGCCATAAGCGTGTTAGCCGCTACGAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGAGACCAACACCAGCGCAAGCGAACGCTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCGCGAGTTGATCGCAACGGAAGGCAGTTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCCAGTTGTTTAATGGATAAGCCTCTGATAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTTCGTCTTTAAGCGGTGCTAACCAATTTGGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGGTTTCTTCGTTTACAATCGTGCCGCGATCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGGTCAACTGTTGTGCGGTTTCATCAGTGCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAGTGAGCCGGTGCATATTGCACCGGCTTTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGGTAATGGGTCGTCCGCATTATGATATTCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCAGTAGATAAGATTGTTTTTGTCAAGTTTCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGGGGTGATTTGTTGCATACCCACAATGTCAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCCGTCTAAGCTGTTGTTCTGGAGAAAACAGCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NC_017473|1|1|2287126-2288547|PILER-CR
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAACTTCTCGATGGATGTGTTAGGATAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACAACTTGGGATTTGATTGTTAAAGTCAT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TCCATGGTAAAAACCTCCTATTATTTTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTTGCAATCGGTGAAAGTATCGCGATTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGATCATGCAGAAGGATATTGACGAGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGACAATCTCCCGACTGATGATATTGGCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGATGTGTTCTTGTCAAAACATTTTTTGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACATATTGATCAGCCTTTCTTCAACGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATAAAGTTGCTAATTCTAGAAATATTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTCAGCCATAAGCGTGTTAGCCGCTACGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGAGACCAACACCAGCGCAAGCGAACGCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGAGTTGATCGCAACGGAAGGCAGTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCAGTTGTTTAATGGATAAGCCTCTGATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTCGTCTTTAAGCGGTGCTAACCAATTTGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGTTTCTTCGTTTACAATCGTGCCGCGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGGTCAACTGTTGTGCGGTTTCATCAGTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGTGAGCCGGTGCATATTGCACCGGCTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGGTAATGGGTCGTCCGCATTATGATATTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTAGATAAGATTGTTTTTGTCAAGTTTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGGGTGATTTGTTGCATACCCACAATGTCA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGTCTAAGCTGTTGTTCTGGAGAAAACA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NC_017473|1|1|2287126-2288547|CRISPRCasFinder
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAACTTCTCGATGGATGTGTTAGGATAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACAACTTGGGATTTGATTGTTAAAGTCAT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TCCATGGTAAAAACCTCCTATTATTTTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTTGCAATCGGTGAAAGTATCGCGATTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGATCATGCAGAAGGATATTGACGAGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGACAATCTCCCGACTGATGATATTGGCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGATGTGTTCTTGTCAAAACATTTTTTGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACATATTGATCAGCCTTTCTTCAACGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATAAAGTTGCTAATTCTAGAAATATTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTCAGCCATAAGCGTGTTAGCCGCTACGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGAGACCAACACCAGCGCAAGCGAACGCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGAGTTGATCGCAACGGAAGGCAGTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCAGTTGTTTAATGGATAAGCCTCTGATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTCGTCTTTAAGCGGTGCTAACCAATTTGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGTTTCTTCGTTTACAATCGTGCCGCGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGGTCAACTGTTGTGCGGTTTCATCAGTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGTGAGCCGGTGCATATTGCACCGGCTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGGTAATGGGTCGTCCGCATTATGATATTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTAGATAAGATTGTTTTTGTCAAGTTTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGGGTGATTTGTTGCATACCCACAATGTCA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGTCTAAGCTGTTGTTCTGGAGAAAACA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NC_017473|1|1|2287126-2288547|CRT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAACTTCTCGATGGATGTGTTAGGATAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACAACTTGGGATTTGATTGTTAAAGTCAT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TCCATGGTAAAAACCTCCTATTATTTTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTTGCAATCGGTGAAAGTATCGCGATTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGATCATGCAGAAGGATATTGACGAGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGACAATCTCCCGACTGATGATATTGGCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGATGTGTTCTTGTCAAAACATTTTTTGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACATATTGATCAGCCTTTCTTCAACGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATAAAGTTGCTAATTCTAGAAATATTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGTCAGCCATAAGCGTGTTAGCCGCTACGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGAGACCAACACCAGCGCAAGCGAACGCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGAGTTGATCGCAACGGAAGGCAGTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCAGTTGTTTAATGGATAAGCCTCTGATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTCGTCTTTAAGCGGTGCTAACCAATTTGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGTTTCTTCGTTTACAATCGTGCCGCGATC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGGTCAACTGTTGTGCGGTTTCATCAGTGC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGTGAGCCGGTGCATATTGCACCGGCTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGGTAATGGGTCGTCCGCATTATGATATTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTAGATAAGATTGTTTTTGTCAAGTTTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGGGTGATTTGTTGCATACCCACAATGTCA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGTCTAAGCTGTTGTTCTGGAGAAAACA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017473.1\|WP_012491868.1\|2286142_2286985_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017473.1\|WP_003605793.1\|2285036_2285462_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NC_017473.1\|WP_012491867.1\|2280525_2281383_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NC_017473.1\|WP_012491872.1\|2295674_2296841_-\|hypothetical-protein	unknown	unknown	unknown
NC_017473.1\|WP_003588545.1\|2289528_2290434_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_017473.1\|WP_003580491.1\|2294879_2295674_-\|hypothetical-protein	unknown	unknown	unknown
NC_017473.1\|WP_003566944.1\|2297632_2297956_+\|DUF4870-domain-containing-protein	unknown	unknown	unknown
NC_017473.1\|WP_012491865.1\|2276616_2278065_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NC_017473.1\|WP_003605783.1\|2275923_2276490_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_017473.1\|WP_003588557.1\|2298027_2299755_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NC_017473.1\|WP_003605782.1\|2274214_2275633_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_017473.1\|WP_012491871.1\|2290631_2294717_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NC_017473.1\|WP_003604680.1\|2288571_2289249_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NC_017473.1\|WP_003588552.1\|2297064_2297439_+\|YxeA-family-protein	unknown	unknown	gnl\|CDD\|377665
NC_017473.1\|WP_002816285.1\|2285837_2286089_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|225511
NC_017473.1\|WP_003605791.1\|2283148_2284840_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NC_017473.1\|WP_003586314.1\|2289245_2289551_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NC_017473.1\|WP_014566618.1\|2299735_2301478_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NC_017473.1\|WP_003605790.1\|2281520_2283152_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017473.1\|WP_012491866.1\|2278235_2280074_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919

Protein	Function_ID	Function_description	E-value
NC_017473.1\|WP_012491868.1\|2286142_2286985_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.03773e-142
NC_017473.1\|WP_003605793.1\|2285036_2285462_-\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	4.87983e-33
NC_017473.1\|WP_012491867.1\|2280525_2281383_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.39686e-35
NC_017473.1\|WP_003588552.1\|2297064_2297439_+\|YxeA-family-protein	gnl\|CDD\|377665	pfam06486, DUF1093, Protein of unknown function (DUF1093). This family consists of several hypothetical bacterial proteins of unknown function.	2.98162e-19
NC_017473.1\|WP_003588545.1\|2289528_2290434_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.76359e-89
NC_017473.1\|WP_012491865.1\|2276616_2278065_-\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NC_017473.1\|WP_003605783.1\|2275923_2276490_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.00337e-11
NC_017473.1\|WP_003588557.1\|2298027_2299755_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	7.03579e-159
NC_017473.1\|WP_003605782.1\|2274214_2275633_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.04271e-65
NC_017473.1\|WP_012491871.1\|2290631_2294717_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	5.52985e-120
NC_017473.1\|WP_003604680.1\|2288571_2289249_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	8.55728e-83
NC_017473.1\|WP_002816285.1\|2285837_2286089_+\|IS3-family-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.47634e-08
NC_017473.1\|WP_003605791.1\|2283148_2284840_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.47636e-93
NC_017473.1\|WP_003586314.1\|2289245_2289551_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.69699e-23
NC_017473.1\|WP_014566618.1\|2299735_2301478_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NC_017473.1\|WP_003605790.1\|2281520_2283152_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.53157e-92
NC_017473.1\|WP_012491866.1\|2278235_2280074_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0

>NC_017473.1|WP_012491868.1|2286142_2286985_+|IS3-family-transposase
MCRILGVSRAQYYRYRSPKPSKRRAEDVDLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRHGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKALESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
>NC_017473.1|WP_002816285.1|2285837_2286089_+|IS3-family-transposase
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
>NC_017473.1|WP_003605793.1|2285036_2285462_-|NusG-domain-II-containing-protein
MRWLKKYVRPFDYVIVIVLFVACFLPVGIFSLTEANVNTNQKVAVISIKGHVKRRIQLTTHTRHQQFTLYPAKGQYNIIEVQGARIRDKEDNSPDQIAVHTGWISQVGQQSICLPHKLLIEIKPAQAGTGTSGDTGGLVHP
>NC_017473.1|WP_003605791.1|2283148_2284840_-|ATP-binding-cassette-domain-containing-protein
MLGLLKYGRDQRWAGVIETVFDWLPTLLPIMIALNFAAKRPGNALIITVILVLIWLGYVIGYERHHRHAWAMSAKRELRDHYFEALYQRNNAGDATAADNAVIQRDLGGLNNLDMFYSTLFPTLIQAGLTFLLLIGLSVWYGSWLAFLPLVCVFLIGFAMMFLGKKMSAQNKAHLAGFLRMGGRFMNDLSGMNTLVMYNAADRYAKKFADDSEYFRQATMNLLRTQLQVLFVINGFVYLTVFAGGFVTALQLAAGQLPAAGAFATWFALAMMMVNARQLGYFFHVVKSNGPALAGILATIAKSKTTPATVKITDNRPLKQLVLQDVAIGYEADAPLVSDINATLVPGKLYGLAGENGTGKSTLTQALLGQLTPLSGTIMADNTPVTALSNAQRAAVFGYVAANDYIFSGTIKENLLLGNQFGDQWQQHLDELGLMHFVTDLQDGYATEVGEGGRLLSPGQRQQLAFARMLLADKTVYLLDEMTSSIDAANAAIILAAIKRLSRQKIVLFISHDLSAMAEADVVWFIHDHQLISADHAQLYRDQPAYRHLVDNPEAMLKEGQPS
>NC_017473.1|WP_003605790.1|2281520_2283152_-|ABC-transporter-ATP-binding-protein
MIRSLLRYTHHLTGTIIISFLIGLVAELTKVVVLVLAAMMLFDPQNASHLLIPGIIAVVIVGLGSFGEQYAGHFVAFHVLAELRGAVYRKLMQLAPAKLDSQGSGKLLKLIGSDIEAMEIFYAHTIVPVAIGLIYGVLMVAVYSSLNGPAAAVVLVSYAAVGLLIPYYRHEQMTAKAQAADRQKAVNQQYLLESVRGMAVLRQLEVADARMKTGNEGFDHEATAFQQSQFGQLLKNMSATLVMLLAWLFIVWLSGWTQPQPLQQALLAVFPLTFGPLLALTNLPASLLNGFAAARNLLNLLQEAPATSAAIDATQTLNQIAIIQVDHVTFKYPSRDETVLRQVSLSLHAGEIVGFVGASGSGKSTLAKLIMGWYPLTQGRILIDGIDVTKIDPASLRAQVNYLPQTPVFFSESVRDNLTLHDLTITDAQIWTVLDQVKLTSRLRQAEKGLDENVVSGQLQFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILDTIKAYYHGIVIMISHRAESAAYADRLYRFADHRVSAASTEPK
>NC_017473.1|WP_012491867.1|2280525_2281383_-|PRD-domain-containing-protein
MIIQNVLNNNAVVARHQQREVIVVERGIGFRAKKDAKMALRDSMKVYVPEDQAKLKIATATIASLPSAYLDLAAGIIQEAEKRLQTTFNSYLLIELADHVHFAVQRLHEKIVLHNKLLWEIQVAYTQEYEMGEWALHQIAAQLHEQLPEDEAGFIALKFVSNDLNHQQTVNSLAFTQTLASLTKIIFYNLGLDMNVKTPDYQRLVIHLKFFLQRMYAAAPSPLSLKMENYDYVLLKHLQQDYARAYHCMEDVDRFMQQKLAIAIPKNEQIYLTMHIARLAKSFAE
>NC_017473.1|WP_012491866.1|2278235_2280074_-|PTS-glucose-transporter-subunit-IIA
MNESGLAQQLLNLIGGKQNINQVWHCATRLRFTLKDRAKVPKDKIEALDGVITVVEASGQFQVVIGNNVGDVYHEVVKLEPSLSEGETSGETAAQGKMTFKSAFNSLLTFISGVFTPFLGAMAGAGILKGLLSLAVVMGWLTAKSGAYQIWWAAADGIFYFLPIALAFTAAKQLKVNQFVSMAIAAAMVSPGIVALGAKATTIDFFGIPVVPANYTATVLPILLVVVVQKFLEPVFNKLWHESVRNIMAPLCLLVVIVPLTLIVVGPISATVSSWLATAIVSLNKSVPILAGLVLGGFWQVIVIFGVHWALVPVMMNNIAQNGTDLMMPILLPAVLSQAGAALAVFLRTRDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYLACVAGAVGGMIVAISGAGANAAALASVLSLPTFIGKGFGLSVVGDVVAFALGTVLTYFFGGINAGAKAKTAPSVNSEPGEALAAPVKGVLVPLTGLADEVFASETMGKGVAIVPENGIVKAPVAGVIRLLYPTGHAIGIQSDKGSEILIHIGIDAVNLKGKHFQPLVAQGQHVEIGTPLVQFDHEAIEKEGYESTVMMIVTNSDQYQIATLGQGATDDRPVMTLA
>NC_017473.1|WP_012491865.1|2276616_2278065_-|family-1-glycosylhydrolase
MTYLNFPKNFLWGGATAANQLEGAYQEDGKGLSIADVLPQGKDRFTIVNRPDFNWTIDKSKYRYPNHQGIDHYHRFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEKTPNASGLKFYDEVIATCLKYDIEPVVTISHYEMPLHLVTKYGGWKNKRLIEFYKHFAETVLTRYFKQVKYWMTFNEINSAWAFPVMSQGLVANNGGNDKQTIFQAWHNQFVASAWAVKIGHALDPKLQVGCMLLYATTYGYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDALMADNGFKFTDLDFSAEELTLLKNHPVDYIGFSYYMSAVVETVEKEHAEVGGNLLSGIKNPFLKASEWGWQIDPIGLRIALNQLYERYRKPLFIVENGLGAVDKPDADGKIKDDYRIDYLKQHIEQMGAAIHDGLDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDAGQGSLNRYKKQSFNWYQRVIASNGTDLG
>NC_017473.1|WP_003605783.1|2275923_2276490_-|TetR/AcrR-family-transcriptional-regulator
MDTREKLVATAASLFQKEGVRATGLAQILTVSGTPKGSLYYYFPNGKAQLIEAAITYAGQHILEHVQQDLDRYKAPDAALAGQLESMATEMQEKGHLGGNSISLIALETGDDPELQAACSAVFTQLETLYIKKLTSAGIPPDRAQPLGQFIQASIEGAIILAATKNNPDLLRQTADQLTRLIKLALAA
>NC_017473.1|WP_003605782.1|2274214_2275633_-|multidrug-efflux-MFS-transporter
MQLSQTKEMPQARVHVAHPAMTMIGLMIGAFVGMFSETSLNIALPSLMTALNVSQGTIQWLVTGYMLVIGICMPLSSLLSKWFNTKKIILFALGAFILGSVVSAMGAVFPVVLIGRLIQGIGTGLILPLMFSVAMQIFPPYKLGTVMGMAALVIMFAPAIGPTITGLVLAKFTWHYIFWLFVPFLVLAFIFTLTSMENVYQQTQTPVDWLSIVESSIGFAGIVVGTTMASDAGWLSLEVGLALLVGVIGLVLYARRQLSLTNPMLNLRVFANKQFTVGTLLVMLDFGVILASMYLLPMYLQRVMGLPVAMTGLVMLPGGIVNAAVSAIAGRMYDSHGAKWLSRGGFVIAILGVLILLNSGAQSPLWWIILGHVVLMIGAPLAMSPAQTYGLNSLSGAESADGSALLNTLQQIVGAVSTAVATSMLALGSAKAAGQTGLTIGSHFGFVFVLILAIIGLIVAFQVKKPQASRDL
>NC_017473.1|WP_003604680.1|2288571_2289249_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSEVTVIDTASPKVLTDLIEALRNDLDKVVLSNDQLEPQEIRKASLWIGDPMLELDLDKLFQRLIYKRMELLIENQRLVELIDQSQQMAMYLLQDPFLSDLPVTVEPGGKLEQIMKYCNVHFDEAVTTESTSKIEALIQTLTKLEEKKLVILTNVSHYLSARDFSSVTEQIGDTELQVVLIEFSKVNRKKYFEKCQYIYIDEDFVDNRELD
>NC_017473.1|WP_003586314.1|2289245_2289551_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVLTSENRRNYRKFRKALINEGFLMMQYSIYVRVCSTKKSAEFLEHRIAAMKPPIGTVQTLMVTEAQYQAMHFLVGEAKQDIRNSADRTVII
>NC_017473.1|WP_003588545.1|2289528_2290434_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSLIVTQHCKVTTKNRTLVVQTDGEVNNVPIEDINQVVFTTTRALLSADAITTLAEANAKVIFSGRDGQPVTETTNLYSDRRKADLVRLQVNWPKSLVENLWTKIVAAKVSNQAQVTKLCGFDNQSLLDDLDTLEINDRSNREATAARKYFKLIFGDDFSRSDICATNAALNYGYSILLSTTNRAIVSAGHITEIGMHHSSVANQYNLGSDLMEPFRPAIDYWVANQKFTDLTPNIKYGLIALLNLEVTFNGKKALLQNALDEHVENCLAYLDGKRNNCRIEVEFPNEVSSDAFNDHV
>NC_017473.1|WP_012491871.1|2290631_2294717_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLGKPYGIGVDIGSNSIGFAAVDENSHLIRLKGKTVIGARLFEEGKAAADRRASRTTRRRLSRNRWRLSFLRDFFESHITPTGPNFFMRQKYSEISPKDKARYKYEKRLFNDRTDAEFYQQYPTMYHLRNRLLTDPSKADVREIYFAIHHILKSRGHFLTSGYAKDFNTNKVALNEIFPALQDAYAQVYPDLDITFDENKVNEFKTVLLNEKATPSDTQRALVNLLLAEDGDKDILKQQKQVLTEFAKAVVGLKTKLNVALGTEVDSSEATVWNFSLGQLDDKWAGIESAMTDEGTEILDQIRDLYRARLLNGIVPAGKTLSQAKVDDYAQHHEDLELFKDYLKQLEDDGTAKAIRQLYDRYIDGDDAKPFVREDFVKALTKEVTAHPNAKSPELLERLAQPDFMLKQRNKANGAIPVQMQQRELDQIIKNQSVYYDWLAAPNPVEKHRKSMPYQLDELLNFRIPYYVGPLVTAKEQKAAQGGVFAWMVRKDPDGNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQRYEVLNELNNVRVNNEKLSIEQKQQVIRELFERHNSVTIKQFAENLRAHGDYAHIPEIRGLADEKRFLSSLSTYRQLKSLLPDAIDDPAKQADIENIIAWSTVFEDAAIFKTKLKEINWLDSQTITKLSNIRYRGWGQFSHKFLNGLTLGNGHTIIQELFLSNNNLMQILTDETLQKKMTELNADKLKAANINDAIDDAYTSPSNKKALRQVLRVIEDIKRAADGQDPSWLYVETADGGGTPGKRTRARQHQLQEIYANAAHELIDSAVRGELEDKIADKADFNDRLVLYFMQGGRDIYTGTPLNIDQLSSYDIDHILPQSLIKDNSLDNRVLVHAIINREKNATFASTIYAQKMNATWRQWHEAGLISGRKLRNLQMRPDQIDKYASGFVARQLVETRQIIKLTEQIVAAQYPETKIIAVKAGLSHQLREELEFPKNRDVNHYHHAFDAFLAARIGTYLLKRFPNLQAFFTYGKFKKADVKKLRGFNFIRDITHAEDKIVVKDTGEVIWDKKRDVDELDRIYNFKRMLITHEVHFEKADLFKQTVYGAKDSKEAGGKKQLISKKKGYPVDIYGGYTQETGSYLSVVRLTKKAMYAVVKVSTRDAAKLAVAKSISEQKENETLNDIIDEKLSKISKNGKITHELFEVVLPRVGQKTLFKNSKYNLFLVNSDTYMHNYQELWMPREYQKMWKDISLSKYGDAQTEDQLDQIFGFIVSQVNSYFNLYDINQFRKKLNDAADKFATLPMRDTDDMQGKIATIGQLLIGLQANAARSDLRNLDIKTPLGLLQIPNGISLDSDTSVVYQSPTGLLEREVHLSDL
>NC_017473.1|WP_003580491.1|2294879_2295674_-|hypothetical-protein
MEATKLAKRKQWPVPFSQTEPHFTFNNWLKFFSVVLFTYLLFYTRNPIGGFFNMSGTTFLNVANGWTRAVVVFGGVLYCAIIFAGAVWAAGWDGLSQLFASFRWRDIWYVFAYGILYLIATTLGGILGDLVPIRFGVDFVNTLEAAQFGNLGAFSLISFRAFFMTLATQLTAVMIFLASQQLFSRLAIKHRRWALFLTYLLALAVTAVVTTTPLAPHVFVNIASGLVAQLPLYWVYRRSRNILVVTLSAFILMHVMIGLAVMLG
>NC_017473.1|WP_012491872.1|2295674_2296841_-|hypothetical-protein
MSRQNLMILIVDLVLIIIFIGGFGWGIGTVKRYQVEPNTSRTETNTDSLYSESRFEKTLKKFKRLDLMVRLGPVKDAKTFNYTPDEFNVKYSSQPIVPGLKATKTLNAETGEVEVCTTMTPQGVTVAGDYLLTTAYDHDGFHNSVMYIQDLKTGKLLNTVVLNGRPHVGGLTYDAKNDNIWICGRRNNAAEVFAIKLKTALTYNVDKKAKAVAYSQRAQLGNISRASFVTYYENALFVGFFNPTGKGNIQRYPLNDKGQVVGKSLTSSISNQFDVLTQSVLHQDILSKIQGMAFYGDYTILSQSYGGGNSMLYIFKTDPKKTIFRASDAIDTFDMPSHLEQISTHDGRMYMMFESAAYAYRHRSTNQLDRVLSMNLEGFVQLVLKEEK
>NC_017473.1|WP_003588552.1|2297064_2297439_+|YxeA-family-protein
MNMKKILIGIGIFIGLVILGGAGFYAWYTQSTPYYTQITTTGKKFDVIDDETGAPRDIDYAYTQMAYDEKGHGTEVDFNGHKSRPLKMQAYLRLDYSTRRNQVISWEAVPKEKVPKAALAKLNR
>NC_017473.1|WP_003566944.1|2297632_2297956_+|DUF4870-domain-containing-protein
MTNEHKVLRGLSYISVIFAPILFPILVWIFTPQGSVTRDTAKHALWLHIIPTLLSIFIFMIIGGVGFFTNSINATSAVSLILLLVAMVVDIGMVVYNIYTGIKIITS
>NC_017473.1|WP_003588557.1|2298027_2299755_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRGLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGIGRPVFQYIERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWIMLLLLFQVLILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHREKDFMSQSLAAPKKLAASTVKSKRFQWRRDFVGQLLFVLIVISMLIWTNLEWTGNQASANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLQPVTRQLPQQQAVPTQFKEMTLQHLSFQYTPKDPELITDIDLTVHSGEKIAILGPSGMGKTTLLQLVLGDLTPTTGNVLIDGQDVLTYQQHRTNLFAVLDQSPFLFNTSIVNNVRLGNEQASDADVAAALKAVKLDQLVAQLPNGINSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLETMFTVLQGKTILWVTHHLQGVNQTDRVIFLEDGRLTMNDTPSHLAKNDERYQNLYALDAGLR
>NC_017473.1|WP_014566618.1|2299735_2301478_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLMRLSGMKRIMTMLAGFALVQAFVILLQGKFLAEGIVHSWNRQSLAGLWLPLGLFATAFVIRQLIVWVRNRIGARFAMTSSAWLQAQLLKHLYALGPAAVAKEGTCNLVTMALDGIPEAENYIELILNKILNMSIIPWVLVAYIWYENWLTGFTLLIMFPIIILFMVILGLAAQDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISRQYVNNVYDVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMKAIWQVIDQPLPTDTNVLPAFSRWRAQDTVTINHLDFTYPNERAGIQNANLQFTGTEKVAIIGASGSGKSTLLNLIGGFLQPQKAAMTVRGTKVPHMTQAAWQDHLSYIPQDPYLFADTITANIRFYRPDASDEDVKQAAEAAGLSHWIETLADGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAELKETLVPLFKNRLVIFATHRLHWLNQMDRVIVVDGGKIIAEGTPSELAAHSKPYQALVHEMRGEFNALVEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017473_1	1.21\|2288482\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288482-2288511	30	NZ_CP031181	Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_G, complete sequence	1301-1330	0	1.0
NC_017473_1	1.21\|2288482\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288482-2288511	30	NZ_CP046668	Lactobacillus plantarum strain 83-18 plasmid p83-18.8, complete sequence	2173-2202	0	1.0
NC_017473_1	1.21\|2288482\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288482-2288511	30	NC_019233	Lactobacillus rennini plasmid pREN, complete sequence	3859-3888	0	1.0
NC_017473_1	1.20\|2288416\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288416-2288445	30	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	152941-152970	5	0.833
NC_017473_1	1.20\|2288416\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288416-2288445	30	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	158597-158626	5	0.833
NC_017473_1	1.20\|2288416\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288416-2288445	30	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	155161-155190	5	0.833
NC_017473_1	1.20\|2288416\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288416-2288445	30	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	136535-136564	5	0.833
NC_017473_1	1.20\|2288416\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288416-2288445	30	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	157962-157991	5	0.833
NC_017473_1	1.3\|2287294\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287294-2287323	30	NZ_CP021954	Klebsiella pneumoniae strain AR_0148 plasmid tig00001025alt_u_pilon, complete sequence	7530-7559	6	0.8
NC_017473_1	1.3\|2287294\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287294-2287323	30	KJ801817	Enterococcus phage ECP3, complete genome	49229-49258	6	0.8
NC_017473_1	1.3\|2287294\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287294-2287323	30	AP018715	Enterococcus phage phiM1EF22 DNA, complete sequence	47479-47508	6	0.8
NC_017473_1	1.3\|2287294\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287294-2287323	30	AP018714	Enterococcus phage phiEF17H DNA, complete sequence	49325-49354	6	0.8
NC_017473_1	1.4\|2287360\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287360-2287389	30	MT074431	Salmonella phage demigod, complete genome	324-353	6	0.8
NC_017473_1	1.4\|2287360\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287360-2287389	30	NC_023608	Salmonella phage vB_SenS-Ent2 complete genome	38327-38356	6	0.8
NC_017473_1	1.5\|2287426\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287426-2287455	30	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	156078-156107	6	0.8
NC_017473_1	1.5\|2287426\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287426-2287455	30	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	127368-127397	6	0.8
NC_017473_1	1.8\|2287624\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287624-2287653	30	NZ_CP025942	Bacillus subtilis strain BJ3-2 plasmid unnamed, complete sequence	14925-14954	6	0.8
NC_017473_1	1.8\|2287624\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287624-2287653	30	NZ_CP032854	Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence	22350-22379	6	0.8
NC_017473_1	1.11\|2287822\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287822-2287851	30	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	37361-37390	6	0.8
NC_017473_1	1.17\|2288218\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288218-2288247	30	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	44625-44654	6	0.8
NC_017473_1	1.15\|2288086\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288086-2288115	30	NZ_CP025810	Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence	57180-57209	7	0.767
NC_017473_1	1.19\|2288350\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288350-2288379	30	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	467711-467740	7	0.767
NC_017473_1	1.19\|2288350\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288350-2288379	30	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	26021-26050	7	0.767
NC_017473_1	1.6\|2287492\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287492-2287521	30	NZ_CP030832	Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence	25343-25372	8	0.733
NC_017473_1	1.9\|2287690\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287690-2287719	30	AP014435	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, * SEQUENCING IN PROGRESS *, 2 ordered pieces	10947-10976	8	0.733
NC_017473_1	1.9\|2287690\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287690-2287719	30	AP013443	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7	19838-19867	8	0.733
NC_017473_1	1.9\|2287690\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287690-2287719	30	AP014428	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, * SEQUENCING IN PROGRESS *, 7 ordered pieces	8798-8827	8	0.733
NC_017473_1	1.9\|2287690\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287690-2287719	30	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	45187-45216	8	0.733
NC_017473_1	1.13\|2287954\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287954-2287983	30	NC_015062	Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence	582633-582662	8	0.733
NC_017473_1	1.15\|2288086\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288086-2288115	30	NZ_CP046917	Paraburkholderia sp. DHF22 plasmid p1, complete sequence	140954-140983	8	0.733
NC_017473_1	1.17\|2288218\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288218-2288247	30	MH576968	Streptomyces phage Wofford, complete genome	99312-99341	8	0.733
NC_017473_1	1.17\|2288218\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288218-2288247	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	447964-447993	8	0.733
NC_017473_1	1.19\|2288350\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288350-2288379	30	MT028491	Ochrobactrum phage vB_OspM_OC, complete genome	7390-7419	8	0.733
NC_017473_1	1.19\|2288350\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2288350-2288379	30	MK288021	Bacillus phage pW2, complete genome	66366-66395	8	0.733
NC_017473_1	1.3\|2287294\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287294-2287323	30	LR135896	uncultured phage genomic DNA containing rbcL region region	22390-22419	9	0.7
NC_017473_1	1.5\|2287426\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287426-2287455	30	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	598353-598382	10	0.667
NC_017473_1	1.5\|2287426\|30\|NC_017473\|PILER-CR,CRISPRCasFinder,CRT	2287426-2287455	30	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1044313-1044342	10	0.667

1. spacer 1.21|2288482|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031181 (Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_G, complete sequence) position: , mismatch: 0, identity: 1.0

gccgtctaagctgttgttctggagaaaaca	CRISPR spacer
gccgtctaagctgttgttctggagaaaaca	Protospacer
******************************

2. spacer 1.21|2288482|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046668 (Lactobacillus plantarum strain 83-18 plasmid p83-18.8, complete sequence) position: , mismatch: 0, identity: 1.0

gccgtctaagctgttgttctggagaaaaca	CRISPR spacer
gccgtctaagctgttgttctggagaaaaca	Protospacer
******************************

3. spacer 1.21|2288482|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NC_019233 (Lactobacillus rennini plasmid pREN, complete sequence) position: , mismatch: 0, identity: 1.0

gccgtctaagctgttgttctggagaaaaca	CRISPR spacer
gccgtctaagctgttgttctggagaaaaca	Protospacer
******************************

4. spacer 1.20|2288416|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 5, identity: 0.833

ggggtgatttgttgcatacccacaatgtca	CRISPR spacer
tggttgatttgtttcatacccacaatgata	Protospacer
 ** ********* ************* .*

5. spacer 1.20|2288416|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 5, identity: 0.833

ggggtgatttgttgcatacccacaatgtca	CRISPR spacer
tggttgatttgtttcatacccacaatgata	Protospacer
 ** ********* ************* .*

6. spacer 1.20|2288416|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 5, identity: 0.833

ggggtgatttgttgcatacccacaatgtca	CRISPR spacer
tggttgatttgtttcatacccacaatgata	Protospacer
 ** ********* ************* .*

7. spacer 1.20|2288416|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 5, identity: 0.833

ggggtgatttgttgcatacccacaatgtca	CRISPR spacer
tggttgatttgtttcatacccacaatgata	Protospacer
 ** ********* ************* .*

8. spacer 1.20|2288416|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 5, identity: 0.833

ggggtgatttgttgcatacccacaatgtca	CRISPR spacer
tggttgatttgtttcatacccacaatgata	Protospacer
 ** ********* ************* .*

9. spacer 1.3|2287294|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021954 (Klebsiella pneumoniae strain AR_0148 plasmid tig00001025alt_u_pilon, complete sequence) position: , mismatch: 6, identity: 0.8

tccatggtaaaaacctcctattattttgtt	CRISPR spacer
tctaacataaaaatctccttttattttgtt	Protospacer
**.*  .******.***** **********

10. spacer 1.3|2287294|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to KJ801817 (Enterococcus phage ECP3, complete genome) position: , mismatch: 6, identity: 0.8

-tccatggtaaaaacctcctattattttgtt	CRISPR spacer
acccatta-aaaaacctcctactattttgta	Protospacer
 .**** . ************.********

11. spacer 1.3|2287294|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to AP018715 (Enterococcus phage phiM1EF22 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

-tccatggtaaaaacctcctattattttgtt	CRISPR spacer
acccatta-aaaaacctcctactattttgta	Protospacer
 .**** . ************.********

12. spacer 1.3|2287294|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to AP018714 (Enterococcus phage phiEF17H DNA, complete sequence) position: , mismatch: 6, identity: 0.8

-tccatggtaaaaacctcctattattttgtt	CRISPR spacer
acccatta-aaaaacctcctactattttgta	Protospacer
 .**** . ************.********

13. spacer 1.4|2287360|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to MT074431 (Salmonella phage demigod, complete genome) position: , mismatch: 6, identity: 0.8

tgttgcaatcggtgaaagtatcgcgattgc	CRISPR spacer
tgttgcattcggtgaaagtgtcgctttttg	Protospacer
******* ***********.****  **

14. spacer 1.4|2287360|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NC_023608 (Salmonella phage vB_SenS-Ent2 complete genome) position: , mismatch: 6, identity: 0.8

tgttgcaatcggtgaaagtatcgcgattgc	CRISPR spacer
tgttgcattcggtgaaagtgtcgctttttg	Protospacer
******* ***********.****  **

15. spacer 1.5|2287426|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

acttgatcatgcagaaggatattgacgagt	CRISPR spacer
acgtcgtggtgcagaaggatatagacgagt	Protospacer
** * .* .************* *******

16. spacer 1.5|2287426|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

acttgatcatgcagaaggatattgacgagt	CRISPR spacer
acgtcgtggtgcagaaggatgttgacgagt	Protospacer
** * .* .***********.*********

17. spacer 1.8|2287624|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025942 (Bacillus subtilis strain BJ3-2 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aacatattgatcagcctttct--tcaacgatc	CRISPR spacer
accatattgatcagcatttcttctcaatgg--	Protospacer
* ************* *****  ****.*.

18. spacer 1.8|2287624|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032854 (Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aacatattgatcagcctttct--tcaacgatc	CRISPR spacer
accatattgatcagcatttcttctcaatgg--	Protospacer
* ************* *****  ****.*.

19. spacer 1.11|2287822|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 6, identity: 0.8

cgagaccaacaccagcgcaagcgaacgctt	CRISPR spacer
gaagaccaacaccagcgcaagcgcaagcaa	Protospacer
 .********************* * **

20. spacer 1.17|2288218|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 6, identity: 0.8

agtgagccggtgcatattgcaccggctttt	CRISPR spacer
gatcggccggcgcatattgcgccggctttt	Protospacer
..* .*****.*********.*********

21. spacer 1.15|2288086|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025810 (Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggtttcttcgtttacaatcgtgccgcgatc	CRISPR spacer
tgcttcttcatttaccatcgtgccgcgcgg	Protospacer
 *.******.***** ***********

22. spacer 1.19|2288350|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

cagtagataagattgtttttgtcaagtttc	CRISPR spacer
tcgtaaatatgattgtttttgtcaagataa	Protospacer
. ***.*** **************** *

23. spacer 1.19|2288350|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 7, identity: 0.767

cagtagataagattgtttttgtcaagtttc	CRISPR spacer
ctgttgataagattgtttttgccaaatgat	Protospacer
* ** ****************.***.*  .

24. spacer 1.6|2287492|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030832 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence) position: , mismatch: 8, identity: 0.733

gcgacaatctcccgactgatgatattggcc	CRISPR spacer
ccgcggatctcccgaccgatgatattgaag	Protospacer
 **  .**********.**********.

25. spacer 1.9|2287690|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to AP014435 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.733

ccataaagttgctaattctagaaatatttt	CRISPR spacer
tggttggtttgctaattctaaaaatatttt	Protospacer
. .* .. ************.*********

26. spacer 1.9|2287690|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to AP013443 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7) position: , mismatch: 8, identity: 0.733

ccataaagttgctaattctagaaatatttt	CRISPR spacer
tggttggtttgctaattctaaaaatatttt	Protospacer
. .* .. ************.*********

27. spacer 1.9|2287690|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to AP014428 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.733

ccataaagttgctaattctagaaatatttt	CRISPR spacer
tggttggtttgctaattctaaaaatatttt	Protospacer
. .* .. ************.*********

28. spacer 1.9|2287690|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 8, identity: 0.733

ccataaagttgctaattctagaaatatttt	CRISPR spacer
aaataaagttggtaatactagaaatgtgaa	Protospacer
  ********* **** ********.*

29. spacer 1.13|2287954|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 8, identity: 0.733

gccagttgtttaatggataagcctctgata	CRISPR spacer
cccagttgtttaatggatacggcttattga	Protospacer
 ****************** * **.    *

30. spacer 1.15|2288086|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046917 (Paraburkholderia sp. DHF22 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtttcttcgtttacaatcgtgccgcgatc	CRISPR spacer
cgagccgacgttgacaatcgtgccgcgatt	Protospacer
 *  .*  **** ****************.

31. spacer 1.17|2288218|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to MH576968 (Streptomyces phage Wofford, complete genome) position: , mismatch: 8, identity: 0.733

agtgagccggtgcatattgcaccggctttt	CRISPR spacer
gactggccggtgcttattgcaccggcctta	Protospacer
... .******** ************.**

32. spacer 1.17|2288218|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.733

agtgagccggtgcatattgcaccggctttt	CRISPR spacer
tattttccggggcatattgtaccggctttc	Protospacer
 .*   **** ********.*********.

33. spacer 1.19|2288350|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 8, identity: 0.733

cagtagataagattgtttttgtcaagtttc	CRISPR spacer
agatggataagattgtcattgtcaagttct	Protospacer
 ..*.***********. **********..

34. spacer 1.19|2288350|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 8, identity: 0.733

cagtagataagattgtttttgtcaagtttc	CRISPR spacer
tcatctatactattgtttttgtcaagtttg	Protospacer
. .*  ***  ******************

35. spacer 1.3|2287294|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 9, identity: 0.7

tccatggtaaaaacctcctattattttgtt	CRISPR spacer
gatatggtaaaagccttctattatttccgc	Protospacer
  .*********.***.*********.  .

36. spacer 1.5|2287426|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.667

acttgatcatgcagaaggatattgacgagt	CRISPR spacer
gtcgcgccatgcagaatgatattgacgatg	Protospacer
...  ..********* ***********

37. spacer 1.5|2287426|30|NC_017473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.667

acttgatcatgcagaaggatattgacgagt	CRISPR spacer
gtcgcgccatgcagaatgatattgacgatg	Protospacer
...  ..********* ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20326 : 66668

Planktothrix_phage(25.0%)

bacteriocin,transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003568480.1\|20326_21184_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003568482.1\|21263_21446_-	hypothetical protein	NA	NA	NA	NA
WP_012490759.1\|21496_21676_-	hypothetical protein	NA	NA	NA	NA
WP_003572828.1\|22173_23409_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_012490760.1\|23612_26186_-	ABC transporter permease	NA	NA	NA	NA
WP_003568488.1\|26198_26900_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-33	40.5
WP_012490761.1\|27179_27731_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003584074.1\|27774_28581_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003584076.1\|28585_28906_+	hypothetical protein	NA	NA	NA	NA
WP_014566351.1\|29131_29812_+	hypothetical protein	NA	NA	NA	NA
WP_012490762.1\|29744_30248_-	hypothetical protein	NA	NA	NA	NA
WP_012490763.1\|30267_32418_-	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_012490764.1\|32486_33374_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014951491.1\|33555_34161_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_003568507.1\|34284_35178_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_012490766.1\|35226_35865_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003568512.1\|36093_37470_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_012490767.1\|37692_38037_-	hypothetical protein	NA	NA	NA	NA
WP_003562540.1\|38112_38472_-	hypothetical protein	NA	NA	NA	NA
WP_012490768.1\|38712_40155_+	C69 family dipeptidase	NA	NA	NA	NA
WP_003577239.1\|40349_40985_+	hypothetical protein	NA	NA	NA	NA
WP_003577240.1\|41034_41346_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003577242.1\|41514_41703_+	hypothetical protein	NA	NA	NA	NA
WP_003577243.1\|41834_42446_-	hypothetical protein	NA	NA	NA	NA
WP_003659032.1\|42803_43277_+	hypothetical protein	NA	NA	NA	NA
WP_003568611.1\|43428_43767_+	hypothetical protein	NA	NA	NA	NA
WP_012490769.1\|44100_44811_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003592450.1\|44797_45127_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_012490770.1\|46007_46223_-	hypothetical protein	NA	NA	NA	NA
WP_012490771.1\|46569_47445_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012490772.1\|47790_48441_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_012490773.1\|48609_50025_-\|transposase	IS5-like element ISLca2 family transposase	NA	NA	NA	NA
WP_003562575.1\|50406_51099_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003562576.1\|51797_52118_+	hypothetical protein	NA	NA	NA	NA
WP_012490774.1\|52306_53182_-	Rgg/GadR/MutR family transcriptional regulator	A0A1X9I6E0	Streptococcus_phage	1.0e-11	26.6
WP_012490775.1\|53274_54867_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-11	28.5
WP_012490776.1\|55204_56578_-	MFS transporter	NA	NA	NA	NA
WP_011673959.1\|56755_57079_-	hypothetical protein	NA	NA	NA	NA
WP_012490777.1\|57259_60571_-	MMPL family transporter	NA	NA	NA	NA
WP_003572929.1\|60567_61170_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003572931.1\|61420_61681_-	hypothetical protein	NA	NA	NA	NA
WP_003562592.1\|61893_62556_-	ABC transporter permease	NA	NA	NA	NA
WP_003562594.1\|62555_63485_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003568628.1\|63496_64126_-	ABC transporter permease	NA	NA	NA	NA
WP_012490780.1\|64128_65382_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-14	43.0
WP_003577283.1\|66014_66668_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

337615 : 398299

Staphylococcus_phage(50.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014566389.1\|337615_338305_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_024109404.1\|338368_339055_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012490911.1\|339137_339527_-	YxeA family protein	NA	NA	NA	NA
WP_003577580.1\|339558_340083_-	hypothetical protein	NA	NA	NA	NA
WP_014566391.1\|340072_340342_-	AAA family ATPase	NA	NA	NA	NA
WP_012490773.1\|340449_341865_+\|transposase	IS5-like element ISLca2 family transposase	NA	NA	NA	NA
WP_016363600.1\|342290_343016_-	hypothetical protein	NA	NA	NA	NA
WP_003577587.1\|343015_343696_-	hypothetical protein	NA	NA	NA	NA
WP_012490915.1\|343685_344474_-	membrane protein	NA	NA	NA	NA
WP_012490917.1\|344924_346451_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	7.4e-53	31.3
WP_012490918.1\|346721_347843_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012490919.1\|347835_348804_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_003573439.1\|348804_349116_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012490920.1\|349257_350544_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003604285.1\|350560_350983_+	hypothetical protein	NA	NA	NA	NA
WP_003563251.1\|351004_351865_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_012490921.1\|351977_352619_+	zeta toxin family protein	NA	NA	NA	NA
WP_003563255.1\|352905_353736_+	transcriptional regulator	NA	NA	NA	NA
WP_003563257.1\|353728_354598_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012490922.1\|354637_355633_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_003563261.1\|356187_356967_+	alpha/beta hydrolase	A0A291AV30	Mycobacterium_phage	1.0e-05	25.4
WP_012490923.1\|358220_358955_+	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_003601683.1\|358861_359860_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-55	39.8
WP_012490924.1\|359918_360800_+	hypothetical protein	NA	NA	NA	NA
WP_003563273.1\|363752_364151_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_003563277.1\|364263_364635_-	hypothetical protein	NA	NA	NA	NA
WP_003563280.1\|366647_367490_+	serine hydrolase	NA	NA	NA	NA
WP_016364816.1\|367586_368066_-	hypothetical protein	NA	NA	NA	NA
WP_012490929.1\|368065_368296_-	hypothetical protein	NA	NA	NA	NA
WP_003586699.1\|368379_369363_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003586701.1\|369721_370546_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_012490930.1\|370532_371270_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_003601683.1\|372267_373266_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-55	39.8
WP_012490933.1\|373989_374844_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	8.4e-14	29.2
WP_012490934.1\|374846_375626_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014566730.1\|375638_376763_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_003604304.1\|377110_378046_+	nucleoside hydrolase	NA	NA	NA	NA
WP_012490936.1\|378057_379464_+	C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_012490937.1\|379479_379977_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012490938.1\|380019_380760_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012490939.1\|380904_381702_-	protein SipE	NA	NA	NA	NA
WP_003586715.1\|381712_382555_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_012490940.1\|382558_383326_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003586720.1\|383351_383861_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003586723.1\|383888_384296_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012490941.1\|384590_387329_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_014951596.1\|387370_388666_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_012490943.1\|389075_390533_+	PRD domain-containing protein	NA	NA	NA	NA
WP_012490944.1\|390534_391005_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012490945.1\|391006_391948_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_012490946.1\|391977_392451_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_003586737.1\|392447_392765_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA
WP_014566402.1\|392780_393866_+	PTS fructose transporter subunit IIC	NA	NA	NA	NA
WP_012490948.1\|393888_394863_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_012490949.1\|394869_395556_+	D-lyxose/D-mannose family sugar isomerase	NA	NA	NA	NA
WP_012490950.1\|395674_397141_+	xylulokinase	NA	NA	NA	NA
WP_012490951.1\|397300_398299_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.5e-49	38.4

DBSCAN-SWA_3

555455 : 641777

100

Lactobacillus_phage(61.29%)

integrase,transposase

attL 555976:555991|attR 587301:587316

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003577893.1\|555455_556385_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	5.9e-106	63.7
555976:555991	attL	NA	NA	NA	NA
WP_012491046.1\|556578_557124_-	hypothetical protein	NA	NA	NA	NA
WP_003569067.1\|557444_558614_-\|integrase	site-specific integrase	Q6J1W6	Lactobacillus_phage	6.6e-219	98.2
WP_003573997.1\|558726_558987_-	hypothetical protein	B4XYT0	Lactobacillus_phage	2.5e-09	40.7
WP_003589914.1\|559076_559697_+	hypothetical protein	NA	NA	NA	NA
WP_012491047.1\|559680_559917_-	hypothetical protein	NA	NA	NA	NA
WP_003589919.1\|560109_560817_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_003572182.1\|560975_561398_-	ImmA/IrrE family metallo-endopeptidase	A0A0P0IJN5	Lactobacillus_phage	7.8e-21	39.1
WP_003572184.1\|561390_561744_-	helix-turn-helix transcriptional regulator	A0A141E1M3	Streptococcus_phage	7.7e-14	40.9
WP_003574003.1\|561987_562236_+	hypothetical protein	A0A0P0ID24	Lactobacillus_phage	2.7e-37	97.5
WP_003572187.1\|562277_562478_+	hypothetical protein	NA	NA	NA	NA
WP_003572188.1\|562448_563282_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	2.8e-46	37.8
WP_010493122.1\|563342_564101_+	ORF6C domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	1.9e-41	49.4
WP_003572193.1\|564101_564281_+	hypothetical protein	NA	NA	NA	NA
WP_003572196.1\|564273_564525_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_003572199.1\|564590_564947_+	DUF771 domain-containing protein	U5U4L9	Lactobacillus_phage	2.0e-62	98.3
WP_003572201.1\|565031_565235_+	hypothetical protein	NA	NA	NA	NA
WP_003586921.1\|565217_565763_-	hypothetical protein	NA	NA	NA	NA
WP_010493132.1\|565943_566258_+	hypothetical protein	NA	NA	NA	NA
WP_003589923.1\|566250_566997_+	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	5.8e-35	56.1
WP_012491048.1\|567011_567836_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	9.6e-116	74.7
WP_003574016.1\|567835_568354_+	exonuclease domain-containing protein	NA	NA	NA	NA
WP_003564822.1\|568400_568823_+	hypothetical protein	NA	NA	NA	NA
WP_003572217.1\|568824_569562_+	hypothetical protein	A0A097BY87	Enterococcus_phage	1.3e-47	43.0
WP_010493149.1\|569573_569861_+	hypothetical protein	Q8LTA8	Lactobacillus_phage	1.6e-38	76.8
WP_010493151.1\|569930_570263_+	hypothetical protein	NA	NA	NA	NA
WP_010493154.1\|570777_571221_+	autolysin regulatory protein arpU	A0A0P0IZI6	Lactobacillus_phage	1.2e-77	97.3
WP_003572221.1\|571734_572388_+	hypothetical protein	NA	NA	NA	NA
WP_012491050.1\|572638_573637_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.9e-55	39.8
WP_003573729.1\|573832_574051_-	CsbD family protein	NA	NA	NA	NA
WP_010493173.1\|575583_575919_+	ribonucleoside-diphosphate reductase	A0A0N7IRA2	Lactobacillus_phage	6.8e-52	90.6
WP_076626284.1\|576038_576371_+\|transposase	transposase	NA	NA	NA	NA
WP_003582147.1\|576400_577129_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	7.6e-32	40.1
WP_014951815.1\|577062_578004_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.1e-17	28.2
WP_016364094.1\|578049_578913_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.1e-24	30.5
WP_010493185.1\|579642_579921_+	hypothetical protein	NA	NA	NA	NA
WP_003572355.1\|579932_580199_+	hypothetical protein	NA	NA	NA	NA
WP_003572358.1\|580217_580394_+	hypothetical protein	NA	NA	NA	NA
WP_003572360.1\|580395_580623_+	hypothetical protein	NA	NA	NA	NA
WP_010493190.1\|580665_581907_+	hypothetical protein	NA	NA	NA	NA
WP_010493192.1\|581884_583435_+	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_012491056.1\|583444_583864_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_012491057.1\|583872_584451_+	hypothetical protein	NA	NA	NA	NA
WP_012491058.1\|584477_586937_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012491059.1\|586933_588991_+	hypothetical protein	NA	NA	NA	NA
587301:587316	attR	NA	NA	NA	NA
WP_003582234.1\|588996_589332_+	hypothetical protein	NA	NA	NA	NA
WP_014566422.1\|589315_589912_+	hypothetical protein	NA	NA	NA	NA
WP_012491061.1\|589892_591821_+	type IV secretory pathway, VirB4 protein	NA	NA	NA	NA
WP_012491062.1\|591822_592833_+	C40 family peptidase	A0A1X9SGZ2	Bradyrhizobium_phage	1.2e-14	37.9
WP_012491063.1\|592848_593493_+	hypothetical protein	NA	NA	NA	NA
WP_012491064.1\|593489_593897_+	thioredoxin family protein	NA	NA	NA	NA
WP_014566423.1\|593886_594708_+	hypothetical protein	NA	NA	NA	NA
WP_012491066.1\|595302_595503_+	hypothetical protein	NA	NA	NA	NA
WP_012491067.1\|595499_595757_+	hypothetical protein	NA	NA	NA	NA
WP_012491068.1\|595795_596230_+	hypothetical protein	NA	NA	NA	NA
WP_012491069.1\|596222_597467_+	hypothetical protein	NA	NA	NA	NA
WP_016379926.1\|597508_597754_+	hypothetical protein	NA	NA	NA	NA
WP_014566424.1\|597740_600287_+	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_012491073.1\|600888_601278_-	hypothetical protein	NA	NA	NA	NA
WP_003660106.1\|601280_601424_-	hypothetical protein	NA	NA	NA	NA
WP_012491077.1\|602179_602626_-	hypothetical protein	NA	NA	NA	NA
WP_012491078.1\|603128_604010_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_012491079.1\|604026_604386_+	transcriptional regulator	NA	NA	NA	NA
WP_012491080.1\|604464_605136_+	class A sortase	NA	NA	NA	NA
WP_012491081.1\|605270_605501_+	hypothetical protein	NA	NA	NA	NA
WP_041168760.1\|605921_607478_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_100216635.1\|608162_608950_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003586210.1\|608904_609282_-	hypothetical protein	NA	NA	NA	NA
WP_012491083.1\|609317_609590_-	hypothetical protein	NA	NA	NA	NA
WP_012491084.1\|609649_612454_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	1.5e-72	27.6
WP_012491085.1\|612995_613679_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	3.1e-59	51.3
WP_005688360.1\|614153_615308_+	cation:proton antiporter	NA	NA	NA	NA
WP_123796556.1\|615316_616104_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014566427.1\|616058_616436_-	hypothetical protein	NA	NA	NA	NA
WP_012491083.1\|616471_616744_-	hypothetical protein	NA	NA	NA	NA
WP_012491084.1\|616803_619608_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	1.5e-72	27.6
WP_012491088.1\|620149_620770_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.9e-56	52.9
WP_012491089.1\|620957_621887_-	class I mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_012491090.1\|621900_622731_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_012491091.1\|622743_623598_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_012491092.1\|623626_624121_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012491093.1\|624164_624584_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012491094.1\|624760_625483_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_012491095.1\|625580_626318_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012491096.1\|626622_626943_+	hypothetical protein	NA	NA	NA	NA
WP_012491097.1\|627039_627627_+	recombinase family protein	M4QQC6	Vibrio_phage	1.0e-18	42.3
WP_003591692.1\|627794_629123_+	MFS transporter	NA	NA	NA	NA
WP_003567312.1\|629323_629881_+	hypothetical protein	NA	NA	NA	NA
WP_123796556.1\|630402_631190_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_123031263.1\|631641_632385_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.5e-136	98.4
WP_012491102.1\|632657_632789_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	2.3e-16	90.7
WP_003593245.1\|633045_633963_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_003593246.1\|634109_634718_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.8e-50	52.8
WP_010010565.1\|634728_635997_+	NADPH-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.8e-49	47.7
WP_012491102.1\|636270_636402_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	2.3e-16	90.7
WP_123031263.1\|636674_637418_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.5e-136	98.4
WP_012491103.1\|637622_639302_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_012491105.1\|639648_639846_+	hypothetical protein	NA	NA	NA	NA
WP_003585300.1\|639820_640174_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_012491106.1\|640274_641777_+\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

896566 : 964672

Lactobacillus_phage(94.23%)

capsid,transposase,holin,terminase,protease,tail,integrase,tRNA,head,portal

attL 923213:923229|attR 969737:969753

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011674296.1\|896566_898069_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_003564071.1\|898363_898912_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014566463.1\|899291_901010_+	APC family permease	NA	NA	NA	NA
WP_003569394.1\|901296_902505_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_003564079.1\|902507_903536_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_003564081.1\|903548_904562_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_003564083.1\|904597_904951_+	hypothetical protein	NA	NA	NA	NA
WP_014566464.1\|905036_906212_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_003564087.1\|906457_906736_+	YkuJ family protein	NA	NA	NA	NA
WP_012491223.1\|906966_909060_+	LTA synthase family protein	W6LM83	Streptococcus_phage	6.1e-151	46.9
WP_003564091.1\|909252_909693_+	transcriptional repressor	NA	NA	NA	NA
WP_003569415.1\|915752_916400_-	hypothetical protein	NA	NA	NA	NA
WP_003564111.1\|916580_917765_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-141	66.0
WP_003564114.1\|917878_919372_+	MFS transporter	NA	NA	NA	NA
WP_012491224.1\|919466_919937_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003569431.1\|920180_921659_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003598039.1\|921655_922381_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_003578172.1\|922481_923165_-	phosphatase PAP2 family protein	NA	NA	NA	NA
923213:923229	attL	NA	NA	NA	NA
WP_003578174.1\|923743_926155_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	68.4
WP_003564130.1\|926420_928064_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_012491225.1\|928068_928779_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA
WP_003569458.1\|928921_929137_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_003569460.1\|929253_930075_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_012491226.1\|930071_930575_-	NUDIX hydrolase	NA	NA	NA	NA
WP_012491227.1\|930898_932038_-\|integrase	site-specific integrase	A0A0P0IXL3	Lactobacillus_phage	2.4e-218	100.0
WP_003598052.1\|932155_933223_-	Abi family protein	A0A0N7IRA5	Lactobacillus_phage	1.1e-207	100.0
WP_003598055.1\|933367_933799_-	hypothetical protein	A0A0P0IJV8	Lactobacillus_phage	6.8e-73	100.0
WP_012491228.1\|933868_934351_-	hypothetical protein	A0A0P0IZP3	Lactobacillus_phage	2.1e-83	100.0
WP_003598059.1\|934354_934648_-	hypothetical protein	A0A0P0HRW5	Lactobacillus_phage	5.7e-47	100.0
WP_012491229.1\|934831_935692_-	ImmA/IrrE family metallo-endopeptidase	A0A0P0IV64	Lactobacillus_phage	2.8e-158	100.0
WP_012491230.1\|935678_936047_-	helix-turn-helix domain-containing protein	A0A0P0I3L3	Lactobacillus_phage	2.8e-59	100.0
WP_003578190.1\|936302_936500_+	hypothetical protein	A0A0P0IK60	Lactobacillus_phage	5.2e-28	100.0
WP_012491231.1\|936496_937219_+	Rha family transcriptional regulator	A0A0P0IDD0	Lactobacillus_phage	1.4e-126	100.0
WP_014951753.1\|937226_937439_+	hypothetical protein	A0A0N7IRA6	Lactobacillus_phage	7.8e-30	100.0
WP_003657835.1\|937547_937772_+	DUF771 domain-containing protein	A0A0P0IQT9	Lactobacillus_phage	2.6e-39	100.0
WP_012491233.1\|937860_938073_+	hypothetical protein	A0A0P0IXL9	Lactobacillus_phage	2.5e-36	100.0
WP_012491234.1\|938082_938958_+	YqaJ viral recombinase family protein	A0A0P0IJW5	Lactobacillus_phage	1.1e-170	100.0
WP_012491235.1\|938960_939155_+	hypothetical protein	A0A0P0IZQ2	Lactobacillus_phage	2.5e-30	100.0
WP_012491236.1\|939154_940042_+	recombinase RecT	A0A0P0HRX2	Lactobacillus_phage	8.6e-163	100.0
WP_012491237.1\|940050_940296_+	helix-turn-helix transcriptional regulator	A0A0P0IV68	Lactobacillus_phage	2.6e-37	100.0
WP_012491238.1\|940300_941146_+	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	1.0e-133	100.0
WP_012491239.1\|941183_942005_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	6.1e-155	100.0
WP_012491240.1\|942001_942301_+	hypothetical protein	A0A0P0IK66	Lactobacillus_phage	2.1e-49	100.0
WP_014566466.1\|942263_942548_+	hypothetical protein	A0A0P0IDD7	Lactobacillus_phage	8.8e-45	100.0
WP_014566751.1\|942516_942864_+	hypothetical protein	A0A0P0IQU7	Lactobacillus_phage	1.5e-62	100.0
WP_012491243.1\|942856_943435_+	HNH endonuclease	A0A0P0I7T6	Lactobacillus_phage	1.1e-105	100.0
WP_012491244.1\|943448_943871_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0IXM5	Lactobacillus_phage	5.5e-75	100.0
WP_012491245.1\|943875_944139_+	hypothetical protein	A0A0P0IJX1	Lactobacillus_phage	6.1e-40	100.0
WP_012491246.1\|944162_944486_+	hypothetical protein	A0A0N7IRA8	Lactobacillus_phage	9.7e-56	100.0
WP_012491247.1\|944564_945014_+	hypothetical protein	A0A0P0IZR0	Lactobacillus_phage	1.2e-80	100.0
WP_012491248.1\|945238_945619_+	HNH endonuclease	A0A0P0HRY0	Lactobacillus_phage	2.5e-71	100.0
WP_003582259.1\|945688_946063_+	hypothetical protein	A0A1B0YE76	Lactobacillus_phage	3.6e-62	100.0
WP_014566467.1\|946065_947796_+\|terminase	terminase large subunit	A0A0P0IJU3	Lactobacillus_phage	0.0e+00	99.8
WP_012491251.1\|947814_949050_+\|portal	phage portal protein	A0A0P0IZM3	Lactobacillus_phage	2.6e-234	100.0
WP_012491252.1\|949027_949735_+\|protease	Clp protease ClpP	A0A0P0HRU7	Lactobacillus_phage	7.2e-128	100.0
WP_014566468.1\|949739_950969_+\|capsid	phage major capsid protein	A0A0P0IV50	Lactobacillus_phage	2.1e-228	99.8
WP_012491254.1\|951042_951291_+	hypothetical protein	A0A0P0I3K0	Lactobacillus_phage	9.1e-38	100.0
WP_003582271.1\|951304_951631_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B0Y2R7	Lactobacillus_phage	7.0e-54	100.0
WP_012491255.1\|951569_951908_+\|head	phage head closure protein	A0A0N7IRA3	Lactobacillus_phage	2.2e-58	100.0
WP_012491256.1\|951891_952221_+	hypothetical protein	A0A0P0IDB8	Lactobacillus_phage	3.1e-57	100.0
WP_012491257.1\|952210_952594_+	hypothetical protein	A0A0P0IQS9	Lactobacillus_phage	4.5e-68	100.0
WP_012491258.1\|952605_953253_+	hypothetical protein	A0A0P0I7R6	Lactobacillus_phage	1.5e-119	100.0
WP_003595114.1\|953329_953695_+	hypothetical protein	A0A1B0Y865	Lactobacillus_phage	4.6e-62	100.0
WP_003582283.1\|953775_953937_+	hypothetical protein	A0A0P0IJV2	Lactobacillus_phage	7.5e-25	100.0
WP_012491260.1\|953956_956929_+	tape measure protein	A0A0P0IZN3	Lactobacillus_phage	1.3e-292	100.0
WP_012491261.1\|956935_957631_+	hypothetical protein	A0A0P0HRV6	Lactobacillus_phage	8.3e-129	100.0
WP_014566469.1\|957627_962034_+\|tail	phage tail protein	A0A0N7IRA4	Lactobacillus_phage	0.0e+00	100.0
WP_012491263.1\|962062_962488_+	DUF1617 family protein	A0A1B0Y2S1	Lactobacillus_phage	8.8e-73	100.0
WP_012491264.1\|962490_962760_+	hypothetical protein	A0A0P0I3K6	Lactobacillus_phage	2.4e-39	100.0
WP_012491265.1\|962805_963099_+	hypothetical protein	A0A0P0IK41	Lactobacillus_phage	4.0e-48	100.0
WP_012491266.1\|963088_963523_+\|holin	phage holin	A0A0P0IDC6	Lactobacillus_phage	7.4e-51	100.0
WP_012491267.1\|963522_963711_+	hypothetical protein	A0A0P0IQT6	Lactobacillus_phage	6.7e-25	100.0
WP_012491268.1\|963697_964672_+	N-acetylmuramoyl-L-alanine amidase	A0A0P0I7S1	Lactobacillus_phage	9.1e-198	100.0
969737:969753	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1021794 : 1080271

Lactobacillus_phage(87.27%)

capsid,holin,terminase,protease,tail,integrase,head,portal

attL 1045445:1045463|attR 1080353:1080371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003564220.1\|1021794_1022130_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_003564222.1\|1022321_1023281_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_003578277.1\|1023282_1024110_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_003583985.1\|1024120_1025176_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_012491289.1\|1025241_1026195_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.9e-81	47.9
WP_012491290.1\|1026778_1028506_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.3e-182	54.9
WP_003569557.1\|1028740_1029388_+	response regulator transcription factor	NA	NA	NA	NA
WP_014566477.1\|1029380_1030391_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_014566756.1\|1031161_1033528_+	ABC transporter permease	NA	NA	NA	NA
WP_003564240.1\|1033685_1034333_+	HD domain-containing protein	NA	NA	NA	NA
WP_003578292.1\|1034538_1036554_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_012491295.1\|1036821_1039713_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.9e-307	56.2
WP_003564246.1\|1040064_1040604_+	DUF308 domain-containing protein	NA	NA	NA	NA
WP_003564248.1\|1040766_1041654_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	31.4
WP_003564250.1\|1041650_1042679_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	2.3e-90	51.2
WP_012491296.1\|1042683_1043631_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	9.2e-54	40.7
WP_003564253.1\|1044016_1044472_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003564255.1\|1044588_1045179_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.1e-52	52.3
1045445:1045463	attL	NA	NA	NA	NA
WP_012491297.1\|1045583_1046735_-\|integrase	site-specific integrase	Q8W767	Lactobacillus_phage	2.2e-219	100.0
WP_012491298.1\|1046845_1047607_-	hypothetical protein	A0A1B0YA83	Lactobacillus_phage	1.2e-144	100.0
WP_012491299.1\|1047625_1047856_+	hypothetical protein	U5U783	Lactobacillus_phage	7.2e-37	100.0
WP_012491300.1\|1048111_1048891_-	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	9.1e-116	100.0
WP_012491301.1\|1048962_1049367_-	ImmA/IrrE family metallo-endopeptidase	A0A1B0Y2S4	Lactobacillus_phage	2.1e-76	100.0
WP_012491302.1\|1049363_1049690_-	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	3.4e-56	100.0
WP_012491303.1\|1049946_1050159_+	helix-turn-helix transcriptional regulator	A0A1B0YC38	Lactobacillus_phage	3.7e-32	100.0
WP_012491304.1\|1050161_1050935_+	ORF6N domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	1.3e-143	100.0
WP_012491305.1\|1050966_1051290_+	DUF771 domain-containing protein	A0A1B0Y6D5	Lactobacillus_phage	1.2e-58	100.0
WP_012491308.1\|1051557_1051869_-	hypothetical protein	A0A1B0YA89	Lactobacillus_phage	8.2e-52	100.0
WP_012491309.1\|1051929_1052121_+	hypothetical protein	A0A1B0Y2S8	Lactobacillus_phage	6.4e-31	100.0
WP_012491310.1\|1052134_1052374_+	hypothetical protein	A0A1B0Y2S6	Lactobacillus_phage	7.7e-34	100.0
WP_012491311.1\|1052378_1052873_+	siphovirus Gp157 family protein	A0A1B0Y2S7	Lactobacillus_phage	9.9e-84	100.0
WP_012491312.1\|1052884_1053115_+	hypothetical protein	A0A1B0Y3N2	Lactobacillus_phage	3.0e-35	100.0
WP_012491313.1\|1053114_1054482_+	DEAD/DEAH box helicase	A0A1B0YC45	Lactobacillus_phage	1.6e-264	100.0
WP_012491314.1\|1054483_1055224_+	AAA family ATPase	A0A1B0YEB5	Lactobacillus_phage	4.1e-134	100.0
WP_012491315.1\|1055226_1055736_+	hypothetical protein	A0A1B0Y6E2	Lactobacillus_phage	4.1e-93	100.0
WP_012491316.1\|1055802_1056600_+	bifunctional DNA primase/polymerase	A0A1B0Y4T1	Lactobacillus_phage	1.4e-151	100.0
WP_012491317.1\|1056604_1057840_+	helicase	A0A1B0Y896	Lactobacillus_phage	1.1e-237	100.0
WP_012491318.1\|1058114_1058429_+	VRR-NUC domain-containing protein	A0A1B0YA93	Lactobacillus_phage	1.4e-54	100.0
WP_012491319.1\|1058435_1058720_+	hypothetical protein	A0A1B0Y2T1	Lactobacillus_phage	6.8e-45	100.0
WP_014951787.1\|1058688_1059036_+	hypothetical protein	A0A1B0Y2S9	Lactobacillus_phage	2.2e-58	99.1
WP_012491321.1\|1059028_1059616_+	HNH endonuclease	A0A1B0Y2T0	Lactobacillus_phage	9.9e-107	100.0
WP_012491322.1\|1059602_1059857_+	hypothetical protein	A0A1B0Y3N3	Lactobacillus_phage	2.3e-44	100.0
WP_012491323.1\|1059853_1060258_+	transcriptional regulator	A0A1B0YC57	Lactobacillus_phage	9.3e-72	100.0
WP_012491324.1\|1060422_1060803_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	1.5e-71	100.0
WP_003582259.1\|1060871_1061246_+	hypothetical protein	A0A1B0YE76	Lactobacillus_phage	3.6e-62	100.0
WP_012491326.1\|1061248_1062979_+\|terminase	terminase large subunit	A0A1B0Y6B8	Lactobacillus_phage	0.0e+00	100.0
WP_012491327.1\|1062997_1064233_+\|portal	phage portal protein	A0A1B0Y4Q9	Lactobacillus_phage	1.2e-234	100.0
WP_012491328.1\|1064210_1064918_+\|protease	Clp protease ClpP	A0A1B0Y857	Lactobacillus_phage	1.4e-128	100.0
WP_012491329.1\|1064922_1066152_+\|capsid	phage major capsid protein	A0A1B0YA73	Lactobacillus_phage	4.3e-229	100.0
WP_012491330.1\|1066225_1066474_+	hypothetical protein	A0A1B0Y2R9	Lactobacillus_phage	7.0e-38	100.0
WP_003582271.1\|1066487_1066814_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B0Y2R7	Lactobacillus_phage	7.0e-54	100.0
WP_012491255.1\|1066752_1067091_+\|head	phage head closure protein	A0A0N7IRA3	Lactobacillus_phage	2.2e-58	100.0
WP_012491331.1\|1067074_1067404_+	hypothetical protein	A0A1B0Y3M9	Lactobacillus_phage	3.1e-57	100.0
WP_012491332.1\|1067393_1067777_+	hypothetical protein	A0A1B0YC24	Lactobacillus_phage	2.6e-68	100.0
WP_012491333.1\|1067788_1068436_+	hypothetical protein	A0A1B0Y6C3	Lactobacillus_phage	1.2e-118	100.0
WP_003595114.1\|1068512_1068878_+	hypothetical protein	A0A1B0Y865	Lactobacillus_phage	4.6e-62	100.0
WP_012491334.1\|1068958_1069120_+	hypothetical protein	A0A1B0Y4R4	Lactobacillus_phage	5.7e-25	100.0
WP_014566481.1\|1069139_1072310_+\|tail	phage tail tape measure protein	A0A1B0YA78	Lactobacillus_phage	0.0e+00	99.9
WP_012491336.1\|1072316_1073012_+	hypothetical protein	A0A1B0Y2S2	Lactobacillus_phage	8.3e-129	100.0
WP_012491337.1\|1073008_1077412_+\|tail	phage tail protein	A0A1B0Y2S0	Lactobacillus_phage	0.0e+00	100.0
WP_012491263.1\|1077440_1077866_+	DUF1617 family protein	A0A1B0Y2S1	Lactobacillus_phage	8.8e-73	100.0
WP_012491338.1\|1077868_1078138_+	hypothetical protein	A0A1B0Y3N0	Lactobacillus_phage	1.3e-40	100.0
WP_012491339.1\|1078185_1078572_+	hypothetical protein	A0A1B0YC31	Lactobacillus_phage	5.6e-66	100.0
WP_004562059.1\|1078552_1078759_+	hypothetical protein	A0A1B0YE97	Lactobacillus_phage	1.4e-12	100.0
WP_012491341.1\|1078755_1079217_+\|holin	phage holin	A0A1B0Y6C9	Lactobacillus_phage	1.2e-70	100.0
WP_012491342.1\|1079218_1080271_+	peptidoglycan recognition protein	A0A1B0Y4R9	Lactobacillus_phage	2.3e-207	100.0
1080353:1080371	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1346590 : 1402287

Leptospira_phage(28.57%)

transposase,tRNA,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003599410.1\|1346590_1347520_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	6.5e-20	29.9
WP_012491515.1\|1347958_1348669_+	hypothetical protein	NA	NA	NA	NA
WP_012491519.1\|1350560_1351142_-	ATP-binding protein	NA	NA	NA	NA
WP_012491520.1\|1351237_1352317_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_012491521.1\|1352321_1353254_-	SIR2 family protein	NA	NA	NA	NA
WP_012491522.1\|1353322_1353643_-	hypothetical protein	NA	NA	NA	NA
WP_012491523.1\|1353824_1355579_-	hypothetical protein	NA	NA	NA	NA
WP_012491524.1\|1356184_1356373_+	hypothetical protein	NA	NA	NA	NA
WP_012491525.1\|1356374_1356554_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_012491526.1\|1356668_1357277_+\|transposase	transposase	NA	NA	NA	NA
WP_157847124.1\|1357201_1357591_+\|transposase	transposase	S5VLC8	Leptospira_phage	5.1e-11	37.1
WP_016364311.1\|1357481_1357946_+\|transposase	transposase	NA	NA	NA	NA
WP_014951865.1\|1357942_1358149_+\|transposase	transposase domain-containing protein	S5VTD3	Leptospira_phage	2.9e-05	40.7
WP_003565106.1\|1358455_1359067_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_012491531.1\|1359242_1359725_-	GAF domain-containing protein	NA	NA	NA	NA
WP_003565110.1\|1359901_1361605_+	septation ring formation regulator EzrA	NA	NA	NA	NA
WP_003574834.1\|1361913_1363071_+	cysteine desulfurase	NA	NA	NA	NA
WP_012491532.1\|1363087_1364305_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_003570094.1\|1364610_1365264_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_014566514.1\|1365637_1368280_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.7e-151	41.4
WP_012491533.1\|1368572_1369850_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_003565122.1\|1370041_1370686_+	HAD family phosphatase	NA	NA	NA	NA
WP_003565124.1\|1370747_1371416_+	DNA repair protein RadC	NA	NA	NA	NA
WP_003565127.1\|1371555_1372557_+	rod shape-determining protein	NA	NA	NA	NA
WP_012491534.1\|1372645_1373506_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003574845.1\|1373507_1374038_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_012491535.1\|1374051_1374708_+	cell division inhibitor	NA	NA	NA	NA
WP_003565134.1\|1374708_1375506_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_003565136.1\|1376171_1376828_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003565139.1\|1376840_1377479_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	39.5
WP_003565141.1\|1377475_1378288_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012491536.1\|1378520_1379954_+	cardiolipin synthase	NA	NA	NA	NA
WP_003565145.1\|1380038_1380158_-	DUF4044 domain-containing protein	NA	NA	NA	NA
WP_003565147.1\|1380508_1380841_+	hypothetical protein	NA	NA	NA	NA
WP_003565149.1\|1381016_1381448_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_003565152.1\|1381450_1382392_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_003565154.1\|1382404_1382770_+	cell division protein FtsL	NA	NA	NA	NA
WP_014566515.1\|1382766_1384914_+	penicillin-binding protein	NA	NA	NA	NA
WP_003565157.1\|1384928_1385894_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_012491540.1\|1385924_1387304_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_003570121.1\|1387303_1388395_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_003565163.1\|1388400_1389255_+	cell division protein FtsQ/DivIB	NA	NA	NA	NA
WP_003565166.1\|1389364_1390711_+	cell division protein FtsA	NA	NA	NA	NA
WP_003574874.1\|1390735_1391995_+	cell division protein FtsZ	NA	NA	NA	NA
WP_003565171.1\|1392012_1392468_+	cell division protein SepF	NA	NA	NA	NA
WP_003565173.1\|1392479_1392773_+	YggT family protein	NA	NA	NA	NA
WP_012491541.1\|1392779_1393559_+	RNA-binding protein	NA	NA	NA	NA
WP_012491542.1\|1393616_1394399_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_012491543.1\|1394645_1397432_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	5.4e-86	27.0
WP_003570139.1\|1397444_1397666_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_003565182.1\|1397802_1398708_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA
WP_003658327.1\|1398883_1400320_+	MFS transporter	NA	NA	NA	NA
WP_003565187.1\|1400416_1401628_-	toxic anion resistance protein	A0A291I9K4	Lactobacillus_phage	1.5e-32	26.3
WP_003578969.1\|1401624_1402287_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA

DBSCAN-SWA_7

2013922 : 2035762

unidentified_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012491745.1\|2013922_2014684_+\|protease	matrixin family metalloprotease	G9I094	Helicoverpa_zea_nudivirus	1.7e-05	53.1
WP_003599410.1\|2014851_2015781_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	6.5e-20	29.9
WP_012491746.1\|2015905_2016673_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_012491747.1\|2016985_2018581_+	hypothetical protein	NA	NA	NA	NA
WP_003566275.1\|2019281_2019611_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012491748.1\|2019987_2020632_+	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_012491750.1\|2022181_2022826_-	hypothetical protein	NA	NA	NA	NA
WP_012491751.1\|2022806_2023097_-	hypothetical protein	NA	NA	NA	NA
WP_103152732.1\|2023526_2024313_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012491754.1\|2025011_2025533_-	hypothetical protein	NA	NA	NA	NA
WP_123827219.1\|2025705_2026822_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-27	32.6
WP_003595460.1\|2028081_2028990_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_003599410.1\|2029273_2030203_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	6.5e-20	29.9
WP_012491757.1\|2030316_2031213_-	proline iminopeptidase-family hydrolase	NA	NA	NA	NA
WP_014566584.1\|2031216_2032074_-	M55 family metallopeptidase	NA	NA	NA	NA
WP_012491759.1\|2032073_2033159_-	M42 family peptidase	NA	NA	NA	NA
WP_012491760.1\|2033187_2034807_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002816607.1\|2035078_2035762_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-60	51.8

DBSCAN-SWA_8

2474908 : 2536772

unidentified_phage(28.57%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003567328.1\|2474908_2475187_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003580845.1\|2475210_2475495_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003588783.1\|2475688_2475985_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_014566636.1\|2476086_2477442_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003580849.1\|2477747_2478059_-	hypothetical protein	NA	NA	NA	NA
WP_003567340.1\|2478131_2478482_-	hypothetical protein	NA	NA	NA	NA
WP_012491940.1\|2478655_2480035_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_012491943.1\|2482703_2482841_-	hypothetical protein	NA	NA	NA	NA
WP_016370360.1\|2483209_2484328_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_003567351.1\|2484332_2485139_+	response regulator transcription factor	NA	NA	NA	NA
WP_016370359.1\|2485500_2485698_-	hypothetical protein	NA	NA	NA	NA
WP_014566639.1\|2486244_2486484_+	hypothetical protein	NA	NA	NA	NA
WP_003599800.1\|2486756_2486930_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003591780.1\|2486968_2487142_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_012491945.1\|2487463_2487688_+	hypothetical protein	NA	NA	NA	NA
WP_014566641.1\|2488002_2488167_-	hypothetical protein	NA	NA	NA	NA
WP_012491947.1\|2488404_2489205_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012491948.1\|2489493_2489652_-	hypothetical protein	NA	NA	NA	NA
WP_003599808.1\|2489767_2490100_-	hypothetical protein	NA	NA	NA	NA
WP_014566643.1\|2490355_2491024_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003588837.1\|2491004_2491196_-	hypothetical protein	NA	NA	NA	NA
WP_003580886.1\|2491514_2491850_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003580888.1\|2491968_2492565_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_012491950.1\|2492835_2493144_-	hypothetical protein	NA	NA	NA	NA
WP_003567374.1\|2493279_2493495_-	hypothetical protein	NA	NA	NA	NA
WP_003567376.1\|2493491_2493725_-\|bacteriocin	Blp family class II bacteriocin	NA	NA	NA	NA
WP_014566644.1\|2493996_2494950_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	4.8e-10	24.6
WP_003580891.1\|2495154_2495889_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012491951.1\|2495914_2497078_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_012491952.1\|2497588_2498965_-	class II fumarate hydratase	NA	NA	NA	NA
WP_012491953.1\|2499097_2499856_-	hypothetical protein	NA	NA	NA	NA
WP_014566645.1\|2500147_2501755_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_003596096.1\|2502142_2504860_+	HAD-IC family P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	1.2e-61	29.1
WP_003580900.1\|2505159_2505525_+	hypothetical protein	NA	NA	NA	NA
WP_003585579.1\|2505678_2507052_-	MFS transporter	NA	NA	NA	NA
WP_012491954.1\|2507091_2508621_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003567401.1\|2508866_2509058_+	hypothetical protein	NA	NA	NA	NA
WP_003567403.1\|2509186_2509825_+	cation transporter	NA	NA	NA	NA
WP_003567405.1\|2509845_2510178_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003567408.1\|2510298_2511240_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012491956.1\|2511236_2512133_-	metal ABC transporter permease	NA	NA	NA	NA
WP_003567413.1\|2512129_2512873_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-12	25.9
WP_012491957.1\|2513148_2514615_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_012491958.1\|2514815_2515085_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_003599410.1\|2515252_2516182_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	6.5e-20	29.9
WP_003567418.1\|2516220_2516340_-	putative metal homeostasis protein	NA	NA	NA	NA
WP_003576335.1\|2516540_2517458_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567422.1\|2517697_2518339_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012491959.1\|2518456_2519089_-	NUDIX hydrolase N-terminal domain-containing protein	NA	NA	NA	NA
WP_003599857.1\|2519245_2519770_-	hypothetical protein	NA	NA	NA	NA
WP_012491960.1\|2520032_2521868_+	membrane protein	NA	NA	NA	NA
WP_003585593.1\|2522018_2522921_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567431.1\|2523164_2523314_+	hypothetical protein	NA	NA	NA	NA
WP_012491961.1\|2523918_2526312_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_012491962.1\|2526486_2527671_-	hypothetical protein	NA	NA	NA	NA
WP_014566650.1\|2527905_2529747_-	ATP-binding protein	NA	NA	NA	NA
WP_012491964.1\|2529913_2530267_-	CrcB family protein	NA	NA	NA	NA
WP_003567441.1\|2530260_2530671_-	CrcB family protein	NA	NA	NA	NA
WP_014566651.1\|2531260_2531548_-	hypothetical protein	NA	NA	NA	NA
WP_012491966.1\|2531722_2531983_+	2-phosphoglycerate dehydratase	W6LP63	Streptococcus_phage	5.0e-10	61.8
WP_003567447.1\|2532364_2533312_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567449.1\|2533371_2534145_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-24	38.3
WP_003567451.1\|2534144_2534927_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003606005.1\|2534923_2535727_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003599410.1\|2535842_2536772_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	6.5e-20	29.9

DBSCAN-SWA_9

2992732 : 3004101

uncultured_Caudovirales_phage(37.5%)

capsid,terminase,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012492208.1\|2992732_2993371_-	helix-turn-helix domain-containing protein	L0P7E1	Lactobacillus_phage	2.4e-05	27.6
WP_003594046.1\|2993538_2993814_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012492209.1\|2993881_2994103_+	hypothetical protein	NA	NA	NA	NA
WP_012492211.1\|2994213_2994405_+	hypothetical protein	NA	NA	NA	NA
WP_012492212.1\|2994451_2994742_+	hypothetical protein	NA	NA	NA	NA
WP_014566704.1\|2994738_2994927_+	hypothetical protein	NA	NA	NA	NA
WP_014566705.1\|2994910_2995723_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	6.7e-13	34.2
WP_012492215.1\|2995735_2997322_+	primase	A0A1B1P7L5	Bacillus_phage	4.0e-25	27.9
WP_012492216.1\|2997647_2997983_+\|head	phage head closure protein	NA	NA	NA	NA
WP_012492217.1\|2997987_2998173_+	hypothetical protein	NA	NA	NA	NA
WP_014952495.1\|2998169_2998592_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	1.2e-21	45.4
WP_010489224.1\|2998708_2999179_+\|terminase	phage terminase small subunit P27 family	M1PKP2	Streptococcus_phage	4.6e-06	26.5
WP_012492218.1\|2999175_3000879_+\|terminase	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	2.3e-116	42.1
WP_014952496.1\|3000844_3001024_+	hypothetical protein	NA	NA	NA	NA
WP_010489222.1\|3001028_3002210_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	2.8e-60	35.5
WP_012492220.1\|3002196_3003753_+\|capsid	phage major capsid protein	A0A2H4J9X8	uncultured_Caudovirales_phage	4.6e-34	32.0
WP_003574397.1\|3003807_3004101_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017475

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection