CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	1 crisprs	WYL,DEDDh,cas3,DinG,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017532_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017532_1

942406-942504

Orphan

Consensus_repeat	Method
CGAGCGGCTGCTGGTGGTGACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017532_1

>merge|NC_017532|1|942406-942504|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCGCGCCGACAATGGTCCGCTGCACGACTGGCTTGCCGCCCATGCCGGGGACTGCGAGCGGCTGCTGGTGGAGACCCG

>NC_017532|1|1|942406-942504|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCG	CGCCGACAATGGTCCGCTGCACGACTGGCTTGCCGCCCATGCCGGGGACTG
CGAGCGGCTGCTGGTGGAGACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017532.1\|WP_017245379.1\|940633_941197_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NC_017532.1\|WP_014595862.1\|941265_942240_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NC_017532.1\|WP_014595865.1\|944454_946656_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_017532.1\|WP_181453314.1\|949324_950380_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_017532.1\|WP_011912105.1\|933949_934627_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_017532.1\|WP_014595871.1\|951250_952378_-\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NC_017532.1\|WP_011912103.1\|931926_932610_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_017532.1\|WP_014595866.1\|946866_948105_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017532.1\|WP_014595870.1\|950876_951254_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_017532.1\|WP_014595864.1\|943471_944458_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_017532.1\|WP_014595869.1\|950415_950820_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_017532.1\|WP_011912104.1\|932599_933868_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_017532.1\|WP_011912110.1\|939207_940503_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NC_017532.1\|WP_014595857.1\|934629_935349_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|182136
NC_017532.1\|WP_014595860.1\|938027_939116_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NC_017532.1\|WP_014595872.1\|952471_953248_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NC_017532.1\|WP_014595858.1\|935338_935746_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NC_017532.1\|WP_013981825.1\|942962_943475_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_017532.1\|WP_014595867.1\|948248_949328_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_017532.1\|WP_014595859.1\|935774_937928_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739

Protein	Function_ID	Function_description	E-value
NC_017532.1\|WP_017245379.1\|940633_941197_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	9.12707e-73
NC_017532.1\|WP_014595862.1\|941265_942240_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	2.56429e-58
NC_017532.1\|WP_014595865.1\|944454_946656_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_017532.1\|WP_181453314.1\|949324_950380_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.52175e-45
NC_017532.1\|WP_011912105.1\|933949_934627_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.15786e-15
NC_017532.1\|WP_014595871.1\|951250_952378_-\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	3.32528e-98
NC_017532.1\|WP_011912103.1\|931926_932610_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.52534e-76
NC_017532.1\|WP_014595866.1\|946866_948105_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.66901e-23
NC_017532.1\|WP_014595870.1\|950876_951254_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.84602e-49
NC_017532.1\|WP_014595864.1\|943471_944458_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.95166e-93
NC_017532.1\|WP_014595869.1\|950415_950820_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.39481e-22
NC_017532.1\|WP_011912104.1\|932599_933868_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.91571e-47
NC_017532.1\|WP_011912110.1\|939207_940503_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.18727e-171
NC_017532.1\|WP_014595857.1\|934629_935349_+\|phosphotransferase	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.38787e-57
NC_017532.1\|WP_014595860.1\|938027_939116_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NC_017532.1\|WP_014595872.1\|952471_953248_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.95674e-123
NC_017532.1\|WP_014595858.1\|935338_935746_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	3.92651e-45
NC_017532.1\|WP_013981825.1\|942962_943475_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.61313e-82
NC_017532.1\|WP_014595867.1\|948248_949328_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.30335e-32
NC_017532.1\|WP_014595859.1\|935774_937928_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	5.08725e-78

>NC_017532.1|WP_014595862.1|941265_942240_+|XdhC-family-protein
MDSVDLAVLRRARDWLRDGHAVVLYTVIETWGSAPRPVGSLLALRGDGRVEGSVSGGCVEDDLLARVMADEPPSTCQLITYGVSKEESARFGLPCGGTLRLLQEPLRDAGWIDELLSRCAAHERLLRRLDLASGAVVLQPAGREAVLQFDGHTLRAPFGPAWRLLMIGAGQLSRYVADLAHGLGFEVLICDPREGYAHDWNPAAVRFVPGMPDDAVLAIEPDAHTAIVALTHDPRLDDMALLTALQSEAFYVGALGSRVNSEKRKARLLSLGLGERQVQRLHGPIGLPIGSRTPAEIALSLMAEVVALKNGALAPSLSAQQRCA
>NC_017532.1|WP_017245379.1|940633_941197_+|DJ-1/PfpI-family-protein
MSKRVLIPIADGSEDLEAVTLIDVLRRAEFDVVVASVEERRMLTCARGTRITADTMLLDVLAQDFDLIVLPGGMPGAKTLGELEPLAERVRQQARAGLDYAAICAAPAVALHPYGVLKGRQVTCYPGMSDNLTGTHFLDQPVVVDGNCITSQGPATALEFALTLVERLAGRGKRREVADAMLVPATN
>NC_017532.1|WP_011912110.1|939207_940503_-|NCS2-family-permease
MLEKLFQLKAHNTTLRTEILAGITTFLTMAYILFVNPSILAETGMDHGAVFVATCLAAAIGSAIMGLVANYPIALAPGMGLNAFFTYTVVLTMGYTWQTALGAVFLSGLIFFGLSIFKIREWIIHSIPLALRAGIAAGIGLFLAIIALKNAGIVVDNPATLVGLGDLSAGGPLLACLGFFLIAALAYRKVTGAVMIGILVVTGLSILLGLSQLNGVVSMPPSLAPTFMQLDIMGALDIGLISVIFAFLFVDLFDTSGTLIGVAQKAELLDKDGKMPRLGRALLADSTATMAGAALGTSTTTSYIESAAGTAAGGRTGLTACVVALLFLLSLFFAPLAGAVPAYATAPALLFVAVLMMSSLAGIDWDDLTVAAPVAIAALAMPLTFSIANGIAFGFIAWTAIKLLAGRWRELSPAMWVLSALFVVKLGWFTG
>NC_017532.1|WP_014595860.1|938027_939116_-|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MPLPQLDPAQYDAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFEQGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPLDEAWQAEAEQLAADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAFTQPNGEVCQKMLNWTHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR
>NC_017532.1|WP_014595859.1|935774_937928_+|sulfatase-like-hydrolase/transferase
MTDATARAQAVQPGLRHHLLFMAGSALALLTLLALLRLALLLFNRELLGDASLATLLEGFGNGLRFDLRVLVYIFVPLSLAVLSPHAVAARRLQRIWLTTCASLAILLGVIELNFYQEFHQRLNALVFQYLGEDPATVLSMLWHGFPVVTLLSVWGGLTLVWALLLRWLDGRCRPRGVSQMRRSPARPPLAWHWRGATLLVLVLISVVAARGTLRQGPPLRWGDAFTTDSVFINQLGLNPALTLYEAAKNRYSDHRDNAWEAVLPEDEALAVTRELLLTGNDQLADPELAAVRRDYRAPEVGRLPVRNVVVILMESFAGRYVGALGSRDGITPHFDRLAGEGLLFERFFANGTHTHQGMFASMACFPNLPGFEYLMQSPEGGNRFSGLPQLLSARAFNDVYVYNGDFAWDNQAGFFGNQGMTRFVGRNDYVDPVVADPTWGVSDQDMFDRAVQELGALAPDEPFYALLQTLSNHTPYALPDPLPVPAVTGHGSQDAHLTAMRYSDWALGRFFEQAKRQPWYKDTLFVVVGDHGFGAPEQLTEMDLFRFHVPLLLIAPGVTEQFGSRREVVGTQVDVVPTIMGRLGGEVRHQCWGRDLLALDERDPGFGIIKPSGSDQTVAMIRGEQILVQPKDLEPRLYRYRLGADASAQRIEDADNAASMLRQLQAYLQVATGSLLANTAGDRERKETATGETLARAAADGEPPIAPKGQRGPREG
>NC_017532.1|WP_014595858.1|935338_935746_+|diacylglycerol-kinase
MSHECSSESGSTVADGAALKGRSGLMRLWLAGGYSLAGLRAAYRSEAAFRQVVLLCLLLIPLAFLLEVSRVERAVLIAVVLLAPIVELLNSAIEATVDRISLELHPLSKRAKDMGSAAQLLTMLLIALIWAVILL
>NC_017532.1|WP_014595857.1|934629_935349_+|phosphotransferase
MSRAFVLPAREARTSTFQRWWDMRGEWVEEPNRRRAGESGVQRIRPRDLQQSLLYCKRQIGHLYRSPLHPFGRPTVLRECHALQALRDLGVRVPELIYCGTRQQAGQWQALLVTAELQGFVSLEDWYDEGMPGYYGSVVQARMLDAVGRTLGRLHHARWQHGCCYPKHIFLRVHGQDDGAQVEVALLDLEKSRRRLRRHAAARHDLRQLRRHCTAMSEPDWQRLLTAHAGYREVRCDVA
>NC_017532.1|WP_011912105.1|933949_934627_+|class-I-SAM-dependent-methyltransferase
MPTSSPIELEFSRKYDRQHAYEYLHKHQDGLARRLSHWRDEQMARRALKIAGEPDLVLDLPCGAGRFWPLLAEHPSRMIFAADNSADMLAIAEAAQPLEVVKRVETFQTSAFAIDMGDNAVDSIFCMRLLHHIADPAHRLAMLREFHRVTRDTLIVSLWVDGNYKAWKRRRLERRRPAKDNQNRFVVARSVIEAEFAEAGFDILDRSDFLPGYAMWRVYVLRKRG
>NC_017532.1|WP_011912104.1|932599_933868_+|HAMP-domain-containing-histidine-kinase
MLAKQPFARRIVIAFTLMTLVVSGVFSLGIVAVVYFVESQLVTGELSRELDIVLHEDLPSGRPPRLDAQTRFFSTALPDYPLPEGFATLPEGFTEVVRGDEAYYVYVRDLDGERYVLMEDQNEFEERENALFKTVLAGFLLSVLGAWLLGRLMAHKVMAPVSRLANQVRHRDQLHPLAPPLALQYVDDEVGHLAAAFDSTLGQLRQTLERERLFTADVSHELRTPLMVMLGACELLLAGDLPERSRRQAERIQRAAEEMQALVDTFLLLARARPDQQEVFGGSAGLADVAREQSERWGPPMREKGLAFEVVREGDDQQTYNHTLLGTVMSNLLRNALHYTEHGQVRLVLEHGGFRVEDTGVGIPVDQQERMFQPFVRGAEGRGEGLGLGLSLVRRICAHQGWTVEVHGREPCGSCFAVRLAS
>NC_017532.1|WP_011912103.1|931926_932610_+|response-regulator-transcription-factor
MRILVIEDNRDILANVLDYLELKGYLVDCAQDGLSGLHLAATQEYDLIVLDIMLPGIDGYQVCKRLREDARRDTPIIMLTARDALPDRIKGLEAGADDYLIKPFALSELVARIEAVLRRSQGSRRRQLQVGDLVYDLDTLAVSRGGVPIRLNPIGHKLLAILMQRSPAVVRREALEEALWGDNVPDSDSLRSHIHQLRQALDKPFERPLLHTVHGVGFRLAEQSDAR
>NC_017532.1|WP_013981825.1|942962_943475_+|(2Fe-2S)-binding-protein
MSEHSSAAGQTCTISLELNGERRELQVQPWTTLLDLLRDQLGLTGTKKGCDHGQCGACTVLLDGRRINSCLTLAVMHDGARLTTIEGLASTEALHPLQAAFVKHDAFQCGYCTPGQICSAAGLAAEHRASSRDEIREHMSGNLCRCGAYPNILAAIEEALPVLRGQEGAQ
>NC_017532.1|WP_014595864.1|943471_944458_+|xanthine-dehydrogenase-family-protein-subunit-M
MTPFSYQRPERIDQAIALHGPDSRYIAGGTNLLDLMKENVLHPGQLIDINGLPLREIEQTAEGGLRIGALVSNADLAWHPQIEQRYPLLSKAILAGASPQLRNMASTGGNLLQRTRCYYFYDTATPCNKREPGSGCGAHDGRNRIHAILGASEACVAVHPSDMCVALAALDARVHIEGPHGQRRVDLVDFHRLPGDQPQLDNVLTEGELITAVELPVEGFASHCAYLKVRDRASYAFALVSVAAALEVDGDIIRRARIALGGVAHKPWRLEEAEDLLSGQRAEPARFAAAADRLLQGAQPLADNAFKIDLAHRAIVRALTEAAGGTVR
>NC_017532.1|WP_014595865.1|944454_946656_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MNSANSPLGKPLDRVDGPLKVTGKACYAAEAEVPGLLYGAVVSSSIARGRVTRIDAAAAEALPGVRLVLTHQNRPPVASYDKPYEDEDAAEGSPFRPLYNDRVLYSGQPLALVVAETQALARHAASLVRVEYEVEAHQTDLQAVLDQAHDAPAELPEPRGDFDSAFAAAANRIDREYETPVEHHNPMEPHASIVQYQPGGELLIHDKTQGVQNCQRYLEQVFDMEGKIRVLSPFVGGAFGSGLRPQYQLPLAVMAALKLKAAVRVELTRQQMFTFGYRPRTVQQLKLAADGDGRLQAIEHRAIGQTSRFEDFTEHEVEWSGMLYACDNVRLGYRLAPLDVYTPLDMRAPGATIGVYALECAMDELAYEVGIDPLELRLRNYTETNGNEGKRYSSKELRACYQQGAERFGWSRRPTQPRSLRDGHQLVGMGMATGVWEAMQMPASARACLDADGRLLVTSATADIGTGTYTAMTQIAADAMGLPMSEVEFRLGDSSLPQAPLEGGSATVSSVGSAVQRACAGLRQKLLDAVQQSPASPFTGASLDAVEFVDGQLRLKTGEHAVALRDIVQVSGALDAEASVKPDEKRDAWATATHSAVFVEVRVDEDLGTIKVSRVVSAIAAGRIVNPKTASNQIVGGVVWGIGQALHEETLIDHRLGRYMNHNLAEYHIPVNADIPEVEVIFVEEHDEVVNELGSKGVGEIGIVGVAAAVANAIYNATGRRVRDLPITLDKLL
>NC_017532.1|WP_014595866.1|946866_948105_-|acyltransferase
MARTEHFIGLEWLRFLLAIYVVLFHTVHAYVEDEPTWLSELAGVGFFATSSFFVLSGFLLAHVYCRQGELREPARHFLGKRLANLYPLHLFSLLLTAIVLTIIAKLGIPPDDAKASLRYVVYDTNEELSGEARDALEYFMNNRELAFNFILQLLMLHAWNPLYLTFNPPLWSISTLFFFYLCFPLLAPRLMRLRHKGWWLLAIAALYLLPPLWAIQQDAYGIPVTGMLHRMPLLRLPEFLAGILLCGLFREWRAAGGQLGIAARLALGAFVLASFLATVWLLKGERYWYFLLHNGLLLPAQLALVWLCALIATPRSAAVVGWSQRLGAASLPLFVLHVPVFILFSRSEKLLGAVSAECLEDWADCVAQAGELALTPAFYPLYLGLCIVVCVLAQERAVVPVRQFLRRRVLKV
>NC_017532.1|WP_014595867.1|948248_949328_+|serine-hydrolase
MLLPAQLRSPFAALCLLLITLSLAQRAVAQDSIEWSGPFLARLAQVDRQTPGQLGVYVKDMQTGISVSYHGEDAWYLASTVKVPIAIAVMRRVEQDDLTLDSPVTLLASDYVDGAGPTNSHAPGKALSVRYLLDQMLIHSDNTASDMLIRLVGIEQVNAVTRELVPEGFGPITTLADVRRLIYGELHPAARTLSGKDFLALKRQPNDAGRLALLPRLIGVERSALVPISLGEAYERYYATPFNSGTLKAYGDLLSALDAGTALGPASTEYLLSVMRRVETGGRRIKAGLPSGTGFAHKTGTQRARICDAGLVDQPGAADSTSQRLIIVACVRGVASTTQAERALRGTGEAVAAAGLIRR
>NC_017532.1|WP_181453314.1|949324_950380_+|serine-hydrolase
MSRLIALGALLVPLAGLTACTEQAEATWKDGLEQELRRVDEASPGKLGVYIKHLGEDAELRYDAERFWYLGSAVKVPIALAVLQGVDDDEFRLDQRLTLEAEDKVDGSGDLVWQDNGVDYSLRDLLKEMLIESDNTAANMLIRLVGEDALNQRTRKSMGGDFEAITSFTQVRRDVYGEVHPDAARLDNMQLVELASAPFSKPRYEALARVLKLQQDELKAASMEQAYERYYARQLNSSSLVAYGTMLEKLVRGELLSAESRDLLYGFMKLDSYDNYRLEAGLPEDVPFIQKTGTQLERACHVGVIEPQDERRAIVVVACAEGLDEGKEAGSLFEQVGQAISKALLSEAPPN
>NC_017532.1|WP_014595869.1|950415_950820_-|carboxymuconolactone-decarboxylase-family-protein
MSASTRYTDGLAKLEEIDGEAGRKVIDSLQAIAPDLARYVIEFPFGDIYQRPGLDLPQRELATVAALTALGHCQPQLAVHVHGALNVGCTPEQIVEVVIQMAVYAGFPAALNGMHTVKTVFAERGLLPTGNANE
>NC_017532.1|WP_014595870.1|950876_951254_-|MerR-family-transcriptional-regulator
MNEVPVRLSIRQFAARTGLSADTLRYYEKIGLLRQVARDSSGFRVYGPRDLEWIGFILRLKDTGMALDDIIRYADLRECGDTTLAARQALLEEHAARLQERIQRDHDHLDALRAKIALYRQQTSA
>NC_017532.1|WP_014595871.1|951250_952378_-|methyltransferase
MPILDTPYASLDLIRQPEQPNEPLQAFDAADEYVLATLHEQRLPAATRVLILNDSFGALACALAAHVEVTSSGDSHLAHLALQKNLARNDLPAERVRFVPASEVSEGPFDRVLIRVPKTLALLEEQLIRLHDQLAPGAQVIAAAMIKHLPRAAGDLLEQYIGPVQASLAVKKARLLSATPSAKPVPRSPYPTRYQLDQPKLELLNHANLFCREGLDIGTRAFLPHLPKALGALRVADLGCGNGVLGIVYALGNPQAELTLVDESYMAVQSARENWQAILGERPADIRAGDGLAEQSPGSLDLVLCNPPFHQQQVVGDFLAWRMFTQAKAALTKGGELWIVGNRHLGYHLKLKRLFGNAEQVAATPKFVVLRSIKA
>NC_017532.1|WP_014595872.1|952471_953248_+|ferredoxin--NADP-reductase
MTASEEKFTRQRLLEVQTLTPNLFTLRTSRDPGFRFTAGQFARLGVRKPSGCIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLEVGDELLVDKQAFGFLTLDRFPDGRDLWLLATGTGIAPFLSILQDFEAWQRFERIILVYSVREARELAYQQLIAELPQRDYLEGLGEKLLYLPVVTRERVPGALHGRITTLIENGELERAADLQLTPEHSRIMLCGNPQMIEDTRAVLKARDLNLAMTRRPGQVAVENYW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57089 : 68401

Bacillus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011911301.1\|57089_57479_-	response regulator	W8CYM9	Bacillus_phage	3.4e-15	40.3
WP_014595340.1\|57475_60352_-	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	4.5e-27	33.5
WP_014595341.1\|60479_62120_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.1e-17	35.8
WP_003282388.1\|62112_62502_-	response regulator	W8CYM9	Bacillus_phage	2.0e-07	31.6
WP_014595342.1\|62498_64910_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	3.8e-27	35.1
WP_011911305.1\|64986_65373_-	response regulator	W8CYM9	Bacillus_phage	1.2e-12	35.0
WP_014595343.1\|65422_68401_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.1e-27	34.3

DBSCAN-SWA_2

1660227 : 1671584

Streptomyces_phage(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013982337.1\|1660227_1663749_+	DNA polymerase III subunit alpha	A0A291AVA6	Streptomyces_phage	5.2e-203	37.4
WP_014596298.1\|1663933_1664884_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_043942142.1\|1665072_1666299_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A1V0SI91	Klosneuvirus	2.1e-05	20.7
WP_011912718.1\|1666466_1668098_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.7e-153	52.1
WP_013982341.1\|1668094_1668940_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.1e-50	40.7
WP_014596300.1\|1668974_1670264_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	8.2e-138	60.7
WP_014595397.1\|1670381_1671584_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.0e-109	54.4

DBSCAN-SWA_3

2138743 : 2152522

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014596608.1\|2138743_2141275_+	pyrroloquinoline quinone biosynthesis protein PqqF	A0A1V0SJA4	Klosneuvirus	3.5e-15	29.0
WP_014596609.1\|2141532_2142720_+	porin	NA	NA	NA	NA
WP_013982686.1\|2143033_2144197_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA
WP_085987733.1\|2144126_2146766_+	PAS-domain containing protein	A0A2K9L5I4	Tupanvirus	2.0e-13	28.6
WP_014596611.1\|2146805_2147810_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_014596612.1\|2147894_2148878_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	7.6e-144	75.2
WP_014596613.1\|2148874_2149207_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	7.7e-40	73.4
WP_014596614.1\|2149203_2149506_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.2e-23	58.0
WP_014596615.1\|2149505_2149865_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.8e-34	63.3
WP_014596616.1\|2149864_2150257_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.5e-46	70.5
WP_014596617.1\|2150485_2151754_+	MFS transporter	NA	NA	NA	NA
WP_011913132.1\|2151853_2152522_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	7.6e-87	76.7

DBSCAN-SWA_4

2614279 : 2654712

Burkholderia_virus(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014596893.1\|2614279_2615242_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_004152114.1\|2615228_2615717_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_043942199.1\|2615758_2615977_-	diguanylate cyclase	NA	NA	NA	NA
WP_043942200.1\|2618360_2618816_-	thioredoxin TrxC	F2WLG3	Lausannevirus	1.8e-10	35.9
WP_014596898.1\|2618796_2620677_-\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	8.6e-104	41.3
WP_014596899.1\|2620704_2622135_-	cardiolipin synthase	NA	NA	NA	NA
WP_014596900.1\|2622152_2625002_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.3e-129	41.5
WP_014596901.1\|2625098_2625668_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_003116633.1\|2626206_2626470_-	hypothetical protein	NA	NA	NA	NA
WP_085987735.1\|2626542_2627764_+\|transposase	IS3-like element ISPst4 family transposase	Q8W6R2	Burkholderia_virus	3.4e-117	75.8
WP_014596906.1\|2628679_2629669_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	4.9e-98	53.8
WP_014596907.1\|2629909_2630608_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_003116628.1\|2630604_2631045_-	DedA family protein	NA	NA	NA	NA
WP_003116627.1\|2631046_2632165_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_003116626.1\|2632174_2632462_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_124209411.1\|2632563_2632905_+	hypothetical protein	NA	NA	NA	NA
WP_003119946.1\|2632961_2633687_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_003116624.1\|2633698_2634364_+	hypothetical protein	NA	NA	NA	NA
WP_010791789.1\|2634416_2635388_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_014596910.1\|2635745_2637737_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_014596911.1\|2637733_2638168_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_014596912.1\|2638227_2639196_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_014596913.1\|2639167_2639509_+	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_014596914.1\|2639505_2639778_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_014596915.1\|2639788_2642218_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_014596916.1\|2642214_2642949_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_013791226.1\|2642961_2643147_+	hypothetical protein	NA	NA	NA	NA
WP_014596917.1\|2643143_2644304_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_014596918.1\|2644316_2645024_+	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_014596919.1\|2645020_2646007_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_014596920.1\|2646009_2647275_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_013716013.1\|2647271_2647505_+	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_043942203.1\|2647598_2647877_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.5e-17	45.7
WP_003108490.1\|2647894_2648182_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	1.1e-15	48.1
WP_014596922.1\|2648490_2649687_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_014596923.1\|2649686_2649938_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085987735.1\|2650152_2651375_-\|transposase	IS3-like element ISPst4 family transposase	Q8W6R2	Burkholderia_virus	3.4e-117	75.8
WP_003282986.1\|2652474_2652792_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_003282984.1\|2652788_2653124_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_014595722.1\|2653185_2654712_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.2e-119	50.1

DBSCAN-SWA_5

3717155 : 3776834

Bacillus_phage(27.27%)

transposase,integrase

attL 3722356:3722372|attR 3782999:3783015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014597600.1\|3717155_3719597_+\|integrase	site-specific integrase	A0A059XK29	uncultured_phage	1.7e-11	26.5
WP_011914403.1\|3719759_3721019_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_085987738.1\|3721973_3723124_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.3e-102	66.7
3722356:3722372	attL	NA	NA	NA	NA
WP_020307713.1\|3724939_3725257_-	hypothetical protein	NA	NA	NA	NA
WP_011914418.1\|3725280_3728403_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011914419.1\|3728405_3730043_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_043942256.1\|3730039_3731326_-	TolC family protein	NA	NA	NA	NA
WP_169918116.1\|3731962_3732385_+	hypothetical protein	NA	NA	NA	NA
WP_014597607.1\|3732399_3734592_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_014597608.1\|3734592_3735282_+	hypothetical protein	NA	NA	NA	NA
WP_003298494.1\|3735278_3736082_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_003298493.1\|3736093_3736429_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_003292133.1\|3736662_3736992_-	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_148256282.1\|3738009_3738339_-	hypothetical protein	NA	NA	NA	NA
WP_011914423.1\|3738534_3738828_-	hypothetical protein	NA	NA	NA	NA
WP_003292136.1\|3739432_3739888_+	DUF305 domain-containing protein	W6GVI1	Samba_virus	1.2e-06	39.4
WP_014597611.1\|3740090_3740903_-	cytochrome c	NA	NA	NA	NA
WP_003292138.1\|3740911_3742072_-	copper resistance protein B	NA	NA	NA	NA
WP_003298487.1\|3742061_3742373_-	hypothetical protein	NA	NA	NA	NA
WP_014597614.1\|3742385_3744167_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_003292141.1\|3744812_3746576_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_014597615.1\|3746758_3747199_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_003292143.1\|3747225_3747498_-	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	6.6e-05	41.5
WP_080558872.1\|3747571_3749926_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-84	36.4
WP_080505060.1\|3749931_3750102_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_003292145.1\|3750686_3751364_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	4.3e-29	31.7
WP_169918117.1\|3751366_3752740_+	heavy metal sensor histidine kinase	A0A1V0SGX0	Hokovirus	9.7e-12	28.7
WP_024162553.1\|3752925_3753255_+	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_085987739.1\|3753474_3753774_-	hypothetical protein	NA	NA	NA	NA
WP_085987738.1\|3755027_3756178_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.3e-102	66.7
WP_043942259.1\|3756280_3756778_+	HAD family hydrolase	NA	NA	NA	NA
WP_011914454.1\|3756864_3757755_-	cation transporter	NA	NA	NA	NA
WP_019405735.1\|3758276_3758594_-	hypothetical protein	NA	NA	NA	NA
WP_014597623.1\|3758834_3760208_-	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-15	24.1
WP_013982153.1\|3760204_3760879_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-28	34.1
WP_014597624.1\|3761196_3762516_-	OprD family porin	NA	NA	NA	NA
WP_014597625.1\|3762816_3764052_+	TolC family protein	NA	NA	NA	NA
WP_014597626.1\|3764093_3765401_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014597627.1\|3765420_3768585_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_003282470.1\|3768812_3769043_-	hypothetical protein	NA	NA	NA	NA
WP_011914465.1\|3769443_3770364_+	cation transporter	NA	NA	NA	NA
WP_003089120.1\|3770757_3771156_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003089115.1\|3771230_3771581_+	mercury transporter MerT	NA	NA	NA	NA
WP_003150552.1\|3771593_3771869_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089113.1\|3771876_3772089_+	hypothetical protein	NA	NA	NA	NA
WP_003089110.1\|3772101_3775095_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	7.5e-259	47.6
WP_003150546.1\|3775098_3775509_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_003089107.1\|3775508_3775748_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_003291594.1\|3775940_3776834_-\|integrase	integrase	NA	NA	NA	NA
3782999:3783015	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage