CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021829	Listeria monocytogenes J1-220, complete genome	3 crisprs	WYL,casR,cas3,DEDDh,DinG,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021829_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021829_1

283971-284149

Orphan

Consensus_repeat	Method
TTAAGCAGTTTTGATACGAGCTC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_021829_1

>merge|NC_021829|1|283971-284149|CRISPRCasFinder
GTAAGCAAATTTGATACCAGCTCTGTTACTTTTATGCAGATGATGTTTCAATATTGTAAATCGCTTGAGAAACTGAATTTAAGCAGTTTTGATACGAGCTCAGTAACTCGCATGAATAGTATGTTTGAAGGATGTACTAGTTTTGAAGAGCTAGACTTAAGCAGTTTTGATACGAGTTC

>NC_021829|1|1|283971-284149|CRISPRCasFinder
GTAAGCAAATTTGATACCAGCTC	TGTTACTTTTATGCAGATGATGTTTCAATATTGTAAATCGCTTGAGAAACTGAAT
TTAAGCAGTTTTGATACGAGCTC	AGTAACTCGCATGAATAGTATGTTTGAAGGATGTACTAGTTTTGAAGAGCTAGAC
TTAAGCAGTTTTGATACGAGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021829.3\|WP_003734633.1\|270649_272809_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NC_021829.3\|WP_003734632.1\|269777_270533_-\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NC_021829.3\|WP_003740435.1\|288278_288584_+\|cell-wall-surface-anchor-protein	unknown	unknown	gnl\|CDD\|273478
NC_021829.3\|WP_003740428.1\|275061_276657_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_021829.3\|WP_003734773.1\|290588_290936_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003727316.1\|293099_293282_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_010958986.1\|287765_288251_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003721252.1\|287272_287746_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003725189.1\|276791_278075_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NC_021829.3\|WP_003734991.1\|285137_287207_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021829.3\|WP_003728092.1\|279168_280719_+\|allose-kinase	unknown	unknown	gnl\|CDD\|223223
NC_021829.3\|WP_014929029.1\|281352_282891_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|368260
NC_021829.3\|WP_003734774.1\|291339_291582_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_020830750.1\|288659_288926_+\|transposase	unknown	unknown	unknown
NC_021829.3\|WP_003734772.1\|289661_290279_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003734634.1\|272805_273954_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_021829.3\|WP_003728093.1\|278075_279176_+\|putative-2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|226065
NC_021829.3\|WP_003721242.1\|273958_274906_-\|ATPase-RavA	unknown	unknown	gnl\|CDD\|223786
NC_021829.3\|WP_003734775.1\|291664_292642_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_021829.3\|WP_003725184.1\|269091_269757_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|226146

Protein	Function_ID	Function_description	E-value
NC_021829.3\|WP_003734633.1\|270649_272809_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.58381e-28
NC_021829.3\|WP_003734632.1\|269777_270533_-\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.71521e-121
NC_021829.3\|WP_003740435.1\|288278_288584_+\|cell-wall-surface-anchor-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.51255e-05
NC_021829.3\|WP_003740428.1\|275061_276657_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NC_021829.3\|WP_003725189.1\|276791_278075_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NC_021829.3\|WP_003734991.1\|285137_287207_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.65689e-31
NC_021829.3\|WP_003728092.1\|279168_280719_+\|allose-kinase	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NC_021829.3\|WP_014929029.1\|281352_282891_+\|transcriptional-regulator	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	9.23286e-20
NC_021829.3\|WP_003734634.1\|272805_273954_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	7.03616e-53
NC_021829.3\|WP_003728093.1\|278075_279176_+\|putative-2-dehydropantoate-2-reductase	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NC_021829.3\|WP_003721242.1\|273958_274906_-\|ATPase-RavA	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NC_021829.3\|WP_003734775.1\|291664_292642_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.2717e-43
NC_021829.3\|WP_003725184.1\|269091_269757_-\|DUF1275-domain-containing-protein	gnl\|CDD\|226146	COG3619, COG3619, Predicted membrane protein [Function unknown].	1.87997e-68

>NC_021829.3|WP_014929029.1|281352_282891_+|transcriptional-regulator
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNNNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLTSDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEILNQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NC_021829.3|WP_003728092.1|279168_280719_+|allose-kinase
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NC_021829.3|WP_003728093.1|278075_279176_+|putative-2-dehydropantoate-2-reductase
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NC_021829.3|WP_003725189.1|276791_278075_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NC_021829.3|WP_003740428.1|275061_276657_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NC_021829.3|WP_003721242.1|273958_274906_-|ATPase-RavA
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NC_021829.3|WP_003734634.1|272805_273954_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLVDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NC_021829.3|WP_003734633.1|270649_272809_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVALLALVIIFRRRIRSYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NC_021829.3|WP_003734632.1|269777_270533_-|DUF4866-domain-containing-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NC_021829.3|WP_003725184.1|269091_269757_-|DUF1275-domain-containing-protein
MARSRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNILLFGINISEGNWAIAIQYFWPVVSFTVGIAISEVIHRRDIRRLHWRQLSVLIEAVILIGVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEYKEKQYLRNSLLYFTVILSFIIGAVVGNFFIQLFAQYAILVCAFLQFIAFMMMFIDRESKII
>NC_021829.3|WP_003734991.1|285137_287207_+|BspA-family-leucine-rich-repeat-surface-protein
MKKLSMRVILIVTVIFIAFGSANVSIAQERDTINKLPEVELGSLYTSNLITEEVAQDKPAEVENLEEAPTTDDLVQNPDVLEQLIADSDDSDLTVVNSGDFWTIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLMEVDLSGLDTSAVTTMWDMFNSCRALEELDVSHFDTSSVTNMSYMFYDNRNLEVLDVSNLDTSSVTNMYAMFEDCTSLEELDVSNFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSATEMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMFSDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLTYLFVSHNVSNFNGLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPIGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEASELKVQGINRGSKTLSVGLNYEETTISESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGEAVMVIEAPENIQAGKYTGNVVFSIKYE
>NC_021829.3|WP_003721252.1|287272_287746_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NC_021829.3|WP_010958986.1|287765_288251_+|hypothetical-protein
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NC_021829.3|WP_003740435.1|288278_288584_+|cell-wall-surface-anchor-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NC_021829.3|WP_020830750.1|288659_288926_+|transposase
MARIEYGEEIQKSLLVLYSRGSTIQSICREYGIPRYEFHKWMKLHDADKLETKEVKTFLQVRELKQQKNKLEEEILFLNEAINLLESP
>NC_021829.3|WP_003734772.1|289661_290279_+|hypothetical-protein
MLMSLSVLPLATYASETENTPTESYDGENFIATQTGNTLVIEDKKTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIATQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMGAKTLYVRVKQYRTSGYQFYKYDSYYYANASLTKLVKKTSQTKRMW
>NC_021829.3|WP_003734773.1|290588_290936_+|hypothetical-protein
MQKDTYSGIRLSVIQLIDSKKENLKENNIKLTIIKDEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
>NC_021829.3|WP_003734774.1|291339_291582_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATGIVNVKKKEYLWSTMLFEGVLVVLLSLIIVLV
>NC_021829.3|WP_003734775.1|291664_292642_-|HD-domain-containing-protein
MKITDPLYGTFEIEPVLAELIQSPLVSRLAYVHQGGSSYLVNPLWDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQIFEDFVKTSTIPAILEKYGYSFEGIFDDISKWKILEQEAPELCADRIDYTLQDLYRHRKISLAEVEEFLQALVMVDGRLYLANIALAEWFVAQYYSEVIDYFYDPLNVYSYEILAEAMRIAFQQETITTADLRLTDTELLAKLNANSDAREKIQLLASAHLEENEADFTYHHKKKMRLINPSILVDGRLIPADELSEKVRKMNDWASERSKHGIYIKATKKSKQ
>NC_021829.3|WP_003727316.1|293099_293282_+|hypothetical-protein
MYKNTVYTRGIMVLYEIGYLLEGLNGLFYFSMYKIMYIDTICVILNINLSKSILNVLIFA

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Crispr_ID: NC_021829_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021829_2

285795-286379

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NC_021829_2

>merge|NC_021829|2|285795-286379|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACGAGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGAAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NC_021829|2|1|285795-286379|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACGAGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGAAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021829.3\|WP_003734633.1\|270649_272809_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NC_021829.3\|WP_014929029.1\|281352_282891_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|368260
NC_021829.3\|WP_003740435.1\|288278_288584_+\|cell-wall-surface-anchor-protein	unknown	unknown	gnl\|CDD\|273478
NC_021829.3\|WP_003740428.1\|275061_276657_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_021829.3\|WP_003734773.1\|290588_290936_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_010958986.1\|287765_288251_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003721252.1\|287272_287746_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003725189.1\|276791_278075_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NC_021829.3\|WP_003734772.1\|289661_290279_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003728092.1\|279168_280719_+\|allose-kinase	unknown	unknown	gnl\|CDD\|223223
NC_021829.3\|WP_014929030.1\|283154_285002_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021829.3\|WP_003734774.1\|291339_291582_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_020830750.1\|288659_288926_+\|transposase	unknown	unknown	unknown
NC_021829.3\|WP_012681110.1\|293403_294231_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
NC_021829.3\|WP_003734632.1\|269777_270533_-\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NC_021829.3\|WP_003734634.1\|272805_273954_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_021829.3\|WP_003727316.1\|293099_293282_+\|hypothetical-protein	unknown	unknown	unknown
NC_021829.3\|WP_003721242.1\|273958_274906_-\|ATPase-RavA	unknown	unknown	gnl\|CDD\|223786
NC_021829.3\|WP_003734775.1\|291664_292642_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_021829.3\|WP_003728093.1\|278075_279176_+\|putative-2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|226065

Protein	Function_ID	Function_description	E-value
NC_021829.3\|WP_003734633.1\|270649_272809_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.58381e-28
NC_021829.3\|WP_014929029.1\|281352_282891_+\|transcriptional-regulator	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	9.23286e-20
NC_021829.3\|WP_003740435.1\|288278_288584_+\|cell-wall-surface-anchor-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.51255e-05
NC_021829.3\|WP_003740428.1\|275061_276657_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NC_021829.3\|WP_003725189.1\|276791_278075_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NC_021829.3\|WP_003728092.1\|279168_280719_+\|allose-kinase	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NC_021829.3\|WP_014929030.1\|283154_285002_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.47304e-32
NC_021829.3\|WP_003734632.1\|269777_270533_-\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.71521e-121
NC_021829.3\|WP_003734634.1\|272805_273954_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	7.03616e-53
NC_021829.3\|WP_012681110.1\|293403_294231_+\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	0.00019582
NC_021829.3\|WP_003721242.1\|273958_274906_-\|ATPase-RavA	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NC_021829.3\|WP_003734775.1\|291664_292642_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.2717e-43
NC_021829.3\|WP_003728093.1\|278075_279176_+\|putative-2-dehydropantoate-2-reductase	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0

>NC_021829.3|WP_014929030.1|283154_285002_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSDVITEGVPQEKPAEAENLEEIPTTDELMQNPNVLERSVADSDDSDLTVVSSGAYWTLYYNSANGEYSLRMFGNVPSSRPTAWNNYLKRIKHIEIEEATLTGDFVGYFGWFIGLKGVRIEGSDLSGVTSFQQAFSNSSLEKVIIKNNYYSNSQSLTNTKQMFFMAKNLSELDLSGLNTSFVTTMERMFEGCENLKILNLSNFDFDTSSVINMDYMFADCTNLEELDVSKFDTSSVTFMQMMFQYCKSLEKLNLSSFDTSSVTRMNSMFEGCTSFEELDLSSFDTSSVGNMQTMFQGCTNLKVLYLDKFDDNITTNKNNMFGNTPLLSYLRFSHRFTKLENIGLENTNWYDEKNWVQFSNITQLQTYNKQQSEPTGYRKGAFFSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEASELKVEGINRGGKTLSVGLNYGKTTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSVNYE
>NC_021829.3|WP_014929029.1|281352_282891_+|transcriptional-regulator
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNNNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLTSDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEILNQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NC_021829.3|WP_003728092.1|279168_280719_+|allose-kinase
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NC_021829.3|WP_003728093.1|278075_279176_+|putative-2-dehydropantoate-2-reductase
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NC_021829.3|WP_003725189.1|276791_278075_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NC_021829.3|WP_003740428.1|275061_276657_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NC_021829.3|WP_003721242.1|273958_274906_-|ATPase-RavA
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NC_021829.3|WP_003734634.1|272805_273954_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLVDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NC_021829.3|WP_003734633.1|270649_272809_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVALLALVIIFRRRIRSYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NC_021829.3|WP_003734632.1|269777_270533_-|DUF4866-domain-containing-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NC_021829.3|WP_003721252.1|287272_287746_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NC_021829.3|WP_010958986.1|287765_288251_+|hypothetical-protein
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NC_021829.3|WP_003740435.1|288278_288584_+|cell-wall-surface-anchor-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NC_021829.3|WP_020830750.1|288659_288926_+|transposase
MARIEYGEEIQKSLLVLYSRGSTIQSICREYGIPRYEFHKWMKLHDADKLETKEVKTFLQVRELKQQKNKLEEEILFLNEAINLLESP
>NC_021829.3|WP_003734772.1|289661_290279_+|hypothetical-protein
MLMSLSVLPLATYASETENTPTESYDGENFIATQTGNTLVIEDKKTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIATQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMGAKTLYVRVKQYRTSGYQFYKYDSYYYANASLTKLVKKTSQTKRMW
>NC_021829.3|WP_003734773.1|290588_290936_+|hypothetical-protein
MQKDTYSGIRLSVIQLIDSKKENLKENNIKLTIIKDEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
>NC_021829.3|WP_003734774.1|291339_291582_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATGIVNVKKKEYLWSTMLFEGVLVVLLSLIIVLV
>NC_021829.3|WP_003734775.1|291664_292642_-|HD-domain-containing-protein
MKITDPLYGTFEIEPVLAELIQSPLVSRLAYVHQGGSSYLVNPLWDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQIFEDFVKTSTIPAILEKYGYSFEGIFDDISKWKILEQEAPELCADRIDYTLQDLYRHRKISLAEVEEFLQALVMVDGRLYLANIALAEWFVAQYYSEVIDYFYDPLNVYSYEILAEAMRIAFQQETITTADLRLTDTELLAKLNANSDAREKIQLLASAHLEENEADFTYHHKKKMRLINPSILVDGRLIPADELSEKVRKMNDWASERSKHGIYIKATKKSKQ
>NC_021829.3|WP_003727316.1|293099_293282_+|hypothetical-protein
MYKNTVYTRGIMVLYEIGYLLEGLNGLFYFSMYKIMYIDTICVILNINLSKSILNVLIFA
>NC_021829.3|WP_012681110.1|293403_294231_+|hypothetical-protein
MKKRLIGIITALLLVSGILLSPQMAQAETKVDYDALYQQGVSEGIINKADVSLETWIKENESEYNQVYQDGLKDGVYDASLSYEEWIKLNNYGQPPVVDENWEEVPQKPMLKGVYKGYNIKKGDILITNGTSSSGLLGHAAIANGNEYILDIPGAGKTTRQVPTSKWMSDYDPEGWVKVYRLKDSSVANAAANWADKNYYSTKGTSKQNIFPKYGMTGSRYSKNPTYCSKIVLQAYYFGTGNKPVVQVFPSLVTVYDLPNYFSKAYKPQQVKYFK

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Crispr_ID: NC_021829_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021829_3

3003732-3003886

Unclear

Consensus_repeat	Method
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_021829_3

>merge|NC_021829|3|3003732-3003886|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

>NC_021829|3|2|3003732-3003886|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	ACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAA
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021829.3\|WP_003734710.1\|2994677_2996051_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NC_021829.3\|WP_003725738.1\|3010595_3011156_+\|peptidyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_021829.3\|WP_003725734.1\|3006291_3006753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227145
NC_021829.3\|WP_003726703.1\|2998087_2999041_-\|1-phosphatidylinositol-phosphodiesterase	unknown	unknown	gnl\|CDD\|176497
NC_021829.3\|WP_003722728.1\|2996101_2997058_+\|ribose-phosphate-pyrophosphokinase-1	unknown	unknown	gnl\|CDD\|234929
NC_021829.3\|WP_003725737.1\|3009904_3010489_+\|dTDP-4-amino-4,6-dideoxy-D-galactose-acyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_021829.3\|WP_003722726.1\|2993982_2994291_+\|septation-protein-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021829.3\|WP_003725730.1\|3001207_3002740_+\|zinc-metalloproteinase-PrtA	unknown	unknown	gnl\|CDD\|225768
NC_021829.3\|WP_003722729.1\|2997101_2997815_-\|listeriolysin-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NC_021829.3\|WP_003722723.1\|2990974_2991667_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|213222
NC_021829.3\|WP_003722725.1\|2993555_2993864_+\|septation-protein-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021829.3\|WP_003725507.1\|2991663_2992872_+\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC	unknown	unknown	gnl\|CDD\|182528
NC_021829.3\|WP_003734713.1\|3005835_3006159_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340321
NC_021829.3\|WP_003734712.1\|3004894_3005764_+\|phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NC_021829.3\|WP_003722740.1\|3009191_3009815_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
NC_021829.3\|WP_003725735.1\|3006805_3007138_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NC_021829.3\|WP_003725736.1\|3007204_3007936_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NC_021829.3\|WP_003722739.1\|3007956_3008898_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NC_021829.3\|WP_003728174.1\|2999283_3000873_+\|thiol-activated-toxin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NC_021829.3\|WP_003728167.1\|3011269_3014809_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118

Protein	Function_ID	Function_description	E-value
NC_021829.3\|WP_003734710.1\|2994677_2996051_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_021829.3\|WP_003725738.1\|3010595_3011156_+\|peptidyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.72721e-108
NC_021829.3\|WP_003725734.1\|3006291_3006753_+\|hypothetical-protein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.52192e-59
NC_021829.3\|WP_003726703.1\|2998087_2999041_-\|1-phosphatidylinositol-phosphodiesterase	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	1.53279e-112
NC_021829.3\|WP_003722728.1\|2996101_2997058_+\|ribose-phosphate-pyrophosphokinase-1	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_021829.3\|WP_003725737.1\|3009904_3010489_+\|dTDP-4-amino-4,6-dideoxy-D-galactose-acyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9401e-09
NC_021829.3\|WP_003722726.1\|2993982_2994291_+\|septation-protein-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NC_021829.3\|WP_003725730.1\|3001207_3002740_+\|zinc-metalloproteinase-PrtA	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	3.62455e-140
NC_021829.3\|WP_003722729.1\|2997101_2997815_-\|listeriolysin-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NC_021829.3\|WP_003722723.1\|2990974_2991667_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NC_021829.3\|WP_003722725.1\|2993555_2993864_+\|septation-protein-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NC_021829.3\|WP_003725507.1\|2991663_2992872_+\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.06393e-62
NC_021829.3\|WP_003734713.1\|3005835_3006159_+\|hypothetical-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	1.23896e-43
NC_021829.3\|WP_003734712.1\|3004894_3005764_+\|phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	6.38793e-86
NC_021829.3\|WP_003722740.1\|3009191_3009815_+\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NC_021829.3\|WP_003725735.1\|3006805_3007138_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NC_021829.3\|WP_003725736.1\|3007204_3007936_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	1.88663e-21
NC_021829.3\|WP_003722739.1\|3007956_3008898_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NC_021829.3\|WP_003728174.1\|2999283_3000873_+\|thiol-activated-toxin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	7.22171e-179
NC_021829.3\|WP_003728167.1\|3011269_3014809_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

>NC_021829.3|WP_003725730.1|3001207_3002740_+|zinc-metalloproteinase-PrtA
MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKIAFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NC_021829.3|WP_003728174.1|2999283_3000873_+|thiol-activated-toxin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENLISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNSVDNPIE
>NC_021829.3|WP_003726703.1|2998087_2999041_-|1-phosphatidylinositol-phosphodiesterase
MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFGASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NC_021829.3|WP_003722729.1|2997101_2997815_-|listeriolysin-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NC_021829.3|WP_003722728.1|2996101_2997058_+|ribose-phosphate-pyrophosphokinase-1
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NC_021829.3|WP_003734710.1|2994677_2996051_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIEPGVMLRGETVIGDDCVVTTGSEIVNSVIGERVYVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYAKHLNHGK
>NC_021829.3|WP_003722726.1|2993982_2994291_+|septation-protein-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NC_021829.3|WP_003722725.1|2993555_2993864_+|septation-protein-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NC_021829.3|WP_003725507.1|2991663_2992872_+|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NC_021829.3|WP_003722723.1|2990974_2991667_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NC_021829.3|WP_003734712.1|3004894_3005764_+|phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRFCSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NC_021829.3|WP_003734713.1|3005835_3006159_+|hypothetical-protein
MYIKGGLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKEIECLGSCKIKNTNQKIHFFSIKKNLFEEEGNMAGILNEHERKGADKSIFIVILDDEKGIANEE
>NC_021829.3|WP_003725734.1|3006291_3006753_+|hypothetical-protein
MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NC_021829.3|WP_003725735.1|3006805_3007138_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NC_021829.3|WP_003725736.1|3007204_3007936_-|DNA-alkylation-repair-protein
MRLRMLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQIEKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NC_021829.3|WP_003722739.1|3007956_3008898_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NC_021829.3|WP_003722740.1|3009191_3009815_+|50S-ribosomal-protein-L25
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NC_021829.3|WP_003725737.1|3009904_3010489_+|dTDP-4-amino-4,6-dideoxy-D-galactose-acyltransferase
MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEKYVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA
>NC_021829.3|WP_003725738.1|3010595_3011156_+|peptidyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NC_021829.3|WP_003728167.1|3011269_3014809_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1011827 : 1076605

Listeria_phage(90.74%)

capsid,terminase,holin,protease,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020830754.1\|1011827_1012982_-	tyrosine recombinase XerS	Q8W5Y3	Listeria_phage	3.0e-216	98.4
WP_003734673.1\|1013115_1013547_-	hypothetical protein	Q8W5Y2	Listeria_phage	2.9e-71	100.0
WP_020830755.1\|1013597_1014050_-	autonomous glycyl radical cofactor GrcA	R4IBK9	Listeria_phage	1.8e-79	94.7
WP_020830756.1\|1014066_1014390_-	XRE family transcriptional regulator	Q8W5Y0	Listeria_phage	5.9e-37	72.0
WP_003730994.1\|1014790_1014994_-	hypothetical protein	NA	NA	NA	NA
WP_003734670.1\|1015060_1015267_+	XRE family transcriptional regulator	Q8W5X9	Listeria_phage	6.4e-29	100.0
WP_003734669.1\|1015269_1015512_+	hypothetical protein	Q8W5X8	Listeria_phage	8.3e-44	100.0
WP_003734668.1\|1015514_1015700_+	hypothetical protein	Q8W5X7	Listeria_phage	3.7e-28	100.0
WP_020830759.1\|1016394_1016649_+	transcriptional activator NhaR	Q8W5X5	Listeria_phage	7.4e-35	91.5
WP_003743364.1\|1016666_1017644_+	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	8.3e-50	40.2
WP_020830760.1\|1017640_1017835_+	50S ribosomal protein L18a	NA	NA	NA	NA
WP_020830761.1\|1017861_1018494_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	2.2e-64	61.0
WP_020830762.1\|1018490_1019012_+	hypothetical protein	A0A059T7V5	Listeria_phage	6.9e-35	50.6
WP_003743371.1\|1019011_1019713_+	hypothetical protein	NA	NA	NA	NA
WP_003735015.1\|1019725_1019995_+	hypothetical protein	A0A059T7S7	Listeria_phage	5.8e-38	89.5
WP_003735014.1\|1019991_1020177_+	hypothetical protein	A0A059T5G1	Listeria_phage	1.2e-26	98.4
WP_003735013.1\|1020173_1020464_+	hypothetical protein	Q8W5X0	Listeria_phage	5.0e-43	90.6
WP_020830763.1\|1020463_1020649_+	hypothetical protein	NA	NA	NA	NA
WP_003734866.1\|1020649_1020880_+	hypothetical protein	NA	NA	NA	NA
WP_003734867.1\|1020872_1021082_+	hypothetical protein	NA	NA	NA	NA
WP_003734868.1\|1021078_1021600_+	hypothetical protein	NA	NA	NA	NA
WP_003734869.1\|1021596_1021776_+	hypothetical protein	NA	NA	NA	NA
WP_003734870.1\|1021772_1022033_+	hypothetical protein	Q8W5W6	Listeria_phage	8.7e-15	48.2
WP_003734872.1\|1022206_1022590_+	hypothetical protein	A8ATE8	Listeria_phage	2.8e-54	82.7
WP_031671398.1\|1022591_1023071_+	siphovirus Gp157 protein	A0A059T803	Listeria_phage	1.1e-76	95.6
WP_003734874.1\|1023083_1023773_+	DNA-binding protein	A0A059T7T3	Listeria_phage	4.8e-129	98.3
WP_020830764.1\|1023836_1025093_+	excinuclease ABC subunit UvrB	Q8W5V9	Listeria_phage	2.0e-229	93.5
WP_020830765.1\|1025117_1025603_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	7.2e-87	98.8
WP_020830766.1\|1025625_1027899_+	arogenate dehydrogenase	A0A059T6A4	Listeria_phage	0.0e+00	97.0
WP_012951539.1\|1028234_1028552_+	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	7.3e-48	89.3
WP_020830767.1\|1028553_1028766_+	hypothetical protein	NA	NA	NA	NA
WP_020830768.1\|1029213_1029741_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	3.2e-80	83.1
WP_020830769.1\|1029741_1030167_+	DUF722 domain-containing protein	Q8W5V4	Listeria_phage	4.0e-73	99.3
WP_003734881.1\|1030746_1031058_+	HNH endonuclease	Q8W5V3	Listeria_phage	5.5e-56	100.0
WP_003734882.1\|1031063_1031336_+	hypothetical protein	Q8W5V2	Listeria_phage	2.1e-43	100.0
WP_003734883.1\|1031440_1031800_+	hypothetical protein	Q8W608	Listeria_phage	7.7e-62	100.0
WP_015970821.1\|1031783_1033436_+\|terminase	terminase large subunit	Q8W607	Listeria_phage	0.0e+00	100.0
WP_003743952.1\|1033449_1034637_+\|portal	phage portal protein	Q8W606	Listeria_phage	7.6e-223	100.0
WP_003734886.1\|1034614_1035361_+\|protease	Clp protease ClpP	Q8W605	Listeria_phage	2.7e-133	100.0
WP_003734887.1\|1035357_1036530_+\|capsid	phage major capsid protein	Q8W604	Listeria_phage	3.0e-187	100.0
WP_077411753.1\|1036552_1036672_+	hypothetical protein	Q858X0	Listeria_phage	1.7e-13	100.0
WP_003734888.1\|1036658_1036952_+	hypothetical protein	Q8W603	Listeria_phage	8.8e-48	100.0
WP_003734889.1\|1036938_1037277_+	hypothetical protein	Q8W602	Listeria_phage	4.4e-59	100.0
WP_003734890.1\|1037269_1037680_+	hypothetical protein	Q8W601	Listeria_phage	2.3e-70	100.0
WP_003734891.1\|1037669_1038092_+	hypothetical protein	Q8W600	Listeria_phage	2.3e-73	100.0
WP_003734892.1\|1038093_1038672_+	hypothetical protein	Q8W5Z9	Listeria_phage	1.0e-103	100.0
WP_003734893.1\|1038792_1039155_+	hypothetical protein	Q8W5Z8	Listeria_phage	9.5e-60	100.0
WP_020830772.1\|1039337_1042418_+	mechanosensitive channel MscK	Q8W5Z7	Listeria_phage	0.0e+00	100.0
WP_003734895.1\|1042414_1043122_+	hypothetical protein	Q8W5Z6	Listeria_phage	2.5e-136	100.0
WP_003743964.1\|1043121_1045248_+	hypothetical protein	Q8W5Z5	Listeria_phage	0.0e+00	100.0
WP_020830773.1\|1045244_1046366_+	endonuclease MutS2	Q8W5Z4	Listeria_phage	2.0e-180	98.4
WP_020830774.1\|1046362_1046704_+	hypothetical protein	A0A059T7P5	Listeria_phage	2.3e-55	95.6
WP_012581446.1\|1046704_1046851_+	XkdX family protein	A0A059T6D9	Listeria_phage	1.1e-19	100.0
WP_003725053.1\|1046887_1047253_+	preprotein translocase subunit SecG	A8ASL3	Listeria_phage	1.3e-11	100.0
WP_020830775.1\|1047265_1047547_+\|holin	holin	A8ASL4	Listeria_phage	1.5e-41	95.7
WP_020830776.1\|1047546_1048410_+	D-alanyl-D-alanine dipeptidase	Q0PRU8	Listeria_phage	3.1e-165	97.2
WP_020830777.1\|1048791_1049334_+	hypothetical protein	NA	NA	NA	NA
WP_020830778.1\|1049346_1049742_+	hypothetical protein	NA	NA	NA	NA
WP_020830779.1\|1049998_1050232_+	hypothetical protein	A8ATX0	Listeria_phage	4.3e-37	97.4
WP_020830780.1\|1050228_1050420_+	hypothetical protein	Q8W5Y4	Listeria_phage	4.6e-29	98.4
WP_003726035.1\|1050614_1050716_-	hypothetical protein	A0A059T688	Listeria_phage	2.4e-05	66.7
WP_003726037.1\|1051112_1051586_+	hypothetical protein	NA	NA	NA	NA
WP_003726038.1\|1051691_1052054_+	hypothetical protein	NA	NA	NA	NA
WP_034172926.1\|1054788_1056852_+	internalin	NA	NA	NA	NA
WP_003727539.1\|1056974_1058333_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_003734528.1\|1058375_1058969_-	hypothetical protein	NA	NA	NA	NA
WP_003726044.1\|1059105_1059513_-	alpha-amylase	NA	NA	NA	NA
WP_003734527.1\|1059677_1060277_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.3e-29	41.0
WP_003726046.1\|1060308_1060569_-	Sec-independent protein translocase TatB	NA	NA	NA	NA
WP_003726047.1\|1060692_1062105_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.9e-51	32.0
WP_003726048.1\|1062129_1062393_+	DUF3116 domain-containing protein	NA	NA	NA	NA
WP_003726049.1\|1062560_1063037_+	Nudix family hydrolase	NA	NA	NA	NA
WP_003726050.1\|1063074_1063320_-	hypothetical protein	NA	NA	NA	NA
WP_003726051.1\|1063316_1064522_-	multidrug transporter MdtG	NA	NA	NA	NA
WP_003727534.1\|1064518_1064728_-	hypothetical protein	NA	NA	NA	NA
WP_003726052.1\|1064726_1065386_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003726053.1\|1065425_1065620_-	hypothetical protein	NA	NA	NA	NA
WP_003726054.1\|1065686_1066535_-	YitT family protein	NA	NA	NA	NA
WP_003726055.1\|1067153_1067867_+	trehalose operon repressor	NA	NA	NA	NA
WP_003726056.1\|1067897_1069544_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_003727531.1\|1069562_1071047_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_003726723.1\|1071164_1071626_+	Nudix family hydrolase	NA	NA	NA	NA
WP_003726717.1\|1071664_1072129_-	hypothetical protein	NA	NA	NA	NA
WP_003734526.1\|1072317_1073232_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003734525.1\|1073257_1074505_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.7e-106	52.0
WP_003734524.1\|1074488_1075319_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-46	42.4
WP_003734523.1\|1075465_1076605_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1625266 : 1633552

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1625266_1625833_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1625829_1626879_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|1626897_1628325_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003731570.1\|1628309_1630529_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003734638.1\|1630521_1631205_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1631208_1631454_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003734637.1\|1631465_1632179_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	6.7e-41	38.3
WP_003726215.1\|1632259_1633552_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_3

2357206 : 2365051

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2357206_2358178_-	sporulation regulator WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003734495.1\|2358185_2359154_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|2359155_2360031_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003734494.1\|2360138_2361869_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	5.6e-174	53.3
WP_003741152.1\|2361910_2362972_-	galactose-1-epimerase	NA	NA	NA	NA
WP_003725411.1\|2362988_2363972_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.0e-52	38.1
WP_003722610.1\|2364091_2365051_-	thioredoxin reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_4

2837512 : 2880983

Listeria_phage(95.52%)

terminase,integrase,tail,holin,portal

attL 2838587:2838631|attR 2881083:2881127

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003734164.1\|2837512_2838469_+	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.6e-29	29.6
2838587:2838631	attL	NA	NA	NA	NA
WP_003734959.1\|2838735_2839938_-\|integrase	site-specific integrase	A0A0B5CTW8	Listeria_phage	8.5e-222	99.0
WP_003734960.1\|2840003_2840744_-	hypothetical protein	A0A059T7X3	Listeria_phage	4.5e-133	100.0
WP_003727738.1\|2840765_2841488_-	membrane protein insertase YidC	A0A059T7P9	Listeria_phage	1.3e-105	100.0
WP_003727739.1\|2841503_2841722_-	transcription termination/antitermination protein NusA	A0A059T6E3	Listeria_phage	5.4e-34	100.0
WP_003727740.1\|2841744_2842236_-	hypothetical protein	A0A059T5E8	Listeria_phage	3.4e-92	100.0
WP_003727741.1\|2842268_2842574_-	XRE family transcriptional regulator	A0A059T669	Listeria_phage	6.4e-49	100.0
WP_003727742.1\|2842699_2842942_+	RNA polymerase sporulation sigma factor SigG	A0A059T7X5	Listeria_phage	1.7e-36	100.0
WP_003727743.1\|2842945_2843212_+	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
WP_003735008.1\|2843140_2843371_-	hypothetical protein	Q9T185	Listeria_phage	2.3e-35	98.7
WP_003735007.1\|2843435_2843630_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.3e-26	100.0
WP_003735006.1\|2843641_2843926_+	hypothetical protein	A0A0B5D168	Listeria_phage	1.1e-47	100.0
WP_003727747.1\|2843951_2844233_+	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
WP_003727749.1\|2844418_2844661_-	hypothetical protein	A0A059T7Q3	Listeria_phage	1.8e-38	100.0
WP_010991177.1\|2844724_2845495_+	phage repressor protein/antirepressor Ant	A8ATY0	Listeria_phage	7.4e-102	71.7
WP_020830800.1\|2845617_2846142_+	hypothetical protein	A0A0B5D173	Listeria_phage	1.8e-83	93.1
WP_003731816.1\|2846148_2846334_+	helix-turn-helix domain-containing protein	A0A059T674	Listeria_phage	1.1e-27	100.0
WP_003734954.1\|2846349_2846538_+	hypothetical protein	A0A0B5CU43	Listeria_phage	4.5e-29	100.0
WP_003734953.1\|2846840_2847035_+	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_003734952.1\|2847031_2847508_+	hypothetical protein	A8ASN2	Listeria_phage	1.3e-56	94.3
WP_020830802.1\|2847513_2848173_+	single-stranded DNA-binding protein	A8ASN3	Listeria_phage	6.3e-94	99.5
WP_020830803.1\|2848189_2849158_+	DnaD domain protein	A8ASN4	Listeria_phage	3.8e-164	92.6
WP_020830804.1\|2849154_2850525_+	DNA (cytosine-5-)-methyltransferase	A0A1X9I6Y5	Streptococcus_phage	2.5e-113	50.4
WP_020830805.1\|2850527_2850992_+	adenine-specific DNA-methyltransferase	A8ATY8	Listeria_phage	2.9e-85	94.2
WP_020830807.1\|2851389_2851938_+	DUF1642 domain-containing protein	A0A059T7S4	Listeria_phage	9.0e-70	73.6
WP_003743369.1\|2852116_2852620_+	hypothetical protein	A0A0B5CYR4	Listeria_phage	9.3e-29	44.8
WP_020830810.1\|2852790_2852997_+	hypothetical protein	A0A059T6C7	Listeria_phage	4.8e-32	100.0
WP_020830811.1\|2852993_2853284_+	hypothetical protein	A0A059T5D9	Listeria_phage	4.6e-49	100.0
WP_010991287.1\|2853283_2853469_+	hypothetical protein	A0A059T654	Listeria_phage	6.2e-31	100.0
WP_020830812.1\|2853469_2853664_+	hypothetical protein	A0A059T7V7	Listeria_phage	4.9e-31	100.0
WP_020830813.1\|2853678_2853906_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	2.3e-35	98.7
WP_020830814.1\|2853917_2854205_+	phosphoporin PhoE	R4IBL5	Listeria_phage	7.4e-23	60.5
WP_020830815.1\|2854201_2854480_+	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	9.6e-20	53.3
WP_020830816.1\|2854476_2854878_+	hypothetical protein	A8ATZ6	Listeria_phage	1.7e-54	82.0
WP_020830817.1\|2854877_2855360_+	primosomal replication protein N	A8ATZ7	Listeria_phage	1.6e-78	95.0
WP_003734964.1\|2855378_2855561_+	hypothetical protein	A8ASP6	Listeria_phage	1.9e-16	79.4
WP_003734965.1\|2855505_2855910_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.5e-61	89.6
WP_003734966.1\|2855913_2856297_+	hypothetical protein	A0A0B5CU14	Listeria_phage	4.5e-60	91.3
WP_003734968.1\|2856436_2856871_+	hypothetical protein	A8AU03	Listeria_phage	5.3e-73	95.1
WP_003727778.1\|2857130_2857670_+	hypothetical protein	NA	NA	NA	NA
WP_003743392.1\|2857715_2858258_+\|terminase	terminase small subunit	A8ASJ1	Listeria_phage	1.2e-90	98.3
WP_020830818.1\|2858226_2859558_+\|terminase	PBSX family phage terminase large subunit	A0A059T5E2	Listeria_phage	1.3e-263	99.5
WP_003743397.1\|2859570_2861070_+\|portal	phage portal protein	A0A059T657	Listeria_phage	1.0e-277	100.0
WP_003734943.1\|2861075_2862215_+	hypothetical protein	A0A059T7W2	Listeria_phage	1.7e-208	100.0
WP_003734944.1\|2862293_2862884_+	scaffold protein	A0A059T7N8	Listeria_phage	2.5e-86	100.0
WP_003734945.1\|2862883_2863885_+	hypothetical protein	A0A059T6D4	Listeria_phage	7.4e-187	100.0
WP_003734946.1\|2863903_2864299_+	hypothetical protein	A0A059T5E3	Listeria_phage	5.1e-67	100.0
WP_003743399.1\|2864298_2864661_+	hypothetical protein	A0A059T658	Listeria_phage	8.3e-64	100.0
WP_003743401.1\|2864660_2864999_+	hypothetical protein	A0A059T7W4	Listeria_phage	2.9e-58	100.0
WP_003743402.1\|2864998_2865406_+	hypothetical protein	A0A059T7P0	Listeria_phage	2.4e-67	100.0
WP_003735047.1\|2865408_2865846_+	hypothetical protein	A0A059T6D6	Listeria_phage	2.5e-78	100.0
WP_074384949.1\|2865775_2866108_+	Ig-like virion protein	A0A059T5E4	Listeria_phage	1.7e-42	100.0
WP_003743404.1\|2866160_2866583_+	hypothetical protein	A8ASK4	Listeria_phage	3.1e-70	100.0
WP_020830819.1\|2866587_2867187_+	hypothetical protein	A0A0B5CTW0	Listeria_phage	4.0e-71	67.5
WP_020830820.1\|2867202_2872569_+\|tail	tail tape measure protein	A8ASK6	Listeria_phage	0.0e+00	93.5
WP_003743410.1\|2872565_2873393_+\|tail	phage tail family protein	A8ASK7	Listeria_phage	2.4e-159	100.0
WP_020830821.1\|2873407_2874430_+	hypothetical protein	A8ASK8	Listeria_phage	8.3e-194	99.1
WP_010990226.1\|2874430_2875456_+	hypothetical protein	A8ASK9	Listeria_phage	2.3e-175	100.0
WP_020830822.1\|2875452_2876520_+	DUF2479 domain-containing protein	A8ASL0	Listeria_phage	2.0e-161	99.7
WP_003725055.1\|2876516_2876858_+	hypothetical protein	A8ASL1	Listeria_phage	4.2e-57	100.0
WP_003725054.1\|2876858_2877005_+	XkdX family protein	A8ASL2	Listeria_phage	1.1e-19	100.0
WP_003725053.1\|2877041_2877407_+	preprotein translocase subunit SecG	A8ASL3	Listeria_phage	1.3e-11	100.0
WP_003725052.1\|2877419_2877701_+\|holin	holin	A8ASL4	Listeria_phage	8.2e-43	100.0
WP_020830823.1\|2877700_2878570_+	D-alanyl-D-alanine dipeptidase	A8ASL5	Listeria_phage	5.3e-165	96.2
WP_003743422.1\|2878943_2879864_+	hypothetical protein	A0A0H4U080	Erysipelothrix_phage	3.7e-15	27.9
WP_003743424.1\|2879901_2880111_-	hypothetical protein	R4IBK5	Listeria_phage	6.1e-27	97.1
WP_020830825.1\|2880546_2880780_+	hypothetical protein	A0A059T6E1	Listeria_phage	1.2e-36	96.1
WP_003734973.1\|2880776_2880983_+	hypothetical protein	A0A059T5E7	Listeria_phage	1.8e-31	100.0
2881083:2881127	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2920491 : 2927018

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|2920491_2920944_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|2920949_2921285_-	cytoskeleton protein RodZ	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|2921501_2921930_+	hypothetical protein	NA	NA	NA	NA
WP_003728213.1\|2921941_2922358_+	hypothetical protein	A8ASQ1	Listeria_phage	3.2e-19	37.9
WP_003728212.1\|2922637_2923027_+	type IV pilin biogenesis protein	NA	NA	NA	NA
WP_003721744.1\|2923039_2923552_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|2923599_2923902_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|2923943_2924348_+	hypothetical protein	NA	NA	NA	NA
WP_003731178.1\|2924334_2926203_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003734720.1\|2926199_2927018_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021829

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection