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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_002929 Bordetella pertussis Tohama I, complete genome 5 crisprs cas3,DinG,csa3,DEDDh 0 0 25 0

Results visualization

1. NC_002929
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002929_1 250749-250833 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002929_2 410664-410757 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002929_3 1014639-1014733 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002929_4 1883991-1884118 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002929_5 3428955-3429064 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164894 : 279804 96 Klosneuvirus(12.5%) protease,transposase,tRNA NA
DBSCAN-SWA_4 391016 : 447471 49 Heterosigma_akashiwo_virus(14.29%) transposase NA
DBSCAN-SWA_5 483145 : 525100 38 Bacillus_virus(11.11%) integrase,transposase attL 490556:490574|attR 535931:535949
DBSCAN-SWA_6 691481 : 747575 48 Pseudomonas_phage(10.0%) transposase,tRNA NA
DBSCAN-SWA_7 809086 : 863217 41 Ostreococcus_lucimarinus_virus(25.0%) transposase,holin NA
DBSCAN-SWA_8 1016796 : 1087072 59 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_9 1090824 : 1152885 52 Catovirus(20.0%) holin,protease,transposase,tRNA NA
DBSCAN-SWA_10 1174803 : 1243219 55 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_11 1342355 : 1410842 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_12 1614634 : 1682720 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_13 1718675 : 1774266 47 Tetraselmis_virus(25.0%) transposase NA
DBSCAN-SWA_14 1781562 : 1844528 55 Klosneuvirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_15 2209231 : 2261422 45 Erysipelothrix_phage(33.33%) transposase NA
DBSCAN-SWA_16 2287981 : 2338735 46 Staphylococcus_phage(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_17 2719918 : 2760587 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_18 2815003 : 2887873 58 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_19 2891016 : 2956778 48 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_20 2987164 : 3029806 38 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_21 3196549 : 3269536 59 Xanthomonas_phage(14.29%) holin,transposase,tRNA NA
DBSCAN-SWA_22 3287959 : 3328570 33 Erwinia_phage(25.0%) protease,integrase,transposase,tRNA attL 3311417:3311435|attR 3331305:3331323
DBSCAN-SWA_23 3377508 : 3497784 101 Acinetobacter_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_24 3512722 : 3571458 49 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_25 3577624 : 3623678 49 uncultured_Caudovirales_phage(21.05%) transposase,terminase,tRNA,tail,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage