CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	1 crisprs	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	1	27	0	0
NC_002937	Desulfovibrio vulgaris str. Hildenborough, complete sequence	1 crisprs	DEDDh,csa3,cas2,cas3	0	0	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_005863_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005863_1

175898-177711

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	PILER-CR
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CRT

27 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_005863_1

>merge|NC_005863|1|175898-177711|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAACCAGTCTCGTTACCCTGTCGCGGAGGGCGTCGATGTCGCCCCCCACGCGGGGGCGTGGATTGAAACGCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAAGTCGCCCCCCACGCGGGGGCGTGGATTGAAACCTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGCGTCGCCCCCCACGCGGGGGCGTGGATTGAAACTTGAGCGCGGCGAGTGCGTGGACATCGTGGCGAGTCGCCCCCCACGCGGGGGCGTGGATTGAAACATCACACACCTCGCTTGCTCTACGTTCCTGCATCGTCGCCCCCCACGCGGGGGCGTGGATTGAAACCAGTTGGAGGAAGACCATCAACAGTTCCATAGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACTGCGATGCACTGCACCGCCATGCCAGCCTGCGCCGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACCGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACTCAACGCCCACGCCCTCCGCGATGCACAAGTGGCGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACGCCCCGACCGACATGGTGCAGCGTGCCATCACGGGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACGGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACCGAAGAATTACGCGCAGTACGAAATTGACGAGCGTCGCCCCCCACGCGGGGGCGTGGATTGAAACATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCACGTCGCCCCCCACGCGGGGGCGTGGATTGAAACAAGTCGCAGGCTTGCGAAGCCTACACGCGCAAGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGTGTCGCCCCCCACGCGGGGGCGTGGATTGAAACAGCCTCAACGCGCACGGGGCAGTGTACTCCGCGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACTCCCTGGCGGCGCAGAGCGTACTGTTCAGGGATGTCGCCCCCCACGCGGGGGCGTGGATTGAAACGATCTCATAGGCGTTATGGAGCGTGGCTCGTGAGTCGCCCCCCACGCGGGGGCGTGGATTGAAACATCCAGATACCGCAGGATGATGACAACTACCTGTGTCGCCCCCCACGCGGGGGCGTGGATTGAAACAACATCGGAACGGATGTTGACCGTGTTGGTGGAGTCGCCCCCCGCGCGGGGGCGTGGATTGAAACGACCTGCCGGTGGTGACAACGGCAATCCTGTTGCGTCGCCCCCCACGCGGGGGCGTGGATTGAAACTACTATCCCCAAGCCGCCCGTCTCGAATCGGCAGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACCTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAAGTCGCCCCCCACGCGGGGGCGTGGATTGAAACACCTGATCGATACGGTTATGCCCGTAACGCTGCGCGTCGCCCCCCGCGCGGGGGCGTGGATTGAAACGCGGGCGGGGGCGGTGCATCGCTCGGCATCGAGGTCGCCCCCCACGCGGGGGCGTGGATTGAAACAGCGAAAGTGCCCACGCATCAGTCACCTTGGCTATGTCGCCCCTCGCGCGGGGGCGTGGATTGAAAC

>NC_005863|1|1|175898-177711|PILER-CR
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCACACACCTCGCTTGCTCTACGTTCCTGCATC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTTGGAGGAAGACCATCAACAGTTCCATAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGAAGAATTACGCGCAGTACGAAATTGACGAGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCCAGATACCGCAGGATGATGACAACTACCTGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AACATCGGAACGGATGTTGACCGTGTTGGTGGA
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT
GTCGCCCCTCGCGCGGGGGCGTGGATTGAAAC

>NC_005863|1|1|175898-177711|CRISPRCasFinder
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCACACACCTCGCTTGCTCTACGTTCCTGCATC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTTGGAGGAAGACCATCAACAGTTCCATAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGAAGAATTACGCGCAGTACGAAATTGACGAGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCCAGATACCGCAGGATGATGACAACTACCTGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AACATCGGAACGGATGTTGACCGTGTTGGTGGA
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT
GTCGCCCCTCGCGCGGGGGCGTGGATTGAAAC

>NC_005863|1|1|175898-177711|CRT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCACACACCTCGCTTGCTCTACGTTCCTGCATC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CAGTTGGAGGAAGACCATCAACAGTTCCATAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CGAAGAATTACGCGCAGTACGAAATTGACGAGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ATCCAGATACCGCAGGATGATGACAACTACCTGT
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AACATCGGAACGGATGTTGACCGTGTTGGTGGA
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC
GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC	GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG
GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC	AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT
GTCGCCCCTCGCGCGGGGGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_005863.1\|WP_014524691.1\|175428_175719_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_005863.1\|WP_011176709.1\|172896_173769_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|274216
NC_005863.1\|WP_011176720.1\|184785_186333_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273817
NC_005863.1\|WP_011176715.1\|179416_181501_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_005863.1\|WP_150103631.1\|187088_187322_+\|hypothetical-protein	unknown	unknown	unknown
NC_005863.1\|WP_011176711.1\|174392_175424_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_005863.1\|WP_014524693.1\|181664_183830_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NC_005863.1\|WP_011176708.1\|171055_172894_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_005863.1\|WP_011176704.1\|164795_165263_+\|CesT-family-type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|336247
NC_005863.1\|WP_011176714.1\|178782_179430_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_005863.1\|WP_014524694.1\|187548_191274_+\|DUF3626-domain-containing-protein	unknown	unknown	gnl\|CDD\|372019
NC_005863.1\|WP_011176707.1\|170375_171059_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_005863.1\|WP_011176723.1\|191284_191755_+\|CesT-family-type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|336247
NC_005863.1\|WP_014524689.1\|165322_167803_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_005863.1\|WP_011176710.1\|173770_174409_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_005863.1\|WP_011176724.1\|192333_193575_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380548
NC_005863.1\|WP_011176703.1\|163069_164422_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381617
NC_005863.1\|WP_011176713.1\|177827_178661_-\|zinc-transporter-ZupT	unknown	unknown	gnl\|CDD\|235253
NC_005863.1\|WP_014524690.1\|168124_170362_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_005863.1\|WP_011176725.1\|193582_196600_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042

Protein	Function_ID	Function_description	E-value
NC_005863.1\|WP_014524691.1\|175428_175719_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.71857e-35
NC_005863.1\|WP_011176709.1\|172896_173769_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|274216	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.	4.23998e-176
NC_005863.1\|WP_011176720.1\|184785_186333_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|273817	TIGR01817, Nif-specific_regulatory_protein, Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions].	6.2672e-170
NC_005863.1\|WP_011176715.1\|179416_181501_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.10971e-36
NC_005863.1\|WP_011176711.1\|174392_175424_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_005863.1\|WP_014524693.1\|181664_183830_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.08378e-07
NC_005863.1\|WP_011176708.1\|171055_172894_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_005863.1\|WP_011176704.1\|164795_165263_+\|CesT-family-type-III-secretion-system-chaperone	gnl\|CDD\|336247	pfam05932, CesT, Tir chaperone protein (CesT) family. This family consists of a number of bacterial sequences which are highly similar to the Tir chaperone protein in E. Coli. In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialized type III secretion system, which is utilized to deliver virulence effector proteins directly into the host cell cytosol. Many of the proteins secreted from such systems require small cytosolic chaperones to maintain the secreted substrates in a secretion-competent state. CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. This family also contains several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. DspF and AvrF are small (16 kDa and 14 kDa) and acidic with predicted amphipathic alpha helices in their C termini; they resemble chaperones for virulence factors secreted by type III secretion systems of animal pathogens.	3.50475e-27
NC_005863.1\|WP_011176714.1\|178782_179430_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.46567e-40
NC_005863.1\|WP_014524694.1\|187548_191274_+\|DUF3626-domain-containing-protein	gnl\|CDD\|372019	pfam12294, DUF3626, Protein of unknown function (DUF3626). This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.	2.39378e-06
NC_005863.1\|WP_011176707.1\|170375_171059_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.2016e-114
NC_005863.1\|WP_011176723.1\|191284_191755_+\|CesT-family-type-III-secretion-system-chaperone	gnl\|CDD\|336247	pfam05932, CesT, Tir chaperone protein (CesT) family. This family consists of a number of bacterial sequences which are highly similar to the Tir chaperone protein in E. Coli. In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialized type III secretion system, which is utilized to deliver virulence effector proteins directly into the host cell cytosol. Many of the proteins secreted from such systems require small cytosolic chaperones to maintain the secreted substrates in a secretion-competent state. CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. This family also contains several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. DspF and AvrF are small (16 kDa and 14 kDa) and acidic with predicted amphipathic alpha helices in their C termini; they resemble chaperones for virulence factors secreted by type III secretion systems of animal pathogens.	1.41796e-26
NC_005863.1\|WP_014524689.1\|165322_167803_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00855281
NC_005863.1\|WP_011176710.1\|173770_174409_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.79372e-32
NC_005863.1\|WP_011176724.1\|192333_193575_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	1.37232e-21
NC_005863.1\|WP_011176703.1\|163069_164422_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381617	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	2.90046e-48
NC_005863.1\|WP_011176713.1\|177827_178661_-\|zinc-transporter-ZupT	gnl\|CDD\|235253	PRK04201, PRK04201, zinc transporter ZupT; Provisional.	4.37374e-145
NC_005863.1\|WP_014524690.1\|168124_170362_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.73636e-60
NC_005863.1\|WP_011176725.1\|193582_196600_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.30775e-64

>NC_005863.1|WP_014524691.1|175428_175719_+|CRISPR-associated-endonuclease-Cas2
MLVLISYDVSFEDPGGQRRLRRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLSEMDKEKDCLRFYYLGANWRNKVEHVGAKPAYDPEGPLIL
>NC_005863.1|WP_011176711.1|174392_175424_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTTQGTYLAKEGECIVVRVGDEVRLRVPVHSLGGVVCFGQVSCSPFLMGFAAERGLGFSFLTEHGRFLARVQGPVSGNVLLRREQYRRADSPEASAEVARSIVSAKVVNARGVLQRAMRDHGDKVDGVALEAEVLHLRACLMRLQQPAGLDAVRGIEGEAAKGYFSVFDNLILTREAAFRFEGRSRRPPLDRVNCLLSFIYTLLGHDVRSALEGVGLDSAVGFLHRDRPGRHGLALDVMEEFRAVVADRLALSLINLGKLKKSDFEIQETGAVRMTDDARKALLVAYQKRKQDEIVHPFLNERIPLGLVFHVQAMLMARWLRGDLDGYPPFVWK
>NC_005863.1|WP_011176710.1|173770_174409_+|CRISPR-associated-protein-Cas4
MAFTEDDLLPISALQHLLYCERQCALIHIERVWEENLFTTDGRILHEKVDAGEDCVRAGKRIARSVSLRSLQLGLSGVADVVEFGPDAGDVYPVEYKRGRSKRANWDRIQLCAQAMALEEMLGVPVTEGALFYGKTRRREAVAFDAALRGETVRAAARLHQFVDARHTPPAHYEASRCDACSLINLCMPRLPGKTKVRKYLAAMAEIDEETA
>NC_005863.1|WP_011176709.1|172896_173769_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
>NC_005863.1|WP_011176708.1|171055_172894_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALHGYYQRMSADPDAGMPPYGTSMENISFALVLDAKGTLRGIEDLREQEGKKLRPRKMLVPIAEKKGNGIKPNFLWENTSYILGVDAKGKQERTDKCHAAFIAHIKAYCDTADQDLAAVLQFLEHGEKDLSAFPVSEEVIGSNIVFRIEGEPGFVHERPAARQAWANCLNRREQGLCGQCLITGERQKPIAQLHPSIKGGRDGVRGAQAVASIVSFNNTAFESYGKEQSINAPVSQEAAFSYVTALNYLLNPSNRQKVTIADATVVFWAERSSPAEDIFAGMFDPPSTTAKPESSNGTPPEDSEEGSQPDTARDDPHAAARMHDLLVAIRSGKRATDIMPDMDESVRFHVLGLSPNAARLSVRFWEVDTVGHMLDKVGRHYRELEIIPQFNNEQEFPSLSTLLRQTAVLNKTENISPVLAGGLFRAMLTGGPYPQSLLPAVLGRIRAEHARPEDKSRYRLEVVTYYRAALIKAYLIRNRKLEVPVSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN
>NC_005863.1|WP_011176707.1|170375_171059_+|type-I-C-CRISPR-associated-protein-Cas5
MTHGAVKTYGIRLRVWGDYACFTRPEMKVERVSYDVMPPSAARGILEAIHWKPAIRWIVDRIHVLRPIVFDNVRRNEVSSKIPKPNPATAMRDRKPLYFLVDDGSNRQQRAATLLRNVDYVIEAHFELTDKAGAEDNAGKHLDIFRRRARAGQSFQQPCLGCREFPASFELLEGDVPLSCYAGEKRDLGYMLLDIDFERDMTPLFFKAVMEDGVITPPSRTSPEVRA
>NC_005863.1|WP_014524690.1|168124_170362_+|CRISPR-associated-helicase/endonuclease-Cas3
MADGGDEHASGHDNTLKNARYYAHSTPNPDKSDWQGLDAHLENVANLAATFAEAFGAREWGKAAGLLHDAGKATAQFTQRLEGRPVRVNHSICGARLAQEQGSTCGLLLSYAIAGHHGGLPDGGLQDGQLHHRLKHERLPADVSPPSVDIRPDVLKPPFTCRPEHPGFSLSFFTRMLFSCLTDADFLDTEAFCTPEKASARNGRSALGLVALRDALNTHLDTVERKALPSRVNDIRKTVLHDCRARASETPGLFSLTVPTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTSIIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFFESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKELVGQYGCTVVLCTATQPAVDDASLPERVRLHHVREIIADPQRLYTDLKRTEVTLAGRLTDAALAARLDGHGQVLCIVGTKPQAQAVFSLLQEREGAFHLSTNMYPEHRRRVLGTIRQRLADRLPCRVVSTSLIEAGVDVDFPVVYRAMAGLDSIAQAAGRCNREGRLPEPGQVVVYEPEKPARMPWMQRCASRAQETLRTLPEADPLGLEAIRRYFGLIYDVQELDRKDIFKRLRGQVDRDMVFKFREIANDFRFIDDEGTALVIPTGPEVEDLVRRLRGCEFPRPVLRKLQQYSVTVRHRELEKLRSAGAVEMIGDAYPVLRNLAAYSEDMGLCVDSVEVWQPEGLVS
>NC_005863.1|WP_014524689.1|165322_167803_+|hypothetical-protein
MAPLILNQPLLGPGQPGGLQAPGAPVQGAPQQAAHPLPQHMQGVAHPAVAQQAGQQHIAQPGPQGLAGQARPGGLFQNMRRWFAEVRTSHTPTAGLPAQVQIAMPGGGQVTYDGRDLAQMIRSLPNAERAAARANLSAHLAGRMQHGQTLMQDVLAGHAQPNPTAQDVADVMLFLDAKANAGGQAFSAGAFSIEDPQGHLAAFLNQCPEKYQRSSSHMSDMQRAVVDGHTNTHRGIDIPQGPNGLPHGNATTLFAVIPEGAGGQPPRRMFLKMESHGCRLSTLSGAAHQAGQDGVPDRPVRLRTDLREAIGHAFSFIATRGAGSALGSRKERIPDGVKQAFKDFTRESAAILTPAQQTMLQAGNPLGSSGGIRTMMANMRTTLAAMPAGPERNRFAGLCGNLVRSMERSLTRADHMEARIGNEVMFDAADFAPAPGGVAGGAPGGPGGPGGPGAGGAAPRPVGPQSPERLICPTPLTPAQEAVLAPLSPARRLQVLAALPQATATLTAMGQLGFAGQPIAGGPMGPAAQYMPLHDQLVQCIEGTSDSIDSATENLGALVDLALAGMTDQDAQAVYAELTSPKGEQMRSAAIAHTMAFTVGARMTPASEVAGHLSKFGFLTGELVDRLETRLQVPQAQKQPLMPSIDPHVQRSLTGIATNDFGAGVLNEAAPGVAQAFVLDVVERSDTLMVNGVDVSTTEGVTQAIADPALRLALTRLANQASMAPLVELTGSTLGSGMAFQVIGAGPGGGGGGGGTRYTFDTATGRFTATRTEPAAHLMTGHGMEELQPGSATTMSFSCTLRMVDGQPVISDTVANLDYNWDIQPQ
>NC_005863.1|WP_011176704.1|164795_165263_+|CesT-family-type-III-secretion-system-chaperone
MTIRENAQQILDGLAETLQCGPLAFDDANKVDFGIDEDMGAIIYLSEDTSSLVVSIIPGRVDPDDTGLLYDILCGNYMWGFSAGGNMGIDRETGLLSIHRLIELPVDVAGDPMAFPELFAAMVGAARYWRARLAPEGTAPAASGAPTDFSGMIRI
>NC_005863.1|WP_011176703.1|163069_164422_+|transglycosylase-SLT-domain-containing-protein
MHHTRATHPHRTMPATKRTWPALAGCCALAVLVLGPWETVTAETGQPALYGIISEEVNVSERQPVRLVPHGPLVRGATPGAGGVPDDSDVPGANVAGGANGADKTNGTPDADGAPHANSGHGVHGVDGLDDADAATASARVPASSADVASGHAETTTPPADTAGVMPQTAVPQRPARPVRPDAQTATHSPAPSGIPHAVGDGARVAPSGRASGTTTSQPSGPAARPADAPAAVTTATPASATRYGTTSGTVHSIPSVSQHATASVSEHATASASQHATASVSQHATTSENLLDSMDVYALSPHAARLALPRMVPVVVAERLRVARPAFPFWESAIDKASRTHALDPRLIAAVIRAESGYDPGAVSPRGAQGVMQIMPATQRELGLDDPFDPEANVEAGSRYLRQQLDRFGSLELALAAYNAGPGNVLKYGGMPPFDETRTFVRRVLDGMR
>NC_005863.1|WP_011176713.1|177827_178661_-|zinc-transporter-ZupT
MIDDGNVLLAFGLTLFAGLATGVGSAIAFFARRTDTRFLAVALGFSAGVMIYVSFVEIFRKAYEVLATQTTEVLASWYTVAAFFSGALLIAVIDKLVPGYENPHEMHTVEEMDMGRAALPQDTKHDFVRLKRAGVLAAVAIGIHNFPEGLAAFSAALSDPALGVAIAVAIAIHNIPEGMAVSVPIYYATGDRRKAFLYSFLSGVSEPIGALVGYVVLRPFFTPMVFGLLFASVAGIMVYISLDQLLPSAEEYGEHHLCILGVFSGMGVMALSLLLFL
>NC_005863.1|WP_011176714.1|178782_179430_-|response-regulator-transcription-factor
MLPVDPSPARADLRFLLIDDHPAVRQGLNLLLESHGYTPGVEAATRADAKGCLEQATFDLALLDLSLADGSGLDLLADLAEHGVRILVYSMHEDPGTIDRALRCGANGYVTKREDPSVLLEGIEGVLRGERFVSERAGSSLDETAGARAMDPLFLLSDQERAIFSAVGRGESNMDVAGSLGISPRTVETYLARMVNKLGLSNVRTLRKFAINWRE
>NC_005863.1|WP_011176715.1|179416_181501_-|sensor-histidine-kinase
MKRATSPPHGPMMNRNAPRLSFPTRMLRAFHPVPLLVVLLVSVFILPPYGPARAADGLQAEDGVLDLRDFDPETMGPARLDGAWEFYWDRLLTPQDLAANPAPSPSGLLSLPGTWRGMPVDGERLGGTGQATLRLRLRLWPEANTLTLRLFDIPMAYRLWANGQLVAMNGVVGTDADSETPLRSLVLATITPEGENLELVLQISNHHFRAGGVPEGLLLAPPGPLETERDRTWTFSYFFAGCLLITLLYHLFLFHLDRKQVSAGYFSGFCLCILCFCMTSNTSFWAIRRFLPPLPPQWSEYVPLFFYMACAPMLFRFYYSLYPKVFHPAVRHLVDLRFAIFLLLLPIAPDHRISEYIAFSILVGLGCAIYYVVRLCSCARRGMNGAGLLLLGSAASLLASLNDGLSHIKHINTPYLIEFGMLFLIVTQSLALAKRFSHAFASVGKLSGELERKNQSLLAEMEERNRLEQEVINISEEERRRISHELHDGLCQKLTGARLRASILSKRLAGTDDSTTMDSLAALLDASTDDAYRTSRGLWPVEHDPAMPGPSLDDLARRIAKDTGIDVRLEMRRHCGRCTNPNMRTLYRIAQEALTNAAKHAQAHTIRVRLRCPAQDGVILTVRDDGIGRTASARQGARTGGLGLGIMAHRAGVIHAKLTIEDAPQGGTIVTCAAPCDRHASPSSTRRTPPDASR
>NC_005863.1|WP_014524693.1|181664_183830_-|autotransporter-domain-containing-protein
MFILRHVNVLLRDVALPSLSRVVLLILAVASVGFVFLVPKHGVSATVDYASNYRDVIGNAPFLNGPISIGGTNNLASHAENVYSSGNIVNINGGVVDLGICGGYYNGTVDSDVASSGNAVTIGSAFSGSNSIDVYGGFARNVNAFSMTASDNTVTVNGGTARSVYGGFAYVASMTGPCVATASGNTVNINEGTIYGVYGGYAGANFGAGPHTVSGNTINISGGTIDDVFGGYVDTHYGTGQVTNNVVTISGAPNLATARLYGGYLGMKTDGDAFSGNTLNVKTAGLDVASLSNFQYVNFYLPSSLSAGDTVLNVTGTADLTGSAGRSSTVNVGIDGGSSPLQVGDTITLIDAGTLVTNGGLNSTARGTGMQGVTLVYKFDLATEDNRLLATVSTDAVPAVNEQTKTLSEGFVSGMGMVTQAADVAAGQGMDSAVSAAKGGSAAGGGAPAGFGALSGGSVRYNTGSHVDMHSASLMAGLAWGADVPLGRLTFGPFLEYGTGSYNTYNSFSDAASVEGDGSTRYFGGGVLGRMDLADTGPGHVYVEASARVGELHNEYESSDLRDASGRSAEYDSSSMYYGLHMGTGYVWSMTENASLDIHGKYFWTRQEGDSVKLSTGDPIDFKDVDSNRLRLGSRFSYMVTEHIVPYIGAAYEHEFDGTARASTNGYAMEAPSMGGDTGIGELGLMYTPLASLPVSFDLGVQNAVGRREGVTGSLQIKYEF
>NC_005863.1|WP_011176720.1|184785_186333_-|sigma-54-interacting-transcriptional-regulator
MTCTVHALKLKALRAISNVIDRALQLEDALTETLRVLAETLAMQRGTITLLDGETGQLVIAASHGLSREEQERGVYRLDEGVTGTIFSTGRPYLVRDVRNDPLFLDRTGARRVERGKVSFLGVPILSKGRPVGVLNVDRLFGDAVSCAEDIEFLEVVATLVAQFLSLNEQVAARERALRRENMQLRTRVLDSRGDFIVGRSGAMAEVQRYIQRVAGTRATVLLLGESGVGKTLIARLVHTLSEREHHPFIKVNCASIPESLLEAELFGHEKGAFTGAVSARMGRFEEAHEGTVFLDEIGELPPGIQAKLLRVLQEREFERLGSNRTRRVNVRIVAATNRDLAAQVDAGRFRQDLYYRLCVFPIRVPPLRERPEDITGLLNHFLAKVARDYGRSLVLAPDALELLQRYAWPGNVREMENLIERMAILTDGTLADRRFVESLLEQAPAGDDGQMRAGLAVPPSLREVEQGELLAALRRNGWIQHKAARELGLTPRQMGYRIRQWGLAPLVASERAKG
>NC_005863.1|WP_150103631.1|187088_187322_+|hypothetical-protein
MTRGLWADGGNTRADDARGVRGCCRKTYGGVPACVLPAPPAAILPASIRHDGAVNGMTRQQPAHNMLHGVAVTGILP
>NC_005863.1|WP_014524694.1|187548_191274_+|DUF3626-domain-containing-protein
MSPLRNVGGVPQPAQGTGISASVGRLGPHSVQIGTNPPVRLDQIRGNDVPFAGFRTATRVASAKTGARQNAASALRALGTTGGAFDVAGILGSCKALQTHLDRLQRHGEIHGNMDDAAMAAFAPEVESLSNTELANVYQRLLSPETALLRRALQTEIRQNPHNADALSASASLYTLEALVLNEITNRVVVAQGLAPADAVPALSARYGAAIDGMGQVQRHAVQGDMTAVSLHVLANVASDSAARREKVDDVAQDIVQRRALDPIDARQFGDVLRSADLTINVDLGFLFGMSGPKPLLKAGGPWEHLFHSIEGAPDEAARQAAIAVKGEGYILKRDNVERGLFPELSEDRPAVANDRPTYAALNLLRFDTGQAASYGTVALHLKPEVARRATYTVDDTFFALRLRHTEAGREAVAALLPGWPGITPEHKAEMMRPGSDLRRQLEDVMDAMARKGTFRGDLFKNELRLPGLEDDENSALAGLFTRAFKDTDATRKAMVTYDNLEALLPELGEVDAVRLARAAVDREAGGPGRVATQCNYIEAQLHGPLVLARDVQEIVIVREFGADTITDPVQQAWMRAVIAVLGGKTPETADMDMFTPAQRADLATIREQLGGATIPVRIEEQIPELGLKQEIQAEDRVFYAAHLDQPGIDARVRAMDDDATFRGFMTSALTTATGGSSIVQVMGDVPLIPDADLAAVRTAFSATVERFRHAPERGQYDENALLNDCMNRVLREHVGADRMDCLAAVADLTPDPALRGRLRDMVMAQAVPMTGAAFRAVAATALEGAALLRDVTRQAPEGEMTHEAMAARLGTVAGAFSQRLAALPAHRALGAPGEAGEAGAAPTVAEARGRLLQQCGGMAFALAGLDGDATARAALAARLDAPDMRSLSAVTQRLGDPARGFAADAAFGQVQAFNALLSGMRTALGEQAMASPAPFGHELSLVPPEDRARLHAALPGLAATLDASFPAHPAFPVAAHPERMPVGPAAHRRFLLDMLPIYHGHEMPGQFDHGAGYHGRGHICRAFIFASTMAGIMESMGHTVDRTALLCGIAGHDAGRTSNGADTPAQEAESARLALERMHASFGPDTLGADYEREFEAAIVGHASPTLESMLLNAADSLDIGRVKSFDFKYMPFLRGGPQEGPQAAVPDYQALREQLHEEADLLARLTDPMTQVRDLRMKLAEAGELETMVEVQRGASDAVRGQLALDSEEDFLAFVEGKIRAHPDMFPLLTRHYLAPLDA
>NC_005863.1|WP_011176723.1|191284_191755_+|CesT-family-type-III-secretion-system-chaperone
MDMTTLVESLGRACGIDLAFTEGRCTLRFDDAHEVTFEQDGDALLLHGVVGDDSRLADPVNLRLLLAASCLGAETDGGALSLWPRTGDVVLWKRYDAFTDYPAFERAVNAFLAQVIHWKGRLDALPAVASGNAGGAGGATGMPGASGPLPGGMIMV
>NC_005863.1|WP_011176724.1|192333_193575_+|ABC-transporter-substrate-binding-protein
MIRKTGLCLIPLLILAAWTTLAGLAHHAPAFSAAEALAAPGQPAAATDTRTGHDSPRDPAAAAGKVWRVAYIEGGPYTDYQQILAGTVRGLARLGIIPDGNVPVPQNSESTREMWQWLADHASGGRLQFIADGYYSADWNPDRRTANRDALLKRLREKGDVDMVFAFGTWAGLDMANDQHKVPTFSMSVTDAVGAGIVKSVQDSGFDHVHAQLEPGRYERQLAVFHDVFHFKRLGVPFDDRPEGRASIAMPVIEKSARELGFTIVPCPTRLDVPDLDLAFDNLRQCVETLSTTSDAIYLTTNTGMQGKRMVELLQPVIRAGIPTFSQSGPEETKLGVLLSLAQASFDDVGMFEAEAVSRVLSGAKPREVSQVFEGPLGLAINLRMAMLIGWNPPFEILAAVDEIHQQIRNAEQ
>NC_005863.1|WP_011176725.1|193582_196600_+|MFS-transporter
MPHMTVNPARTLRFKVMAWGLLALLCAQMFYGVLVVSSLYRQYRGPMLTVQAIAGDDLARRLGRMARLGKPLDRISHLDAMLAPFRDTTSATALYVTDAAGAVLAAWDADTVLPRLEPPAQTSPVGVTGAQEFRRDEATWLVSPILGKDGDLVGRVLLRTDPQRLQAALRDAASYLPLFASVAGGSALLLVVLCLTLLPASGGAGQTGHAGQTGQARQTGQAVLAGQAGRAPREGRSEPAGHTLDARQWGRRARVALVAPLLVGQLCCSAALYAPLKGLHQRQSADIAAQLAEQLGRDLTSIVHKGVALGDIPGIDLHLRSLQQALPQVAAMGVTDTAGRLLAGATASTTLTPEAWLRLSDDGPTGRFDVPPPPGAGRAAPPSPADGNAQGADAGTGDTVTGGAAAGEAVPENTATGNAAAGDTISGGAGAGGGEVRVLMSGAAIRTGLREALLDTATVAVVAMLLLMELASMLLMHAHRALDGMGDAAHAPTREDGANAPDAPGINDINGISGITHTPGSTGGTATASLTDSPRLADTAKLMGTEDRATTDNLTDTPPRAHAAGRATAHANLLAETPGFMRPVIFFCMFAIDMGVSFIPLRLAELDATLFGLPRDVVMGLPVSAEMFMVAVAILLGGAAGERFGWRPLLLCGVLLAALGNLVSGTAASALGYIAARGIAGAGYGCINLAAQLHVMNHSDESNRAGNLAHMFAGLFAGAMCGSATGGLVADRLGYGPVFFVAAGMLLAVLGVLALCPARPHAPALGSRPAPHPGQTPEATSLDTAHDADGNAAGVLAFLRDRRMVGLLVCNIMPVAFVTVCLFQFFIPVYLSEGGASPADIGRVSMLFCLVVVFLGPLCGRLIDATPRKDRMLVVAGIAGALAIAALLMGGGIAEAVLAVVMLGVSNAIAASAQGTYALSLPVALRMGRARTMGVYNITERVGQVIGPVTFAVLLSLLGREGGLLAMAAGVAALTLLFMWLSGGDTARTAADATAVTTTGRHPNT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_005863_1	1.24\|177446\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177446-177480	35	NC_002937.3	1231477-1231511	2	0.943

1. spacer 1.24|177446|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to position: 1231477-1231511, mismatch: 2, identity: 0.943

ctgtgcatcggttgtggcaggcgttgcagcctgaa	CRISPR spacer
ctctgcctcggttgtggcaggcgttgcagcctgaa	Protospacer
** *** ****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_005863_1	1.1\|175930\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	175930-175962	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170487-170519	0	1.0
NC_005863_1	1.1\|175930\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	175930-175962	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	175930-175962	0	1.0
NC_005863_1	1.2\|175995\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	175995-176029	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170552-170586	0	1.0
NC_005863_1	1.2\|175995\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	175995-176029	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	175995-176029	0	1.0
NC_005863_1	1.3\|176062\|36\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176062-176097	36	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170619-170654	0	1.0
NC_005863_1	1.3\|176062\|36\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176062-176097	36	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176062-176097	0	1.0
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170687-170719	0	1.0
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176130-176162	0	1.0
NC_005863_1	1.5\|176195\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176195-176228	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170752-170785	0	1.0
NC_005863_1	1.5\|176195\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176195-176228	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176195-176228	0	1.0
NC_005863_1	1.6\|176261\|32\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176261-176292	32	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170818-170849	0	1.0
NC_005863_1	1.6\|176261\|32\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176261-176292	32	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176261-176292	0	1.0
NC_005863_1	1.7\|176325\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176325-176358	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170882-170915	0	1.0
NC_005863_1	1.7\|176325\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176325-176358	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176325-176358	0	1.0
NC_005863_1	1.8\|176391\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176391-176425	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	170948-170982	0	1.0
NC_005863_1	1.8\|176391\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176391-176425	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176391-176425	0	1.0
NC_005863_1	1.9\|176458\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176458-176492	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171015-171049	0	1.0
NC_005863_1	1.9\|176458\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176458-176492	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176458-176492	0	1.0
NC_005863_1	1.10\|176525\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176525-176559	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171082-171116	0	1.0
NC_005863_1	1.10\|176525\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176525-176559	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176525-176559	0	1.0
NC_005863_1	1.11\|176592\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176592-176626	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171149-171183	0	1.0
NC_005863_1	1.11\|176592\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176592-176626	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176592-176626	0	1.0
NC_005863_1	1.12\|176659\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176659-176691	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171216-171248	0	1.0
NC_005863_1	1.12\|176659\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176659-176691	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176659-176691	0	1.0
NC_005863_1	1.13\|176724\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176724-176756	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171281-171313	0	1.0
NC_005863_1	1.13\|176724\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176724-176756	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176724-176756	0	1.0
NC_005863_1	1.14\|176789\|36\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176789-176824	36	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171346-171381	0	1.0
NC_005863_1	1.14\|176789\|36\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176789-176824	36	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176789-176824	0	1.0
NC_005863_1	1.15\|176857\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176857-176889	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171414-171446	0	1.0
NC_005863_1	1.15\|176857\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176857-176889	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176857-176889	0	1.0
NC_005863_1	1.16\|176922\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176922-176955	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171479-171512	0	1.0
NC_005863_1	1.16\|176922\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176922-176955	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176922-176955	0	1.0
NC_005863_1	1.17\|176988\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176988-177020	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171545-171577	0	1.0
NC_005863_1	1.17\|176988\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176988-177020	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	176988-177020	0	1.0
NC_005863_1	1.18\|177053\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177053-177085	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171610-171642	0	1.0
NC_005863_1	1.18\|177053\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177053-177085	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177053-177085	0	1.0
NC_005863_1	1.19\|177118\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177118-177150	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171675-171707	0	1.0
NC_005863_1	1.19\|177118\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177118-177150	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177118-177150	0	1.0
NC_005863_1	1.20\|177183\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177183-177216	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171740-171773	0	1.0
NC_005863_1	1.20\|177183\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177183-177216	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177183-177216	0	1.0
NC_005863_1	1.21\|177249\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177249-177281	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171806-171838	0	1.0
NC_005863_1	1.21\|177249\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177249-177281	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177249-177281	0	1.0
NC_005863_1	1.22\|177314\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177314-177347	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171871-171904	0	1.0
NC_005863_1	1.22\|177314\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177314-177347	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177314-177347	0	1.0
NC_005863_1	1.23\|177380\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177380-177413	34	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	171937-171970	0	1.0
NC_005863_1	1.23\|177380\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177380-177413	34	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177380-177413	0	1.0
NC_005863_1	1.24\|177446\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177446-177480	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	172003-172037	0	1.0
NC_005863_1	1.24\|177446\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177446-177480	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177446-177480	0	1.0
NC_005863_1	1.25\|177513\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177513-177547	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	172070-172104	0	1.0
NC_005863_1	1.25\|177513\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177513-177547	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177513-177547	0	1.0
NC_005863_1	1.26\|177580\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177580-177612	33	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	172137-172169	0	1.0
NC_005863_1	1.26\|177580\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177580-177612	33	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177580-177612	0	1.0
NC_005863_1	1.27\|177645\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177645-177679	35	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	172202-172236	0	1.0
NC_005863_1	1.27\|177645\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177645-177679	35	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	177645-177679	0	1.0
NC_005863_1	1.26\|177580\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177580-177612	33	NC_011881	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence	147891-147923	7	0.788
NC_005863_1	1.26\|177580\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177580-177612	33	NZ_CP022750	Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence	73647-73679	7	0.788
NC_005863_1	1.26\|177580\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177580-177612	33	NZ_CP009453	Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence	174396-174428	7	0.788
NC_005863_1	1.21\|177249\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177249-177281	33	NC_021517	Lactobacillus plantarum 16 plasmid Lp16E, complete sequence	15738-15770	8	0.758
NC_005863_1	1.7\|176325\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176325-176358	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	374238-374271	9	0.735
NC_005863_1	1.20\|177183\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177183-177216	34	NC_019362	Sulfitobacter guttiformis plasmid pSG53, complete sequence	49573-49606	9	0.735
NC_005863_1	1.22\|177314\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177314-177347	34	NZ_AP014811	Methylorubrum populi strain P-1M plasmid pMPPM02, complete sequence	38837-38870	9	0.735
NC_005863_1	1.22\|177314\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177314-177347	34	AP013359	Uncultured Mediterranean phage uvMED DNA, complete genome, group G1, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C23	17538-17571	9	0.735
NC_005863_1	1.23\|177380\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	177380-177413	34	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	80080-80113	9	0.735
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	107842-107874	10	0.697
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	252652-252684	10	0.697
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP031474	Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence	320295-320327	10	0.697
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	172616-172648	10	0.697
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP009620	Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence	216170-216202	10	0.697
NC_005863_1	1.4\|176130\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176130-176162	33	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	76002-76034	10	0.697
NC_005863_1	1.7\|176325\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176325-176358	34	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1994108-1994141	10	0.706
NC_005863_1	1.7\|176325\|34\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176325-176358	34	NC_048860	Microbacterium phage Arete, complete genome	25582-25615	10	0.706
NC_005863_1	1.13\|176724\|33\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176724-176756	33	NZ_CP009289	Paenibacillus durus strain DSM 1735 plasmid unnamed, complete sequence	6381-6413	10	0.697
NC_005863_1	1.8\|176391\|35\|NC_005863\|PILER-CR,CRISPRCasFinder,CRT	176391-176425	35	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	290978-291012	11	0.686

1. spacer 1.1|175930|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

cagtctcgttaccctgtcgcggagggcgtcgat	CRISPR spacer
cagtctcgttaccctgtcgcggagggcgtcgat	Protospacer
*********************************

2. spacer 1.1|175930|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

cagtctcgttaccctgtcgcggagggcgtcgat	CRISPR spacer
cagtctcgttaccctgtcgcggagggcgtcgat	Protospacer
*********************************

3. spacer 1.2|175995|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

gccatgctcaggctggcgagtgcgccactcatcaa	CRISPR spacer
gccatgctcaggctggcgagtgcgccactcatcaa	Protospacer
***********************************

4. spacer 1.2|175995|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

gccatgctcaggctggcgagtgcgccactcatcaa	CRISPR spacer
gccatgctcaggctggcgagtgcgccactcatcaa	Protospacer
***********************************

5. spacer 1.3|176062|36|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

cttgtttggaggcaccaagaatcaatcaggcatcgc	CRISPR spacer
cttgtttggaggcaccaagaatcaatcaggcatcgc	Protospacer
************************************

6. spacer 1.3|176062|36|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

cttgtttggaggcaccaagaatcaatcaggcatcgc	CRISPR spacer
cttgtttggaggcaccaagaatcaatcaggcatcgc	Protospacer
************************************

7. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
ttgagcgcggcgagtgcgtggacatcgtggcga	Protospacer
*********************************

8. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
ttgagcgcggcgagtgcgtggacatcgtggcga	Protospacer
*********************************

9. spacer 1.5|176195|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

atcacacacctcgcttgctctacgttcctgcatc	CRISPR spacer
atcacacacctcgcttgctctacgttcctgcatc	Protospacer
**********************************

10. spacer 1.5|176195|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

atcacacacctcgcttgctctacgttcctgcatc	CRISPR spacer
atcacacacctcgcttgctctacgttcctgcatc	Protospacer
**********************************

11. spacer 1.6|176261|32|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

cagttggaggaagaccatcaacagttccatag	CRISPR spacer
cagttggaggaagaccatcaacagttccatag	Protospacer
********************************

12. spacer 1.6|176261|32|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

cagttggaggaagaccatcaacagttccatag	CRISPR spacer
cagttggaggaagaccatcaacagttccatag	Protospacer
********************************

13. spacer 1.7|176325|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

acgccgccggtcgcgccgtgctcaagtgcatttg	CRISPR spacer
acgccgccggtcgcgccgtgctcaagtgcatttg	Protospacer
**********************************

14. spacer 1.7|176325|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

acgccgccggtcgcgccgtgctcaagtgcatttg	CRISPR spacer
acgccgccggtcgcgccgtgctcaagtgcatttg	Protospacer
**********************************

15. spacer 1.8|176391|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgatgcactgcaccgccatgccagcctgcgccg	CRISPR spacer
tgcgatgcactgcaccgccatgccagcctgcgccg	Protospacer
***********************************

16. spacer 1.8|176391|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgatgcactgcaccgccatgccagcctgcgccg	CRISPR spacer
tgcgatgcactgcaccgccatgccagcctgcgccg	Protospacer
***********************************

17. spacer 1.9|176458|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

cgcgccgcagggtttcaagccgccacgctggacgg	CRISPR spacer
cgcgccgcagggtttcaagccgccacgctggacgg	Protospacer
***********************************

18. spacer 1.9|176458|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

cgcgccgcagggtttcaagccgccacgctggacgg	CRISPR spacer
cgcgccgcagggtttcaagccgccacgctggacgg	Protospacer
***********************************

19. spacer 1.10|176525|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

tcaacgcccacgccctccgcgatgcacaagtggcg	CRISPR spacer
tcaacgcccacgccctccgcgatgcacaagtggcg	Protospacer
***********************************

20. spacer 1.10|176525|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

tcaacgcccacgccctccgcgatgcacaagtggcg	CRISPR spacer
tcaacgcccacgccctccgcgatgcacaagtggcg	Protospacer
***********************************

21. spacer 1.11|176592|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

gccccgaccgacatggtgcagcgtgccatcacggg	CRISPR spacer
gccccgaccgacatggtgcagcgtgccatcacggg	Protospacer
***********************************

22. spacer 1.11|176592|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

gccccgaccgacatggtgcagcgtgccatcacggg	CRISPR spacer
gccccgaccgacatggtgcagcgtgccatcacggg	Protospacer
***********************************

23. spacer 1.12|176659|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagaaggcgcgtgaggtcgcagccgaacttg	CRISPR spacer
ggcagaaggcgcgtgaggtcgcagccgaacttg	Protospacer
*********************************

24. spacer 1.12|176659|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagaaggcgcgtgaggtcgcagccgaacttg	CRISPR spacer
ggcagaaggcgcgtgaggtcgcagccgaacttg	Protospacer
*********************************

25. spacer 1.13|176724|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

cgaagaattacgcgcagtacgaaattgacgagc	CRISPR spacer
cgaagaattacgcgcagtacgaaattgacgagc	Protospacer
*********************************

26. spacer 1.13|176724|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

cgaagaattacgcgcagtacgaaattgacgagc	CRISPR spacer
cgaagaattacgcgcagtacgaaattgacgagc	Protospacer
*********************************

27. spacer 1.14|176789|36|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

atggcggttgctgacgttgcgatgatgcagcggcac	CRISPR spacer
atggcggttgctgacgttgcgatgatgcagcggcac	Protospacer
************************************

28. spacer 1.14|176789|36|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

atggcggttgctgacgttgcgatgatgcagcggcac	CRISPR spacer
atggcggttgctgacgttgcgatgatgcagcggcac	Protospacer
************************************

29. spacer 1.15|176857|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

aagtcgcaggcttgcgaagcctacacgcgcaag	CRISPR spacer
aagtcgcaggcttgcgaagcctacacgcgcaag	Protospacer
*********************************

30. spacer 1.15|176857|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

aagtcgcaggcttgcgaagcctacacgcgcaag	CRISPR spacer
aagtcgcaggcttgcgaagcctacacgcgcaag	Protospacer
*********************************

31. spacer 1.16|176922|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

acggtgatgccaagaagtgtcacaagctcgtagt	CRISPR spacer
acggtgatgccaagaagtgtcacaagctcgtagt	Protospacer
**********************************

32. spacer 1.16|176922|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

acggtgatgccaagaagtgtcacaagctcgtagt	CRISPR spacer
acggtgatgccaagaagtgtcacaagctcgtagt	Protospacer
**********************************

33. spacer 1.17|176988|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

agcctcaacgcgcacggggcagtgtactccgcg	CRISPR spacer
agcctcaacgcgcacggggcagtgtactccgcg	Protospacer
*********************************

34. spacer 1.17|176988|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

agcctcaacgcgcacggggcagtgtactccgcg	CRISPR spacer
agcctcaacgcgcacggggcagtgtactccgcg	Protospacer
*********************************

35. spacer 1.18|177053|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

tccctggcggcgcagagcgtactgttcagggat	CRISPR spacer
tccctggcggcgcagagcgtactgttcagggat	Protospacer
*********************************

36. spacer 1.18|177053|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

tccctggcggcgcagagcgtactgttcagggat	CRISPR spacer
tccctggcggcgcagagcgtactgttcagggat	Protospacer
*********************************

37. spacer 1.19|177118|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

gatctcataggcgttatggagcgtggctcgtga	CRISPR spacer
gatctcataggcgttatggagcgtggctcgtga	Protospacer
*********************************

38. spacer 1.19|177118|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

gatctcataggcgttatggagcgtggctcgtga	CRISPR spacer
gatctcataggcgttatggagcgtggctcgtga	Protospacer
*********************************

39. spacer 1.20|177183|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

atccagataccgcaggatgatgacaactacctgt	CRISPR spacer
atccagataccgcaggatgatgacaactacctgt	Protospacer
**********************************

40. spacer 1.20|177183|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

atccagataccgcaggatgatgacaactacctgt	CRISPR spacer
atccagataccgcaggatgatgacaactacctgt	Protospacer
**********************************

41. spacer 1.21|177249|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

aacatcggaacggatgttgaccgtgttggtgga	CRISPR spacer
aacatcggaacggatgttgaccgtgttggtgga	Protospacer
*********************************

42. spacer 1.21|177249|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

aacatcggaacggatgttgaccgtgttggtgga	CRISPR spacer
aacatcggaacggatgttgaccgtgttggtgga	Protospacer
*********************************

43. spacer 1.22|177314|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

gacctgccggtggtgacaacggcaatcctgttgc	CRISPR spacer
gacctgccggtggtgacaacggcaatcctgttgc	Protospacer
**********************************

44. spacer 1.22|177314|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

gacctgccggtggtgacaacggcaatcctgttgc	CRISPR spacer
gacctgccggtggtgacaacggcaatcctgttgc	Protospacer
**********************************

45. spacer 1.23|177380|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

tactatccccaagccgcccgtctcgaatcggcag	CRISPR spacer
tactatccccaagccgcccgtctcgaatcggcag	Protospacer
**********************************

46. spacer 1.23|177380|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

tactatccccaagccgcccgtctcgaatcggcag	CRISPR spacer
tactatccccaagccgcccgtctcgaatcggcag	Protospacer
**********************************

47. spacer 1.24|177446|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtgcatcggttgtggcaggcgttgcagcctgaa	CRISPR spacer
ctgtgcatcggttgtggcaggcgttgcagcctgaa	Protospacer
***********************************

48. spacer 1.24|177446|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtgcatcggttgtggcaggcgttgcagcctgaa	CRISPR spacer
ctgtgcatcggttgtggcaggcgttgcagcctgaa	Protospacer
***********************************

49. spacer 1.25|177513|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

acctgatcgatacggttatgcccgtaacgctgcgc	CRISPR spacer
acctgatcgatacggttatgcccgtaacgctgcgc	Protospacer
***********************************

50. spacer 1.25|177513|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

acctgatcgatacggttatgcccgtaacgctgcgc	CRISPR spacer
acctgatcgatacggttatgcccgtaacgctgcgc	Protospacer
***********************************

51. spacer 1.26|177580|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

gcgggcgggggcggtgcatcgctcggcatcgag	CRISPR spacer
gcgggcgggggcggtgcatcgctcggcatcgag	Protospacer
*********************************

52. spacer 1.26|177580|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

gcgggcgggggcggtgcatcgctcggcatcgag	CRISPR spacer
gcgggcgggggcggtgcatcgctcggcatcgag	Protospacer
*********************************

53. spacer 1.27|177645|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 0, identity: 1.0

agcgaaagtgcccacgcatcagtcaccttggctat	CRISPR spacer
agcgaaagtgcccacgcatcagtcaccttggctat	Protospacer
***********************************

54. spacer 1.27|177645|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 0, identity: 1.0

agcgaaagtgcccacgcatcagtcaccttggctat	CRISPR spacer
agcgaaagtgcccacgcatcagtcaccttggctat	Protospacer
***********************************

55. spacer 1.26|177580|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_011881 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence) position: , mismatch: 7, identity: 0.788

gcgggcgggggcggtgcatcgctcggcatcgag	CRISPR spacer
ggcggcgagggcggtgcttcgctcggcggcaag	Protospacer
*  ****.********* *********. *.**

56. spacer 1.26|177580|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022750 (Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.788

gcgggcgggggcggtgcatcgctcggcatcgag--	CRISPR spacer
gcgggcgggagcggttcatcgctc--ccgccagct	Protospacer
*********.***** ********  *  * **

57. spacer 1.26|177580|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009453 (Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

gcgggcgggggcggtgcatcgctcggcatcgag--	CRISPR spacer
gcgggcgggagcggttcatcgctc--ccgccagct	Protospacer
*********.***** ********  *  * **

58. spacer 1.21|177249|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_021517 (Lactobacillus plantarum 16 plasmid Lp16E, complete sequence) position: , mismatch: 8, identity: 0.758

aacatcggaacggatgttgaccgtgttggtgga	CRISPR spacer
taatttagaccgggtgttgaccgtgttggtgca	Protospacer
 *  *..** ***.***************** *

59. spacer 1.7|176325|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.735

acgccgccggtcgcgccgtgctcaagtgcatttg	CRISPR spacer
acgccgccggtcgcgccgtgcacgagcacccggt	Protospacer
********************* *.**..* .

60. spacer 1.20|177183|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_019362 (Sulfitobacter guttiformis plasmid pSG53, complete sequence) position: , mismatch: 9, identity: 0.735

atccagataccgcaggatgatgacaactacctgt	CRISPR spacer
ccccagatagcgcaggatgataacaaccgacggc	Protospacer
 .******* ***********.*****.. * *.

61. spacer 1.22|177314|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014811 (Methylorubrum populi strain P-1M plasmid pMPPM02, complete sequence) position: , mismatch: 9, identity: 0.735

gacctgccggtggtgacaacggcaatcctgttgc	CRISPR spacer
ggcgatccggtggtggcgacggcaatcctggatc	Protospacer
*.*   *********.*.************   *

62. spacer 1.22|177314|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to AP013359 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G1, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C23) position: , mismatch: 9, identity: 0.735

gacctgccggtggtgacaacggcaatcctgttgc	CRISPR spacer
tgcttctcactgttggcaacggcaatcctgttgc	Protospacer
 .*.* .*. ** **.******************

63. spacer 1.23|177380|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

tactatccccaagccgcccgtctcgaat--cggcag	CRISPR spacer
aggcatccccaacccacccgtctcgaatgacgcc--	Protospacer
 . .******** **.************  ** *

64. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

65. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

66. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031474 (Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

67. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

68. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009620 (Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

69. spacer 1.4|176130|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 10, identity: 0.697

ttgagcgcggcgagtgcgtggacatcgtggcga	CRISPR spacer
gttcgcgcggcgagtgcgcggacttcgtccgcc	Protospacer
 *  **************.**** ****

70. spacer 1.7|176325|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.706

acgccgccggtcgcgccgtgctcaagtgcatttg	CRISPR spacer
cagccgccggtcgcgccgagcgcaaggggcagcg	Protospacer
  **************** ** **** *    .*

71. spacer 1.7|176325|34|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NC_048860 (Microbacterium phage Arete, complete genome) position: , mismatch: 10, identity: 0.706

acgccgccggtcgcgccgtgctcaagtgcatttg	CRISPR spacer
agcccgccggtcgcgcgatgctcaagtactggga	Protospacer
*  ************* .*********.*    .

72. spacer 1.13|176724|33|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009289 (Paenibacillus durus strain DSM 1735 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

cgaagaattacgcgcagtacgaaattgacgagc	CRISPR spacer
cgaagaataatgcgcagtacgaaaaaactatga	Protospacer
******** *.*************  . .. *

73. spacer 1.8|176391|35|NC_005863|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 11, identity: 0.686

tgcgatgcactgcaccgccatgccagcctgcgccg	CRISPR spacer
tgcgatacactgcaccgccttgccaagttcttgga	Protospacer
******.************ *****. .* .   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_002937

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_002937_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002937_1

495669-495757

Orphan

Consensus_repeat	Method
CCCGGCACCCTGCGCACGCGGGGCGTCT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_002937_1

>merge|NC_002937|1|495669-495757|CRISPRCasFinder
CCCGGCACCCTGCGCACGCGGGGCGTCTGTAGGTGGACACGAGGCCCTCGCTCACATTGGCCCCGGCACCCTGCGCACGCGGGGCGTCT

>NC_002937|1|1|495669-495757|CRISPRCasFinder
CCCGGCACCCTGCGCACGCGGGGCGTCT	GTAGGTGGACACGAGGCCCTCGCTCACATTGGC
CCCGGCACCCTGCGCACGCGGGGCGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002937.3\|WP_010937752.1\|504168_505893_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NC_002937.3\|WP_010937741.1\|487638_489585_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|223941
NC_002937.3\|WP_010937753.1\|506041_507589_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NC_002937.3\|WP_010937755.1\|508292_509438_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_002937.3\|WP_010937745.1\|492211_495337_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NC_002937.3\|WP_010937754.1\|507581_507899_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NC_002937.3\|WP_014524239.1\|501195_501951_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_002937.3\|WP_010937746.1\|495371_495662_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225225
NC_002937.3\|WP_014524237.1\|489895_490600_+\|CerR-family-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378136
NC_002937.3\|WP_010937737.1\|484787_485864_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|225800
NC_002937.3\|WP_010937738.1\|485876_486269_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|376317
NC_002937.3\|WP_014524240.1\|509425_514033_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_002937.3\|WP_010937748.1\|497612_499340_-\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NC_002937.3\|WP_010937739.1\|486304_486778_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	unknown	unknown	gnl\|CDD\|225799
NC_002937.3\|WP_010937747.1\|496130_497462_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NC_002937.3\|WP_010937740.1\|486790_487639_-\|NADH-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl\|CDD\|376297
NC_002937.3\|WP_010937736.1\|484367_484769_-\|ech-hydrogenase-subunit-EchF	unknown	unknown	gnl\|CDD\|224066
NC_002937.3\|WP_010937751.1\|501937_504160_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|377039
NC_002937.3\|WP_164562226.1\|490874_492215_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_002937.3\|WP_010937749.1\|499786_500983_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787

Protein	Function_ID	Function_description	E-value
NC_002937.3\|WP_010937752.1\|504168_505893_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	1.50528e-73
NC_002937.3\|WP_010937741.1\|487638_489585_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|223941	COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism].	8.82537e-84
NC_002937.3\|WP_010937753.1\|506041_507589_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NC_002937.3\|WP_010937755.1\|508292_509438_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_002937.3\|WP_010937745.1\|492211_495337_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NC_002937.3\|WP_010937754.1\|507581_507899_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	1.46229e-27
NC_002937.3\|WP_014524239.1\|501195_501951_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	5.01889e-31
NC_002937.3\|WP_010937746.1\|495371_495662_+\|hypothetical-protein	gnl\|CDD\|225225	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown].	2.77067e-13
NC_002937.3\|WP_014524237.1\|489895_490600_+\|CerR-family-C-terminal-domain-containing-protein	gnl\|CDD\|378136	pfam09209, DUF1956, Domain of unknown function (DUF1956). Members of this family are found in various prokaryotic transcriptional regulator proteins. Their exact function has not, as yet, been identified.	3.08866e-33
NC_002937.3\|WP_010937737.1\|484787_485864_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	1.01484e-126
NC_002937.3\|WP_010937738.1\|485876_486269_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|376317	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit.	2.43923e-10
NC_002937.3\|WP_014524240.1\|509425_514033_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.64605e-89
NC_002937.3\|WP_010937748.1\|497612_499340_-\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NC_002937.3\|WP_010937739.1\|486304_486778_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	1.2693e-62
NC_002937.3\|WP_010937747.1\|496130_497462_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	2.87546e-70
NC_002937.3\|WP_010937740.1\|486790_487639_-\|NADH-quinone-oxidoreductase-subunit-H	gnl\|CDD\|376297	pfam00146, NADHdh, NADH dehydrogenase.	1.43608e-36
NC_002937.3\|WP_010937736.1\|484367_484769_-\|ech-hydrogenase-subunit-EchF	gnl\|CDD\|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	1.55873e-18
NC_002937.3\|WP_010937751.1\|501937_504160_-\|CBS-domain-containing-protein	gnl\|CDD\|377039	pfam03445, DUF294, Putative nucleotidyltransferase DUF294. This domain is found associated with pfam00571. This region is uncharacterized, however it seems to be similar to pfam01909, conserving the DXD motif. This strongly suggests that members of this family are also nucleotidyltransferases (Bateman A pers. obs.).	3.54317e-35
NC_002937.3\|WP_164562226.1\|490874_492215_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.05261e-67
NC_002937.3\|WP_010937749.1\|499786_500983_-\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	7.7627e-75

>NC_002937.3|WP_010937746.1|495371_495662_+|hypothetical-protein
MFLVLVHYTKPLSDIDALRPAHMAFLDEHFAKGTFLFSGPRDPRVGGVIAATCPDEPTLRALLAEDPFARAGAATYEVIRLAVNKAAPDLARLRDC
>NC_002937.3|WP_010937745.1|492211_495337_+|efflux-RND-transporter-permease-subunit
MNVTEFFIRRPVTTTLVMLGLLFFGVMGYRQLPVSDLPNVDFPTIQVRAQLPGADPETMASSVAAPLERQFATIAGIDSMSSTNTQGNTRITIQFNLSRDIDAAAQDVQAAISTAQRKLPSDLTTPPSYQKVNPADQPILFLALTSPTLPLSKVNEYAETRIGQTISMVSGVAQVNVYGAKKYAVRVQVDPRRLKALGLGIDEVSAAVDKANSNLPTGTLQGEHTASIIKASGQLYDAAAYRPVVVAYRNGAPVRLEELGRVVDSVEQDRILNWFNDERGIVLAVQRQPGTNTVEVVESIKRLLPEFERQLPAAVKLNILFDRSESIKASVAEVKFTLVLTVCLVVLVIFLFLRSLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALTLAVGFVVDDAIVMLENIVRHMEMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMGGIVGRLFHEFAVVITVAILLSGFVSLSLTPMLCALFLKPHVGQRRHGRVYNALETFFETLHRGYERSLRFTMRHHRMTFGLSMVVLGVTVWLFAAMPKGFLPSEDTGQISGFTEADQSVSFGQMVKLQKTLHPIIAADPGVDSFSSTVGAGGPNVGGNSGRFFIRLKDFDERDEHVDTIINRLRAKLSGFPGINVFLVNPPSINVGGRASKSLYQYTLQGPDTAELYKAGTELEAALRELPQLRDVTSDLQIRNPEVRVDIDRDKAAALGLSVHQVEDALQSAYGTRQVSTILAPDNDYQVILELLPEYQRDASSMSLLNVRSASGRLVPLDTIATLRPSVGPLAVNHSGQFPSVTLSFNLRPGVSLSEAVQAVEGIAGQYLPPTATGTFQGTAQAFQSSMQGMAMLLFMAVVVIYIVLGVLYESFIHPLTILSGLPSAGLGALVTLFIFGIDLNLYAFVGIIMLIGIVKKNAIMMIDFAVEAERKNGASPYEAILQGCLIRFRPIMMTTMAALMGTLPIAVGWGPGAEARQPLGLAVVGGLLVSQLLTLYITPVYYTYLDALSRRIKRRMGRVAQDVEAVASGGDGA
>NC_002937.3|WP_164562226.1|490874_492215_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MASVRRVACTLLACCLVVAGACSRDEGKAKGARAKGPAPVTAAVAARQDIPVRLKAVGNVEASATVQVRSRITGELTGIHFREGDDVRKGQKLFTIDPRPMEAALREARARQERTRAQLTKAEDDLRRFASLVEGGFVSREQYEQIRTTAEGLRASLREAEAAVESAALQRDYCIITAPADARAGAVGAHIGNMIKANADDWLVTLDTVEPVYVSFSIPEVHLPAVLALRQSGTGRVLARPDGGDEVEGRLDFVDNSVDTATGTIRLRATFDNRTRSLWPGRFVDVRLTLATHKDAVVVPSRAVQAGVDGPYAYVVADGRAELRNLAVGVQADTMTEVLQGIAPGEKVVVEGLMRLTPGAEVVIRAADAGRNATASPADTTATPGGPSGDTPPGGASKSAGAAAEKGAADTATDSKQAGGNAAQTSVPTQGPTQGPTGTKAAEARQ
>NC_002937.3|WP_014524237.1|489895_490600_+|CerR-family-C-terminal-domain-containing-protein
MQGGSRERLLEAAGETFAEKGFHRASLREICTRAGMNVAMVKYHFGDKMGLYREVLHATFDAAAKARIQRTLVACPRQRLYDFIHDQLLRVRGGRRPPWYNRLMARELASPSPALDELVARGILPVSRELRGIVMDLLGEGATDREITLHSLSVVGQSLHHHHARAIIERLYPDLTYTQRDIAALAEHIVRFSLDALDAARKRITERAHGAQDNVAERGVLHSGRDVAHPSDAG
>NC_002937.3|WP_010937741.1|487638_489585_-|NADH-quinone-oxidoreductase-subunit-L
MLDTLVFGCVAFPLLAALAVYFVRGEAARRLIVPGAVAVTALSALGMAGSGPIMFAPKSFLGIGLDGLIAFLDFALLFYILYLGTKMRHLLIMGMTVLQIVGLIYLEFFLMDHGATVPGFYVDSLSLTMVLIISFVGGLICVYGLGYMKEHEEHLHLPQTKQPRFFFFVVLFLGAMNGLVLSNNLAWMYFFWEITTLCSFMLIGHDGTDEAKTNATRALWMNMVGGVAFVFALLFLQKGMGTLSVQDILARAVEPEMRTTAVLLPMAMLCLAGFTKSAQLPFQSWLCGAMVAPTPVSALLHSSTMVKAGVYLILRMAPGYAGTALSTGVALFGAFTFIVTSALAAGQSNGKKILAYSTIANLGLIVACAGINTAASVAAAMMLIIFHAISKGLLFLCVGAIEQKIGSRNIEDMRNLFERMPRTAVITVIGIVTMMLPPFGMLIAKWMAIESAAGAMSAMPLLVIMIALGSALTVLFWARWAGIMLGSSRPGFGPMQEEQDITIRLPLVSLVGGALVLSLLAPFVYTGLVEPAIAMYAKASAYGVSIGTIGNTMGAFAVYPLYLLLGAGFYYAWRAARNTPDSAASLPYMGGSQMTQDGVVGFNGPMNQFVPNAAGNYYLEKLFGEAQLTKPGNVVAIVLLILMIGGML
>NC_002937.3|WP_010937740.1|486790_487639_-|NADH-quinone-oxidoreductase-subunit-H
MFKLILALIGLAATPVLGGLIAGLDRRITARLQSRFGPPILQPFYDVLKLLGKAPMVVNSWQVLCAYIYVVSSALAVFLFFMQGDLLLLFFVMTVGAVFQVVGALSVNSPYSQVGAQRELIQMLAYEPLIILVFVGISMATGSFMISDVYALEKPLLTQMPFLFIALGYALTIKLRKSPFDISACHHAHQEIVRGVLTEYSGPHLALLEIGHWFDVVLILGLCTLFWHTSLTGMLLLLAVTYFIEVLIDNITARMTWQWMLKGALGVGLVLSMFNILWLYVS
>NC_002937.3|WP_010937739.1|486304_486778_-|NADH-quinone-oxidoreductase-subunit-B-family-protein
MSLIKDWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPDPKAVIAIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGCPAKPEAIIDGVVTALEVVKAKLGLAEMPKVTVIE
>NC_002937.3|WP_010937738.1|485876_486269_-|NADH-quinone-oxidoreductase-subunit-C
MPNHTEILNAKPIAIDAIVGEAKALFEQDYRLVTYSVVDLGDGNVDIIYHFDKDLEFVHYRLTTPKDQPIPSLTPVYFAALLIENEARDQFGLTFDGLVLDFNRTLYLDDEITGSMSAPFCKISTIQKKA
>NC_002937.3|WP_010937737.1|484787_485864_-|nickel-dependent-hydrogenase-large-subunit
MSRTIIPFGPQHPVLPEPLHLKLVVEDETVVEAIPALGYVHRGLETLASIRDYNQMVYVVERVCGICSCIHAMCYCQSLECMMNVEVPRRAKVLRTIWSELHRIHSHLLWLGLFADGFGFESLFMQFWKVRERVMDINEATAGNRVVISTNIVGGVRRDLSPEHQKWILDEMNHLEREIRALMTTILDDYTVCKRTKGVGVLTAQQAIQLGAVGPMLRGSGVAQDARQLQYAAFDELDFEPIAVPDGDSWARCKVRFLEVLQSVDLVRQAISKLPDTELSVKVPGKPEGEVVARVEQPRGELMYYVKGNGSKHLERVRIRTPTFANIPPLLAIMGGLQLADVPVAVLSIDPCISCTER
>NC_002937.3|WP_010937736.1|484367_484769_-|ech-hydrogenase-subunit-EchF
MYMLSNVLKNLSRKYATRLYPFQTRPAFEGFRGRLVNKIEDCIFCKSCQIKCPSQCITVDPKAGTWDCDPFACVYCSVCVDACPTQCLSMVNVHRAPAPEKFVVQLQGTPRRSKKAEKAEAPAAPQAAETASE
>NC_002937.3|WP_010937747.1|496130_497462_+|serine-dehydratase-subunit-alpha-family-protein
MDLALFFRNEVKPALGCTEPGAVAYAASIAARHCPGEPLSVALSLSLSMFKNGRDVGIPGTGGLRGNRLAAVLGVLAGDADKGLMALEHIDMAVVERAQTLLDAGMVTEEVVDGVPGVYAAVTLRCAGHEVTVTVAGRHDRVASIVVDGEVVGGEGMERAPEADGTLHGGASCEPSASFTKPPLPAYLEELRECDFAQLWDMAAGIDATLEQELLRGAAMNMAVARMGLESGWGLGVGHTLAAHAEAADLHARIRFMAGAAADVRMAGAPQPVMSSAGSGNHGITATVPVAVAAEGLGVSPRVQAEALALSHLVTGYLKAHTGRLTPICGCSVAAGAGAAAGIVKVLGGNAVQAERAVASLMASLMGMLCDGAKGSCGLKVATAAGEAYAAALLGMDDRGVQRPEGVVNPDIATTARALARLSREGFAAADAVMVELLGGGKH
>NC_002937.3|WP_010937748.1|497612_499340_-|adenine-deaminase
MTYRPLLNDLVDMAAGRAPVDLVVRNARIVDVFSQRIVEAPLAIGGGRFLGFFEAEAHATLDAEGRYLLPGLIDGHVHIESSLVSPAQFARLVLARGTTAVIADPHEIANVCGLAGLRYMLDATRDLPLDVRLALPSCVPATPFENAGAVLDAAALATLMDDPRVAGLGEMMNFPGVLAGDADVLDKIALALDRGKTVDGHSPGLAGRDLATYAAARIATDHECTTVDEMHERIALGMYVLLREGSAARDMARLAPGITPGNARRCVFCTDDRQPADILRDGHIDNHLRIAVSHGVDPVTAVTIATLNAAECFGLRDRGAVAPGRVADFVLVDDLTGFAVRKVYAAGRLVARDGAVVVDLPDHADPAVRDTVNIRPLDDTAFRLPLPTGLARVIGLQPHSLLTDALERDVPRDASGCFTPGDGLVKLAVVERHKATGNVGVGIIEGYGLRGGAVATTVAHDSHNIVVAGDNDADMLVAVRELERTGGGITLCAGGRVLASLPLPVAGLMSDRPATEVSATFAQMLSIAHETLHISRDIEPFMTLSFLTLPVIPALKLTDRGLFDVRTFSFTTVGV
>NC_002937.3|WP_010937749.1|499786_500983_-|PhoH-family-protein
MASKNFVLDTNVLIENPRCIAALRNGEENRIHVPWTVLAELDGLQRDPRIGHVVGQAINALVGDEAVTFLPPLADDVAPSPGTIGDDRILGEIASSALESPILITNDRILQLKARVRGIPVEGYRDSVPFQSESQRYTGFVMDGEDPVPNCFRWENGQPVFHGPDGPRAVTWQHEVWKVAPRSVHQNLAFELMLHPGIDIVSIQSEAGYGKTFLALAAALHLVFERKDTPYRKIYLVKPVVEIGARMGFLPGDIEEKMHPYIRYVQDLLLKLHDLRPANRVFQSVEAGNMKLNPKRFEIQPIAYVRGMNLENAVVIIDEMQNLSRNEARALLTRMGEGVKCFCLGDTRQVDNQYLNESNNGLNWVVKKLKGFRNYAHIVLKGERSRGPITDIVLRSRL
>NC_002937.3|WP_014524239.1|501195_501951_-|3'-5'-exonuclease
MTRPEGTMHKARRVASRLLDGLTRLPLLHTPWSGEAERLRQPVHAATFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPHLPPEEDAIAVHGLLPDETATHDDPAESLAAFRTFCGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLDVRGLHLALRHRLPARAAALATKDADLYAVARVFDIDVADAHDATGDAWLTALVLQRLLVHGDCGHMTLGDLFHLAATGLHELNGATAMTF
>NC_002937.3|WP_010937751.1|501937_504160_-|CBS-domain-containing-protein
MIPEDIIGFLRGIAPFSDCPSGALRRVAATAEVLFVPRGGRLPAAPDDIGTHLHLIRKGMVQGPTRPGWPGTVLAPGAWLDDATGATDTTGTAPCTALTDVLCILLERNAVADALATTPGLVALLAPRCSAALRDRAAAEMRRTTLLARHEADTWHHTTLATLTTRPAPCVAPGDAIGEAARAMVDSGGSAVLVVEGGCPCGIVTVRDLTARVLARGGDSAQPVGGIMSSPVFTLPPETPALDALLAMTARGIHHVAVVPETLAHGEAPHAMLHPDARCAAQEGDDGDRERGGGDGHTGVDRFDGQGRDSTHHRESPHDSRADDTPPCLLSSDDLLSLRGTSPAALFAALREAKGLSDLVGVATRVDALAFDLLCEGAGPEALHTVTARLHDRLALRLIHMAEETLGPPPVPYAFMTFGPAAREEALLRPVQRTGIVFMPPPDEASPETGMRAARYCRSVATFVTDGLAALGFARDPQGRMAPALTLPLHRWMALCANGEATNEAEGEASDAAGVNGSAPSISLARAGRGARESATASSPPPGLSASGMGSPPLLAPRIPTADLCDARTLHGAESLTSTVRDAARHAVCHAAHPAIRHTPTADAMTRGQALSHPDPHAMLQALVDAVRLLAVRLGVDAVGTRSRLRLAEGQAKPDTASVYPEARCALDVLLLITAHDAARGGPAPEVPTDMPSAPRSPLEALALRRAEAAVARFIHHVNGRDTVSPRPPRTRAGQDHDAP
>NC_002937.3|WP_010937752.1|504168_505893_-|CBS-domain-containing-protein
MTKEPRPAAPPTSPGRRDPGGADTSPPSCLTPLSSLVLHPPLTLDRETSLGEAAARMVEAQVSAVLVGEATRPEGIITERDITRLVAEHRGMAHARPLGRVMRGGVVTIGEGSTTGEAVLRMAEHGIRHLLVVSGEGTPRGILEERDLLSGDTASPFAVASAIDTSTDATALGMAHETLHRLIRRYTSEGIAAVRLGRIVAGLRDRLVTRAAHLALQTMPTPPPSPFAVGVLGSHARREQFFATDQDVALVLSDASGDIPPDAVAAWFARFGEALAQMLVHAGLPPCPHGIMPSSPAWRRTMRSWRTVVDGACRTPDAPAVVTLSILADLRGLNDGFDLCPRLTDHLCHRLATTSLPLRLMGREAVRHAPKLGMFNRLPVIRDGKDGEYIDLKRCGLFTLMQGARALALERAGASVSGNASHNDAAGRGITSPSDTASRLAALRQCGIPGGELGDDIAHAWDVLLGLRLRGQVAHEAHAQPVDRQQKGPSWATEAMMTDEKALHDATGTTSLVMAAAPSSGGTSPAKATKGGGSALLDVGALAPLEREGLRRCLIVVDTFASWLEHRFGLHLIG
>NC_002937.3|WP_010937753.1|506041_507589_-|cation/acetate-symporter-ActP
MPEFTSTLGQPNAVSILFFFAFVAFTLAITWFAARRSRSASEFYAAGRSVTGLQNGLALAGDYMSAASFLGIAGLVSLKGYDGLIYSIGFLVGWPLMMFLIAEPLRNLGRYTFADVVAYRLRQKPIRIAAACGSLMTVCFYLIAQMVGSGALVQLMFGIRYEYAVVAVGFIMMAYVLFGGMLATTWVQITKAVLLLGGATAMVVMVLAQFDYSPTRLFVTAAAKHGEAMLAPGGLVSNPWDAISLGMALMFGTAGLPHILMRFYTVPDARAARKSVFYATGLISYFYVLTFIIGFGAMMLVGPDAIRMFDKGGNMAAPLLAEVTGGTMFLGFIAAVAFATILAVVAGLTLAGATTFSHDLYANVFKGGQSNEADEVRVAKRATIALGVIAMLLGIAFKGQNVAFMVGLAFAIAASANLPALLLSIMWRGCSTTGAVWAIVTGGVLAVGLIIVSPTVWTDVFHLGTAPFPLKNPALLSMPAAFMAGIAGSLLRPDSEESARFDAQKIRNYLGVGAE
>NC_002937.3|WP_010937754.1|507581_507899_-|DUF485-domain-containing-protein
MSGPTTHKAPDERHFDLFVRRSRTVSMSMTALMLVIYFGFIMLLAFGRDLLTARLESGLTVGIPLGIGIIISASLLTGIYVWWANTKYDSDVRTIVESMKGDDHA
>NC_002937.3|WP_010937755.1|508292_509438_+|GDP-mannose-4,6-dehydratase
MKRALITGITGQDGAYLAEFLLAKGYEVHGIKRRASLFNTDRIDHLYQDPHEKRRRFILHYGDMTDASNLIRIVQEVQPDEVYNLAAQSHVKVSFELPEYTANVDALGPLRLLEAIRILGLEKSTRFYQASTSELFGLVQEVPQTERTPFYPRSPYACAKLYAYWIAVNYREAYGMYACNGILFNHESPVRGETFVTRKITRALARTVLGLTNGLHLGNLNALRDWGHARDYVEMQWLMLQQDKPEDFVIATGHQYSVRDFVATAAGELGLALEWHGEGVDEKGVVTSVDAKALERLTGAAGASCPVKPGDVLVQVDPRYFRPTEVETLLGDPTRAHERLGWKPRTTFADMVAEMVREDVNLARRDAVCKVAGFRAFSYNE
>NC_002937.3|WP_014524240.1|509425_514033_-|response-regulator
MAAPRLDIPPTAPSGTLPEENAVPRQVDSHRAAKGRAGHHPTTHDAVHLPLVVGIGASAGGLEALEGLFRHMPTTTGAAFVVIQHLSPDFPSFMDELLARQTVMTIVVVQDGMCPAPDHIYLLPPGKEMEITLDGFILRDKSSYDNRPSMPINTFFASLAAWYGENAAGVVLSGTGTDGASGLEAISAAGGLVLVQLPESAAFDGMPKAAAAACRAAVLATPDEMPDILAAFISGSPLPFEHPGLPADPASGGPAPDALQTIFTLLQRHGGLDFRDYKPATIARRIMRRIRLEQHADIEGYARHLRDDPQAVQTLFRDLLIGVTTFFRDETAFDTLAATVIPELFRKQGDRGEIRLWVAGCASGEEAYSLGMLLLEAAPQFDFTGRISIFATDVHRHSLDRASAGVYTKDSLQALSPRRLQRFFIPEGDETYRVAPELRSLVLFTQHNILADPPFTRVDLVSCRNLLIYFGVDAQERAIARLHMALRPGGVLFMGASETTGRLHPIFEPLDPRLRIFTKRPDTLGMTATHLVHPAVIDAHRLATSSPQPSERQLLRDYDALLQRFAPDGMLVDDRFAVLHFFGNGASYLTQHTGRTDRPITDMVEGDLRLALSSALQRASTTGETARFKSIRVPGNGGDRLVDVEVMPIGNKPSDGKHYHVALQSSHPVLIRPLVEPAATGHGTGLLASRVAELEAELAETRSSLRDSIEQVHVTNEELQATNEELLSANEELQATNEELHSINEELYTVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPLQQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGLSQEEIKADPHALVALFGPDVVPHILAGISATDGEGTPVDVEIPLHCTGGTKWVHVQATSTPARGGGTEWYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFALQQAFEMNYRLKRHDGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNGALGMLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIPVGKTRRPQGRKVKETEDEGDRHALYLLVAEDDAINRLTLTRMLEQLGHRAHAVEDGSQALQALAEQHFDAVFLDIQMPVLDGMATLQAIRTGQVAGLPPTIPVVAVTAHAMQGDRERFMAKGADAYVQKPYDFTALEKALATLGRRVRPEGRTREDYSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

176334 : 271940

Shigella_phage(11.54%)

holin,capsid,portal,integrase,terminase,tail,protease,head,plate,tRNA

attL 266720:266736|attR 279707:279723

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010937452.1\|176334_177009_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_010937453.1\|177037_178027_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_010937454.1\|178038_178815_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_010937455.1\|179040_179643_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	A0A0K0KVL9	Prochlorococcus_phage	3.8e-21	40.2
WP_010937456.1\|180028_180436_-	response regulator	NA	NA	NA	NA
WP_010937457.1\|180579_181389_-	hypothetical protein	NA	NA	NA	NA
WP_010937458.1\|181385_181646_-	lipoprotein	NA	NA	NA	NA
WP_010937459.1\|181718_182330_-	DUF4881 domain-containing protein	NA	NA	NA	NA
WP_010937460.1\|182352_183405_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010937461.1\|183426_183723_-	hypothetical protein	NA	NA	NA	NA
WP_010937462.1\|184042_186916_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_010937463.1\|186985_189547_+	phosphoenolpyruvate synthase	NA	NA	NA	NA
WP_010937464.1\|190003_190387_-	hypothetical protein	NA	NA	NA	NA
WP_010937466.1\|190854_192243_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_010937467.1\|192239_194399_+	ATP-dependent helicase	A7KV33	Bacillus_phage	5.7e-75	32.0
WP_010937468.1\|194395_195367_+	thiamine-phosphate kinase	NA	NA	NA	NA
WP_010937469.1\|195387_196386_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_010937470.1\|196599_197121_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010937471.1\|197146_198142_-	KpsF/GutQ family sugar-phosphate isomerase	E5E465	Acinetobacter_phage	6.3e-21	33.2
WP_010937472.1\|198444_199833_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.2e-46	29.4
WP_010937473.1\|199860_203094_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_010937474.1\|203532_204093_+	lipoprotein	NA	NA	NA	NA
WP_014524196.1\|204153_205065_+	cation transporter	NA	NA	NA	NA
WP_010937476.1\|205349_206363_-	ATP-binding cassette domain-containing protein	M1IB70	Acanthocystis_turfacea_Chlorella_virus	3.4e-06	21.4
WP_010937477.1\|206373_207360_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-14	29.3
WP_010937478.1\|207362_208283_-	ABC transporter permease	NA	NA	NA	NA
WP_010937479.1\|208284_209262_-	ABC transporter permease	NA	NA	NA	NA
WP_010937480.1\|209431_210994_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010937481.1\|211426_213496_+	bacteriohemerythrin	NA	NA	NA	NA
WP_010937482.1\|213724_214906_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_164561858.1\|215107_215257_-	hypothetical protein	NA	NA	NA	NA
WP_010937483.1\|215483_216485_-	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	2.8e-24	39.1
WP_010937484.1\|216494_218696_-	thiosulfate reductase	NA	NA	NA	NA
WP_010937486.1\|219257_220889_-	trehalose-binding protein	NA	NA	NA	NA
WP_010937487.1\|221144_222044_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA
WP_010937488.1\|222193_223003_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010937489.1\|223207_224605_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_010937490.1\|224591_225353_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.0e-22	37.6
WP_010937491.1\|225349_226051_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_010937492.1\|226415_227339_-	SPASM domain-containing protein	NA	NA	NA	NA
WP_010937493.1\|227506_229276_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_010937496.1\|230020_230800_+	DUF169 domain-containing protein	NA	NA	NA	NA
WP_014524198.1\|231221_232349_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_010937499.1\|233751_235437_+	primase	K4I341	Streptomyces_virus	4.2e-41	30.7
WP_010937501.1\|235703_237263_+	primase	NA	NA	NA	NA
WP_010937502.1\|237389_238748_+	DNA modification methylase	A0A2H4JGF1	uncultured_Caudovirales_phage	3.9e-82	40.8
WP_010937503.1\|238740_239472_+	hypothetical protein	NA	NA	NA	NA
WP_164928111.1\|239431_241447_+\|terminase	phage terminase large subunit family protein	A0A2K9V301	Faecalibacterium_phage	2.9e-65	32.9
WP_010937505.1\|241443_241662_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164928140.1\|242310_242586_+	hypothetical protein	NA	NA	NA	NA
WP_010937507.1\|242589_244290_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	1.5e-33	27.3
WP_010937508.1\|244273_245593_+	S49 family peptidase	G8DCP1	Silicibacter_phage	3.0e-26	32.8
WP_010937509.1\|245602_245986_+\|head	head decoration protein	NA	NA	NA	NA
WP_010937510.1\|245997_247002_+\|capsid	major capsid protein	G8GWE7	Rhodobacter_phage	1.5e-06	42.6
WP_010937511.1\|247010_247331_+	hypothetical protein	NA	NA	NA	NA
WP_010937512.1\|247333_247822_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_164928113.1\|247821_248391_+	hypothetical protein	K4PXD6	Edwardsiella_phage	1.3e-10	33.7
WP_010937514.1\|248408_248819_+	lipoprotein	NA	NA	NA	NA
WP_010937515.1\|248811_248979_+	peptidase M16	NA	NA	NA	NA
WP_010937516.1\|248981_249575_+	hypothetical protein	NA	NA	NA	NA
WP_010937517.1\|249571_249898_+	hypothetical protein	NA	NA	NA	NA
WP_010937518.1\|249894_250452_+	hypothetical protein	NA	NA	NA	NA
WP_010937519.1\|250435_250627_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_010937520.1\|250630_252094_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0C4UQS0	Shigella_phage	7.2e-106	43.7
WP_010937521.1\|252143_252509_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_010937522.1\|252508_252769_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010937523.1\|252968_254459_+	hypothetical protein	R9U4C6	Rhizobium_phage	4.8e-73	47.7
WP_010937524.1\|254467_255667_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	2.4e-27	29.1
WP_010937525.1\|255789_256923_+\|tail	tail protein	B5TK72	Pseudomonas_phage	2.1e-52	34.8
WP_010937526.1\|256924_257563_+\|plate	phage baseplate assembly protein	A0A0C4UQZ3	Shigella_phage	7.1e-26	47.0
WP_010937527.1\|257564_258041_+	phage GP46 family protein	A0A2P9JZK5	Alteromonadaceae_phage	3.8e-24	53.2
WP_010937528.1\|258049_259111_+\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	9.6e-68	42.6
WP_010937529.1\|259119_259746_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	3.7e-35	45.1
WP_010937531.1\|260764_261208_+\|tail	tail assembly protein	NA	NA	NA	NA
WP_010937532.1\|261219_261549_+	hypothetical protein	NA	NA	NA	NA
WP_010937533.1\|261648_261831_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010937534.1\|261874_262270_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	5.8e-10	31.2
WP_164928115.1\|262360_262606_-	hypothetical protein	NA	NA	NA	NA
WP_164928116.1\|262656_263637_-	hypothetical protein	NA	NA	NA	NA
WP_010937537.1\|263798_264329_-	YfbU family protein	NA	NA	NA	NA
WP_164928117.1\|264413_265106_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164928118.1\|265192_265480_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_164928119.1\|265592_265769_+	hypothetical protein	NA	NA	NA	NA
WP_010937540.1\|265801_266266_+	transcriptional regulator	NA	NA	NA	NA
WP_164928120.1\|266560_266812_+	hypothetical protein	NA	NA	NA	NA
266720:266736	attL	NA	NA	NA	NA
WP_164928121.1\|266954_267194_+	hypothetical protein	NA	NA	NA	NA
WP_010937544.1\|267981_268305_+	hypothetical protein	NA	NA	NA	NA
WP_010937545.1\|268307_268871_+	hypothetical protein	NA	NA	NA	NA
WP_164928122.1\|268860_269286_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010937546.1\|269282_270425_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	7.0e-08	29.9
WP_010937547.1\|270665_271940_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.9e-96	44.4
279707:279723	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1182377 : 1214345

Bacillus_phage(20.0%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010938378.1\|1182377_1183751_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_014524310.1\|1183925_1184612_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_010938380.1\|1184608_1186228_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_014524311.1\|1186347_1186953_+	3'-5' exonuclease domain-containing protein 2	NA	NA	NA	NA
WP_010938382.1\|1187126_1187816_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.5e-40	40.4
WP_010938383.1\|1187843_1188611_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.5e-14	31.7
WP_010938384.1\|1188619_1189285_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_010938385.1\|1189442_1190192_+	GAK system XXXCH domain-containing protein	NA	NA	NA	NA
WP_010938388.1\|1191778_1194418_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-80	37.2
WP_010938389.1\|1194496_1195570_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.1e-107	60.6
WP_010938390.1\|1195858_1196965_+	DUF814 domain-containing protein	NA	NA	NA	NA
WP_010938391.1\|1197182_1198544_+	sodium-dependent transporter	NA	NA	NA	NA
WP_010938392.1\|1198733_1199264_-	HAD family hydrolase	NA	NA	NA	NA
WP_010938393.1\|1199396_1200779_-	argininosuccinate lyase	NA	NA	NA	NA
WP_010938394.1\|1200782_1201973_-	argininosuccinate synthase	NA	NA	NA	NA
WP_010938395.1\|1202024_1202927_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_014524313.1\|1203074_1203818_+	UPF0280 family protein	NA	NA	NA	NA
WP_010938397.1\|1204237_1204981_-	DNA methyltransferase	A0A2P1CGF5	Mycobacterium_phage	4.8e-58	48.9
WP_014524314.1\|1204958_1205153_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	2.4e-09	65.1
WP_010938398.1\|1205410_1205857_-\|tail	tail assembly protein	NA	NA	NA	NA
WP_010938399.1\|1205870_1207388_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	4.2e-16	31.1
WP_010938400.1\|1207389_1208046_-	hypothetical protein	NA	NA	NA	NA
WP_014524316.1\|1208200_1209382_-\|plate	baseplate J/gp47 family protein	H7BVM7	unidentified_phage	4.5e-26	34.3
WP_010938402.1\|1209359_1209794_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_010938403.1\|1209790_1210522_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_010938404.1\|1210508_1211309_-	hypothetical protein	NA	NA	NA	NA
WP_010938405.1\|1211454_1212006_-	hypothetical protein	A0A1B1IUE1	uncultured_Mediterranean_phage	3.2e-06	27.9
WP_010938406.1\|1212002_1214345_-\|tail	phage tail tape measure protein	A2I2Y1	Vibrio_virus	8.9e-74	52.0

DBSCAN-SWA_3

1220431 : 1245391

Pseudomonas_phage(28.57%)

head,holin,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010938415.1\|1220431_1221427_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_010938416.1\|1221435_1221783_-\|head	head decoration protein	NA	NA	NA	NA
WP_010938417.1\|1221798_1222749_-	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-21	41.2
WP_010938418.1\|1222938_1224240_-\|capsid	minor capsid protein	A0A2K9VGX3	Faecalibacterium_phage	3.1e-36	41.6
WP_010938419.1\|1224239_1225832_-	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	2.3e-25	28.1
WP_010938420.1\|1225916_1226537_-	OB-fold putative lipoprotein	NA	NA	NA	NA
WP_010938421.1\|1226596_1228081_-	hypothetical protein	A4JWJ4	Burkholderia_virus	6.8e-128	51.2
WP_014524317.1\|1228131_1228728_-	hypothetical protein	NA	NA	NA	NA
WP_010938423.1\|1228739_1228982_-	hypothetical protein	NA	NA	NA	NA
WP_010938424.1\|1228978_1229452_-	hypothetical protein	NA	NA	NA	NA
WP_010938425.1\|1229448_1229754_-	lipoprotein	NA	NA	NA	NA
WP_010938426.1\|1229707_1230121_-	hypothetical protein	NA	NA	NA	NA
WP_010938427.1\|1230113_1230779_-	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	7.9e-60	56.9
WP_010938428.1\|1230778_1231147_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	1.4e-18	46.4
WP_010938429.1\|1231220_1231685_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010938430.1\|1231668_1232034_-	hypothetical protein	NA	NA	NA	NA
WP_014524318.1\|1232030_1232507_-	regulatory protein GemA	A0A2H4J581	uncultured_Caudovirales_phage	1.4e-05	30.0
WP_010938432.1\|1232503_1232962_-	hypothetical protein	NA	NA	NA	NA
WP_010938433.1\|1233043_1233331_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_010938434.1\|1233344_1233584_-	hypothetical protein	NA	NA	NA	NA
WP_010938435.1\|1233601_1234114_-	host-nuclease inhibitor Gam family protein	B7SDX6	Pseudomonas_virus	7.3e-05	27.6
WP_010938436.1\|1234115_1234304_-	hypothetical protein	NA	NA	NA	NA
WP_010938437.1\|1234306_1234939_-	hypothetical protein	NA	NA	NA	NA
WP_010938438.1\|1234931_1235669_-	ATP-binding protein	A0A2H4J809	uncultured_Caudovirales_phage	3.8e-07	25.7
WP_010938439.1\|1235665_1237819_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A125RN39	Pseudomonas_phage	4.0e-20	24.9
WP_014524319.1\|1238042_1238531_-	hypothetical protein	NA	NA	NA	NA
WP_010938441.1\|1238530_1238800_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010938442.1\|1238796_1239222_-	hypothetical protein	NA	NA	NA	NA
WP_010938443.1\|1239483_1240251_+	helix-turn-helix domain-containing protein	A7Y8H7	Pseudomonas_virus	6.6e-18	32.5
WP_010938445.1\|1241836_1243216_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	4.2e-55	35.8
WP_010938446.1\|1243217_1244264_+	hypothetical protein	A0A125RNN9	Pseudomonas_phage	1.3e-16	28.2
WP_081448120.1\|1244291_1244519_-\|transposase	transposase	S5WIU1	Leptospira_phage	4.3e-10	55.6
WP_081448121.1\|1244857_1245076_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081448122.1\|1245157_1245391_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1281919 : 1298107

Staphylococcus_phage(36.36%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010938487.1\|1281919_1284490_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.9e-172	43.8
WP_010938488.1\|1284486_1284789_-	acylphosphatase	NA	NA	NA	NA
WP_010938489.1\|1284797_1285475_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.4e-24	32.4
WP_014524331.1\|1285510_1286500_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_010938491.1\|1286582_1287101_-	lipoprotein	NA	NA	NA	NA
WP_010938492.1\|1287084_1289574_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	7.4e-204	45.1
WP_010938493.1\|1289616_1290078_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_010938494.1\|1290081_1290552_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.4e-33	54.4
WP_010938495.1\|1290683_1291913_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.9e-93	47.0
WP_010938496.1\|1291944_1292607_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.2e-29	33.6
WP_010938497.1\|1292612_1293746_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	9.4e-37	32.8
WP_010938498.1\|1293748_1294279_-	cytidine/deoxycytidylate deaminase family protein	S5YN57	Mycobacterium_phage	7.2e-24	37.8
WP_010938499.1\|1294344_1295583_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.9e-97	55.3
WP_010938500.1\|1295641_1296889_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_010938501.1\|1297076_1297307_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.9e-07	38.2
WP_010938502.1\|1297363_1298107_-	3-oxoacyl-[acyl-carrier-protein] reductase	A0A0M4JSW6	Mollivirus	5.1e-07	32.5

DBSCAN-SWA_5

1530261 : 1601785

Burkholderia_phage(15.38%)

capsid,portal,integrase,terminase,tail,protease,head,tRNA

attL 1556471:1556487|attR 1596076:1596092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010938745.1\|1530261_1530750_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_011792381.1\|1530754_1532476_-	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	7.5e-38	27.6
WP_010938747.1\|1532606_1533794_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_010938748.1\|1534208_1534952_-	hypothetical protein	NA	NA	NA	NA
WP_010938749.1\|1534992_1536003_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_010938750.1\|1536246_1537176_-	NAD(P)/FAD-dependent oxidoreductase	A0A2I2L5E1	Orpheovirus	2.2e-20	28.5
WP_010938751.1\|1537476_1538223_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_010938752.1\|1538485_1539658_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_010938753.1\|1539693_1540029_-	hypothetical protein	NA	NA	NA	NA
WP_010938754.1\|1540046_1541369_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_011792376.1\|1541370_1542201_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_010938756.1\|1542187_1542865_-	bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase	NA	NA	NA	NA
WP_010938757.1\|1542987_1544223_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_010938758.1\|1544266_1545595_+	glycosyltransferase	NA	NA	NA	NA
WP_010938759.1\|1545701_1546628_-	acetylglutamate kinase	NA	NA	NA	NA
WP_010938760.1\|1546643_1547969_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	1.8e-39	28.4
WP_010938761.1\|1548080_1549529_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-20	25.4
WP_010938762.1\|1549689_1551153_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_010938763.1\|1551306_1551591_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_010938764.1\|1551663_1552092_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011792370.1\|1552106_1554554_+	ATP-binding protein	NA	NA	NA	NA
WP_014524440.1\|1554875_1555124_-	hypothetical protein	NA	NA	NA	NA
WP_010938768.1\|1555563_1556241_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
1556471:1556487	attL	NA	NA	NA	NA
WP_164928126.1\|1557265_1557733_+	hypothetical protein	NA	NA	NA	NA
WP_010938771.1\|1557758_1558655_+	hypothetical protein	NA	NA	NA	NA
WP_010938772.1\|1558663_1559671_+	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_010938773.1\|1559711_1560071_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_014524437.1\|1560129_1560630_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	9.3e-05	34.9
WP_010938776.1\|1561262_1561772_-\|tail	tail assembly protein	NA	NA	NA	NA
WP_010938777.1\|1561764_1562103_-	hypothetical protein	Q58MX5	Prochlorococcus_phage	2.4e-17	43.5
WP_014524436.1\|1562105_1562738_-	hypothetical protein	Q5DN32	Alphaproteobacteria_virus	1.1e-07	28.0
WP_164928127.1\|1562737_1565485_-\|tail	phage tail protein	A0A2H4P6Z2	Pseudomonas_phage	1.8e-41	27.9
WP_010938781.1\|1565889_1566795_-\|tail	tail protein	NA	NA	NA	NA
WP_010938783.1\|1567151_1569950_-	tape measure protein	A5A3Q5	Burkholderia_phage	4.1e-33	25.1
WP_010938784.1\|1570122_1570305_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010940652.1\|1570353_1570758_+	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	1.7e-09	49.3
WP_010938785.1\|1571177_1571561_-	hypothetical protein	NA	NA	NA	NA
WP_010938786.1\|1571569_1572733_-	hypothetical protein	NA	NA	NA	NA
WP_014524433.1\|1572744_1573131_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_010938788.1\|1573133_1573631_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_010938789.1\|1573623_1573950_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	9.9e-16	45.0
WP_010938790.1\|1573949_1574507_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_010938791.1\|1574510_1574780_-	hypothetical protein	NA	NA	NA	NA
WP_010938792.1\|1574825_1576022_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	9.5e-64	39.3
WP_010938793.1\|1576226_1576961_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	1.4e-57	58.3
WP_010938794.1\|1576953_1578213_-\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	1.3e-55	34.0
WP_010938795.1\|1578212_1579910_-\|terminase	terminase large subunit	Q8W631	Enterobacteria_phage	1.4e-161	52.3
WP_010938796.1\|1579914_1580382_-\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	1.6e-19	38.7
WP_010938797.1\|1580465_1580864_-	HNH endonuclease	A0A1V0E8A5	Vibrio_phage	5.4e-24	49.6
WP_010938798.1\|1580883_1581132_-	hypothetical protein	NA	NA	NA	NA
WP_010938799.1\|1581128_1581479_-	hypothetical protein	NA	NA	NA	NA
WP_010938800.1\|1581478_1581886_-	hypothetical protein	A0A0M4TU77	Ralstonia_phage	1.0e-33	50.7
WP_010938801.1\|1582049_1582439_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_010938802.1\|1582431_1582995_-	hypothetical protein	NA	NA	NA	NA
WP_010938804.1\|1583336_1583597_-	hypothetical protein	NA	NA	NA	NA
WP_010938805.1\|1583583_1584078_-	hypothetical protein	Q3HQZ9	Burkholderia_phage	2.6e-28	57.8
WP_014524431.1\|1584074_1584482_-	hypothetical protein	NA	NA	NA	NA
WP_041722649.1\|1585242_1585428_+	hypothetical protein	NA	NA	NA	NA
WP_010938807.1\|1585460_1586924_-	DNA cytosine methyltransferase	A0A2I7R2G4	Vibrio_phage	1.2e-73	40.0
WP_014524429.1\|1587126_1587483_-	hypothetical protein	NA	NA	NA	NA
WP_010938809.1\|1587482_1587896_-	transcriptional regulator	NA	NA	NA	NA
WP_081448130.1\|1588106_1588418_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164928128.1\|1588495_1589107_+	helix-turn-helix transcriptional regulator	A0A0R6PHY1	Moraxella_phage	1.5e-12	25.8
WP_010938812.1\|1589164_1590151_+	hypothetical protein	NA	NA	NA	NA
WP_014524426.1\|1590848_1591145_+	hypothetical protein	NA	NA	NA	NA
WP_010938815.1\|1591190_1592219_+	hypothetical protein	E5DV80	Deep-sea_thermophilic_phage	3.7e-16	29.3
WP_010938816.1\|1592221_1593118_+	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_010938817.1\|1593137_1594130_+	hypothetical protein	NA	NA	NA	NA
WP_010938818.1\|1594493_1594712_-	hypothetical protein	NA	NA	NA	NA
WP_010938819.1\|1594708_1595902_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	6.5e-97	47.1
WP_010938820.1\|1596515_1597001_-	nucleoside deaminase	S4VYZ2	Pandoravirus	9.0e-05	36.5
1596076:1596092	attR	NA	NA	NA	NA
WP_010938821.1\|1597221_1597878_-	TIGR00730 family Rossman fold protein	A0A1D8KU27	Synechococcus_phage	9.0e-16	32.5
WP_010938822.1\|1598014_1599625_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010938823.1\|1599750_1600323_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_010938824.1\|1600298_1600859_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	8.4e-31	46.6
WP_010938825.1\|1600855_1601785_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_6

1851001 : 1861875

Vibrio_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010939076.1\|1851001_1852774_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	7.3e-36	34.3
WP_010939077.1\|1852766_1854485_-	DNA primase	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	5.2e-39	29.1
WP_010939078.1\|1854517_1856833_-	Smr/MutS family protein	Q94M10	Lactobacillus_phage	6.2e-11	45.9
WP_010939079.1\|1856839_1857289_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	6.8e-23	42.2
WP_010939080.1\|1857404_1857608_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_010939082.1\|1857724_1857928_-	hypothetical protein	NA	NA	NA	NA
WP_010939083.1\|1857938_1858211_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	5.2e-18	55.1
WP_164562208.1\|1858412_1859264_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010939086.1\|1859304_1859820_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_010939087.1\|1859826_1861875_-	elongation factor G	E4ZFJ7	Streptococcus_phage	3.0e-57	27.4

DBSCAN-SWA_7

2083334 : 2112676

Burkholderia_phage(20.0%)

protease,integrase,transposase

attL 2072526:2072542|attR 2103487:2103503

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2072526:2072542	attL	NA	NA	NA	NA
WP_164928133.1\|2083334_2084039_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5NNJ1	Burkholderia_phage	3.3e-16	30.1
WP_010937781.1\|2086356_2087406_+\|transposase	IS481-like element ISDvu4 family transposase	A0A077SLK2	Escherichia_phage	5.0e-77	43.5
WP_010939290.1\|2087711_2087867_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_010939293.1\|2088754_2089138_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_150103618.1\|2089118_2090230_-\|transposase	IS3-like element ISD1 family transposase	NA	NA	NA	NA
WP_010939296.1\|2090667_2092329_-	hydroxylamine reductase	NA	NA	NA	NA
WP_010939297.1\|2092403_2093579_-	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_081448124.1\|2093575_2093824_-	diguanylate cyclase	NA	NA	NA	NA
WP_010939299.1\|2093763_2094645_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.0e-10	38.0
WP_010939300.1\|2094688_2095930_-\|transposase	ISL3-like element ISDvu5 family transposase	NA	NA	NA	NA
WP_014524354.1\|2095970_2096186_-	AAA family ATPase	NA	NA	NA	NA
WP_010939301.1\|2096175_2098245_-\|protease	BREX system Lon protease-like protein BrxL	NA	NA	NA	NA
WP_010939302.1\|2098259_2100758_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_010939303.1\|2100754_2101222_-	GxxExxY protein	NA	NA	NA	NA
WP_010939304.1\|2101221_2104698_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	A0A2R2ZGH5	Clostridioides_phage	7.6e-05	25.2
2103487:2103503	attR	NA	NA	NA	NA
WP_010939305.1\|2104702_2105242_-	hypothetical protein	NA	NA	NA	NA
WP_010939306.1\|2105238_2106303_-	ATP-binding protein	NA	NA	NA	NA
WP_014524353.1\|2106299_2109848_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_010939308.1\|2109862_2110453_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_014524351.1\|2110473_2111085_-	DUF1819 family protein	NA	NA	NA	NA
WP_150103616.1\|2111439_2112676_+\|transposase	IS3-like element ISDvu2 family transposase	Q9ZXG3	Shigella_phage	2.0e-64	48.0

DBSCAN-SWA_8

2252214 : 2269777

Rhodovulum_phage(25.0%)

holin,capsid,portal,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010939430.1\|2252214_2256255_-\|tail	tail fiber protein	A0A1B1P733	Rhodovulum_phage	3.3e-60	35.0
WP_010939431.1\|2256244_2256670_-	C40 family peptidase	A0A1B0T6D9	Thiobacimonas_phage	5.8e-24	45.0
WP_014524470.1\|2256669_2257179_-	DUF1833 family protein	M4ST87	Rhodobacter_phage	2.7e-12	29.7
WP_010939433.1\|2257175_2257541_-	hypothetical protein	A0A1B1P748	Rhodovulum_phage	1.0e-05	36.6
WP_010939434.1\|2257540_2260462_-\|tail	tail protein	G9BW49	Planktothrix_phage	2.5e-17	24.3
WP_041722685.1\|2260464_2260677_-	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_010939435.1\|2260760_2261111_-	hypothetical protein	NA	NA	NA	NA
WP_010939436.1\|2261119_2262064_-	hypothetical protein	NA	NA	NA	NA
WP_010939437.1\|2262081_2262549_-	hypothetical protein	NA	NA	NA	NA
WP_010939438.1\|2262545_2263256_-	hypothetical protein	NA	NA	NA	NA
WP_014524471.1\|2263255_2263606_-	hypothetical protein	NA	NA	NA	NA
WP_010939440.1\|2263605_2263770_-	hypothetical protein	NA	NA	NA	NA
WP_010939441.1\|2263762_2264173_-	lipoprotein	NA	NA	NA	NA
WP_014524473.1\|2264315_2264831_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_014524474.1\|2264838_2265294_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_010939444.1\|2265366_2265576_-	hypothetical protein	NA	NA	NA	NA
WP_010939445.1\|2265578_2266604_-\|capsid	major capsid protein	A0A248XCX5	Klebsiella_phage	2.5e-12	23.4
WP_010939446.1\|2266614_2266983_-\|head	head decoration protein	NA	NA	NA	NA
WP_010939447.1\|2266986_2268207_-	S49 family peptidase	A0A2I7QY56	Vibrio_phage	3.1e-09	28.6
WP_010939448.1\|2268223_2269777_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	3.4e-37	29.3

DBSCAN-SWA_9

2801324 : 2834336

uncultured_Caudovirales_phage(23.08%)

capsid,terminase,transposase,tail,protease,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014524552.1\|2801324_2803520_+\|transposase	Mu transposase C-terminal domain-containing protein	Q38013	Pseudomonas_phage	6.8e-100	38.0
WP_010939958.1\|2803528_2804314_+	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	2.3e-10	25.0
WP_010939959.1\|2804316_2804904_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014524553.1\|2804896_2805226_+	helix-turn-helix domain-containing protein	G8GWC3	Rhodobacter_phage	1.1e-14	39.5
WP_014524554.1\|2805228_2805711_+	hypothetical protein	NA	NA	NA	NA
WP_010939961.1\|2805720_2805957_+	hypothetical protein	NA	NA	NA	NA
WP_010939962.1\|2806042_2806282_+	hypothetical protein	NA	NA	NA	NA
WP_010939963.1\|2806363_2806798_+	hypothetical protein	NA	NA	NA	NA
WP_010939964.1\|2806806_2807223_+	regulatory protein GemA	A0A2H4J581	uncultured_Caudovirales_phage	9.3e-27	49.6
WP_164928143.1\|2807249_2807708_+	DNA transposition protein	A0A0M3VI83	Ralstonia_phage	2.0e-14	42.3
WP_010939966.1\|2807720_2808059_+	hypothetical protein	NA	NA	NA	NA
WP_010939967.1\|2808171_2808534_+	lipoprotein	Q6QIC8	Burkholderia_phage	8.1e-19	46.4
WP_010939968.1\|2808533_2809181_+	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	1.0e-59	56.4
WP_010939969.1\|2809173_2809593_+	hypothetical protein	NA	NA	NA	NA
WP_014524556.1\|2809546_2809840_+	hypothetical protein	NA	NA	NA	NA
WP_010939971.1\|2809843_2810125_+	hypothetical protein	NA	NA	NA	NA
WP_010939972.1\|2810111_2810327_+	hypothetical protein	NA	NA	NA	NA
WP_010939973.1\|2810328_2810847_+	DUF1804 family protein	A0A0M3VI86	Ralstonia_phage	1.5e-37	47.3
WP_010939974.1\|2810843_2812520_+\|terminase	phage terminase large subunit	A0SMN6	Pseudomonas_virus	3.5e-189	60.3
WP_010939975.1\|2812506_2814225_+	DUF935 domain-containing protein	A0A1C6ZDK1	Pseudomonas_phage	1.0e-106	43.0
WP_010939976.1\|2814227_2815478_+\|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	5.1e-68	50.2
WP_010939977.1\|2815642_2816131_+	phage virion morphogenesis protein	F8TVC6	EBPR_siphovirus	3.5e-17	41.8
WP_010940676.1\|2816265_2816802_+	hypothetical protein	NA	NA	NA	NA
WP_014524557.1\|2816837_2818019_+\|protease	phage protease	A0A2D1GNS3	Pseudomonas_phage	4.7e-55	42.5
WP_010939979.1\|2818019_2818949_+\|head	Mu-like prophage major head subunit gpT family protein	A0A1C6ZDN1	Pseudomonas_phage	2.8e-95	55.8
WP_010939980.1\|2818960_2819290_+	hypothetical protein	NA	NA	NA	NA
WP_010939981.1\|2819289_2819721_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_010939982.1\|2819717_2820347_+	DUF1834 family protein	NA	NA	NA	NA
WP_010939983.1\|2820349_2820535_+	DUF2635 domain-containing protein	B7SDP7	Haemophilus_phage	6.6e-09	52.7
WP_010939984.1\|2820521_2821943_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4JFT7	uncultured_Caudovirales_phage	1.0e-96	46.2
WP_010939985.1\|2822021_2822849_+	hypothetical protein	NA	NA	NA	NA
WP_010939987.1\|2822984_2823359_+	hypothetical protein	A0A2H4J9F8	uncultured_Caudovirales_phage	1.1e-23	46.1
WP_010939988.1\|2823556_2823886_+	hypothetical protein	NA	NA	NA	NA
WP_010939989.1\|2824044_2825985_+\|tail	phage tail tape measure protein	B5TAA4	Burkholderia_phage	9.3e-69	42.1
WP_010939990.1\|2826004_2827345_+	DNA circularization N-terminal domain-containing protein	A0A2H4JGT4	uncultured_Caudovirales_phage	4.5e-38	30.3
WP_010939991.1\|2827364_2828489_+\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	5.9e-76	42.4
WP_010939992.1\|2828485_2829112_+\|plate	phage baseplate assembly protein V	F6MIL4	Haemophilus_phage	5.5e-31	41.7
WP_010939993.1\|2829050_2829500_-	hypothetical protein	NA	NA	NA	NA
WP_010939994.1\|2829572_2829929_+	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.2e-27	58.1
WP_010939995.1\|2829938_2831000_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	6.6e-69	43.9
WP_010939996.1\|2830996_2831590_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_010939997.1\|2831673_2832564_+\|tail	tail protein	Q9MCR6	Enterobacteria_phage	1.3e-14	43.7
WP_010939998.1\|2832573_2833113_+\|tail	tail assembly protein	NA	NA	NA	NA
WP_010939999.1\|2833413_2833614_+	Com family DNA-binding transcriptional regulator	Q5ZQW8	Pseudomonas_phage	9.7e-06	48.2
WP_010940000.1\|2833586_2834336_+	DNA methyltransferase	A0A2P1CGF5	Mycobacterium_phage	1.1e-54	48.1

DBSCAN-SWA_10

2936360 : 2981296

Alteromonadaceae_phage(18.18%)

holin,capsid,portal,integrase,tail,head,plate,tRNA

attL 2936186:2936230|attR 2977658:2977702

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2936186:2936230	attL	NA	NA	NA	NA
WP_041722798.1\|2936360_2937656_+\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	1.9e-09	25.4
WP_010940095.1\|2937657_2937900_-	hypothetical protein	NA	NA	NA	NA
WP_010940096.1\|2937964_2938330_-	hypothetical protein	NA	NA	NA	NA
WP_014524576.1\|2938414_2938627_-	hypothetical protein	NA	NA	NA	NA
WP_010940097.1\|2938712_2938907_-	hypothetical protein	NA	NA	NA	NA
WP_010940098.1\|2938893_2939355_-	phage regulatory CII family protein	NA	NA	NA	NA
WP_010940099.1\|2939512_2939842_+	hypothetical protein	NA	NA	NA	NA
WP_010940100.1\|2939831_2940170_-	hypothetical protein	NA	NA	NA	NA
WP_010940101.1\|2940239_2940512_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014524577.1\|2940629_2941055_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010940103.1\|2941167_2942241_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	1.7e-56	39.3
WP_010940104.1\|2942312_2943650_+	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	4.1e-23	30.0
WP_010940105.1\|2943650_2944175_+	hypothetical protein	NA	NA	NA	NA
WP_010940106.1\|2944283_2944985_-	hypothetical protein	NA	NA	NA	NA
WP_010940107.1\|2944984_2946184_-	type II restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-87	44.5
WP_010940108.1\|2946323_2947400_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	3.2e-87	50.8
WP_010940109.1\|2947408_2947819_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	1.6e-42	60.3
WP_010940110.1\|2947835_2948699_+	hypothetical protein	NA	NA	NA	NA
WP_010940111.1\|2948706_2949135_+	HIT family protein	D7NW73	Streptomyces_phage	2.1e-21	51.5
WP_010940113.1\|2949440_2949770_-	hypothetical protein	NA	NA	NA	NA
WP_010940114.1\|2949781_2950321_-\|tail	tail assembly protein	NA	NA	NA	NA
WP_010940115.1\|2950330_2951146_-\|tail	tail protein	A0A2P1A4E8	Alteromonadaceae_phage	5.2e-13	59.0
WP_010940116.1\|2951138_2951765_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	2.2e-35	45.1
WP_010940117.1\|2951773_2952835_-\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	6.2e-67	42.3
WP_010940118.1\|2952843_2953320_-	phage GP46 family protein	A0A2P9JZK5	Alteromonadaceae_phage	1.1e-23	52.3
WP_010940119.1\|2953321_2953960_-\|plate	phage baseplate assembly protein	A0A0C4UQZ3	Shigella_phage	7.1e-26	46.6
WP_010940120.1\|2953961_2955095_-\|tail	tail protein	B5TK72	Pseudomonas_phage	2.7e-52	34.8
WP_010940121.1\|2955217_2956417_-	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	3.8e-28	28.6
WP_010940122.1\|2956425_2957916_-	hypothetical protein	R9U4C6	Rhizobium_phage	4.6e-76	49.7
WP_150103629.1\|2957996_2958104_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_010940123.1\|2958115_2958376_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010937521.1\|2958375_2958741_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_010940124.1\|2958790_2960254_-\|tail	phage tail sheath subtilisin-like domain-containing protein	C9DGP7	Escherichia_phage	3.0e-104	42.5
WP_010937519.1\|2960257_2960449_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_010940125.1\|2960432_2960990_-	hypothetical protein	NA	NA	NA	NA
WP_010937517.1\|2960986_2961313_-	hypothetical protein	NA	NA	NA	NA
WP_010937516.1\|2961309_2961903_-	hypothetical protein	NA	NA	NA	NA
WP_010937515.1\|2961905_2962073_-	peptidase M16	NA	NA	NA	NA
WP_010940127.1\|2962065_2962476_-	lipoprotein	NA	NA	NA	NA
WP_010940128.1\|2962493_2963042_-	hypothetical protein	K4PXD6	Edwardsiella_phage	1.2e-10	33.7
WP_010940129.1\|2963062_2963551_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_010940130.1\|2963553_2963901_-	hypothetical protein	NA	NA	NA	NA
WP_010937510.1\|2963909_2964914_-\|capsid	major capsid protein	G8GWE7	Rhodobacter_phage	1.5e-06	42.6
WP_010937509.1\|2964925_2965309_-\|head	head decoration protein	NA	NA	NA	NA
WP_010940131.1\|2965318_2966638_-	S49 family peptidase	G8DCP1	Silicibacter_phage	1.1e-25	32.5
WP_010940132.1\|2966621_2968322_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.2e-34	27.5
WP_010940133.1\|2968325_2968601_-	hypothetical protein	NA	NA	NA	NA
WP_010940135.1\|2969248_2969467_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010940137.1\|2971441_2972164_-	hypothetical protein	NA	NA	NA	NA
WP_010940138.1\|2972156_2973515_-	DNA modification methylase	A0A2H4JGF1	uncultured_Caudovirales_phage	2.3e-82	40.7
WP_010940139.1\|2973641_2975198_-	primase	NA	NA	NA	NA
WP_010940141.1\|2975464_2977150_-	primase	K4I341	Streptomyces_virus	4.2e-41	30.7
WP_010940142.1\|2978218_2979715_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
2977658:2977702	attR	NA	NA	NA	NA
WP_010940143.1\|2979886_2981296_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_002937.3|WP_164561555.1|1252307_1252652_-|hypothetical-protein

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Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage
NC_002937.3\|WP_164561555.1\|1252307_1252652_-\|hypothetical-protein	1252307_1252652_- Protein sequences of NC_002937.3\|WP_164561555.1\|1252307_1252652_-\|hypothetical-protein >NC_002937.3\|WP_164561555.1\|1252307_1252652_-\|hypothetical-protein MTIRPQLFCPACGTDLMAATAAVPCRVCGSPATVRAGAREELAVCSERCLVTLIKSTTEVCDHCGTRFITRERHAGEEPATAEEPSGDFCSDTCRERHIAEVRGHDTHRQHIGE	114 aa aa	NA	NA	NA	No	NA

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_005863

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_002937

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information