CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	1 crisprs	csa3	0	1	1	0
NC_003212	Listeria innocua Clip11262, complete genome	3 crisprs	DinG,cas3,WYL,casR,DEDDh,csa3,csn2,cas9	1	10	6	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003383_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003383_1

76921-76996

Orphan

Consensus_repeat	Method
TGAGAAGATCACCAATAAAACTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003383_1

>merge|NC_003383|1|76921-76996|CRISPRCasFinder
TGAGAAGATCACCAATAAAACTTCTCGAATACGATTGGTTTTTTATTTTTTCTGTGAAGATCACCAATAAAACTTC

>NC_003383|1|1|76921-76996|CRISPRCasFinder
TGAGAAGATCACCAATAAAACTTC	TCGAATACGATTGGTTTTTTATTTTTTC
TGTGAAGATCACCAATAAAACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003383.1\|WP_003759224.1\|72837_73518_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_003383.1\|WP_003759339.1\|75914_76175_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_003383.1\|WP_011011047.1\|67397_68678_+\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NC_003383.1\|WP_041918454.1\|79041_80256_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_003383.1\|WP_031659855.1\|76284_76854_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341213
NC_003383.1\|WP_003726387.1\|67065_67410_+\|hypothetical-protein	unknown	unknown	unknown
NC_003383.1\|WP_003726389.1\|69034_69367_-\|hypothetical-protein	unknown	unknown	unknown
NC_003383.1\|WP_011011048.1\|70868_72518_+\|primase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378031
NC_003383.1\|WP_026747205.1\|69359_70205_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_003383.1\|WP_003759336.1\|77057_77435_-\|hypothetical-protein	unknown	unknown	unknown
NC_003383.1\|WP_011011054.1\|80402_81557_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NC_003383.1\|WP_049781577.1\|73552_74356_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_003383.1\|WP_011011055.1\|81573_81867_+\|DUF3116-family-protein	unknown	unknown	gnl\|CDD\|371460
NC_003383.1\|WP_011011050.1\|74918_75908_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003383.1\|WP_003759224.1\|72837_73518_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.02966e-96
NC_003383.1\|WP_003759339.1\|75914_76175_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	9.51839e-06
NC_003383.1\|WP_041918454.1\|79041_80256_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_003383.1\|WP_011011048.1\|70868_72518_+\|primase-C-terminal-domain-containing-protein	gnl\|CDD\|378031	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	4.27196e-10
NC_003383.1\|WP_026747205.1\|69359_70205_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	9.79403e-45
NC_003383.1\|WP_011011054.1\|80402_81557_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	4.58988e-68
NC_003383.1\|WP_011011047.1\|67397_68678_+\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	4.13562e-135
NC_003383.1\|WP_031659855.1\|76284_76854_-\|hypothetical-protein	gnl\|CDD\|341213	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins. TenpN-like toxin component of a type III toxin-antitoxin (TA) system, which consists of a ribonuclease (RNase) toxin that processes its structured and specific cognate RNA antitoxin, which in turn then directly inhibits the toxin. TA systems have been associated with many important phenotypes, like phage resistance, maintenance of genomic islands, and formation of bacterial persister cells.	2.62765e-26
NC_003383.1\|WP_049781577.1\|73552_74356_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.05033e-60
NC_003383.1\|WP_011011055.1\|81573_81867_+\|DUF3116-family-protein	gnl\|CDD\|371460	pfam11313, DUF3116, Protein of unknown function (DUF3116). This family of proteins with unknown function appears to be restricted to Bacillales.	6.13527e-06

>NC_003383.1|WP_031659855.1|76284_76854_-|hypothetical-protein
MDKRVLQGMNDKPYKYQVVRLKKEFFQSNPHFINMLDPGNPEKQMRRTYLYLDIQKDHYHYLIPFRSHLNHRNGVATPSKDRPKAGLDYSHTLIVKDSTHIQTAFISNDQYREVKNKIRPIYTRTSRYISDFMNAYKKGIVLDLPKYQNSTLINFVGYLEKEWTKQVPLQDRKQTQKVKENNRPKKYRF
>NC_003383.1|WP_003759339.1|75914_76175_-|helix-turn-helix-transcriptional-regulator
MRLYEEPDVRIRINIKGICEKYKLTMGELSRRTDIEPSKISAYANDRRQRVQITHLERICQSLHIRDMNELFILEVLEDEQVDNKE
>NC_003383.1|WP_011011050.1|74918_75908_-|hypothetical-protein
MRTVEDILYDKQSAIFLLAELYETHEKEHEDHKEGTLITCEICRQIETCSILIRRLEQELLQKKDEIRAEEKRHAKDLLKWHYIKYPLNATNLERILHWQKMFSKRMFDELTRMGWSVEEIQRRYDIPDFFFKRWLFKKGLYAVVPLILKVRTIDDRIFIYKVFQEADLNLLLTLDDIVMKSYDRIEREDWKHVYFWHHGAYHHLEQIIVQSEFGKVGETVYHAEEQLGCKKKATDQVIFYDGFNQEAVAYFCEENEMKRLAKGNRLLINTRYGTITLFPGEYVVKEITGRFVKYSANQFSQLYEIVDTVRPMGLVSETSSYNEYTNKI
>NC_003383.1|WP_049781577.1|73552_74356_+|IS3-family-transposase
MNFATEPENQQLKKWILEIYSQAKKRFGAAKIQVVLKRDYGVSISLGRVYRLLRQLQLPKMSTVKPSYQKRKVDEAPHDSCPNHLKQAFNPPAPNQVWTTDFSYIPVGKKGFVYLCIVMNLFSRKIIAWQVAHKINTDLALQTLEVAYKQRRPSQTVMIHSDRGSQYTAKAYRRWLDEHDLLASYSKKAYPWDNAVTEAFFKYMKKEELDRRAFSSIQDVQLACFEYIESFYNRHRPHSTINMLTPEEKENFLFQQSVNDSFLCLLY
>NC_003383.1|WP_003759224.1|72837_73518_+|IS6-family-transposase
MSHFKGKQFKQDIIMVAVGYYLRYNLSYRDVSEILNERGIKVCHTTVYRWVQEYGSIIYCLWKKRNKSASDSWRMDETYIKVKGKWHYLYRAIDSTGLTLDIWLRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSNTEHRTSKYLNNIIEQDHRPIKKRHKLYQSIRTASSTIKGIETIHALYKTSQRDFSLFGFSVIHEINNLMGVPA
>NC_003383.1|WP_011011048.1|70868_72518_+|primase-C-terminal-domain-containing-protein
MLVSDAIYTYSAVINTVVHEGLTAYRKKNSRGVMAVRDHFAAIEAASTNRKGVQFVVRDKSHLQTKCGVKGFIVTSQEALIAEVDQITHWTPNTYRVGTYSDRNRKYIKGHEEKNLQQINTFVIDIDTQKVDVAKMITASMRVLNQTPTFILKTDHGFQMYFVLETPSFVSNANQFKSLKIAKRISQNVKYAFAEELPAVDIGCNDFGFFRAPNTQNVAFLNLESQFDFHEMMEWSKSYSDQKRRSVLSLVPESSTAVFDATKQEWFSIMANLKNVRGRKGQYGRNNVAFTLALACYASGKSKQEATDLLDQFNDTLDAPLRFREIETCIRNAYSGRYQGANAEKISDILQTYWKSEYEIKGYTPFIFDEVGKVKPQFFRKHRKSREERTYSHFSEWEKDLECYIESQLLSGQTFLERSQRSVAEALKMPYATLKKILKQSDRIISRVNGKGRAAQTLFSTVAIVVEQAIRHALTKKVAEKEAYLEFLASFTDAAKHILVTLQTKGVPASGFNIHPVVQGDRSVQLSLNLLDKLYQQRPNNDNCQSRYG
>NC_003383.1|WP_026747205.1|69359_70205_-|ParA-family-protein
MQQKNTATVITVGNYKGGAGKTTNVVLLAYKLAKKGLKVCVLDLDPQSNATKSLLLTKSSLYQDEVVTIEKTLMTGISEKNLDGLEVKIMDNLYLLPSYIDFEDFPKYLYKNTSNQREEDYYLKNIFTPLQGKYDIVLIDVPPMSKAVTRNAVICSDYVLISLQTHERSLSGAESYVEELNKLHNEYDLDLEVVGVLPVIHKNNGSVDQYVMEVAKETFGEDNLFENVVPQMERIKRFDVNGITDKDRHDQKVLNLYDKVSDELLDRINYFEEEKEGAING
>NC_003383.1|WP_003726389.1|69034_69367_-|hypothetical-protein
MDNKGKGRGLINSKPNRVPGNFKPQESYTDSDLPSSSSNIQTESISKSAAKFKNQAGTIKTSMQTKEELQALKTITKTKFDYEIIDLLIDTYVNNELAPEQRRKFKAMTE
>NC_003383.1|WP_011011047.1|67397_68678_+|Y-family-DNA-polymerase
MVQVEDYTHVPSRDILCVDVKSFFASVECVKRGLDPLQAFLVVMSNADRAGGLVLAASPQMKKVFRIKTGSRKFEVPEDDPRIIIAPPRMQLYLKVNELIQKIFLRYVSREDFHVYSIDEAFLDVTHSKKLFGSAEVIAKKIQADILKELKLYVTVGIGDNPLLAKLALDNEAKHQKSGIAEWRYKDVPETVWKIRPITDFWGIGKRTAFQLERMGIYSIHGLSQMLPSYLKRRLGVIGEQLYYHAHGIDYSRLSEKYKPIEKSYGKSQILEKDYHDPNQIAIIIQEMVEEVAMRLRNHHVDTSVIHLSCGYSRYSTKNGFSHQKKIMSTSSSKELVPYFLELFWKYQENDAVRSVAVSCAGIKRKTSMQLSVFEDYTKTLQQEQLERTIDKIRERYGFKALMHANSLVAGATGLKRATLVGGHKG
>NC_003383.1|WP_003726387.1|67065_67410_+|hypothetical-protein
MAYRDRGMQKWQGMILSEHTEQLEQAKRKLSWLPQQSEECLVEILSYAVTKQHAITIQRLTEDENGYPLPFVVGRIVGVEDDRIYMRDMAGEITVLTFDDINHISEGTIEKWYR
>NC_003383.1|WP_003759336.1|77057_77435_-|hypothetical-protein
MQVVQGLFHFVDWIVEGIMQLGMIILALLGKGCLAFLHFLGDQFQASSNGTKFIYAIAIVVTILIILYFTWHILLMSAFVLAIVIPLFLFVGKIVVSILLVATLIFVVRWLVVTAKNVYQTKMAQ
>NC_003383.1|WP_041918454.1|79041_80256_+|phosphopyruvate-hydratase
MKKTVYFISIYPTVEVDVHLTDGTIGRAAVPSGASTGDREAVELRDGGDRLQGLGVKTAVQNVNLTLNDALVGISPFNQREIDHKMIELDGTANKSRLGANAILGVSMAVARAAAKSEAVPLYRYLGGIDLELPRPFFNVINGGKHADSGIDVQEFLITPIAALSFREGLESIADVYHTLKKLLSKRGLATSVGDEGGFAPRLASTEEALEVLVEAIKKAGYKPGEDIAIAMDPAASEFSENNTYYFEGKQLSSEEMIHYYEHLVQEFPIISIEDGLSEHDWEGFKLMTEKLGNKVQLVGDDIFVTNPIIFQQGIDKGIGNAILIKLNQIGTVTETIDTINLARKNNYATMISHRSGETGDTFIADFAVAMHAGQIKTGSIARSERVEKYNQFLRIEEELAKIK
>NC_003383.1|WP_011011054.1|80402_81557_+|cation:proton-antiporter
MEKIYLAIALVLGVSQIFGVLASRMGLPKIVGELLVGVVLGPSLLNIVQPGEFLHIFSEIGVLLLMFIAGMETDFKKLKANLKPSIIVALFGVIIPLVAFLLFGKYLHMETMESFFVGIIFSATSVSITVKIFMDSDILQTKVAAIVLGAAVIDDILAVLLISAYKSVDQLATANIFFMLWDLLLSKILFFIMLYLFYKFALPWIKRYTEKWTWSFLPVTITLIICFFWGYFAELMGLSAVLGSFFFGLMLAISGTKQRVEKEIDLIANSIFIPLFLTSIGAAITLSDIWGNVGPIALGTLLAIITKLGSCYIAARASKLSRPDSFLIGSGMMSRGEMALVTLNIGISLHFIGEDYYSIFVAIIVMTTILSPLFIKLALPKSSH
>NC_003383.1|WP_011011055.1|81573_81867_+|DUF3116-family-protein
MEKLSKEIMLQVLLTCESENATTWELSKMIIDVEGANRFTKSELLKAVYTLEYLGYVKRIKYGSSVRYTKTNEGVRFLDELKTQIKDNHNEDANIKQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NC_014496	Listeria grayi plasmid pLGUG1, complete sequence	46849-46876	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	33671-33698	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	76945-76972	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP014253	Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_01, complete sequence	2166-2193	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP014254	Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence	48614-48641	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MH277333	UNVERIFIED: Listeria monocytogenes strain nh1 plasmid, complete sequence	35594-35621	0	1.0
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	69188-69215	1	0.964
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP041212	Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence	60429-60456	1	0.964
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	80023-80050	1	0.964
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_MH382833	Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence	15276-15303	1	0.964
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	39426-39453	1	0.964
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	482281-482308	5	0.821
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013917	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S38-C100, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013911	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S26-C111, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013915	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S33-C106, * SEQUENCING IN PROGRESS *	19310-19337	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013916	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S36-C111, * SEQUENCING IN PROGRESS *	19316-19343	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013914	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S32-C111, * SEQUENCING IN PROGRESS *	20480-20507	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013912	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S27-C97, * SEQUENCING IN PROGRESS *	20477-20504	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013927	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S45-C110, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013563	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C1E-MedDCM-OCT-S31-C3, * SEQUENCING IN PROGRESS *, 3 ordered pieces	15535-15562	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013910	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S24-C93, * SEQUENCING IN PROGRESS *	1854-1881	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013922	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S41-C271, * SEQUENCING IN PROGRESS *	1854-1881	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013924	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S42-C110, * SEQUENCING IN PROGRESS *	2314-2341	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013920	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S40-C105, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	AP013925	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S43-C124, * SEQUENCING IN PROGRESS *	1864-1891	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MN693047	Marine virus AFVG_25M111, complete genome	30020-30047	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MN693506	Marine virus AFVG_25M112, complete genome	29781-29808	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NZ_CP032461	Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence	24147-24174	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	39121-39148	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MN693446	Marine virus AFVG_25M550, complete genome	9689-9716	6	0.786
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	KY421186	Flavobacterium phage FL-1, complete genome	46709-46736	7	0.75
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MK773491	Salmonella phage 7t3, complete genome	254592-254619	7	0.75
NC_003383_1	1.1\|76945\|28\|NC_003383\|CRISPRCasFinder	76945-76972	28	MT001829	Salmonella phage SE_PL, complete genome	94146-94173	7	0.75

1. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NC_014496 (Listeria grayi plasmid pLGUG1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

2. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP014251 (Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

3. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

4. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP014253 (Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

5. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP014254 (Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

6. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MH277333 (UNVERIFIED: Listeria monocytogenes strain nh1 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgattggttttttattttttc	Protospacer
****************************

7. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

8. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

9. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

10. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

11. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 1, identity: 0.964

tcgaatacgattggttttttattttttc	CRISPR spacer
tcgaatacgcttggttttttattttttc	Protospacer
********* ******************

12. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tcgaatacgattggttttttattttttc	CRISPR spacer
ttatatacgattgtttttttattctttc	Protospacer
*.. ********* *********.****

13. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013917 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S38-C100, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

14. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013911 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S26-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

15. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013915 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S33-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

16. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013916 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S36-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

17. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013914 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S32-C111, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

18. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013912 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S27-C97, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

19. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013927 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S45-C110, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

20. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013563 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C1E-MedDCM-OCT-S31-C3, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

21. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013910 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S24-C93, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

22. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013922 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S41-C271, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

23. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013924 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S42-C110, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

24. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013920 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S40-C105, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

25. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to AP013925 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1E-MedDCM-OCT-S43-C124, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ctaataacgattggttttttattttttt	Protospacer
...*  *********************.

26. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MN693047 (Marine virus AFVG_25M111, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagaaacgattggttttttatcttttt	Protospacer
*...* ****************.****.

27. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MN693506 (Marine virus AFVG_25M112, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagaaacgattggttttttatcttttt	Protospacer
*...* ****************.****.

28. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NZ_CP032461 (Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
acgaaaacgattggttttttagttaatg	Protospacer
 **** *************** **  *

29. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
taatatatgattggttttttatcttttg	Protospacer
* . ***.**************.****

30. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MN693446 (Marine virus AFVG_25M550, complete genome) position: , mismatch: 6, identity: 0.786

tcgaatacgattggttttttattttttc	CRISPR spacer
ttagacacgattggttttttatgttttt	Protospacer
*...*.**************** ****.

31. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
aaaaataccattggttttttattttgat	Protospacer
  .***** ****************  .

32. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
ttttatatgattggttttttattttaca	Protospacer
*.  ***.***************** .

33. spacer 1.1|76945|28|NC_003383|CRISPRCasFinder matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 7, identity: 0.75

tcgaatacgattggttttttattttttc	CRISPR spacer
ttttatatgattggttttttattttaca	Protospacer
*.  ***.***************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

819 : 65305

Streptococcus_phage(42.31%)

integrase,transposase

attL 22096:22155|attR 73513:74319

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011011009.1\|819_2046_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	5.2e-134	60.4
WP_149021279.1\|2130_3306_-	class I SAM-dependent methyltransferase	A0A240F4T3	Ochrobactrum_phage	1.2e-63	42.0
WP_012952173.1\|3347_3692_-	TnpV protein	NA	NA	NA	NA
WP_011011011.1\|4404_4803_-	hypothetical protein	NA	NA	NA	NA
WP_003728486.1\|4976_5312_+	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_011011012.1\|5349_5880_-	hypothetical protein	NA	NA	NA	NA
WP_011011013.1\|5993_6758_-	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	1.7e-05	28.7
WP_031641939.1\|6777_7140_-	hypothetical protein	NA	NA	NA	NA
WP_011011014.1\|7150_8491_-	hypothetical protein	NA	NA	NA	NA
WP_011011015.1\|8483_8924_-	hypothetical protein	NA	NA	NA	NA
WP_011011016.1\|8935_9175_-	hypothetical protein	NA	NA	NA	NA
WP_011011017.1\|9631_10312_+\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.0e-126	98.7
WP_011011018.1\|10454_10976_-	hypothetical protein	NA	NA	NA	NA
WP_011011019.1\|10990_11566_-	ComF family protein	NA	NA	NA	NA
WP_011011020.1\|11581_12565_-	protein rep	NA	NA	NA	NA
WP_011011021.1\|13315_13654_+	hypothetical protein	NA	NA	NA	NA
WP_011011023.1\|15480_20190_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	3.6e-50	28.3
WP_011011024.1\|20186_20732_-	HTH domain-containing protein	NA	NA	NA	NA
WP_011011025.1\|20731_21892_-	replication initiation protein	A0A1V0E006	Clostridioides_phage	3.0e-06	25.2
22096:22155	attL	NA	NA	NA	NA
WP_003759224.1\|22149_22830_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-93	69.9
WP_003725275.1\|23025_23319_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	1.5e-07	36.2
WP_003725276.1\|23376_23652_+	hypothetical protein	NA	NA	NA	NA
WP_001015311.1\|26726_27407_-\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-127	99.6
WP_003725278.1\|28514_29072_-	hypothetical protein	NA	NA	NA	NA
WP_159097391.1\|29072_29303_-	hypothetical protein	NA	NA	NA	NA
WP_001015311.1\|29364_30045_+\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-127	99.6
WP_002333381.1\|30419_30713_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	4.9e-14	42.2
WP_002333380.1\|30714_31086_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_011011029.1\|31219_31585_+	helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.2e-19	43.3
WP_002333378.1\|31620_33363_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_041918452.1\|33446_34508_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_002339824.1\|34561_35608_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_011011031.1\|35628_37302_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002333374.1\|37326_37506_+	hypothetical protein	NA	NA	NA	NA
WP_001015311.1\|38439_39120_-\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-127	99.6
WP_003728481.1\|39311_40676_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-07	23.5
WP_011011034.1\|40921_41791_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003750113.1\|42150_42471_+	hypothetical protein	NA	NA	NA	NA
WP_011011035.1\|42661_43426_+	UPF0236 family protein	NA	NA	NA	NA
WP_003728476.1\|43888_45772_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.6e-87	35.3
WP_002319817.1\|45891_46572_-\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-109	84.1
WP_049781576.1\|47608_50284_+	sensor histidine kinase KdpD	A0A2K9L0Z8	Tupanvirus	1.1e-14	25.1
WP_011011037.1\|50276_50999_+	response regulator transcription factor	NA	NA	NA	NA
WP_072235495.1\|51209_51287_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_011011038.1\|51306_53028_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_011011039.1\|53041_55102_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	9.6e-40	26.4
WP_041918453.1\|55139_55478_+	hypothetical protein	NA	NA	NA	NA
WP_011011041.1\|55500_56139_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
WP_149021280.1\|56347_56608_+	hypothetical protein	NA	NA	NA	NA
WP_011011042.1\|56843_57395_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.4e-40	51.1
WP_011011043.1\|57625_58483_-	AAA family ATPase	NA	NA	NA	NA
WP_003725298.1\|58475_59912_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	9.4e-18	24.8
WP_003725299.1\|60070_60670_+	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	1.8e-15	31.8
WP_003726380.1\|60943_61303_+	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	5.4e-23	48.2
WP_003726381.1\|61299_63417_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.3e-235	62.6
WP_023558764.1\|64061_64565_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	6.6e-19	35.9
WP_011011045.1\|64624_65305_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.5e-93	69.5
73513:74319	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003212

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_003212_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003212_1

686795-686954

Orphan

Consensus_repeat	Method
GGAACTTCTGGTGTTTCGGGTTCTA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_003212_1

>merge|NC_003212|1|686795-686954|CRISPRCasFinder
GGAGCTTCTGGAGTCTCAGGAGTTTCTGGTACTTCTTTCGTTTCAGGAGCTTCTGGAACTTCTGGTGTTTCGGGTTCTATCGTTGTTTCAGGAGTTACTGGAGCTTCTGGTTCTACTTTTGTTTCAGGTGCTTTCGGAACTTCTGGTGTTTCAGGTTCTA

>NC_003212|1|1|686795-686954|CRISPRCasFinder
GGAGCTTCTGGAGTCTCAGGAGTTT	CTGGTACTTCTTTCGTTTCA
GGAGCTTCTGGAACTTCTGGTGTTT	CGGGTTCTATCGTTGTTTCA
GGAGTTACTGGAGCTTCTGGTTCTA	CTTTTGTTTCAGGTGCTTTC
GGAACTTCTGGTGTTTCAGGTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003212.1\|WP_010990537.1\|682844_685535_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NC_003212.1\|WP_010990534.1\|676349_678170_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_003212.1\|WP_003760863.1\|681187_682138_+\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NC_003212.1\|WP_003760873.1\|687988_688198_+\|hypothetical-protein	unknown	unknown	unknown
NC_003212.1\|WP_010990539.1\|686237_686774_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_003212.1\|WP_049781513.1\|690347_692201_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380193
NC_003212.1\|WP_003770818.1\|675659_676310_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|223254
NC_003212.1\|WP_010990538.1\|685581_686229_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_003212.1\|WP_010990536.1\|679884_680724_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NC_003212.1\|WP_003765781.1\|680806_681091_-\|hypothetical-protein	unknown	unknown	unknown
NC_003212.1\|WP_041918366.1\|694665_697155_+\|LapB-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380190
NC_003212.1\|WP_003760874.1\|688271_688979_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NC_003212.1\|WP_003760876.1\|689708_690125_+\|hypothetical-protein	unknown	unknown	unknown
NC_003212.1\|WP_003765783.1\|682161_682803_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_003212.1\|WP_003760875.1\|689024_689588_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|225204
NC_003212.1\|WP_010990546.1\|697207_697516_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_003212.1\|WP_010990544.1\|694102_694384_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_003212.1\|WP_010990543.1\|692971_693868_-\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NC_003212.1\|WP_010990535.1\|678403_679795_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_003212.1\|WP_010990542.1\|692345_692975_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140

Protein	Function_ID	Function_description	E-value
NC_003212.1\|WP_010990537.1\|682844_685535_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	0
NC_003212.1\|WP_010990534.1\|676349_678170_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	3.42238e-139
NC_003212.1\|WP_003760863.1\|681187_682138_+\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.04114e-117
NC_003212.1\|WP_010990539.1\|686237_686774_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.2005e-06
NC_003212.1\|WP_049781513.1\|690347_692201_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	2.20499e-112
NC_003212.1\|WP_003770818.1\|675659_676310_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	3.09369e-64
NC_003212.1\|WP_010990538.1\|685581_686229_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	6.96098e-27
NC_003212.1\|WP_010990536.1\|679884_680724_+\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	5.739e-120
NC_003212.1\|WP_041918366.1\|694665_697155_+\|LapB-repeat-containing-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	2.77785e-22
NC_003212.1\|WP_010990535.1\|678403_679795_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.65822e-136
NC_003212.1\|WP_010990544.1\|694102_694384_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.5246e-08
NC_003212.1\|WP_003765783.1\|682161_682803_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.95465e-29
NC_003212.1\|WP_003760875.1\|689024_689588_-\|DUF420-domain-containing-protein	gnl\|CDD\|225204	COG2322, COG2322, Predicted membrane protein [Function unknown].	1.89074e-63
NC_003212.1\|WP_010990546.1\|697207_697516_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.0015e-20
NC_003212.1\|WP_010990543.1\|692971_693868_-\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	1.36841e-21
NC_003212.1\|WP_003760874.1\|688271_688979_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.99997e-22
NC_003212.1\|WP_010990542.1\|692345_692975_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.3231e-89

>NC_003212.1|WP_010990539.1|686237_686774_-|GNAT-family-N-acetyltransferase
MNQNKITAGGLEFLVRFALPNDRSAINELMVNTARWLKESGSTQWSDILHGFDVHNIEQRIELSEVALFEAADGKLAGVMIIRKTPSDWDTDLWGDRHEQSAYYLHRIMVSRDFSGISLSKQMISFAEQLALNMSVPFVRLDCIKTNEALNQMYLRYGFMFSGEKNGFNLYQKELSLL
>NC_003212.1|WP_010990538.1|685581_686229_+|GntR-family-transcriptional-regulator
MVNKYKTLDKMVYNLLLEKIKKGDLVRNEHLAEEKLAAEFGVSRSPLRKAIATLTAQGIVSYHENSGAVLNDVLIGSDRYVQLMDTIDILVDAAIAKVGHFSLVMDIEKLHERLQEMERFSYLTDVESYFDAHHRFILCLISFAENPYQVKIAKDIFFQMVHFSDGINIFKSVEIREWTNKKSSQIYELLAQDKTEMARKTIKSMFAELTIQAYR
>NC_003212.1|WP_010990537.1|682844_685535_+|YhgE/Pip-domain-containing-protein
MRKVYEIFVLDWRRLFKAPLALLLVIALIILPSLYAWFNIEALWDPYSNTSGIKVAVSIDDEGAEVDVPGKKPQQVNVGDQLKKTLEKNKKLGWTFVSEEEAKKGVKSGKYYASIHIPKNFSEDMVSVVSDNVKKPTIDYSVNEKINAIAPKMTESGATTIVNQISSEFVGTVSKAVLEEFNKAGIDLENELPTIRRLKTKVFQVQDALPELKKMGAEAVKIEAKLPELKTKANQVVELNEKIPELNKATENVLLVEEQLPKIDQLGQDILVLQKKIPEIKQIAQSVKEVDENFGTIKKTVNDAVNESGKALDVIDTATAAIPTVEKIAQNGSGYVDKVSDFADEINKSFDTLAPAIKQNLTLMKQMADNIYQVTEAIKNGSINSEQAISELKKMENDIDSLQQMITKQTATLESLNETLPNKPFTDLIANLKTINSQLGAQKQTITKVRTALENGEQPAEELLNQLNEQAKNVSAKLDQILANYDSEIVPAIKTGLNQIQGDLKDSQKLLQNLQAKIPEITQVLKDSRETLQTGQTYLKEFQERLPEIQKTLDEATKVINTKLDTIIAGINEAADFYQNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAVKIAANLSREELPEFEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVNLKETSYYPIPNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALIVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISGAGGNFPIQVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWIDMSVLAGFAILFIALGLLLKKPLDKVVPKLSEKAKRSKLIH
>NC_003212.1|WP_003765783.1|682161_682803_+|GntR-family-transcriptional-regulator
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKSKNLTYKPEQGNELLKEMRIIQKEENVDAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFNKAQKDIKIIPVLLEEETMDTLEQLTFYMVEKKYDLAKEVMQKLVNLYIIRTFR
>NC_003212.1|WP_003760863.1|681187_682138_+|magnesium-transporter-CorA-family-protein
MIEFFKTTNEKMEQLSELEDGCWVKVTAPTEDEIEQLSKEMDVPKPYILDALDSEERSRIELKRAEQDVRHSLVIVDYPYESEDELGYTMYETLPIGIVLTRKYLVTISLRDLLILEDVRTMKLETYDTTNHKQFLLKLLYAVSYYYLKYLNQIIKQTNNLEIQIKQSMKNEQLYAFMAVQKSLVFFATALQSNKAILDKMEDVEHFMQQEDNHDLLRDVIIENKQAIAMTDTYTQIISGMSDVFSSVISNNLNIVMKFLTSFTIILSLPTIVASVYGMNIKLPFMHNEHAFALILLFTLLITTGVTVIFWRRKYF
>NC_003212.1|WP_003765781.1|680806_681091_-|hypothetical-protein
MEFMSMILTGIVLAAIISGLSFVVGKLSGLSWFWIAFCANSGFFIIFITVQNSFPDNAAVALSYLNLGIGVVLIALTLFQSSNWLFKKTMQRKH
>NC_003212.1|WP_010990536.1|679884_680724_+|VOC-family-protein
MVEISEKLRLGEVVLNVGHLKEMAGFYQEVIGLTLLEENDRIVRLGVPDSSEALLVLKKIDHAVVPEVPRIGLFHTAFLLPNRESLADVLVHLAQSGYPIDGAGDHAYSEALYLHDIEGNGIEIYADRPKNSWMRDSAGNLPMVTEQVDVDDLLKIATGEPFTGMPSGTIIGHVHLQVADADKAEQFYKEALGMNLTTAIPSARFFAAGDYHHHIGSNMWAGRNLENRRENEVGLAWFTIITPDKEAITTNLEQQGYEVKRFDETISVTDSNGIMIHFK
>NC_003212.1|WP_010990535.1|678403_679795_+|amino-acid-permease
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAAKNAGPAIIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAVSGPFNPEVGTFINLPAIIIVLVIAFLLTLGIKESTRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVSSAAEEVKNPQRTMPIGIIGSLLICTILYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILVMSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFAFIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKNKSIQQSGFKVPFYPVLPIISFLLCAFLISRLSVHTWILCGIWFVIGLIVYFAYGRKNSELLKK
>NC_003212.1|WP_010990534.1|676349_678170_-|LTA-synthase-family-protein
MILFYFLLIISKFTFAYFQIFKDPNFLALGMDLLFIVLLLGLIHLFAPVRSHVYWYAGMSLFIGILMLVCVLYARFYNEVPTYHSFSLIGEVGVVKTSATSLLSGTDWLYIMDIILLPFILYFSIKKGHVFPSFRLTKRIYGVSFLSTLLVLSGFTYFMMQQNIISDSKRAKRMGIFTFNISTALAGTDHVKAADITAKNVRDIKGVDLKEKPDYFGAAKGKNLIIVQLESFQRNLTNIKIDGQSITPTLDSLQNETMYSNKFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYTTSTFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEKQYKNNQKFYAQLISVSSHMPFNIPEEKQEINLPSDLKDTELGNYFEAVHYADKQLGAFIQKLKDSGIWEDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTELKADPADDYRIPFFLHYPGMKNPGEIKNVGGEIDIMPTVMNLLGINTGNQIMFGTDILNSTNNYVPERYTMPEGSYFTDSYMYQPDESFETGAATNYNGTNKELSDEVKKRFETSRKLLQYSDSYVNNLPLRDEDK
>NC_003212.1|WP_003770818.1|675659_676310_+|fructose-6-phosphate-aldolase
MFLDTGNLEEIKKALQFPFFEGVTTNPTILLKENQPRKTHIAHIPAKLVFVQAAGLTEEEIWEDVLRIQEIKPAEGTVIGLKIPAHEAGIKVIATVRAKFPDAIILATAIFSSEQGYIAALSGADYLAPYYNRMEVSGLDAAKTIEELRYVLDLQGLEEVKIMGASFKNSRQIMQALASGADTVTIGYDLFLQMMNKPLALESIEKFNEHNAALPK
>NC_003212.1|WP_003760873.1|687988_688198_+|hypothetical-protein
MAHESLRELEDRLIELRQQYQEALSETREFEDPQLQNGPINAAEVRLSALRHEIAEVEKKIKKVEGNTK
>NC_003212.1|WP_003760874.1|688271_688979_+|serine/threonine-protein-phosphatase
MKPIFAVGDVHGEITLLDELLENWNKEQERLLFVGDLIDRGENPAAVLRRVKELADETEVIVLKGNHEQMLLDFLDNPSEKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVQEEASELIDFIRHLPLYYEEGKYVFVHAGVDFSKPNWHDTEERDFFWIREPFLFGKNKTGKVFIFGHTPVQNLHSDGSARIWVSEDRTRLDIDGGAVFGGELHGVVVEENVITKSFSVKK
>NC_003212.1|WP_003760875.1|689024_689588_-|DUF420-domain-containing-protein
MEHNKEKLTKPTSDKNYFWPIMIISFVAVVVILLLFFSPIGYQGAVHFDITIFPRMNAIFNSFTFVFLVIALWAIIKKKNIKMHRGFILAAFTSTLFFLVTYLTFHYLSAETSTFGGTGIIRPIYFFILITHSFLAAIVVPLALFALVWGWTMQIEKHKKIVRWTMPIWLYVSLTGVLVYLFMAPYY
>NC_003212.1|WP_003760876.1|689708_690125_+|hypothetical-protein
MSIIARELTKAEEAEIIRLKEEGEVMLETDGTPEERIEKIAKYLKDTSPDFDLAEELGYILGSLYGEAVREKYQWRWLFISENDVEGYAITSKEHGYTLMAHDYFMQVIVRNKPDNSKKLFELMPDMTGNKDGFRVIG
>NC_003212.1|WP_049781513.1|690347_692201_+|leucine-rich-repeat-domain-containing-protein
MVYFMILQLKKLTSKEERNGYMINKQHFYKVIQAFIGVLLIGSVFIWLGSNNDVNAEEQSITEPTPINEIFPDAKLAEVMRNYLSKTNVTDTVTQEELNNITIVGATSTGIESLEGIQYLPNVTTFNFNGEKIQDISFLSNSTKLENLDLSGNPIKDFSPIANLTKLHTLNLMNCEISDISFITNLTELKSLYLSNNRITNISPLANLTKLDYLIIENNQITDLTPLKNMKNLNNLVISGNQINDITTIAELTSLQNLSISDNQIVDISPLANLNNLNSLAIHKNNIVDTSPLANLTQLKFINIRDNQIDDITGLTNLTNLTNLHLGGNEISDLTPLANLTNLNLLDLTNNQISEVIPLANLTNLSNLWLNGNNIIDISPLKDLKGLKNLSLSDQRIQKNPELFKTNFTLTNNIKDLDGGLVEITDISHNGTYDNPIVTWELPRYVNEISYKYTQHVQIGNSKTDYDVTVRQPLSLPSHTVNFIVDDVLKTSLEVKEEALITQPAAPKKAGYTFTGWYDAKTGGDKWDFETAEMPRNDMTLYAQFSENEVIPVDEDVDLIVEESGPVQESNDDVPPVTEPTKNIVMLPKTGDSNNMLFVGLGLLLFGTGVVISKKLR
>NC_003212.1|WP_010990542.1|692345_692975_+|endonuclease-III-domain-containing-protein
MNINKQKVQVLNNLVELYGYQDWWEDDNRLADWLSMILIQRTTEKNANQALANLAPYLDLDSLTKMDTVQLEELIYPAGFYKQKSLYIKALIEWFVGHGASLDKFKSYSTEDLRKELLGIKGVGEETADAMLLYIFERNVFIADLYARRLFTRLGFGEYKTYEQMREEFMPITENIPHKLCKEWHSVIDVHGKHFGKDKSMNESWLLES
>NC_003212.1|WP_010990543.1|692971_693868_-|Rgg/GadR/MutR-family-transcriptional-regulator
MVGYGKTVRDIRTSKGIHQKDLYDNIISKSFAIEFEKGKHDITLTLFEKILKRMNMDLDEFFYIHRELSVSAENNYLCMNQERGNIYDLASLELLYSELSKHNGELVEVWKAFVRSQIKLVKHLFKYHEFTVDVITSKDKCTIQKYLFSIDTWTLEELKICANSIYFFEEDLQIQFLNQVIKAIHPYKNYDRARRVLCTLLINTIEMFISRGQLSSANKLIILLDSLCIYNESAFYRNISHFLKGLIKMQNNHIQEGYNQAKKAIQIMNDLRFEEIAYLYEILLDQFIRLKGIDIVKS
>NC_003212.1|WP_010990544.1|694102_694384_+|transposase
MAKAKYDENFKKSLVALYRRGKTKHSICQEFSVPNSTFGKWVKKFNNDDNIESNEILNILQAQELKKQRVLLEEELSILTEAIAVFENPPSND
>NC_003212.1|WP_041918366.1|694665_697155_+|LapB-repeat-containing-protein
MKKILHIVIALSVICSIILVPVDWPAKADGNNKRDDLIKSVGFYKSDGQNVMAKENYNEKLNYFLEVAFGGNSFQKGDYFNITLSSDTLLYTEKAYDLKVDVDPTAVTNEQVVGKVTVEKINGSPTLHFVFTEDSESFFMKNFDANFKIQVMPAHGDKNVINLSYSGAAKNFKNIGTSSVELNVNMASDWPPVGIKDFTKKSGDLYHAILVYEKPSSKVNYETEILVSYPLFEKRIPLGNVQNIKIEVWDEAKEIYRIGVAGVDYGTITYDVGTPFVGGPIFQMNCTIPFKGISTKTRVSFDIDTNVDGKPGTTDPYLVSLSSVSSATKSLEFYPVNNADTKMTAAFFGKVTTRFEDELGNPVTFNDYSTVTTPGKVNQDGKFEIAEPFLHNSVQNVDKHAYDSLLNTNKYKLLEVTSPNKLSETADNLSIQIKQGYQNDVLYKIKALQKPVISALPEIEYSKTVNRTMEEFLEDVEAKTDIPADIKCDLTNVKWGVPGDYPVLITAVNEDNQAADPVPVTIKISKNPAPVITVDPEIIYDKTVTKDESTLLNEVNARTNDGSTITSNINDKVKWGVPGDYEVTLNAVNEDGVAAEAKTFIVRILKSPAPIIAVDPEITYPKTVTKTEAELLQAVNAQTNDGSPLVSDMNDKVKWGVPGDYEVTLNAVNEDGVAAEAKTFIVRILKSPAPIITVDPEVSYDSAIIKNETELLKEVRAKTNDNSAITSDAPDKVKWQTPGSYTVTLNAVNEDGIPADPVTFIVHIVEAKKAPIVIEENPADTPTKPSKQKPKEKIVIKKTTKLPRTGDTQSKAILGGVLCLGAWFLVRKK
>NC_003212.1|WP_010990546.1|697207_697516_-|carboxymuconolactone-decarboxylase-family-protein
MKVSKSFEVFAKEAPEVHSAWMETVHKLDTASKLDKKTEELAYIAVMAATRLESGLPFHVTMAKTNGATREEIISAILVGLPAVGNTVISALPVALEAYDKV

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Crispr_ID: NC_003212_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003212_2

2356073-2356159

Orphan

Consensus_repeat	Method
AGCCACTAGAAAAATACCAACAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003212_2

>merge|NC_003212|2|2356073-2356159|CRISPRCasFinder
AGCCACTAGAAAAATACCAACAGCAACGCTCCAAATCGATTGAAAAATCACTAAAACTACTAAAGCCACTAGAAAAATACCAACAGC

>NC_003212|2|2|2356073-2356159|CRISPRCasFinder
AGCCACTAGAAAAATACCAACAGC	AACGCTCCAAATCGATTGAAAAATCACTAAAACTACTAA
AGCCACTAGAAAAATACCAACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003212.1\|WP_003763559.1\|2350211_2350964_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_003212.1\|WP_010991125.1\|2348462_2348966_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NC_003212.1\|WP_003768022.1\|2366403_2366829_+\|low-molecular-weight-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223471
NC_003212.1\|WP_010991126.1\|2349004_2350228_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226879
NC_003212.1\|WP_003763578.1\|2363632_2363830_-\|PLDc-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379161
NC_003212.1\|WP_010991130.1\|2362730_2363633_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_003212.1\|WP_003769842.1\|2352774_2353650_+\|foldase	unknown	unknown	gnl\|CDD\|235295
NC_003212.1\|WP_010991127.1\|2353739_2354681_-\|3'-5'-exoribonuclease-YhaM	unknown	unknown	gnl\|CDD\|237394
NC_003212.1\|WP_003768024.1\|2366891_2367761_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_003212.1\|WP_003769851.1\|2361936_2362731_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_003212.1\|WP_003769860.1\|2363935_2366080_-\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|273955
NC_003212.1\|WP_003768001.1\|2351576_2351939_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|227313
NC_003212.1\|WP_003763561.1\|2352118_2352658_+\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NC_003212.1\|WP_003763570.1\|2359262_2360396_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|226834
NC_003212.1\|WP_010991129.1\|2360499_2361867_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_003212.1\|WP_003769831.1\|2347213_2348266_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_003212.1\|WP_003763565.1\|2357448_2358684_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NC_003212.1\|WP_003763560.1\|2351124_2351547_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|238608
NC_003212.1\|WP_010991124.1\|2346277_2347207_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NC_003212.1\|WP_003763567.1\|2358827_2359181_-\|YlbF/YmcA-family-competence-regulator	unknown	unknown	gnl\|CDD\|237467

Protein	Function_ID	Function_description	E-value
NC_003212.1\|WP_003763559.1\|2350211_2350964_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.17965e-84
NC_003212.1\|WP_010991125.1\|2348462_2348966_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	4.63839e-21
NC_003212.1\|WP_003768022.1\|2366403_2366829_+\|low-molecular-weight-phosphatase-family-protein	gnl\|CDD\|223471	COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms].	6.91362e-25
NC_003212.1\|WP_010991126.1\|2349004_2350228_-\|ABC-transporter-permease	gnl\|CDD\|226879	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion].	1.01345e-126
NC_003212.1\|WP_003763578.1\|2363632_2363830_-\|PLDc-N-terminal-domain-containing-protein	gnl\|CDD\|379161	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal. This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.	8.80181e-05
NC_003212.1\|WP_010991130.1\|2362730_2363633_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.22887e-91
NC_003212.1\|WP_003769842.1\|2352774_2353650_+\|foldase	gnl\|CDD\|235295	PRK04405, prsA, peptidylprolyl isomerase; Provisional.	1.62816e-66
NC_003212.1\|WP_010991127.1\|2353739_2354681_-\|3'-5'-exoribonuclease-YhaM	gnl\|CDD\|237394	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional.	0
NC_003212.1\|WP_003768024.1\|2366891_2367761_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	4.95981e-99
NC_003212.1\|WP_003769851.1\|2361936_2362731_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	2.15106e-05
NC_003212.1\|WP_003769860.1\|2363935_2366080_-\|penicillin-binding-protein-1A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_003212.1\|WP_003768001.1\|2351576_2351939_+\|YtxH-domain-containing-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	8.72505e-30
NC_003212.1\|WP_003763561.1\|2352118_2352658_+\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	5.81621e-16
NC_003212.1\|WP_003763570.1\|2359262_2360396_-\|DUF445-domain-containing-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	7.03685e-172
NC_003212.1\|WP_010991129.1\|2360499_2361867_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_003212.1\|WP_003769831.1\|2347213_2348266_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NC_003212.1\|WP_003763565.1\|2357448_2358684_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	7.35532e-64
NC_003212.1\|WP_003763560.1\|2351124_2351547_+\|HIT-family-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	1.62697e-57
NC_003212.1\|WP_010991124.1\|2346277_2347207_-\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NC_003212.1\|WP_003763567.1\|2358827_2359181_-\|YlbF/YmcA-family-competence-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	3.33162e-43

>NC_003212.1|WP_010991127.1|2353739_2354681_-|3'-5'-exoribonuclease-YhaM
MEKRLLDYEVGETVELFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEINYGVQQIVHLMGDIQNYRGRKQLKIRQIRQASPLDGVSASEFMETAPINKDEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGLSFHVVSMLRLAKSVADLYPTVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIAEELSIDGEEVVVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPTFE
>NC_003212.1|WP_003769842.1|2352774_2353650_+|foldase
MKKKLILGLVMMMALFSLAACGGGGNVVKTDSGDVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANADTSDKALKEYYKTWQPDITVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDKPATKTTFDKDKKAVKEAYLASQLTTENMQKTLKKEYKDANVKVEDKDLKDAFKDFDGSASKDSSK
>NC_003212.1|WP_003763561.1|2352118_2352658_+|DUF3267-domain-containing-protein
MRCLKSINTERRDEFNRLFLKGILVWLAAVCICFLTQHLMYPGQLTNDYQFMSFLGIVLIYPIHKLLHIIGCFKYREGTVIQWRIHFFILPCIKLNIKRIIPKWHYIFSLILPFVVITTILITLMLITPIGHSGMFLILLSVHFGMSFSDFTHIKKLWKMPKNCFVESAERGFSILISD
>NC_003212.1|WP_003768001.1|2351576_2351939_+|YtxH-domain-containing-protein
MNKKSLIFGILAGGAIGAAASVLFAPKSGNELRKDIVAKSGEASVILKELAYNANELIQSVQVLGSEGSTLLKDVSSDIMESVSKWNEEMEPEKKRLKDEIKDMQKTISDLEKTLKKDNK
>NC_003212.1|WP_003763560.1|2351124_2351547_+|HIT-family-protein
MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPKKHARNTFDLPEETAAELFRRVPKIARALKEALPLQGLNILNNNEEVAYQSVFHCHIHLIPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD
>NC_003212.1|WP_003763559.1|2350211_2350964_-|ABC-transporter-ATP-binding-protein
MALVEVEHLTGGYTKRPVLKDISFAIEEKQIVGLIGLNGAGKSTTIKHITGLMHPKQGTIKINGHQLVEDTETYRKQFSYIPETPVLYEELTLKEHLELTGMAYGLSQEELQERMPPLLKEFRLEKKLNWFPAHFSKGMKQKVMIMSAFLIEPKLYIIDEPFVGLDPLGIQSLLNWMDEMRSEGASILMSTHILATAEKYCDTFIIIHQGEIRAEGTLKDLQTNFEMPGASLDEIYIQLTKEEEADEDDI
>NC_003212.1|WP_010991126.1|2349004_2350228_-|ABC-transporter-permease
MKMIFDSKALWKERFSAYTTEVMRYLRYMFNDHLLFVLIIGLGAGIFYYAGWVKTLEPSFPVIPLMVILLTASIAISPVATLLQKPDVVYLIVQEKAMDAYFSQAKIASFFMQLYVFVIVLGICMPMYVEVTGIPYSQFFTLFIVLALLKAWNIYFGFESMKLEDADTTWMFVRVIVNAILIYISLISAPFISIPLVLVVILASYYWIKKKTSKVTLRWEYLVDKEEARMNRFYRLVNLFTDVPHLRGTVRRRNYLDFLYQPIPYAKRKTFAYLFSRTFVRTNEYIGLYVRLTVIAVILLVFVQGFYLNIIFSLLFLYLTGFQFIPMLKHYDAQIMLRLYPIDDAYRHRSFIHFLRILLLGQAILFSLIGIAQNGTIGGMVILGINLAFVAIFTFLYAPIRIKKMYE
>NC_003212.1|WP_010991125.1|2348462_2348966_+|antibiotic-biosynthesis-monooxygenase
MKKVFITTGTEHYLRQLMENYIGENVTLLQNFSQSLLYQESTGEKLFQEGKEYRVLQSSGSLKGFGIVVFEYIQLRDEEIPIFLQMYQHASLHFSETPGLQSTKLTKAMNTNQFLIVSFWDSEVFFQEWKKTPLHKEITSIMKKNNTQVGFSHEDIYHYPEFSHDAK
>NC_003212.1|WP_003769831.1|2347213_2348266_-|uroporphyrinogen-decarboxylase
MTKITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYSLFEITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPIRTFQDVEKLTIFKPEIEVPYVLDTIKLLADDMLDVPLIGFAGAPFTLASYMIEGGPSKNYHQTKSFMYREPEVWAILMEKLGRMTANYLIAQINAGASAVQLFDSWVGALSRADYAQYIRPVIEMIVKEVKAVHPTTPIIMQAVGASHLLAEWETMPLDVVGVDWRETITTARQKVPTKAIQGNLDPSTLLAPEKCIAETERILQEGILEPGYIFNLGHGVFPEVPPEMLKKLTKYIHERSEILLKKG
>NC_003212.1|WP_010991124.1|2346277_2347207_-|ferrochelatase
MTKKVGLLVMAYGTPYKDEDIERYYTDIRHGHKPSEEMIADLRGRYHAIGGLSPLAKITEAQAYGLEKALNDAQDEVEFKAYIGLKHIEPFIEDAVEAMHKDGIEEAISIVLAPHYSSFSVEAYNKRAKDAADKLGGIHIQAINDWYKQPKFIQMWADRINETAKQIPAEELIDTVLIVSAHSLPEKIKQHNDPYPDQLQETADLIFDKVAVPHYALGWQSEGKTGEPWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYECKVVTDEVGAAYHRPPMPNADPEFLEVLRTVVWDAYTK
>NC_003212.1|WP_003763565.1|2357448_2358684_-|exonuclease-SbcCD-subunit-D
MKEIKFLHIADLHLDSPFIGLSTLPQPLFSAVQESTFQSLERIITIAIKEAVEFVLIAGDIYDSEDQSVRAQARFSKEMKRLEQAGIKAFIIHGNHDFIEKHKEKLQLPGNVHVFSEQVEMAAMETKNGAIVHIYGFSYGERHIRASRVNEYNKQGEADFHIGLLHGSELSSSEDHDVYAPFRIQEITKKGFDYWALGHIHKRQLLAESPSVYYPGNIQGRNRKESGEKGASIVTLSASNTTIDFIATSPIIWEEVIITLPENSEINTFYREITKLLATYQGQSNSFFLHVIVQMANKQKINTTDWLQMLQEETDLTGSTFIWVHKLTIELTNQSDLKNWHEQHLASKEITQAFEKLQDESAFYQTVEALYFESGVSRYLDDLSEEDRQLMLDAALTELGTVLKEVEGDEK
>NC_003212.1|WP_003763567.1|2358827_2359181_-|YlbF/YmcA-family-competence-regulator
MAVNIYDVAHDLDKGIRETPEFISLQDAYREVNENADAKAKFERFRDVQVTIQEKQMTGQEIDDETVNVAQQVAQEVQENELIVKLMEKEQAMSTIINDLNRIIMTPLQDLYNVAND
>NC_003212.1|WP_003763570.1|2359262_2360396_-|DUF445-domain-containing-protein
MSVLFTILLMAVIGGFIGAMTNYIAIRMLFRPYKAVYLFNKRLPFTPGLIPKRRDELAEHIGKVVVSHLLTEDAIRARLLDENLQREVTETITKMFHEKMKLETTPNELLHHLGYENAEVRSISWLERTLEIEISRFLTTKQSTQMSELIPSMLENELTKKLPHVTERITSKMSVFIASEAGKIQIKQMLQKFFEEHGKMGSMARMFINIDSFSEKIQQEGLKLINQEDTKNIINQLLTTEWHNFEAKELQELIPTEKQAHLAGQLTSEIIQAVPHEKLFNQPIQGILRNYESAITEKMIPFAVERMLDFVATHSAEIVERMDLAKLVETQIATFSLPEIEKLVVEISGRELKMITYLGGILGGFIGIIQGILAMWI
>NC_003212.1|WP_010991129.1|2360499_2361867_-|class-II-fumarate-hydratase
MERIERDTLGEISVDATKYWGAQTERSRRNFAIGDNYMPKEIIYAFAQLKKAAAKVNALEGKLSEAKSVAIGNVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTLGEEKVHPNDDVNMSQSSNDTFPTAMHIAAYQALVTKLLSEITKMEEVLTTKKNQYMQLVKIGRTHLQDATPLTLGQEISGWEACLTNNKNYLESSMKAILPLAIGGTAVGTGLNASKDFGDKVAEELRKQTGYPFTSDSNKYFALTSHSPINFVHGAIRSLASDLMKIANDIRLLASGPRSGIGELTLPANEPGSSIMPGKVNPTQCEAITMVAAQVMGNDTTINIAASQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKMTNL
>NC_003212.1|WP_003769851.1|2361936_2362731_-|ABC-transporter-permease-subunit
MTHFSALLGKEWLEQRRSLRIIWMPIVFALLGLTQPLMLYFLPEILKAVGTGAEAEQVVALMGNQSAQEVMSQTLGSQFDQIGVIIMIVAAMACIQNDRSRGMLAFIMTRPVSAVEYVLSKWVMQCIVGLSSLFIGYVLAAYYTYFLFGDLDMNSLIEGFFVYALWFVFVISLVVFASAVFDSNAVVAMISVFTAILLGVISGFGGWIQMFNPAYLSKNATMLIMSEKTMDYFIPTLFISIAWIALLIILTIVMIKIKPLQKTE
>NC_003212.1|WP_010991130.1|2362730_2363633_-|ABC-transporter-ATP-binding-protein
MKKLEIQGLKKKYNGKWVIKGIDLTINNKECVALIGPNGAGKSTMINMIVQILAQDEGQIKLDGQEAKLVREKIGFLPQYPEFYGWMSALECLRFMGKLSNMKKQDLEERIKEVLLLVGLADSTNKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSALDPIGRREIIVLLEKLKSEMTILFSTHILKDAEEICDRIAIIKNGELVADKTVEQLMQEESSPVFDVEFIGDEEAWLALLNQNKDIEKIEKVGMVYQVYAIDKKAGSEAILEALLKTKGELIRVENRHQSLEEIFMEKVR
>NC_003212.1|WP_003763578.1|2363632_2363830_-|PLDc-N-terminal-domain-containing-protein
MDKTQIALLIPVIILYLALLLTAIIDLAKNWQTRKNPIIWLIVIIFINIFGPIAYFIFGRKEDES
>NC_003212.1|WP_003769860.1|2363935_2366080_-|penicillin-binding-protein-1A
MDKFKQQLIKYIKSFFGFIGKWISTLWRKFRRFWKNKHIGKIFLLAGLVFLLSFIIYLVVVAKSADIDALKKGLESATIVYDKDGDKAGELSSTDATFVSIDKISKNLQNAVVSIEDRRFYEHKGFDLKGIARAGVNLITNGGISGGGSTITQQLAKNALLTQEQTFTRKAKEIFMAREIEKTYSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKPAADLNIPEAATIAGLLQAPSAYDPYQHIEKATNRRNMVLNAMVETGDITKAEGDKYKATKIVLNDQSKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSLEKVYNNDSLFPRNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFNRATQMKAQPGSTMKPLAVYTPALQSGYNVDSMLKDEKVTYKGNYTPTNVGGIYNGEVPMYKAVANSINAPAVWLLDQIGIDKGVKSVEKFGIEVPEKDQTLGLALGGMSKGASPVEMATAYATFANNGAKPESHIITKIVDPSGNTVYENVPKTKQIISKTVSTEMTSMLLDVINTGTGQSAAVSGHEMAGKTGSTQVPFNDTNGTKDQWFVGYTPNLVGAVWMGFDKTDKDHYLTTTSSAGVSSLAHYVMNSGLRYQKSADFDTKSAAQETAAKKQEEESDNNSGSDFWSGVKDKAGEAGETIKKGAEKVKEFGGKVSDGIGNLIDSIGN
>NC_003212.1|WP_003768022.1|2366403_2366829_+|low-molecular-weight-phosphatase-family-protein
MTQKLIYFLSQTHIRSAIAEAWAKKLSLSNVKFISGSWHKSKATPFIAEALNEFAIEPPESLSYSPSSELLADADLIVTIYDSAHETAPQFPANIQEKIIYWDIDDPEQEIALPKKWASYQEVCDNIALSVKNLEHVLIEA
>NC_003212.1|WP_003768024.1|2366891_2367761_+|cation-transporter
MDGYNDLKKAEKAAFLSIFAYLFLSVLKIAAGHFGNSDALLADGLNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTETISSLIASIIMFLVGVQVIWSSIVHIIEKEFTAPSMLTAIVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAFVSFGAFIGIIGAVLGVPWLDSVTAFLVGVLIVYTAVKIFYDAAHTLTDGFDVSKLETIHDLIASVPDVKKVIDIKARMNGNRIWIDATIAVDPDLNVVKSHEITEIVEQKIRNEYEGAFTLVHIEPFFE

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Crispr_ID: NC_003212_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003212_3

2768992-2769687

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

10 spacers

csn2,cas9

The CRISPR arrays of NC_003212_3

>merge|NC_003212|3|2768992-2769687|CRISPRCasFinder,CRT,PILER-CR
TGGTTTTTAGTATTCGAAATAGCATAGCTCTAAAACTATTGCATAGATACTAATGTTTCCACTTGTGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACAACATGAACAGAGATTCAGCATCGTTGCTAGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTTGTATTATTTTGGTGATTGCCTTTCTGTAGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTTTTCCGAGCGCTGCATCTTTTATACTGTTGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACCTTGCTTCTCTTGTTGTTCCTCTATCCATTGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACATTTATTATGAGTTTGGGACTGGTGAGAAAGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTATAATGAGTTAGATGGCATTATATGCGACGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTCGACGATTTAACAGATTTTACAGATGCTTGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACATAATGCAGTAAATAAAGAAATACTTTGCAGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTATCCTAGGCAAAGTTACCAAAGCGCTACGGTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_003212|3|3|2768992-2769687|CRISPRCasFinder
TGGTTTTTAGTATTCGAAATAGCATAGCTCTAAAAC	TATTGCATAGATACTAATGTTTCCACTTGT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	AACATGAACAGAGATTCAGCATCGTTGCTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTATTATTTTGGTGATTGCCTTTCTGTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCCGAGCGCTGCATCTTTTATACTGTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	CTTGCTTCTCTTGTTGTTCCTCTATCCATT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATTATGAGTTTGGGACTGGTGAGAAA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATAATGAGTTAGATGGCATTATATGCGAC
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TCGACGATTTAACAGATTTTACAGATGCTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATAATGCAGTAAATAAAGAAATACTTTGCA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATCCTAGGCAAAGTTACCAAAGCGCTACG
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_003212|3|1|2768992-2769687|CRT
TGGTTTTTAGTATTCGAAATAGCATAGCTCTAAAAC	TATTGCATAGATACTAATGTTTCCACTTGT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	AACATGAACAGAGATTCAGCATCGTTGCTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTATTATTTTGGTGATTGCCTTTCTGTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCCGAGCGCTGCATCTTTTATACTGTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	CTTGCTTCTCTTGTTGTTCCTCTATCCATT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATTATGAGTTTGGGACTGGTGAGAAA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATAATGAGTTAGATGGCATTATATGCGAC
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TCGACGATTTAACAGATTTTACAGATGCTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATAATGCAGTAAATAAAGAAATACTTTGCA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATCCTAGGCAAAGTTACCAAAGCGCTACG
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_003212|3|1|2769058-2769687|PILER-CR
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	AACATGAACAGAGATTCAGCATCGTTGCTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTATTATTTTGGTGATTGCCTTTCTGTA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCCGAGCGCTGCATCTTTTATACTGTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	CTTGCTTCTCTTGTTGTTCCTCTATCCATT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATTATGAGTTTGGGACTGGTGAGAAA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATAATGAGTTAGATGGCATTATATGCGAC
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TCGACGATTTAACAGATTTTACAGATGCTT
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	ATAATGCAGTAAATAAAGAAATACTTTGCA
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	TATCCTAGGCAAAGTTACCAAAGCGCTACG
GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003212.1\|WP_041918408.1\|2768086_2768452_-\|membrane-lipoprotein-lipid-attachment-site-containing-protein	unknown	unknown	gnl\|CDD\|369706
NC_003212.1\|WP_003772949.1\|2780339_2781239_+\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NC_003212.1\|WP_010991370.1\|2776947_2777745_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_003212.1\|WP_003764107.1\|2776195_2776942_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_003212.1\|WP_010991366.1\|2767543_2767966_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_003212.1\|WP_010991369.1\|2770706_2774711_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_003212.1\|WP_003764109.1\|2777747_2778614_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NC_003212.1\|WP_010991359.1\|2753935_2755417_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_003212.1\|WP_049781568.1\|2769813_2770440_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NC_003212.1\|WP_041918409.1\|2768471_2768951_-\|hypothetical-protein	unknown	unknown	unknown
NC_003212.1\|WP_010991362.1\|2757202_2757739_-\|matrixin-family-metalloprotease	unknown	unknown	gnl\|CDD\|334067
NC_003212.1\|WP_010991360.1\|2755517_2756405_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_003212.1\|WP_003764106.1\|2775563_2776001_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_003212.1\|WP_003726075.1\|2775149_2775542_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_003212.1\|WP_010991363.1\|2763808_2764837_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_003212.1\|WP_010991365.1\|2766670_2767522_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NC_003212.1\|WP_010991364.1\|2765100_2766627_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NC_003212.1\|WP_010991361.1\|2756538_2757186_-\|hypothetical-protein	unknown	unknown	unknown
NC_003212.1\|WP_010991371.1\|2778589_2779429_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184195
NC_003212.1\|WP_003772952.1\|2779559_2780222_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204

Protein	Function_ID	Function_description	E-value
NC_003212.1\|WP_041918408.1\|2768086_2768452_-\|membrane-lipoprotein-lipid-attachment-site-containing-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000899609
NC_003212.1\|WP_003772949.1\|2780339_2781239_+\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	8.64118e-126
NC_003212.1\|WP_010991370.1\|2776947_2777745_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.23591e-54
NC_003212.1\|WP_003764107.1\|2776195_2776942_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	8.5782e-126
NC_003212.1\|WP_010991369.1\|2770706_2774711_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_003212.1\|WP_010991371.1\|2778589_2779429_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184195	PRK13635, cbiO, energy-coupling factor ABC transporter ATP-binding protein.	5.88594e-180
NC_003212.1\|WP_010991359.1\|2753935_2755417_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.79331e-107
NC_003212.1\|WP_049781568.1\|2769813_2770440_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.29935e-110
NC_003212.1\|WP_010991366.1\|2767543_2767966_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.06904e-43
NC_003212.1\|WP_010991362.1\|2757202_2757739_-\|matrixin-family-metalloprotease	gnl\|CDD\|334067	pfam00413, Peptidase_M10, Matrixin. The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.	7.7733e-09
NC_003212.1\|WP_010991360.1\|2755517_2756405_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.02491e-16
NC_003212.1\|WP_003764106.1\|2775563_2776001_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.2642e-101
NC_003212.1\|WP_003726075.1\|2775149_2775542_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.78102e-86
NC_003212.1\|WP_010991363.1\|2763808_2764837_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.22157e-113
NC_003212.1\|WP_010991365.1\|2766670_2767522_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	7.12758e-166
NC_003212.1\|WP_010991364.1\|2765100_2766627_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	3.13526e-72
NC_003212.1\|WP_003764109.1\|2777747_2778614_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NC_003212.1\|WP_003772952.1\|2779559_2780222_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	5.17064e-71

>NC_003212.1|WP_041918409.1|2768471_2768951_-|hypothetical-protein
MKERSQHMTQYHYLASKAALKTTTHENKTDFVYQNDLDFLSLNFEENIDERTNEKFSYSKYFNPTCNFQVAISEGKLPLKGEEQNNDYESKSLKILHDYIKKASKESDTLELYTSWNGEENFPLTNKTELAIENLTPENLILRDRELLIIKNKTFTYTT
>NC_003212.1|WP_041918408.1|2768086_2768452_-|membrane-lipoprotein-lipid-attachment-site-containing-protein
MKKTSIIFILCITLLLTACSTTEKQTKIEYTEATGIIEQVETNAILINNFKEKNDKDNPESVIRFGIVDKYYDKNGNKIKLTELNKNDNVKIILTKDYPIQETSPGQIDPKYIQKIILLNK
>NC_003212.1|WP_010991366.1|2767543_2767966_-|MerR-family-transcriptional-regulator
MNIKQAAEMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKSLRNAGLSVESLIEFATLAQLRETENVEAAQKQVLIDQLKELDEKLAEMKQVRDLLVYKIDTYDSHIAQFKTGELTADNVEKLWERDKF
>NC_003212.1|WP_010991365.1|2766670_2767522_-|aldo/keto-reductase
MKTVKLNNGIEVPILGFGTYQITDAGEAEQAVKEAIAAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYIDLLLIHQPYNDVYGAWMAMEELQAQGKIKAIGVSNFGVDRVVDLAAFNDITPQVNQIEINPFQQQSKNIEALRKEGVAVEAWAPFAEGKNDIFTNPILTKIAEKYGKSVAQVILRWLIEQDIIVLAKSVKPERMAQNLAVFDFELSEEDKSAIATLNQGESQFFSHADPEMVKWMASRKINI
>NC_003212.1|WP_010991364.1|2765100_2766627_+|GW-domain-containing-glycosaminoglycan-binding-protein
MERKFIKPGIILLIVAFLVVSLNVGAETGNSRVAQNSLTSSQQAFIDEILPAAEDGYRDGKLLTSVTLAQAILESNWGKSGLSKNSNNLFGIKGQYEGKSISMGTMEASGATTADFRVYPSWKESIEDHTNLITQNARYQGAVGETDYRKALQAIKDGGYATAPDYVSKLVAIIERYNLDQYDVVYDKIEYQNKIAAIGTVNANKEQETIWSAPFNTTNSEEVGTLANYTNRNLEISWEAKTEKGLWYFLRENNKDIGWVNSSALTLSYHQNNDENVDTTKYVDDLNAHIYRLPNPEQQFDNGTIAKYDRKALHADKKITRDGYAWFRLSESSKVIGWVRSDKLNDRLYDRITEQNSFDGYATVSKSATDNVWSAPFNTKNAEKLAPLSDYDTQKLELVTRAKVGNTLWYEFKIDGEVVGWVSEKDVNIIYTPEAEKPITQVSYLKNPAAMLYNKPVEATSAETKAVGFYYGKLLIVDKEATIQDEQWVHIKENNNSLGWIKATDIQS
>NC_003212.1|WP_010991363.1|2763808_2764837_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGILEVQVLGESANIKIALADPAIETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSETSQTKFLAIASGKGGVGKSTVAANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQIIPVETNGIQMISMDFFVESGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNEIIVTTPHFAAASVASRAGYMASKNNHNIIGVIENMSYLKLEDGQTLKIFGQGGGEKVAADLETQLLIQLPIEQPDFNGNGYTSAIYSESSEAGKAYKTLAEKIIPYLL
>NC_003212.1|WP_010991362.1|2757202_2757739_-|matrixin-family-metalloprotease
MRKKTAVTILLFIVLLTTILMPTNANAYTKLGYSLSKSNAKNFKFYINGSAMGYKNIIINGAKSWNASPYLNTVSKGRDANPHFIISSSTIDRGATVAVCETWAYKGSKLVAKNEITTFKAFRSLSVGDKTETIAHEFGHGLGLGHVKTKNAIMLDVGFTKKIKPQRDDLNGIKAIYK
>NC_003212.1|WP_010991361.1|2756538_2757186_-|hypothetical-protein
MKKSIIVIIGLVSIVGLTGCTNNKNINEKQIVGKEIEKVEQKSSIVSCDGKYLDLAENIEELEESSPIIVTVTKRSEKKSITKESKNSNVPTEFYTMSEVVINNIEKDETKTLEENKTIKVLEDSVENVKIDGQEYDLTIDGYKNMKEDEEYTLFIRKSTSGDNYVLTNAMLSKYPVAELSESELFLENEENKEEAIDMKDTYKDIYKEVLSDYN
>NC_003212.1|WP_010991360.1|2755517_2756405_-|TetR/AcrR-family-transcriptional-regulator
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMALDGTKKNNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFASGSKNVDSGLIERAIPYVVRRLDALVKDILESGEIIFTEADTENLVPDQTMIRKKRLAKLREALEELNVGIENADIADSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPATLTKEVNKLEACVNGLL
>NC_003212.1|WP_010991359.1|2753935_2755417_-|multidrug-efflux-MFS-transporter
MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATALPMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTIISSVAGSFPILLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAIGPTLSGWIVDSYDWRVLFIILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIGFGALLYGFSSAGNDGWGDATVITTLIIGVVVIALFVWRQLVIENPMLELHVFKYPVFSLSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFDKIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMNALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKAQDASLDGMRAAFMVAAIFAALGMILSLFLKNKKQEPIVKEYTK
>NC_003212.1|WP_049781568.1|2769813_2770440_-|type-II-A-CRISPR-associated-protein-Csn2
MIEDSTIFAIEDVRVFANVTKWLYQYDETEELTIFGAKQQPLKSSELMLITDVLGHDINSLATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVFINVCAYLTEDELLELRRYVSLNQVKVLFVEPRKTEGFSQVILDSDYFLQVEKGM
>NC_003212.1|WP_010991369.1|2770706_2774711_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKIAGDSEKKQIKKNFWGVRLFDEGQTAADRRMARTARRRIERRRNRISYLQGIFAEEMSKTDANFFCRLSDSFYVDNEKRNSRHPFFATIEEEVEYHKNYPTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTQNTSVDGIYKQFIQTYNQVFASGIEDGSLKKLEDNKDVAKILVEKVTRKEKLERILKLYPGEKSAGMFAQFISLIVGSKGNFQKPFDLIEKSDIECAKDSYEEDLESLLALIGDEYAELFVAAKNAYSAVVLSSIITVAETETNAKLSASMIERFDTHEEDLGELKAFIKLHLPKHYEEIFSNTEKHGYAGYIDGKTKQADFYKYMKMTLENIEGADYFIAKIEKENFLRKQRTFDNGAIPHQLHLEELEAILHQQAKYYPFLKENYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYLVYNELTKVRYINDQGKTSYFSGQEKEQIFNDLFKQKRKVKKKDLELFLRNMSHVESPTIEGLEDSFNSSYSTYHDLLKVGIKQEILDNPVNTEMLENIVKILTVFEDKRMIKEQLQQFSDVLDGVVLKKLERRHYTGWGRLSAKLLMGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVTTADKDIQSIVADLAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTGKGKNNSRPRYKSLEKAIKEFGSQILKEHPTDNQELRNNRLYLYYLQNGKDMYTGQDLDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGDDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYEKDDHGNTMKQVRIVTLKSALVSQFRKQFQLYKVRDVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGDYHQFDWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKKYLDTVKKVMSYRQMNIVKKTEIQKGEFSKATIKPKGNSSKLIPRKTNWDPMKYGGLDSPNMAYAVVIEYAKGKNKLVFEKKIIRVTIMERKAFEKDEKAFLEEQGYRQPKVLAKLPKYTLYECEEGRRRMLASANEAQKGNQQVLPNHLVTLLHHAANCEVSDGKSLDYIESNREMFAELLAHVSEFAKRYTLAEANLNKINQLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFETTIERKRYNNLKELLNSTIIYQSITGLYESRKRLDD
>NC_003212.1|WP_003726075.1|2775149_2775542_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR
>NC_003212.1|WP_003764106.1|2775563_2776001_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQKPEVYELRG
>NC_003212.1|WP_003764107.1|2776195_2776942_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEAPADFHARFGTVGKEYRYVIKRTKIFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAPPQGLYLWRVDYE
>NC_003212.1|WP_010991370.1|2776947_2777745_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMEKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTCLLISLAVLSGLLFWLRS
>NC_003212.1|WP_003764109.1|2777747_2778614_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLKIGSPREIFAKPDELVDLGLSVPDVVRFQGLFERKFNVKLTKTCLTIAELTAEMAPYLAKGGA
>NC_003212.1|WP_010991371.1|2778589_2779429_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWEIRRQVGMVFQNPDNQFVGATVQDDVAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNNGEIHSEGTPKEIFEQADAMRAIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLNSNN
>NC_003212.1|WP_003772952.1|2779559_2780222_+|MgtC/SapB-family-protein
MLADFILRLVVAGLLGAVIGLDREIRAKEAGFRTHFLVSLGSALIMIVSQYGFSEIATMQTVSFDPSRVAAQVVSGIGFIGAGTIIIQKKFVRGLTTAAGLWATAGIGLAVGAGMYWVGIAATLLTLIGLEFLSIVFKSVSLHTTSLIYSTDKQENLVKITDKIQQNKQQIISYSSEKELVGKSLFIRVNIVVKTKNKNDEYELFHFIQTLPDVTIEKME
>NC_003212.1|WP_003772949.1|2780339_2781239_+|acetamidase/formamidase-family-protein
MKNFVTSERSIHKMDESAKPVLTVKDGSVVTIKIKDHFNGQINKEQLHYGEIDWKQFSPTTGPICIEEARPGDLLAVTIEKITLTSKDVVLLNGPTIGVTDDLLPNNCIRRYKIKQNKIIYSDEIHVQLQKTIGLLKTESIHQTKPFHMPTKHGGTLDSPDITEGATIFLPVEKFGAMLHVADIRATTGFGKTTSTSAEVPAEVTLRLQLLKNKTAPTPIIIHKNNLICLGSELTTEKATKKALQNMLNVLMESDKITLEDAIFLLSLQADFEVCRLNKANVTTSIKLPLSSFPEMPFL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_003212_3	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	NC_003212.1	1724747-1724776	0	1.0

1. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to position: 1724747-1724776, mismatch: 0, identity: 1.0

ttttccgagcgctgcatcttttatactgtt	CRISPR spacer
ttttccgagcgctgcatcttttatactgtt	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003212_3	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	MH341453	Listeria phage PSU-VKH-LP041, complete genome	15243-15272	0	1.0
NC_003212_3	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	NC_009813	Listeria phage B054, complete genome	15243-15272	0	1.0
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	FW590635	JP 2010534058-A/45: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	563-592	1	0.967
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	NC_003216	Listeria phage A118, complete genome	24073-24102	1	0.967
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	AJ242593	Bacteriophage A118 complete genome	24073-24102	1	0.967
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	HI504206	Sequence 48 from Patent EP2147092	563-592	1	0.967
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	DQ003637	Listeria phage A500, complete genome	28174-28203	1	0.967
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	KP399677	Listeria phage vB_LmoS_188, complete genome	27826-27855	1	0.967
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	KP399678	Listeria phage vB_LmoS_293, complete genome	29195-29224	1	0.967
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	1046-1075	2	0.933
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	HI504184	Sequence 26 from Patent EP2147092	1046-1075	2	0.933
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	AJ417489	bacteriophage U153 int gene for U153 integrase	1046-1075	2	0.933
NC_003212_3	3.2\|2769094\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769094-2769123	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	23179-23208	2	0.933
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	28569-28598	2	0.933
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	KJ094022	Listeria phage LP-030-3, complete genome	37558-37587	2	0.933
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NC_003216	Listeria phage A118, complete genome	30130-30159	3	0.9
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	AJ242593	Bacteriophage A118 complete genome	30130-30159	3	0.9
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694110	Marine virus AFVG_250M1083, complete genome	17761-17790	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694108	Marine virus AFVG_250M1116, complete genome	14969-14998	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694734	Marine virus AFVG_250M466, complete genome	16455-16484	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN693696	Marine virus AFVG_250M1082, complete genome	21804-21833	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694066	Marine virus AFVG_250M1081, complete genome	21777-21806	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN693882	Marine virus AFVG_250M174, complete genome	21999-22028	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN693875	Marine virus AFVG_250M965, complete genome	22022-22051	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694418	Marine virus AFVG_250M966, complete genome	22210-22239	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN693674	Marine virus AFVG_250M120, complete genome	23016-23045	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694481	Marine virus AFVG_250M175, complete genome	21973-22002	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694272	Marine virus AFVG_250M1166, complete genome	23150-23179	5	0.833
NC_003212_3	3.1\|2769028\|30\|NC_003212\|CRISPRCasFinder,CRT	2769028-2769057	30	MN694004	Marine virus AFVG_250M467, complete genome	22132-22161	5	0.833
NC_003212_3	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	NZ_CP023158	Xanthomonas citri pv. malvacearum strain AR81009 plasmid unnamed3, complete sequence	6226-6255	5	0.833
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	KY653129	Staphylococcus phage IME1365_01, complete genome	3857-3886	5	0.833
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	KU598975	Staphylococcus phage CNPx, complete genome	31596-31625	5	0.833
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NC_008723	Staphylococcus phage PH15, complete genome	32813-32842	5	0.833
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	581264-581293	5	0.833
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	NZ_CP020429	Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence	187207-187236	5	0.833
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	136518-136547	5	0.833
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	MN480763	Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence	20179-20208	5	0.833
NC_003212_3	3.3\|2769160\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769160-2769189	30	NZ_CP028100	Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence	12833-12862	6	0.8
NC_003212_3	3.3\|2769160\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769160-2769189	30	NZ_CP028100	Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence	66820-66849	6	0.8
NC_003212_3	3.3\|2769160\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769160-2769189	30	NC_005232	Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence	12833-12862	6	0.8
NC_003212_3	3.3\|2769160\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769160-2769189	30	NC_005232	Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence	67551-67580	6	0.8
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	MG969427	Anoxybacillus phage A403, complete genome	34808-34837	6	0.8
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	537557-537586	6	0.8
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	302971-303000	6	0.8
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	303011-303040	6	0.8
NC_003212_3	3.10\|2769622\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769622-2769651	30	KX196154	Shewanella phage SFCi1, complete genome	11770-11799	6	0.8
NC_003212_3	3.10\|2769622\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769622-2769651	30	LR743530	Xanthomonas phage Suba genome assembly, chromosome: 1	14341-14370	6	0.8
NC_003212_3	3.3\|2769160\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769160-2769189	30	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	43878-43907	7	0.767
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	313930-313959	7	0.767
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	AP013754	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, * SEQUENCING IN PROGRESS *	20651-20680	7	0.767
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	80854-80883	7	0.767
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	281565-281594	7	0.767
NC_003212_3	3.5\|2769292\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769292-2769321	30	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	455154-455183	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP026282	Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence	40478-40507	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP037735	Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence	133654-133683	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	CP045556	Citrobacter sp. S39 plasmid pS39-1, complete sequence	186583-186612	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP045203	Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence	75600-75629	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP022152	Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence	216595-216624	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP030224	Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence	168427-168456	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP041248	Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence	228081-228110	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP011611	Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence	168736-168765	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	CP052139	Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence	219857-219886	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_MG387191	Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence	190725-190754	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP011133	Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence	47013-47042	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	25186-25215	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP026058	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence	168485-168514	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	203185-203214	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	323840-323869	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP018017	Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence	48936-48965	7	0.767
NC_003212_3	3.6\|2769358\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769358-2769387	30	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	295039-295068	7	0.767
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	47470-47499	7	0.767
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	90796-90825	7	0.767
NC_003212_3	3.8\|2769490\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769490-2769519	30	MN694515	Marine virus AFVG_250M511, complete genome	25319-25348	7	0.767
NC_003212_3	3.7\|2769424\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769424-2769453	30	KP211958	Cyanophage P-TIM40, complete genome	6044-6073	8	0.733
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	242366-242395	8	0.733
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	840996-841025	8	0.733
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	808-837	8	0.733
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	LC492751	Staphylococcus phage KSAP7 genomic DNA, compelete genome	75474-75503	9	0.7
NC_003212_3	3.9\|2769556\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769556-2769585	30	LC492752	Staphylococcus phage KSAP11 genomic DNA, compelete genome	75294-75323	9	0.7

1. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

ttttccgagcgctgcatcttttatactgtt	CRISPR spacer
ttttccgagcgctgcatcttttatactgtt	Protospacer
******************************

2. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

ttttccgagcgctgcatcttttatactgtt	CRISPR spacer
ttttccgagcgctgcatcttttatactgtt	Protospacer
******************************

3. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to FW590635 (JP 2010534058-A/45: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 1, identity: 0.967

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aacatgaatagagattcagcatcgttgcta	Protospacer
********.*********************

4. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aacatgaatagagattcagcatcgttgcta	Protospacer
********.*********************

5. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aacatgaatagagattcagcatcgttgcta	Protospacer
********.*********************

6. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to HI504206 (Sequence 48 from Patent EP2147092) position: , mismatch: 1, identity: 0.967

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aacatgaatagagattcagcatcgttgcta	Protospacer
********.*********************

7. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgttcctcaatccatt	Protospacer
********************** *******

8. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 1, identity: 0.967

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgttcctcaatccatt	Protospacer
********************** *******

9. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.967

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttttcttgttgttcctctatccatt	Protospacer
*******.**********************

10. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 2, identity: 0.933

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aatatgaatagagattcagcatcgttgcta	Protospacer
**.*****.*********************

11. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 2, identity: 0.933

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aatatgaatagagattcagcatcgttgcta	Protospacer
**.*****.*********************

12. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 2, identity: 0.933

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aatatgaatagagattcagcatcgttgcta	Protospacer
**.*****.*********************

13. spacer 3.2|2769094|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.933

aacatgaacagagattcagcatcgttgcta	CRISPR spacer
aatatgaatagagattcagcatcgttgcta	Protospacer
**.*****.*********************

14. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.933

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgctcctcaatccatt	Protospacer
****************.***** *******

15. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.933

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgctcctcaatccatt	Protospacer
****************.***** *******

16. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 3, identity: 0.9

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgctcctcaatccact	Protospacer
****************.***** *****.*

17. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 3, identity: 0.9

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttctcttgttgctcctcaatccact	Protospacer
****************.***** *****.*

18. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694110 (Marine virus AFVG_250M1083, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

19. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694108 (Marine virus AFVG_250M1116, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

20. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694734 (Marine virus AFVG_250M466, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

21. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN693696 (Marine virus AFVG_250M1082, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

22. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694066 (Marine virus AFVG_250M1081, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

23. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN693882 (Marine virus AFVG_250M174, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

24. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN693875 (Marine virus AFVG_250M965, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

25. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694418 (Marine virus AFVG_250M966, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

26. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN693674 (Marine virus AFVG_250M120, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

27. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694481 (Marine virus AFVG_250M175, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

28. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694272 (Marine virus AFVG_250M1166, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

29. spacer 3.1|2769028|30|NC_003212|CRISPRCasFinder,CRT matches to MN694004 (Marine virus AFVG_250M467, complete genome) position: , mismatch: 5, identity: 0.833

tattgcatagatactaatgtttccacttgt	CRISPR spacer
ctgtgcatcgatagtaatgtttccacttgt	Protospacer
.  ***** **** ****************

30. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023158 (Xanthomonas citri pv. malvacearum strain AR81009 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.833

ttttccgagcgctgcatcttttatactgtt-	CRISPR spacer
ttttccgagcgctgcagctttcat-ctgcgc	Protospacer
**************** ****.** ***.

31. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 5, identity: 0.833

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gttgtttctctttttgttcctctatccaaa	Protospacer
 ***.******* ***************

32. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KU598975 (Staphylococcus phage CNPx, complete genome) position: , mismatch: 5, identity: 0.833

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gttgtttctctttttgttcctctatccaaa	Protospacer
 ***.******* ***************

33. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_008723 (Staphylococcus phage PH15, complete genome) position: , mismatch: 5, identity: 0.833

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gttgtttctctttttgttcctctatccaaa	Protospacer
 ***.******* ***************

34. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 5, identity: 0.833

tcgacg--atttaacagattttacagatgctt	CRISPR spacer
--aacgttttttaacagattttacacatgctt	Protospacer
  .***   **************** ******

35. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
ataatgcagtaaataatgacatactttttt	Protospacer
**************** ** ******* .

36. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 5, identity: 0.833

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
ataatgcagtaaataatgacatactttttt	Protospacer
**************** ** ******* .

37. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MN480763 (Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence) position: , mismatch: 5, identity: 0.833

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
ataatgcagtaaataatgacatactttttt	Protospacer
**************** ** ******* .

38. spacer 3.3|2769160|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028100 (Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence) position: , mismatch: 6, identity: 0.8

ttgtattattttggtgattgcctttctgta	CRISPR spacer
gagtattattttagtgatttcctttctaaa	Protospacer
  **********.****** *******. *

39. spacer 3.3|2769160|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028100 (Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence) position: , mismatch: 6, identity: 0.8

ttgtattattttggtgattgcctttctgta	CRISPR spacer
gagtattattttagtgatttcctttctaaa	Protospacer
  **********.****** *******. *

40. spacer 3.3|2769160|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_005232 (Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence) position: , mismatch: 6, identity: 0.8

ttgtattattttggtgattgcctttctgta	CRISPR spacer
gagtattattttagtgatttcctttctaaa	Protospacer
  **********.****** *******. *

41. spacer 3.3|2769160|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_005232 (Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence) position: , mismatch: 6, identity: 0.8

ttgtattattttggtgattgcctttctgta	CRISPR spacer
gagtattattttagtgatttcctttctaaa	Protospacer
  **********.****** *******. *

42. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 6, identity: 0.8

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcttttcttgttgtttctcttttggtt	Protospacer
*******.**********.**** *. .**

43. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 6, identity: 0.8

tcgacg--atttaacagattttacagatgctt	CRISPR spacer
--aacgttttttaatagattttacacatgctt	Protospacer
  .***   *****.********** ******

44. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.8

tcgacg--atttaacagattttacagatgctt	CRISPR spacer
--aacgttttttaatagattttacacatgctt	Protospacer
  .***   *****.********** ******

45. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.8

tcgacg--atttaacagattttacagatgctt	CRISPR spacer
--aacgttttttaatagattttacacatgctt	Protospacer
  .***   *****.********** ******

46. spacer 3.10|2769622|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KX196154 (Shewanella phage SFCi1, complete genome) position: , mismatch: 6, identity: 0.8

tatcctaggcaaagttaccaaagcgctacg	CRISPR spacer
cttaaaaggcaaagttaccaaagcgctgcg	Protospacer
. *   *********************.**

47. spacer 3.10|2769622|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to LR743530 (Xanthomonas phage Suba genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.8

tatcctag-gcaaagttaccaaagcgctacg	CRISPR spacer
-accctgattcaaacttaccaaagcgctacg	Protospacer
 *.***..  **** ****************

48. spacer 3.3|2769160|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 7, identity: 0.767

ttgtattattttggtgattgcctttctgta	CRISPR spacer
ctatgagattttggtaattgcctttcttta	Protospacer
.*.*.  ********.*********** **

49. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 7, identity: 0.767

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gtaacttctcttgtggttcctctatactct	Protospacer
 * .********** ********** * .*

50. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to AP013754 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
cttgcgtctcttgtttttcctcttttgcct	Protospacer
***** ********* ******* *.  .*

51. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gtaacttctcttgtggttcctctatactct	Protospacer
 * .********** ********** * .*

52. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 7, identity: 0.767

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gtaacttctcttgtggttcctctatactct	Protospacer
 * .********** ********** * .*

53. spacer 3.5|2769292|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.767

cttgcttctcttgttgttcctctatccatt	CRISPR spacer
gtaacttctcttgtggttcctctatactct	Protospacer
 * .********** ********** * .*

54. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026282 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

55. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037735 (Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

56. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to CP045556 (Citrobacter sp. S39 plasmid pS39-1, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

57. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045203 (Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

58. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

59. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030224 (Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

60. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041248 (Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

61. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011611 (Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

62. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to CP052139 (Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

63. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG387191 (Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

64. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011133 (Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

65. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

66. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026058 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

67. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

68. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

69. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018017 (Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

70. spacer 3.6|2769358|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 7, identity: 0.767

atttattatgagtttgggactggtgagaaa	CRISPR spacer
gggtattatgggtttgcgactggtgatgaa	Protospacer
.  *******.***** ********* .**

71. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 7, identity: 0.767

tcgacgatttaacagattttacagatgctt	CRISPR spacer
ttcgtgatttaacagagtttacaaatgctg	Protospacer
*. ..*********** ******.*****

72. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 7, identity: 0.767

tcgacgatttaacagattttacagatgctt	CRISPR spacer
ttcgtgatttaacagagtttacaaatgctg	Protospacer
*. ..*********** ******.*****

73. spacer 3.8|2769490|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to MN694515 (Marine virus AFVG_250M511, complete genome) position: , mismatch: 7, identity: 0.767

tcgacgatttaacagattttacagatgctt	CRISPR spacer
aagaatatttaacggattttagagatgcta	Protospacer
  **  *******.******* *******

74. spacer 3.7|2769424|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 8, identity: 0.733

tataatgagttagatggcattatatgcgac	CRISPR spacer
cgtagtgagttagatgacattatattggga	Protospacer
..**.***********.********  *.

75. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 8, identity: 0.733

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
tgaatgcagtaaataaataaattctcaaaa	Protospacer
  *************** **** **. . *

76. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 8, identity: 0.733

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
tgaatgcagtaaataaataaattctcaaaa	Protospacer
  *************** **** **. . *

77. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
ataatgcagttaataaacaaataaaagaaa	Protospacer
********** ****** *****    . *

78. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to LC492751 (Staphylococcus phage KSAP7 genomic DNA, compelete genome) position: , mismatch: 9, identity: 0.7

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
gtaaagcattaaataaagaaataccacaac	Protospacer
.*** *** ***************. ..

79. spacer 3.9|2769556|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to LC492752 (Staphylococcus phage KSAP11 genomic DNA, compelete genome) position: , mismatch: 9, identity: 0.7

ataatgcagtaaataaagaaatactttgca	CRISPR spacer
gtaaagcattaaataaagaaataccacaac	Protospacer
.*** *** ***************. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74987 : 163605

106

Listeria_phage(87.32%)

integrase,tail,plate,portal,terminase,holin,capsid

attL 69938:69954|attR 153845:153861

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
69938:69954	attL	NA	NA	NA	NA
WP_010990187.1\|74987_75944_+	2-hydroxyacid dehydrogenase family protein	M1H502	Paramecium_bursaria_Chlorella_virus	3.8e-31	28.1
WP_010990188.1\|76208_77411_-\|integrase	site-specific integrase	A0A059T666	Listeria_phage	1.9e-221	99.2
WP_010990189.1\|77475_78126_-	hypothetical protein	NA	NA	NA	NA
WP_041918345.1\|78180_78348_-	hypothetical protein	NA	NA	NA	NA
WP_010990190.1\|78504_78981_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	2.7e-38	59.2
WP_026747215.1\|79153_79357_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010990191.1\|79377_79644_+	hypothetical protein	A0A059T7Q1	Listeria_phage	1.2e-40	98.9
WP_003727745.1\|79868_80063_+	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
WP_003733634.1\|80074_80311_+	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_010990192.1\|80307_80589_+	hypothetical protein	A0A0B5CTX3	Listeria_phage	3.2e-39	96.8
WP_003727748.1\|80620_80782_+	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
WP_010990193.1\|80774_81017_-	hypothetical protein	A0A059T7Q3	Listeria_phage	6.8e-38	98.8
WP_003747301.1\|81080_81854_+	phage repressor protein/antirepressor Ant	A8ATY0	Listeria_phage	2.4e-140	99.6
WP_010990194.1\|81972_82497_+	hypothetical protein	A8ATY1	Listeria_phage	3.5e-87	97.7
WP_003731816.1\|82503_82689_+	helix-turn-helix domain-containing protein	A0A059T674	Listeria_phage	1.1e-27	100.0
WP_003734954.1\|82704_82893_+	hypothetical protein	A0A0B5CU43	Listeria_phage	4.5e-29	100.0
WP_010990195.1\|83125_84085_+	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	8.1e-175	98.1
WP_010990196.1\|84084_84900_+	recombinase RecT	A0A0B5CTU3	Listeria_phage	1.7e-149	98.5
WP_010990197.1\|84920_85832_+	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	7.3e-133	87.2
WP_010990198.1\|85828_85996_+	hypothetical protein	A8ASN5	Listeria_phage	5.8e-20	92.6
WP_041918346.1\|86011_86293_+	hypothetical protein	A0A0B5CU46	Listeria_phage	1.4e-42	96.6
WP_003734949.1\|86289_87102_+	DNA adenine methylase	Q8W5X3	Listeria_phage	1.6e-152	96.3
WP_010990199.1\|87098_87728_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	1.8e-50	53.6
WP_010990200.1\|87724_88246_+	hypothetical protein	A0A059T7V5	Listeria_phage	7.8e-31	46.7
WP_010990201.1\|88372_88765_+	hypothetical protein	A0A0B5CYR4	Listeria_phage	7.2e-29	49.0
WP_003727764.1\|88761_88947_+	hypothetical protein	A0A059T5G1	Listeria_phage	4.1e-27	100.0
WP_010990202.1\|88943_89234_+	hypothetical protein	Q8W5X0	Listeria_phage	7.6e-44	90.6
WP_010990203.1\|89230_89437_+	hypothetical protein	A8ATE0	Listeria_phage	4.2e-28	93.8
WP_010990204.1\|89437_89839_+	hypothetical protein	A8ATZ6	Listeria_phage	3.6e-44	69.5
WP_010990205.1\|89835_90336_+	hypothetical protein	NA	NA	NA	NA
WP_010990206.1\|90332_90812_+	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	2.1e-75	91.2
WP_010990207.1\|90830_91013_+	hypothetical protein	A8ASP6	Listeria_phage	2.9e-17	81.0
WP_010990208.1\|90957_91362_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	7.4e-61	89.6
WP_010990209.1\|91365_91749_+	DUF2481 family protein	A0A0B5CYS3	Listeria_phage	1.4e-61	92.1
WP_010990210.1\|91889_92324_+	hypothetical protein	A8AU03	Listeria_phage	2.6e-72	94.4
WP_010990211.1\|92533_92710_+	hypothetical protein	NA	NA	NA	NA
WP_010990212.1\|92768_93032_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	1.7e-34	78.2
WP_010990213.1\|93089_93632_+\|terminase	terminase small subunit	A8ASJ1	Listeria_phage	5.4e-91	98.9
WP_010990214.1\|93600_94932_+\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.1e-259	98.6
WP_010990215.1\|94944_96714_+\|portal	phage portal protein	A8ASJ3	Listeria_phage	2.0e-267	92.2
WP_010990216.1\|96714_97854_+\|capsid	phage minor capsid protein	A0A0B5D147	Listeria_phage	1.7e-203	97.4
WP_010990217.1\|97932_98502_+	phage scaffolding protein	Q9T1B8	Listeria_phage	7.4e-91	97.4
WP_010990218.1\|98525_99425_+\|capsid	phage major capsid protein	A0A0B5CU19	Listeria_phage	1.0e-166	99.0
WP_003731734.1\|99424_99583_+	hypothetical protein	Q9T1B6	Listeria_phage	6.7e-18	94.2
WP_010990219.1\|99584_99980_+	hypothetical protein	A0A059T5E3	Listeria_phage	6.7e-67	99.2
WP_010990220.1\|99979_100342_+	hypothetical protein	A8ASJ9	Listeria_phage	2.9e-64	99.2
WP_010990221.1\|100341_100680_+\|capsid	minor capsid protein	A8ASK0	Listeria_phage	4.9e-58	100.0
WP_010990222.1\|100679_101087_+	hypothetical protein	A8ASK1	Listeria_phage	9.0e-67	100.0
WP_010990223.1\|101089_101527_+	hypothetical protein	A8ASK2	Listeria_phage	2.5e-78	99.3
WP_041918347.1\|101549_101789_+	Ig-like domain-containing protein	A0A059T5E4	Listeria_phage	6.1e-31	96.2
WP_003743404.1\|101841_102264_+\|tail	phage tail assembly chaperone	A8ASK4	Listeria_phage	3.1e-70	100.0
WP_010990224.1\|102269_102872_+	bacteriophage Gp15 family protein	A8ASK5	Listeria_phage	3.7e-109	100.0
WP_010990225.1\|102882_108249_+	tape measure protein	A8ASK6	Listeria_phage	0.0e+00	88.7
WP_003743410.1\|108245_109073_+\|tail	phage tail family protein	A8ASK7	Listeria_phage	2.4e-159	100.0
WP_003743412.1\|109072_110110_+\|tail	phage tail protein	A8ASK8	Listeria_phage	2.0e-195	100.0
WP_010990226.1\|110110_111136_+	hypothetical protein	A8ASK9	Listeria_phage	2.3e-175	100.0
WP_010990227.1\|111132_112200_+\|plate	BppU family phage baseplate upper protein	A8ASL0	Listeria_phage	8.8e-162	100.0
WP_003725055.1\|112196_112538_+	hypothetical protein	A8ASL1	Listeria_phage	4.2e-57	100.0
WP_003725054.1\|112538_112685_+	XkdX family protein	A8ASL2	Listeria_phage	1.1e-19	100.0
WP_003725053.1\|112721_113087_+	hypothetical protein	A8ASL3	Listeria_phage	1.3e-11	100.0
WP_003725052.1\|113099_113381_+\|holin	holin	A8ASL4	Listeria_phage	8.2e-43	100.0
WP_010990228.1\|113380_114250_+	N-acetylmuramoyl-L-alanine amidase family protein	A8ASL5	Listeria_phage	2.5e-167	97.2
WP_010990229.1\|114274_114691_+	hypothetical protein	A0A0B5CTT3	Listeria_phage	1.4e-27	46.4
WP_041918348.1\|114964_115198_+	hypothetical protein	A0A059T6E1	Listeria_phage	5.6e-37	97.4
WP_041918349.1\|115194_115401_+	hypothetical protein	A0A059T5E7	Listeria_phage	3.1e-31	98.5
WP_003759730.1\|115715_116072_+	hypothetical protein	NA	NA	NA	NA
WP_010990230.1\|116482_117142_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_010990231.1\|117255_123096_+	hypothetical protein	NA	NA	NA	NA
WP_010990232.1\|123092_125372_+	hypothetical protein	NA	NA	NA	NA
WP_003721714.1\|125428_125671_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_010990233.1\|125682_126714_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_003772628.1\|126710_128207_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_003772625.1\|128203_129076_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_003772623.1\|129076_130447_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_003759763.1\|130459_130777_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_003772620.1\|130773_131334_+	hypothetical protein	NA	NA	NA	NA
WP_010990234.1\|131477_137459_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA
WP_003772617.1\|137620_138259_+	hypothetical protein	NA	NA	NA	NA
WP_003772614.1\|138555_139521_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_003764836.1\|139544_140351_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_003728942.1\|140372_141284_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_003728941.1\|141410_141800_+	DUF956 family protein	NA	NA	NA	NA
WP_003759782.1\|141934_142285_+	DUF2200 domain-containing protein	NA	NA	NA	NA
WP_010990235.1\|142324_143842_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_010990236.1\|143948_144242_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010990237.1\|144353_144644_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003764843.1\|144657_145290_+	nitroreductase family protein	NA	NA	NA	NA
WP_010990238.1\|145384_145756_+	hypothetical protein	NA	NA	NA	NA
WP_010990239.1\|146049_148320_+	chitinase ChiB	A0A2K9L3D4	Tupanvirus	2.0e-38	32.3
WP_003772593.1\|148359_149562_-	ATP-binding protein	NA	NA	NA	NA
WP_003772591.1\|149751_151533_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-53	31.0
WP_010990240.1\|151525_153268_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-56	30.7
WP_003772584.1\|153410_154244_+	AraC family transcriptional regulator	NA	NA	NA	NA
153845:153861	attR	NA	NA	NA	NA
WP_010990241.1\|154393_155092_+	EAL domain-containing protein	NA	NA	NA	NA
WP_010990242.1\|155061_155757_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003764863.1\|155930_156383_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	6.8e-31	45.8
WP_003764864.1\|156388_156724_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	2.3e-20	52.5
WP_010990243.1\|156942_157371_+	hypothetical protein	A8ATZ8	Listeria_phage	2.1e-13	46.9
WP_010990244.1\|157382_157799_+	hypothetical protein	A8ASQ1	Listeria_phage	2.0e-21	39.3
WP_010990245.1\|158078_158468_+	DUF5072 family protein	NA	NA	NA	NA
WP_003759830.1\|158480_158993_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	63.4
WP_003759832.1\|159040_159343_+	hypothetical protein	NA	NA	NA	NA
WP_045553690.1\|159348_159789_+	hypothetical protein	NA	NA	NA	NA
WP_010990246.1\|159775_161644_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	1.3e-19	51.6
WP_010990247.1\|161640_162459_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	1.8e-37	34.9
WP_010990248.1\|162468_163605_+\|tail	phage tail protein	A8ATA9	Listeria_phage	5.5e-53	29.3

DBSCAN-SWA_2

1242434 : 1330955

109

Listeria_phage(64.71%)

integrase,tail,plate,capsid,portal,terminase,holin,tRNA,protease

attL 1252726:1252742|attR 1274542:1274558

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010990842.1\|1242434_1243682_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.2e-107	52.0
WP_010990843.1\|1243665_1244496_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
WP_003771572.1\|1244631_1245771_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003771574.1\|1245850_1246246_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	3.0e-14	55.9
WP_010990844.1\|1246562_1247978_-	recombinase family protein	A0A1L2JY12	Aeribacillus_phage	3.3e-116	46.5
WP_010990845.1\|1248054_1248726_-	hypothetical protein	NA	NA	NA	NA
WP_010990846.1\|1248768_1249188_-	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	2.5e-64	81.0
WP_010990847.1\|1249204_1249633_-	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	4.6e-69	95.1
WP_010990848.1\|1249792_1249978_+	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	7.8e-26	90.0
WP_010990849.1\|1250054_1250579_+	hypothetical protein	A8ATK1	Listeria_phage	1.6e-76	80.5
WP_010990850.1\|1250591_1250750_+	hypothetical protein	NA	NA	NA	NA
WP_010990851.1\|1250743_1250908_+	hypothetical protein	A8ATK3	Listeria_phage	2.0e-09	63.0
WP_010990852.1\|1251057_1251342_+	hypothetical protein	A8ATK4	Listeria_phage	9.2e-26	54.2
WP_041918376.1\|1251519_1251747_+	hypothetical protein	A8ATK5	Listeria_phage	1.3e-30	93.3
WP_010990853.1\|1251764_1252106_+	hypothetical protein	A8ATK6	Listeria_phage	3.5e-56	99.1
WP_010990854.1\|1252092_1254033_+	AAA family ATPase	A8ATK7	Listeria_phage	2.2e-272	83.9
1252726:1252742	attL	NA	NA	NA	NA
WP_010990855.1\|1254036_1254819_+	phage recombination protein Bet	A8ATK8	Listeria_phage	2.5e-134	92.7
WP_049781515.1\|1254778_1255516_+	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	4.4e-128	94.3
WP_010990857.1\|1255527_1256445_+	DUF4373 domain-containing protein	A8ATL0	Listeria_phage	7.8e-167	98.4
WP_041918378.1\|1256368_1257184_+	ATP-binding protein	A8ATL1	Listeria_phage	3.1e-143	99.3
WP_041918379.1\|1257180_1257381_+	hypothetical protein	A8ATL2	Listeria_phage	4.0e-28	89.4
WP_041918428.1\|1257367_1257589_+	hypothetical protein	A8ATL3	Listeria_phage	1.3e-27	83.8
WP_010990860.1\|1257545_1257785_+	hypothetical protein	A8ATL4	Listeria_phage	3.0e-30	95.7
WP_010990861.1\|1257765_1258203_+	RusA family crossover junction endodeoxyribonuclease	A8ATL5	Listeria_phage	3.7e-74	94.5
WP_010990862.1\|1258224_1258845_+	hypothetical protein	A8ATL6	Listeria_phage	1.0e-98	90.8
WP_010990863.1\|1258885_1259263_+	hypothetical protein	A8ATL7	Listeria_phage	3.0e-56	83.3
WP_010990864.1\|1259222_1259399_+	hypothetical protein	A8ATL8	Listeria_phage	1.9e-21	93.1
WP_010990865.1\|1259410_1259833_+	hypothetical protein	A8ATL9	Listeria_phage	9.7e-48	87.1
WP_010990866.1\|1259829_1261191_+	PcfJ domain-containing protein	A8ATM0	Listeria_phage	6.6e-263	99.3
WP_015987344.1\|1261203_1261428_+	hypothetical protein	A8ATM1	Listeria_phage	3.6e-41	100.0
WP_010990867.1\|1261427_1262372_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	2.4e-179	100.0
WP_010990868.1\|1262384_1263065_+	hypothetical protein	A8ATM3	Listeria_phage	3.2e-125	100.0
WP_010990869.1\|1263061_1263355_+	hypothetical protein	A8ATM4	Listeria_phage	4.4e-47	100.0
WP_167529958.1\|1263490_1263643_+	hypothetical protein	A8ATM6	Listeria_phage	2.3e-15	82.0
WP_010990870.1\|1263765_1264293_-	hypothetical protein	NA	NA	NA	NA
WP_041918380.1\|1264361_1264922_+	phage protein	A8ATM8	Listeria_phage	2.1e-98	93.5
WP_041918381.1\|1265002_1265425_+	hypothetical protein	A8ATM9	Listeria_phage	3.1e-70	99.3
WP_010990873.1\|1265437_1266205_+	phage antirepressor KilAC domain-containing protein	A8ATN0	Listeria_phage	7.5e-139	98.4
WP_010990874.1\|1266854_1267334_+	hypothetical protein	NA	NA	NA	NA
WP_010990875.1\|1267398_1268736_+	ParB N-terminal domain-containing protein	A8ATN5	Listeria_phage	4.2e-246	95.3
WP_010990876.1\|1268783_1268981_+	hypothetical protein	A8ATN6	Listeria_phage	8.9e-28	98.5
WP_010990877.1\|1269110_1269341_+	hypothetical protein	A8ATN7	Listeria_phage	1.1e-29	88.2
WP_010990878.1\|1269368_1269593_+	hypothetical protein	A8ATN8	Listeria_phage	2.7e-36	100.0
WP_010990879.1\|1269645_1270482_+	hypothetical protein	C9E2I6	Enterococcus_phage	1.2e-17	31.5
WP_010990880.1\|1270468_1271803_+\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	2.8e-125	54.2
WP_010990881.1\|1271792_1273367_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	7.4e-117	43.6
WP_010990882.1\|1273353_1275102_+	hypothetical protein	NA	NA	NA	NA
1274542:1274558	attR	NA	NA	NA	NA
WP_041918382.1\|1275103_1275385_+	hypothetical protein	NA	NA	NA	NA
WP_010990883.1\|1275479_1276574_+	hypothetical protein	A0A1B1P7E4	Bacillus_phage	1.1e-66	49.7
WP_010990884.1\|1276589_1277519_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	3.5e-98	60.2
WP_010990885.1\|1277524_1277737_+	hypothetical protein	NA	NA	NA	NA
WP_010990886.1\|1277748_1278153_+	DUF3199 family protein	NA	NA	NA	NA
WP_010990887.1\|1278154_1278514_+	DUF3599 family protein	NA	NA	NA	NA
WP_041918432.1\|1278519_1279020_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	6.4e-38	48.1
WP_010990889.1\|1279029_1279509_+	hypothetical protein	NA	NA	NA	NA
WP_010990890.1\|1279501_1279738_+	hypothetical protein	NA	NA	NA	NA
WP_010990891.1\|1279739_1281098_+\|tail	phage tail sheath family protein	A0A0A7RTT5	Clostridium_phage	9.1e-79	40.5
WP_010990892.1\|1281099_1281546_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	1.8e-20	40.6
WP_010990893.1\|1281620_1282109_+	hypothetical protein	NA	NA	NA	NA
WP_159097386.1\|1282324_1286263_+	hypothetical protein	A0A0N7ACN7	Bacillus_phage	4.5e-54	45.4
WP_010990895.1\|1286255_1286939_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_010990896.1\|1286949_1287927_+	hypothetical protein	NA	NA	NA	NA
WP_010990897.1\|1287926_1288181_+	hypothetical protein	NA	NA	NA	NA
WP_141021582.1\|1288186_1288603_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	1.1e-11	37.1
WP_041918435.1\|1288621_1289689_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	5.7e-60	39.5
WP_010990900.1\|1289699_1290269_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_010990901.1\|1290265_1290535_+	hypothetical protein	NA	NA	NA	NA
WP_010990903.1\|1291363_1291705_+	hypothetical protein	A8ATI5	Listeria_phage	2.3e-39	91.3
WP_010990905.1\|1291890_1292337_+	hypothetical protein	A8ATI7	Listeria_phage	9.9e-67	89.9
WP_010990906.1\|1292312_1292759_+	hypothetical protein	A8ATI8	Listeria_phage	3.5e-64	95.9
WP_041918438.1\|1292861_1293116_+\|holin	phage holin	A8ATJ0	Listeria_phage	3.6e-37	94.0
WP_010990908.1\|1293118_1293952_+	N-acetylmuramoyl-L-alanine amidase	A0A1S7FZ94	Listeria_phage	3.6e-46	44.5
WP_010990909.1\|1294013_1294235_-	helix-turn-helix transcriptional regulator	A8ATJ2	Listeria_phage	1.6e-33	97.3
WP_010990910.1\|1294262_1294466_-	hypothetical protein	A8ATJ3	Listeria_phage	6.8e-31	97.0
WP_010990911.1\|1294479_1294845_-	hypothetical protein	A8ATJ4	Listeria_phage	3.1e-58	98.3
WP_010990912.1\|1295417_1296029_+	hypothetical protein	NA	NA	NA	NA
WP_010990913.1\|1296050_1296416_+	hypothetical protein	NA	NA	NA	NA
WP_049781516.1\|1296556_1296790_+	hypothetical protein	A8ATC5	Listeria_phage	1.5e-34	92.2
WP_010990914.1\|1296786_1297008_+	hypothetical protein	A8ATX1	Listeria_phage	2.4e-21	89.7
WP_010990915.1\|1297269_1297803_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_010990916.1\|1297818_1298484_+	hypothetical protein	NA	NA	NA	NA
WP_010990917.1\|1298739_1299678_+	hypothetical protein	NA	NA	NA	NA
WP_003771581.1\|1299792_1301076_+	trigger factor	NA	NA	NA	NA
WP_003766662.1\|1301260_1302520_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.0e-145	62.9
WP_003771597.1\|1302639_1303206_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003761950.1\|1303241_1303811_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003771599.1\|1303913_1304456_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003761952.1\|1304465_1305329_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_010990918.1\|1305325_1306111_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	5.7e-25	39.2
WP_010990919.1\|1306245_1307106_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003766673.1\|1307375_1309454_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	4.1e-107	37.7
WP_010990920.1\|1309517_1310822_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_010990921.1\|1311105_1312008_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	5.2e-14	28.8
WP_003761964.1\|1312029_1312569_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010990922.1\|1312582_1313992_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.4e-44	27.8
WP_003747412.1\|1314012_1314792_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003761973.1\|1314894_1315314_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003761975.1\|1315336_1315648_+	hypothetical protein	NA	NA	NA	NA
WP_010990924.1\|1315650_1316523_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003761980.1\|1316565_1317162_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003761982.1\|1317319_1317730_+	CoA-binding protein	NA	NA	NA	NA
WP_003771622.1\|1317905_1319873_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.8e-123	42.5
WP_010990925.1\|1319869_1322326_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.1e-104	32.8
WP_010990926.1\|1322406_1322874_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_010990927.1\|1323225_1325088_+	LapB repeat-containing protein	NA	NA	NA	NA
WP_010990928.1\|1325195_1327097_-	acetyltransferase	B5WZU0	Pseudomonas_phage	6.6e-43	32.8
WP_010990929.1\|1327305_1328013_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.4e-09	49.3
WP_010990930.1\|1328236_1329913_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_010990931.1\|1330037_1330955_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_3

1710970 : 1767078

Listeria_phage(94.74%)

integrase,plate,head,terminase,holin,tRNA,protease

attL 1707860:1707878|attR 1772901:1772919

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1707860:1707878	attL	NA	NA	NA	NA
WP_003772139.1\|1710970_1711465_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_041918386.1\|1711642_1712296_-	VanZ family protein	NA	NA	NA	NA
WP_010991651.1\|1712667_1712907_-	hypothetical protein	NA	NA	NA	NA
WP_041918388.1\|1713412_1713646_-	hypothetical protein	A8ATC5	Listeria_phage	9.2e-32	89.6
WP_010991652.1\|1713957_1714335_+	anti-CRISPR protein AcrIIA3	A0A059T686	Listeria_phage	1.2e-65	96.0
WP_010991653.1\|1714368_1714719_+	AcrIIA2 family anti-CRISPR protein	Q9T195	Listeria_phage	2.6e-54	94.0
WP_010991654.1\|1714723_1715173_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	4.2e-65	85.2
WP_010991655.1\|1715215_1716142_-	N-acetylmuramoyl-L-alanine amidase family protein	R4ICC5	Listeria_phage	2.7e-159	85.4
WP_010991656.1\|1716144_1716378_-	hypothetical protein	R4IBI3	Listeria_phage	3.5e-31	88.3
WP_010991657.1\|1716377_1716638_-\|holin	phage holin	A0A059T684	Listeria_phage	7.6e-35	81.4
WP_010991658.1\|1716648_1716864_-	LysM peptidoglycan-binding domain-containing protein	A8ATI9	Listeria_phage	3.8e-24	87.3
WP_010991659.1\|1716882_1717329_-	hypothetical protein	A8ATI8	Listeria_phage	2.3e-63	89.9
WP_010991660.1\|1717304_1717751_-	hypothetical protein	A8ATI7	Listeria_phage	6.9e-68	91.2
WP_010991661.1\|1717937_1718279_-	hypothetical protein	A8ATI5	Listeria_phage	2.2e-34	86.0
WP_010991662.1\|1718284_1719013_-	hypothetical protein	A8ATI4	Listeria_phage	7.9e-138	99.6
WP_010991663.1\|1719033_1719675_-	hypothetical protein	A8ATI3	Listeria_phage	9.1e-114	100.0
WP_010991664.1\|1719664_1720816_-\|plate	baseplate J/gp47 family protein	A8ATI2	Listeria_phage	3.2e-210	100.0
WP_010991665.1\|1720808_1721171_-	DUF2634 domain-containing protein	A8ATI1	Listeria_phage	1.4e-58	100.0
WP_010991666.1\|1721167_1721506_-	hypothetical protein	A8ATI0	Listeria_phage	5.4e-57	100.0
WP_010991667.1\|1721506_1722313_-	hypothetical protein	A8ATH9	Listeria_phage	5.4e-148	100.0
WP_010991668.1\|1722312_1722678_-	hypothetical protein	A8ATH8	Listeria_phage	3.2e-63	100.0
WP_010991669.1\|1722677_1723241_-	LysM peptidoglycan-binding domain-containing protein	A8ATH7	Listeria_phage	9.2e-94	100.0
WP_010991670.1\|1723246_1727962_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	0.0e+00	99.9
WP_003731526.1\|1727963_1728176_-	hypothetical protein	A8ATH5	Listeria_phage	3.7e-32	100.0
WP_003731525.1\|1728138_1728495_-	hypothetical protein	A8ATH4	Listeria_phage	1.4e-60	100.0
WP_003731524.1\|1728547_1728946_-	hypothetical protein	A8ATH3	Listeria_phage	4.7e-68	100.0
WP_003731523.1\|1728962_1729958_-	DUF3383 family protein	A8ATH2	Listeria_phage	1.9e-182	100.0
WP_003731522.1\|1729962_1730451_-	hypothetical protein	A8ATH1	Listeria_phage	3.2e-87	100.0
WP_003731521.1\|1730440_1730815_-	hypothetical protein	A8ATH0	Listeria_phage	4.6e-65	100.0
WP_003731520.1\|1730814_1731414_-	hypothetical protein	A8ATG9	Listeria_phage	2.6e-110	100.0
WP_003731519.1\|1731413_1731749_-	DUF4054 domain-containing protein	A8ATG8	Listeria_phage	2.1e-53	100.0
WP_003731518.1\|1731760_1732147_-	hypothetical protein	A8ATG7	Listeria_phage	1.0e-64	97.7
WP_003731517.1\|1732169_1733075_-	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	2.1e-164	99.0
WP_003731516.1\|1733095_1733545_-	hypothetical protein	A8ATG5	Listeria_phage	9.0e-76	100.0
WP_003731515.1\|1733544_1734654_-	DUF2213 domain-containing protein	A8ATG4	Listeria_phage	6.5e-176	100.0
WP_003731514.1\|1734702_1734873_-	hypothetical protein	A8ATG3	Listeria_phage	1.1e-26	100.0
WP_003731513.1\|1734869_1736279_-\|head	phage head morphogenesis protein	A8ATG2	Listeria_phage	7.8e-267	100.0
WP_003731512.1\|1736271_1737657_-	DUF1073 domain-containing protein	A8ATG1	Listeria_phage	1.1e-265	100.0
WP_003731511.1\|1737670_1739131_-\|terminase	phage terminase large subunit	A8ATG0	Listeria_phage	4.4e-289	100.0
WP_003731510.1\|1739108_1739993_-	hypothetical protein	A8ATF9	Listeria_phage	6.6e-139	99.3
WP_010990878.1\|1740038_1740263_-	hypothetical protein	A8ATN8	Listeria_phage	2.7e-36	100.0
WP_010991671.1\|1740290_1740521_-	hypothetical protein	A8ATN7	Listeria_phage	9.7e-34	100.0
WP_003731507.1\|1740651_1740849_-	hypothetical protein	A8ATN6	Listeria_phage	5.2e-28	100.0
WP_010991672.1\|1740896_1742234_-	ParB N-terminal domain-containing protein	A8ATN5	Listeria_phage	2.0e-256	99.3
WP_003731505.1\|1742230_1742524_-	hypothetical protein	A8ATN4	Listeria_phage	2.3e-48	100.0
WP_010991673.1\|1743051_1743819_-	phage antirepressor KilAC domain-containing protein	A8ATN0	Listeria_phage	1.5e-139	98.8
WP_041918381.1\|1743831_1744254_-	hypothetical protein	A8ATM9	Listeria_phage	3.1e-70	99.3
WP_010991674.1\|1744334_1744895_-	hypothetical protein	A8ATM8	Listeria_phage	3.4e-104	98.9
WP_010991675.1\|1744906_1745158_-	DUF3850 domain-containing protein	A8ATM7	Listeria_phage	4.7e-42	100.0
WP_003731499.1\|1745154_1745307_-	hypothetical protein	A8ATM6	Listeria_phage	8.1e-21	100.0
WP_015987345.1\|1745293_1745434_-	hypothetical protein	A8ATM5	Listeria_phage	2.3e-14	100.0
WP_010990869.1\|1745451_1745745_-	hypothetical protein	A8ATM4	Listeria_phage	4.4e-47	100.0
WP_010990868.1\|1745741_1746422_-	hypothetical protein	A8ATM3	Listeria_phage	3.2e-125	100.0
WP_010990867.1\|1746434_1747379_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	2.4e-179	100.0
WP_015987344.1\|1747378_1747603_-	hypothetical protein	A8ATM1	Listeria_phage	3.6e-41	100.0
WP_010990866.1\|1747615_1748977_-	PcfJ domain-containing protein	A8ATM0	Listeria_phage	6.6e-263	99.3
WP_010990865.1\|1748973_1749396_-	hypothetical protein	A8ATL9	Listeria_phage	9.7e-48	87.1
WP_010990864.1\|1749407_1749584_-	hypothetical protein	A8ATL8	Listeria_phage	1.9e-21	93.1
WP_010990863.1\|1749543_1749921_-	hypothetical protein	A8ATL7	Listeria_phage	3.0e-56	83.3
WP_010990862.1\|1749961_1750582_-	hypothetical protein	A8ATL6	Listeria_phage	1.0e-98	90.8
WP_010990861.1\|1750603_1751041_-	RusA family crossover junction endodeoxyribonuclease	A8ATL5	Listeria_phage	3.7e-74	94.5
WP_010990860.1\|1751021_1751261_-	hypothetical protein	A8ATL4	Listeria_phage	3.0e-30	95.7
WP_041918428.1\|1751217_1751439_-	hypothetical protein	A8ATL3	Listeria_phage	1.3e-27	83.8
WP_041918379.1\|1751425_1751626_-	hypothetical protein	A8ATL2	Listeria_phage	4.0e-28	89.4
WP_041918378.1\|1751622_1752438_-	ATP-binding protein	A8ATL1	Listeria_phage	3.1e-143	99.3
WP_010990857.1\|1752361_1753279_-	DUF4373 domain-containing protein	A8ATL0	Listeria_phage	7.8e-167	98.4
WP_049781515.1\|1753290_1754028_-	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	4.4e-128	94.3
WP_010990855.1\|1753987_1754770_-	phage recombination protein Bet	A8ATK8	Listeria_phage	2.5e-134	92.7
WP_041918389.1\|1754773_1756714_-	AAA family ATPase	A8ATK7	Listeria_phage	9.1e-274	84.4
WP_010990853.1\|1756700_1757042_-	hypothetical protein	A8ATK6	Listeria_phage	3.5e-56	99.1
WP_010990938.1\|1757059_1757287_-	hypothetical protein	A8ATK5	Listeria_phage	2.0e-31	97.3
WP_003731476.1\|1757464_1757755_-	hypothetical protein	A8ATK4	Listeria_phage	4.6e-49	100.0
WP_159097387.1\|1757837_1757981_-	hypothetical protein	NA	NA	NA	NA
WP_003731474.1\|1758073_1758367_-	helix-turn-helix domain-containing protein	A8ATK2	Listeria_phage	2.3e-48	100.0
WP_003731473.1\|1758381_1758906_-	hypothetical protein	A8ATK1	Listeria_phage	5.5e-93	100.0
WP_010990939.1\|1758977_1759202_-	helix-turn-helix transcriptional regulator	A0A2H4J4N8	uncultured_Caudovirales_phage	2.3e-11	54.9
WP_010990940.1\|1759362_1759803_+	helix-turn-helix transcriptional regulator	A0A2P1JU09	Anoxybacillus_phage	6.0e-24	44.4
WP_010990941.1\|1759825_1760248_+	ImmA/IrrE family metallo-endopeptidase	A0A0M4RD70	Bacillus_phage	4.5e-29	50.8
WP_010990942.1\|1760283_1760832_+	hypothetical protein	NA	NA	NA	NA
WP_010990943.1\|1760913_1762089_+\|integrase	site-specific integrase	A8ATJ6	Listeria_phage	1.9e-218	96.7
WP_003762546.1\|1762249_1763134_-	elongation factor Ts	NA	NA	NA	NA
WP_003772143.1\|1763213_1763963_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_167529959.1\|1764157_1764544_-	transcriptional regulator	NA	NA	NA	NA
WP_010990945.1\|1764666_1767078_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	70.2
1772901:1772919	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1892543 : 1900826

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003762851.1\|1892543_1893110_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.7e-26	39.7
WP_003769067.1\|1893106_1894153_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-60	42.9
WP_010991001.1\|1894171_1895599_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.2e-54	34.6
WP_010991002.1\|1895583_1897803_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	41.0
WP_010991003.1\|1897795_1898479_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1898482_1898728_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_010991004.1\|1898739_1899453_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	9.4e-43	39.6
WP_010991005.1\|1899533_1900826_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.1e-17	33.0

DBSCAN-SWA_5

2406901 : 2446744

Listeria_phage(96.55%)

integrase,tail,plate,terminase,holin

attL 2400503:2400520|attR 2449860:2449877

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2400503:2400520	attL	NA	NA	NA	NA
WP_010991147.1\|2406901_2407135_-	hypothetical protein	A8ATX0	Listeria_phage	2.1e-36	98.7
WP_010991148.1\|2407381_2408278_-	Abi family protein	A0A1S5S8T0	Streptococcus_phage	3.3e-13	23.9
WP_010991149.1\|2408640_2409591_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0B5CTW5	Listeria_phage	2.1e-183	98.4
WP_010991150.1\|2409590_2409872_-\|holin	phage holin	A0A059T664	Listeria_phage	3.0e-45	100.0
WP_003733957.1\|2409871_2410177_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003740843.1\|2410217_2410364_-	XkdX family protein	A0A0B5CYN8	Listeria_phage	1.5e-19	100.0
WP_003725055.1\|2410364_2410706_-	hypothetical protein	A8ASL1	Listeria_phage	4.2e-57	100.0
WP_003740845.1\|2410702_2411776_-\|plate	BppU family phage baseplate upper protein	A0A0B5D119	Listeria_phage	2.5e-196	100.0
WP_010991151.1\|2411772_2412801_-	hypothetical protein	A0A0B5D0C2	Listeria_phage	2.2e-194	100.0
WP_003740854.1\|2412797_2413811_-\|tail	phage tail protein	A0A0B5CYL4	Listeria_phage	1.2e-187	100.0
WP_003740856.1\|2413823_2414648_-\|tail	phage tail family protein	A0A0B5CTY7	Listeria_phage	8.6e-157	98.9
WP_010991152.1\|2414651_2419457_-\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	97.3
WP_072218650.1\|2419461_2419773_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.2e-42	98.9
WP_010991153.1\|2419769_2420201_-	hypothetical protein	A8ATV7	Listeria_phage	1.1e-70	95.8
WP_010991154.1\|2420250_2420937_-	Ig domain-containing protein	A8ATV6	Listeria_phage	9.5e-109	93.0
WP_010991155.1\|2420941_2421313_-	hypothetical protein	A0A0B5CTY4	Listeria_phage	5.5e-63	99.2
WP_023548511.1\|2421309_2421627_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	2.7e-50	97.1
WP_010991156.1\|2421616_2421982_-	hypothetical protein	A8ATV3	Listeria_phage	3.5e-62	95.9
WP_003740890.1\|2421981_2422335_-	hypothetical protein	A8ATV2	Listeria_phage	2.4e-60	98.3
WP_010991157.1\|2422335_2422491_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.7e-18	96.1
WP_003740892.1\|2422504_2423377_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	7.4e-159	97.2
WP_003740894.1\|2423399_2423954_-	hypothetical protein	A8ATU9	Listeria_phage	1.7e-84	89.1
WP_003725070.1\|2424048_2425092_-	hypothetical protein	A0A0B5D111	Listeria_phage	4.8e-197	98.0
WP_010991158.1\|2425096_2426653_-	hypothetical protein	A8ATU7	Listeria_phage	6.8e-296	97.5
WP_003725072.1\|2426667_2428014_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	2.7e-253	94.1
WP_003733714.1\|2427979_2428720_-	hypothetical protein	A8ATU5	Listeria_phage	7.0e-134	98.8
WP_003725074.1\|2428759_2428987_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.8e-32	94.7
WP_010991160.1\|2429268_2429841_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	3.2e-86	84.7
WP_010991161.1\|2429928_2430084_-	DUF3954 domain-containing protein	A0A0B5D0E9	Listeria_phage	5.7e-22	96.1
WP_003734996.1\|2430124_2430508_-	DUF2481 family protein	A8ASP8	Listeria_phage	2.9e-35	56.7
WP_010991162.1\|2430511_2430916_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.7e-57	83.6
WP_010991163.1\|2430860_2431043_-	hypothetical protein	A8ASP6	Listeria_phage	1.4e-14	75.9
WP_010991164.1\|2431064_2431547_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.5e-68	82.5
WP_010991165.1\|2431923_2432103_-	hypothetical protein	A8ATE3	Listeria_phage	8.6e-22	86.4
WP_010991166.1\|2432099_2432270_-	hypothetical protein	A0A076G660	Listeria_phage	7.4e-07	55.1
WP_149021276.1\|2432266_2432449_-	DUF1642 domain-containing protein	NA	NA	NA	NA
WP_010991167.1\|2432411_2432621_-	hypothetical protein	A0A059T695	Listeria_phage	4.2e-28	91.3
WP_041918396.1\|2432622_2432817_-	hypothetical protein	NA	NA	NA	NA
WP_010991168.1\|2432835_2432982_-	hypothetical protein	A8ATZ0	Listeria_phage	2.3e-20	97.9
WP_010991170.1\|2433732_2434677_-\|integrase	site-specific integrase	A8ATD6	Listeria_phage	1.0e-174	96.8
WP_010991171.1\|2434687_2435401_-	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	4.1e-131	99.6
WP_003769985.1\|2435421_2435697_-	hypothetical protein	A0A059T7V3	Listeria_phage	2.9e-37	87.4
WP_010991172.1\|2435693_2436626_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	3.0e-166	98.4
WP_010991173.1\|2436645_2437461_-	recombinase RecT	A8ATY6	Listeria_phage	3.5e-150	98.9
WP_010991174.1\|2437460_2438420_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.3e-177	99.4
WP_010989962.1\|2438651_2438840_-	hypothetical protein	Q9T175	Listeria_phage	2.0e-21	79.0
WP_010991175.1\|2438947_2439163_-	hypothetical protein	Q9T176	Listeria_phage	2.2e-27	91.5
WP_010991176.1\|2439159_2439693_-	hypothetical protein	A0A0B5D173	Listeria_phage	2.3e-78	87.3
WP_010991177.1\|2439815_2440586_-	phage repressor protein/antirepressor Ant	A8ATY0	Listeria_phage	7.4e-102	71.7
WP_023552476.1\|2440649_2440892_+	hypothetical protein	A0A059T7Q3	Listeria_phage	2.8e-31	83.8
WP_010991178.1\|2440884_2441046_-	hypothetical protein	A0A059T7X7	Listeria_phage	2.0e-14	77.4
WP_010991179.1\|2441045_2441312_-	hypothetical protein	A0A059T5E9	Listeria_phage	1.8e-23	69.7
WP_003733635.1\|2441323_2441518_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.9e-25	93.8
WP_010991180.1\|2441521_2441773_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	8.4e-39	98.8
WP_010991181.1\|2441921_2442404_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	1.9e-31	78.0
WP_003733638.1\|2442560_2442728_+	hypothetical protein	NA	NA	NA	NA
WP_003747290.1\|2442783_2443002_+	hypothetical protein	A0A059T6E3	Listeria_phage	2.4e-26	81.9
WP_003727738.1\|2443017_2443740_+	hypothetical protein	A0A059T7P9	Listeria_phage	1.3e-105	100.0
WP_010991182.1\|2443760_2444468_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	6.3e-92	74.5
WP_010991183.1\|2444532_2445891_+	recombinase family protein	Q9T193	Listeria_phage	4.3e-254	97.6
WP_010991184.1\|2445881_2446349_+	competence protein ComK	NA	NA	NA	NA
WP_003749261.1\|2446396_2446744_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7
2449860:2449877	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2587043 : 2644096

Listeria_phage(59.02%)

integrase,tail,plate,head,portal,terminase,holin,protease,capsid

attL 2604448:2604464|attR 2633502:2633518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003772372.1\|2587043_2587379_+	hypothetical protein	S5MNN8	Brevibacillus_phage	7.1e-17	77.1
WP_003769913.1\|2587879_2588086_+	hypothetical protein	A0A059T7Z0	Listeria_phage	1.3e-16	82.8
WP_010991148.1\|2588160_2589057_-	Abi family protein	A0A1S5S8T0	Streptococcus_phage	3.3e-13	23.9
WP_010991149.1\|2589419_2590370_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0B5CTW5	Listeria_phage	2.1e-183	98.4
WP_010991150.1\|2590369_2590651_-\|holin	phage holin	A0A059T664	Listeria_phage	3.0e-45	100.0
WP_003733957.1\|2590650_2590956_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003740843.1\|2590996_2591143_-	XkdX family protein	A0A0B5CYN8	Listeria_phage	1.5e-19	100.0
WP_003725055.1\|2591143_2591485_-	hypothetical protein	A8ASL1	Listeria_phage	4.2e-57	100.0
WP_010991258.1\|2591481_2592603_-\|plate	BppU family phage baseplate upper protein	Q8W5Z4	Listeria_phage	4.2e-130	78.0
WP_010991259.1\|2592599_2594741_-\|tail	phage tail protein	Q8W5Z5	Listeria_phage	2.7e-210	54.1
WP_010991260.1\|2594722_2595463_-	hypothetical protein	Q8W5Z6	Listeria_phage	1.2e-08	23.5
WP_010991261.1\|2595459_2598741_-\|tail	phage tail tape measure protein	D2XR25	Bacillus_phage	8.1e-73	43.5
WP_010991263.1\|2598964_2599321_-	hypothetical protein	D2XR24	Bacillus_phage	5.3e-31	55.9
WP_010991264.1\|2599364_2599943_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	6.0e-64	63.8
WP_010991265.1\|2599943_2600267_-	hypothetical protein	A0A290GDX2	Caldibacillus_phage	6.1e-18	48.6
WP_010991266.1\|2600263_2600617_-	HK97 gp10 family phage protein	A0A0U4II15	Exiguobacterium_phage	2.3e-18	40.2
WP_010991267.1\|2600623_2600929_-\|head	phage head closure protein	Q0H236	Geobacillus_phage	1.5e-21	49.0
WP_010991268.1\|2600915_2601203_-	hypothetical protein	A6XMJ8	Bacillus_virus	5.6e-23	64.7
WP_031659892.1\|2601202_2601382_-	hypothetical protein	Q0H260	Geobacillus_phage	2.4e-11	53.3
WP_010991269.1\|2601386_2602574_-\|capsid	phage major capsid protein	A0A2H4J3W9	uncultured_Caudovirales_phage	2.9e-89	58.8
WP_010991270.1\|2602564_2603149_-\|head,protease	HK97 family phage prohead protease	Q0H262	Geobacillus_phage	8.8e-47	53.8
WP_010991271.1\|2603145_2604327_-\|portal	phage portal protein	Q0H263	Geobacillus_phage	2.0e-130	60.2
WP_010991272.1\|2604340_2606092_-\|terminase	terminase large subunit	A6XMJ4	Bacillus_virus	1.4e-260	74.6
2604448:2604464	attL	NA	NA	NA	NA
WP_010991273.1\|2606088_2606463_-\|terminase	P27 family phage terminase small subunit	A0A0U4JV93	Exiguobacterium_phage	6.7e-24	57.0
WP_010991274.1\|2606503_2606878_-	HNH endonuclease	C5J957	Streptococcus_phage	2.3e-24	50.9
WP_010991275.1\|2607195_2607939_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_003731654.1\|2608036_2608462_-	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	1.8e-73	99.3
WP_010991276.1\|2608474_2608702_-	hypothetical protein	NA	NA	NA	NA
WP_041918446.1\|2608918_2609452_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.0e-78	81.1
WP_010991278.1\|2609565_2609880_-	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	2.0e-53	99.0
WP_010991279.1\|2610168_2612442_-	primase	R4IBW2	Listeria_phage	0.0e+00	99.9
WP_010991280.1\|2612464_2612947_-	DUF669 domain-containing protein	A8ATF2	Listeria_phage	1.9e-87	99.4
WP_010991281.1\|2612969_2614226_-	DEAD/DEAH box helicase	R4IBK4	Listeria_phage	1.4e-230	100.0
WP_010991282.1\|2614289_2614979_-	AAA family ATPase	R4IDY8	Listeria_phage	1.2e-130	100.0
WP_010991283.1\|2614991_2615471_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	7.1e-79	100.0
WP_041918402.1\|2615472_2615856_-	hypothetical protein	R4IBW1	Listeria_phage	7.2e-66	99.2
WP_010991284.1\|2615852_2616026_-	hypothetical protein	A0A059T5G3	Listeria_phage	9.8e-23	94.7
WP_041918403.1\|2616022_2616292_-	hypothetical protein	Q8W5W6	Listeria_phage	1.5e-22	65.9
WP_010991286.1\|2616493_2616715_-	hypothetical protein	A0A059T5G2	Listeria_phage	2.0e-36	93.2
WP_041918404.1\|2616899_2617106_-	hypothetical protein	A0A059T6C7	Listeria_phage	2.2e-29	92.6
WP_003762548.1\|2617102_2617618_-	hypothetical protein	C9E2P0	Enterococcus_phage	2.2e-33	46.2
WP_041918405.1\|2617614_2617800_-	hypothetical protein	Q8W5X1	Listeria_phage	1.1e-24	91.1
WP_003762549.1\|2617816_2618110_-	hypothetical protein	A8ATM4	Listeria_phage	9.1e-37	81.4
WP_010991288.1\|2618106_2618295_-	hypothetical protein	NA	NA	NA	NA
WP_010991289.1\|2618287_2618686_-	hypothetical protein	A0A0B5CYQ9	Listeria_phage	3.4e-66	92.9
WP_010991290.1\|2618682_2619363_-	hypothetical protein	A8ATD7	Listeria_phage	1.4e-120	96.5
WP_010991291.1\|2619375_2620320_-\|integrase	site-specific integrase	A8ATD6	Listeria_phage	1.2e-173	96.2
WP_010991171.1\|2620330_2621044_-	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	4.1e-131	99.6
WP_010991292.1\|2621064_2621352_-	hypothetical protein	A0A059T7V3	Listeria_phage	2.7e-41	90.5
WP_009929542.1\|2621488_2621641_-	hypothetical protein	A8ATD4	Listeria_phage	1.5e-19	100.0
WP_041918406.1\|2621875_2622061_-	hypothetical protein	A8ATD3	Listeria_phage	1.1e-27	96.7
WP_003730996.1\|2622063_2622306_-	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730995.1\|2622327_2622519_-	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_010991293.1\|2622585_2622789_+	hypothetical protein	NA	NA	NA	NA
WP_010991294.1\|2623189_2623513_+	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	5.9e-37	72.9
WP_010991295.1\|2623529_2623982_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	1.1e-78	91.3
WP_010991296.1\|2624032_2624521_+	hypothetical protein	NA	NA	NA	NA
WP_010991297.1\|2624652_2625807_+\|integrase	site-specific integrase	Q8W5Y3	Listeria_phage	3.0e-200	90.9
WP_010991298.1\|2626100_2627537_-	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.4e-24	38.8
WP_003768278.1\|2627694_2628291_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.0e-58	57.4
WP_010991299.1\|2628341_2629733_-	amino acid permease	NA	NA	NA	NA
WP_010991300.1\|2629972_2630989_-	NADPH dehydrogenase NamA	NA	NA	NA	NA
WP_003768282.1\|2631014_2631986_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_010991301.1\|2631993_2632962_-	YvcK family protein	A1IMD5	Streptococcus_phage	8.8e-68	42.9
WP_003763899.1\|2632963_2633839_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.9e-09	30.5
2633502:2633518	attR	NA	NA	NA	NA
WP_010991302.1\|2633947_2635678_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.5e-171	52.6
WP_010991303.1\|2635722_2636784_-	galactose mutarotase	NA	NA	NA	NA
WP_041918407.1\|2636799_2637783_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.1e-52	38.4
WP_003772358.1\|2637898_2638858_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.5e-88	54.1
WP_010991305.1\|2638935_2640411_-	hypothetical protein	NA	NA	NA	NA
WP_003772356.1\|2640495_2640993_-	acyltransferase	NA	NA	NA	NA
WP_003763908.1\|2640996_2641650_-	pyrophosphatase PpaX	NA	NA	NA	NA
WP_003772355.1\|2641692_2642526_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_003763911.1\|2642617_2643556_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_003763913.1\|2643742_2644096_-\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_003212.1|WP_010990942.1|1760283_1760832_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_003212.1|WP_003731473.1|1758381_1758906_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_003212.1|WP_010990942.1|1760283_1760832_+|hypothetical-protein

1760283_1760832_+

182 aa aa

1710970-1767078

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_003212_3	TypeII	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	1724747-1724776	0

1. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_003212 position: 1724747-1724776, mismatch: 0

ttttccgagcgctgcatcttttatactgtt	CRISPR spacer
ttttccgagcgctgcatcttttatactgtt	Protospacer
******************************

NC_003212.1|WP_003731473.1|1758381_1758906_-|hypothetical-protein

1758381_1758906_-

174 aa aa

1710970-1767078

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_003212_3	TypeII	3.4\|2769226\|30\|NC_003212\|CRISPRCasFinder,CRT,PILER-CR	2769226-2769255	30	1724747-1724776	0

1. spacer 3.4|2769226|30|NC_003212|CRISPRCasFinder,CRT,PILER-CR matches to NC_003212 position: 1724747-1724776, mismatch: 0

ttttccgagcgctgcatcttttatactgtt	CRISPR spacer
ttttccgagcgctgcatcttttatactgtt	Protospacer
******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003383

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003212

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information