CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	0 crisprs	DEDDh	0	1
NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	1 crisprs	csa3	2	2
NC_003198	Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	4	15

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28 : 106516

123

Salmonella_phage(91.96%)

integrase,terminase,tail

attL 1567:1583|attR 62368:62384

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000859650.1\|28_334_-	hypothetical protein	J9Q7Z5	Salmonella_phage	4.9e-33	90.8
WP_000699340.1\|374_650_-	hypothetical protein	J9Q738	Salmonella_phage	5.9e-46	96.7
WP_000737807.1\|718_1129_-	hypothetical protein	J9Q7G9	Salmonella_phage	1.4e-75	97.1
WP_000801005.1\|1112_1484_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	3.0e-69	98.4
1567:1583	attL	NA	NA	NA	NA
WP_000715582.1\|1646_2489_-	hypothetical protein	J9Q7Z4	Salmonella_phage	2.3e-125	97.1
WP_000589750.1\|2492_2693_-	hypothetical protein	J9Q6J0	Salmonella_phage	9.3e-25	93.9
WP_160859102.1\|2784_3816_-	recombinase	J9Q736	Salmonella_phage	4.0e-196	99.4
WP_000920226.1\|3863_4130_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_001108398.1\|4129_5074_-	exonuclease	J9Q7S6	Salmonella_phage	6.8e-182	99.4
WP_000045710.1\|5134_6163_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.1e-164	98.8
WP_000102109.1\|6282_6714_-	hypothetical protein	J9Q6I8	Salmonella_phage	4.0e-73	100.0
WP_000459729.1\|6959_7550_+	hypothetical protein	NA	NA	NA	NA
WP_050470735.1\|7643_8069_-	hypothetical protein	J9Q7S4	Salmonella_phage	3.7e-71	97.9
WP_000645855.1\|8083_11602_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.1
WP_000127343.1\|11782_13018_-	AAA domain-containing protein	J9Q733	Salmonella_phage	1.8e-238	99.5
WP_000030420.1\|13114_15277_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	86.4
WP_000790461.1\|15386_15599_-	hypothetical protein	NA	NA	NA	NA
WP_000224608.1\|15860_16247_+	transcriptional regulator	NA	NA	NA	NA
WP_000798892.1\|16238_17345_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	2.1e-25	32.2
WP_001117719.1\|17605_18097_+	hypothetical protein	NA	NA	NA	NA
WP_000869626.1\|18261_18507_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	2.1e-10	41.6
WP_000131231.1\|18506_18887_-	hypothetical protein	Q716B1	Shigella_phage	6.7e-40	67.2
WP_000159906.1\|18902_19106_-	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	4.4e-06	49.2
WP_011011090.1\|19115_19949_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	2.4e-90	65.1
WP_000336844.1\|20002_20557_-	hypothetical protein	NA	NA	NA	NA
WP_000747129.1\|20834_21389_-	hypothetical protein	NA	NA	NA	NA
WP_001062551.1\|21467_22196_-	hypothetical protein	NA	NA	NA	NA
WP_000067984.1\|23768_24074_-	hypothetical protein	J9Q7S1	Salmonella_phage	9.2e-48	98.0
WP_000613550.1\|24070_24223_-	hypothetical protein	J9Q7Z1	Salmonella_phage	8.9e-20	98.0
WP_000605637.1\|24222_24435_-	hypothetical protein	J9Q6I3	Salmonella_phage	7.6e-33	98.6
WP_000413053.1\|24594_25917_-	DNA ligase	J9Q7G5	Salmonella_phage	5.8e-256	98.4
WP_011011093.1\|25951_26209_-	hypothetical protein	J9Q7R9	Salmonella_phage	4.9e-34	92.9
WP_000642525.1\|26509_27304_-	hypothetical protein	J9Q7Z0	Salmonella_phage	4.9e-141	96.2
WP_000209842.1\|27487_28540_+	hypothetical protein	J9Q6F5	Salmonella_phage	1.9e-92	56.7
WP_024134088.1\|28541_29657_-	hypothetical protein	J9Q720	Salmonella_phage	2.1e-214	96.8
WP_011011095.1\|29815_31156_-	AAA family ATPase	J9Q7G4	Salmonella_phage	3.8e-247	99.6
WP_000078184.1\|31216_31942_-	hypothetical protein	J9Q7R8	Salmonella_phage	2.4e-139	98.3
WP_001238819.1\|32223_33279_+	hypothetical protein	A0A2I7RNF6	Vibrio_phage	5.1e-61	42.6
WP_000966077.1\|33348_34104_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	3.2e-57	43.0
WP_162199642.1\|34152_34506_-	hypothetical protein	J9Q7G3	Salmonella_phage	2.2e-45	100.0
WP_000161333.1\|34511_35177_-	AAA family ATPase	J9Q7R7	Salmonella_phage	8.0e-113	95.0
WP_001287064.1\|35507_36059_+	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	7.8e-29	39.8
WP_162199640.1\|36109_36277_-	hypothetical protein	J9Q7G2	Salmonella_phage	1.3e-16	83.0
WP_000147960.1\|36269_36521_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.9e-30	89.2
WP_000856755.1\|36522_37215_-	hypothetical protein	J9Q7Y7	Salmonella_phage	1.1e-125	95.7
WP_000064174.1\|37228_37552_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.7e-50	97.2
WP_000270398.1\|37666_40219_-\|tail	tail fiber domain-containing protein	A0A0A0YQM3	Citrobacter_virus	2.3e-152	52.5
WP_001293197.1\|44704_45292_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-102	92.3
WP_000528167.1\|45279_46077_-\|tail	tail protein	J9Q7R4	Salmonella_phage	1.2e-155	95.8
WP_000511444.1\|46069_46768_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	4.6e-135	98.7
WP_000440566.1\|46857_47193_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_000081619.1\|47234_51818_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	93.1
WP_000952684.1\|51825_52050_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|52175_52493_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_000072376.1\|52552_53299_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	7.8e-125	96.8
WP_000469441.1\|53373_53757_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-67	100.0
WP_000523626.1\|53758_54232_-	hypothetical protein	J9Q711	Salmonella_phage	2.3e-82	100.0
WP_001027662.1\|54222_54567_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_000057119.1\|54664_55498_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.6e-153	100.0
WP_000801184.1\|55497_55932_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.1e-74	100.0
WP_001115046.1\|55975_56899_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.3e-157	100.0
WP_001130336.1\|56973_57849_-	hypothetical protein	J9Q710	Salmonella_phage	3.8e-163	100.0
WP_001055287.1\|57875_58772_-	hypothetical protein	J9Q7F4	Salmonella_phage	5.7e-146	96.6
WP_000423989.1\|58794_60369_-	hypothetical protein	J9Q7R1	Salmonella_phage	3.2e-301	99.0
WP_001007302.1\|60402_61659_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	5.3e-251	99.8
WP_000215412.1\|61661_62303_-	DNA-binding protein	J9Q6D4	Salmonella_phage	1.8e-109	99.5
WP_000176291.1\|62498_62765_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
62368:62384	attR	NA	NA	NA	NA
WP_000129634.1\|62774_63665_-	hypothetical protein	J9Q7I6	Salmonella_phage	4.0e-168	99.3
WP_001113021.1\|63670_63925_-	hypothetical protein	J9Q7U0	Salmonella_phage	4.1e-41	98.8
WP_000049963.1\|63917_64556_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	5.5e-111	99.1
WP_000164561.1\|64552_65221_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.1e-114	99.5
WP_011011100.1\|65220_65919_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	1.9e-125	99.6
WP_000218382.1\|65983_67543_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	5.7e-295	99.4
WP_001291547.1\|67545_67824_+	hypothetical protein	J9Q7T9	Salmonella_phage	3.4e-41	98.9
WP_000683475.1\|67883_68306_+	hypothetical protein	J9Q806	Salmonella_phage	8.2e-63	85.7
WP_000182009.1\|68310_68838_+	transcriptional regulator	J9Q6L0	Salmonella_phage	4.1e-80	96.6
WP_000072873.1\|69472_70123_+	hypothetical protein	J9Q754	Salmonella_phage	1.4e-114	100.0
WP_000234274.1\|70207_70435_+	hypothetical protein	NA	NA	NA	NA
WP_001009195.1\|71066_71549_-	hypothetical protein	J9Q805	Salmonella_phage	5.5e-87	96.9
WP_072089478.1\|71754_71952_-	hypothetical protein	J9Q753	Salmonella_phage	8.6e-31	93.8
WP_000218787.1\|72162_72555_-	hypothetical protein	J9Q7I1	Salmonella_phage	1.7e-41	65.4
WP_000786235.1\|72683_72995_-	hypothetical protein	J9Q7T7	Salmonella_phage	1.1e-45	92.2
WP_000559556.1\|73071_73386_-	hypothetical protein	NA	NA	NA	NA
WP_160859106.1\|73480_73696_-	hypothetical protein	J9Q804	Salmonella_phage	4.1e-34	97.2
WP_158643032.1\|73766_74081_+	DUF4084 domain-containing protein	NA	NA	NA	NA
WP_000104663.1\|74070_74313_+	hypothetical protein	J9Q751	Salmonella_phage	5.8e-37	92.5
WP_000132517.1\|75749_76940_-	hypothetical protein	J9Q803	Salmonella_phage	5.4e-120	54.6
WP_000916329.1\|76949_77267_-	hypothetical protein	J9Q750	Salmonella_phage	8.1e-47	80.0
WP_000534979.1\|77351_77618_-	hypothetical protein	J9Q7T5	Salmonella_phage	3.1e-31	71.6
WP_000860613.1\|77806_78010_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.5e-30	95.5
WP_000218758.1\|78070_78358_-	hypothetical protein	A5VWB2	Enterobacteria_phage	9.9e-28	58.8
WP_000861921.1\|78674_79217_-	hypothetical protein	J9Q748	Salmonella_phage	2.6e-93	93.1
WP_000086990.1\|79213_79855_-	HD domain-containing protein	J9Q7H7	Salmonella_phage	9.7e-116	100.0
WP_000766011.1\|79946_80318_-	hypothetical protein	J9Q7T4	Salmonella_phage	3.2e-63	100.0
WP_001291673.1\|80598_81288_-	hypothetical protein	J9Q6K2	Salmonella_phage	6.1e-124	98.3
WP_001090446.1\|81346_83032_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.9
WP_000333240.1\|83173_83746_-	hypothetical protein	J9Q7H6	Salmonella_phage	8.2e-98	98.9
WP_000462606.1\|83854_84697_-	hypothetical protein	J9Q7T3	Salmonella_phage	2.1e-70	71.1
WP_000872126.1\|84805_84994_-	hypothetical protein	J9Q800	Salmonella_phage	1.2e-26	100.0
WP_024134091.1\|85003_85498_-	hypothetical protein	J9Q6J9	Salmonella_phage	1.9e-79	96.3
WP_011011108.1\|85640_86249_-	ribonuclease HI	J9Q745	Salmonella_phage	2.2e-117	99.5
WP_000262979.1\|86834_87065_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.1e-36	100.0
WP_000559567.1\|87267_87861_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	4.6e-112	99.5
WP_024134092.1\|88046_88889_-	hypothetical protein	J9Q7Z9	Salmonella_phage	4.9e-107	85.4
WP_000208226.1\|89017_89575_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	7.0e-102	99.5
WP_000564632.1\|89584_90004_-	hypothetical protein	J9Q743	Salmonella_phage	2.9e-68	98.6
WP_000386471.1\|90067_90712_-	AAA family ATPase	J9Q7H4	Salmonella_phage	5.2e-117	100.0
WP_160859086.1\|90711_91182_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-89	100.0
WP_160859100.1\|91184_91580_-	hypothetical protein	J9Q7Z8	Salmonella_phage	3.9e-67	96.9
WP_000025635.1\|91599_92703_-	thymidylate synthase	J9Q6J6	Salmonella_phage	3.4e-217	98.4
WP_000673231.1\|92830_93760_-	hypothetical protein	J9Q742	Salmonella_phage	3.8e-161	99.0
WP_011011111.1\|93842_94985_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.4e-218	99.5
WP_000623686.1\|95092_97408_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.7
WP_000047571.1\|97485_98055_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.7e-103	99.5
WP_000009516.1\|98067_98814_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.4e-136	98.0
WP_160859089.1\|98803_99307_-	SMC family ATPase	J9Q741	Salmonella_phage	8.2e-86	99.4
WP_000174806.1\|100949_102035_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	2.7e-206	98.9
WP_000832167.1\|102263_102767_+	hypothetical protein	J9Q7Z6	Salmonella_phage	5.5e-90	98.2
WP_001288958.1\|102798_103293_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	2.3e-88	97.6
WP_000364575.1\|103368_104013_-	hypothetical protein	J9Q739	Salmonella_phage	2.4e-122	98.1
WP_001293470.1\|104757_105813_+	replication protein RepA	J9Q7H0	Salmonella_phage	1.5e-185	98.0
WP_154080930.1\|106018_106159_-	hypothetical protein	NA	NA	NA	NA
WP_024134093.1\|106341_106516_-	hypothetical protein	J9Q7S8	Salmonella_phage	9.5e-26	93.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_003384_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003384_1

29588-29745

Orphan

Consensus_repeat	Method
CCGTACCCGGTATAGTGGAT	PILER-CR

2 spacers

The CRISPR arrays of NC_003384_1

>merge|NC_003384|1|29588-29745|PILER-CR
CCGTACCCGGTATAGTGGATGAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAGGTTTACCCGGTATAGTGGATCGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAACCGTACCCGGTATAGTGGAT

>NC_003384|1|1|29588-29745|PILER-CR
CCGTACCCGGTATAGTGGAT	GAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAG
GTTTACCCGGTATAGTGGAT	CGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAA
CCGTACCCGGTATAGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003384.1\|WP_000704115.1\|29934_30450_-\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001277090.1\|34193_35870_-\|DUF4942-domain-containing-protein	unknown	unknown	gnl\|CDD\|372683
NC_003384.1\|WP_000362161.1\|18444_18912_-\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_000047134.1\|34002_34179_-\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001395483.1\|22104_22368_+\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001015069.1\|40515_41592_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272946
NC_003384.1\|WP_001096299.1\|20697_21474_+\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001281654.1\|36133_37291_-\|DNA-binding-protein	unknown	unknown	unknown
NC_003384.1\|WP_011011063.1\|26474_27077_+\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372706
NC_003384.1\|WP_000682872.1\|39593_40301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199908
NC_003384.1\|WP_001225593.1\|37650_38475_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NC_003384.1\|WP_001178650.1\|38489_39311_-\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_000357614.1\|40297_40498_-\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_000666931.1\|23839_26224_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NC_003384.1\|WP_032339737.1\|27088_27325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371986
NC_003384.1\|WP_001127353.1\|19771_20548_+\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_000178072.1\|22595_23300_+\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001395482.1\|21662_22004_+\|hypothetical-protein	unknown	unknown	unknown
NC_003384.1\|WP_001226764.1\|31100_33557_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NC_003384.1\|WP_000097746.1\|28467_29349_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|374546

Protein	Function_ID	Function_description	E-value
NC_003384.1\|WP_001277090.1\|34193_35870_-\|DUF4942-domain-containing-protein	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	2.85133e-16
NC_003384.1\|WP_000666931.1\|23839_26224_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	2.26735e-68
NC_003384.1\|WP_032339737.1\|27088_27325_+\|hypothetical-protein	gnl\|CDD\|371986	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	4.38686e-09
NC_003384.1\|WP_001015069.1\|40515_41592_-\|hypothetical-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.00163255
NC_003384.1\|WP_000682872.1\|39593_40301_-\|hypothetical-protein	gnl\|CDD\|199908	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40. Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.	0.000379412
NC_003384.1\|WP_001226764.1\|31100_33557_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	9.32876e-65
NC_003384.1\|WP_000097746.1\|28467_29349_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|374546	pfam16441, DUF5038, Domain of unknown function (DUF5038). This family consists of several uncharacterized proteins around 200 residues in length and is mainly found in various Clostridiales species. The function of this family is unknown.	0.000541832
NC_003384.1\|WP_001225593.1\|37650_38475_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	7.14985e-68
NC_003384.1\|WP_011011063.1\|26474_27077_+\|DUF4165-domain-containing-protein	gnl\|CDD\|372706	pfam13752, DUF4165, Domain of unknown function (DUF4165).	2.75477e-39

>NC_003384.1|WP_000097746.1|28467_29349_+|RepB-family-plasmid-replication-initiator-protein
MSSNNNKLSLVIEESLKDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKSHHIDATEPLSRLSIVEGEGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDKQLKERFDASLTRIARTNISFIKKIPGTDDQITINMHLVESTYYDSSTGKIIIKPNSKLNTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGNQNATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMKP
>NC_003384.1|WP_032339737.1|27088_27325_+|hypothetical-protein
MYHTYSKNSVKGAGIPDSNLDEDFTAKVVIYDNAGNTRTLPLQLFRYDNYLGGPRSAKLRQRGARGFRISGLFSWDDR
>NC_003384.1|WP_011011063.1|26474_27077_+|DUF4165-domain-containing-protein
MKNQAIALAMAMLGVSVPASAQIYESIFTDTNGIEVHAPSTRLLLNPASPVTLTLIAGLDRYVNVKITSATGTQLLNTTTTRTSVSDRLKAGDGSEFYGKKVTLPVLGEGRSVVQVSILDLNQSVVATYSYNWLVDTTPLSGNALTGNAAYGSTAGSVWKMGLEATGQFDFTSTNVTDVNGIEKGMFYVYHSNGSLFSTT
>NC_003384.1|WP_000666931.1|23839_26224_-|DUF4165-domain-containing-protein
MKFCRRPLIVAVYTALLFPLYSQAQLYNYSYTDTRGTKVNAEPTREYLNPGSAITLNLISGLDRYERVTVTRSSDNVQMFQSVTGLVTVADRITAADGSEYYGKSMTLPVLGEGTFSLKSETLDNKSNVVATTSYSFSIDITPPVLPDPMQWIRAGFQYGSLDIFGDRTATQAISLSNVSDARSGLDKAEWFAIDSSGVRRTVNAQLNALTGVVQALAAVAAGSTVAPVSPAYYTVGFRVYDKAGNWTETSHRSGIDRTIPSYIQHQVRNAKTGVWEDYVPGMTIFENPVKFRYKRLKSDSTNFNGTDFGWVDQITNSDNTYFYTEATVSYPETYMYYELHTKAGLNVNLQYKTLKFTPGNGVAEAPRYLSGQYHFRDANTWTSSDIVRFTGPDCVDLGRVNVEPRSYVQTATIVGIGSCNVSVGESSCQVSMNYCKTSGKGYVPYQIHIRGTGSYANLGGLQSHFYTYWDMNAPVINSIVSSPLDKTVVMLVTDSDVTNDWTNYMWATNIFNLTLKDTSNKVSTLSPKNVTVLNYQLKQVTFDYSALPSGKYTATGAATDTYNNTAELTLSNTILHDVTPPVVDISFEGKQADGALVKGLENLVITLADDMTKASLKSITLSGGPTSDKVSVGWYSQGTDKYGLNYPRIFPATDDADSYQLTAVAVDEAGNTTTKVSRFRYVPNNLIEFNTLKTLAVGMGLKTSDNQPLAYLRTNSIRKKDGSLITGAQTGTLTVRKDAAFAVSMNGVAVVPGDSKDITIDFGQGDGVLIPIFPATSGNVGESSFMIELPQIQ
>NC_003384.1|WP_000178072.1|22595_23300_+|hypothetical-protein
MTMKNTVIPTVTENEMGEVITRHSAYGLVSVSRTSTTGQRLYASDLSHKEVVTMTFSESEQIERDGVIRHRLAEGRRRSPLLQVSLSPAQWATMITSFGMSDGVPCTINSLIRGDYERQPEIGYIESTRERYERQIREAAEREMAKLHEKLEVLRLLAVKGKAGKRELDEAYQSLLSVINNLPVNLAFTNQLIQESMVNIVSHGKAELEATAMGVAARLGMKEMSSLASLEEKK
>NC_003384.1|WP_001395483.1|22104_22368_+|hypothetical-protein
MTNANANDGKTSPVLPTLEQVYALLKANYKPARFADRDGEIWGHEYSWNLARSSLQDLEKYGKSYVSKHSDRMGDGFSFGPDLVIIR
>NC_003384.1|WP_001395482.1|21662_22004_+|hypothetical-protein
MRELLGMAGAEHQASVMYQTFGHLDAKLGEKHKGHFVFINGQHGDLCVVHSEFSSFDEGPGYFSDRADFIWELVKNDGPCSKVGIYRFDGEYALPKRRNGRRFSGSVTCLQAF
>NC_003384.1|WP_001096299.1|20697_21474_+|hypothetical-protein
MAKLISTRELATIITALLVKPELLGELDSPEKHRALMEDLGRVVAEHCGGNVTEIALPETDGTAAEGALQNGQPVRYLETKESSPYLIVHPDASLPSVTQNVWMHADHDGWEEHFNGETDALTPEMSEQFRQQVYALLTPESHTTSSEMRLTLQDWQLGEAEIPEEDCQPYQVKVLAENKNVQCEVTNETGTTCFGLILEIDRGVPTLHIDTGSDSLLHIHAAHDGLVLTPDAPSHRFEDAPVDRFSYNSPSLLVPGV
>NC_003384.1|WP_001127353.1|19771_20548_+|hypothetical-protein
MPKYLLPAELAEIVCGLLVQPALLNELKTPATHKAFMQDIGELVAKHCGGQIDGVIMPEVRDEDSQADYLTSPDETPYIVVSPGQDMHSLTDNVWRHHARDGWLDHIKGSVEESPDELPTHKECAVRRYTLQRLLLQEETSHANLPVQVVRMCEYSTDDVEQTDSSAEFNVTMALGGHAMLAVKDTDSRLVMALTLLIENGVPSVHVNAGDTDPSVLHIRAAHGGLVLSTDSLNHDFSISPSDQYTYGRPGLLLKAAY
>NC_003384.1|WP_000362161.1|18444_18912_-|hypothetical-protein
MDKYFDRSGMAIDNAKIKCIDSVKGTGEYIYRVTCNKCNGRGERNHFYKSRCIACNATGYSLVTTRTCYTLTALYRIYPEAARKISAAQAAERQRAVQSKTSAFNLWCQNHQELVDAITQQDGENSFLNSLKSTLSRKFPLSDKQLTVAARILGM
>NC_003384.1|WP_000704115.1|29934_30450_-|hypothetical-protein
MKISTGMMKSNAPLIILICLMIAFSAYVKSWSLLYTLLAASVSLTVMISLPFIVSPLQHSKFIALRILRLLVITLWTIGLVGVFFSVVERLVWVNADSYPAWLAKELDSPAITDGENFIKATESFEKICGKNKGYLSVVTKHNGIFMRCDDSLSFDSWWKGVYRLKTPETR
>NC_003384.1|WP_001226764.1|31100_33557_-|DUF4165-domain-containing-protein
MRKILTGCIIATAIASVYPAAAQIFSYSYTDTNQLAKTLKPATQSYLNPASTMTLNLISGLDRYERVSVTRDSDKKVMYSAVTGKISVADRIVAADGTEYYGKDLALPALGEGAFTVINDTLDLQQAVVSSSTYHFTIDTTAPKYTSIYPSQNAGYEMVLSGPVWGLGRGGSGQFSIFADGVDDANGIDKIRLVIKRGNGTVVSDNTLSYDTAAKRAFYPWIKDSVTQPGMPTSDLNEEFTFNFIITDKAGNTLNIPPQRFLFDDQIGEYTPFAVHDSRVSTSVVPGISSGYVPFVRGLSVLENPYRMVIRIPRTNWKPYRNGGITILNNYGGAKVISEDTTYVYVEVKLPQGALDINYYRPVNTYQWSGGDLTQYASWLNWDPASVKSPAWGSPAIERQMSDGTWFNSVNWKYFKASDMPVNLTQIRFNVQARPYDQKITGGATCNIPAGSTSCTVALTQAITNGTTGYLHSGYEVRSTTESTFFMPIWENVVWHTLGPSVTGYDYNDTTNILQVYINQPGDGSYFDTVKLSRVWLSDKSRNNADINVTGTLTGRNTATGNYTYEFNLKLIPEGSYNVQLNAQDSFNNTGSLDYKTVTVDNTPPSISISYETKPITSSVTVYGLENIRIQLADTLTKPSLTRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNDGETYTLTVQAKDEMNNVKESAVEFSYLPNNLVRLENLKTISVSTALKTSDDTPLAVLYASQLRKKDGSIATGKQDAILTVRKDAAFGVTVNGVSAAPGESKNVQLDLGLGDSRSFPIFPSTSGVVGTSEFMLNIEELK
>NC_003384.1|WP_000047134.1|34002_34179_-|hypothetical-protein
MSKSSPVLPEDRDDIEFVMDDFQRSLGKSKPVREVQFLGESQQSEESANSADSPWFES
>NC_003384.1|WP_001277090.1|34193_35870_-|DUF4942-domain-containing-protein
MSAVESDSLPMGAPGSSLVAYMPHTGLLINDDNFLPEMREELDVINRQVESYNDELSLLRSMSAQFLKCGNQKLYSYLSGYNHLISEADASYAENALRSEYWKRVMALTDVLSVMSDEKKKEWDKQFTADRYHLPPQEIPDFTLDAVVTTVVALLNDRHQFIKDRVYAVFQSLSRQHKTNKAFGFSTRMITSGVCEGVKDKWVKLKVEFKESGLMPLSELRVICSYFRGETVKPVYDTKKMVENMVGHVGFRNWISLDGNSIRFRVYKNGSMHIDVHPDIAERLNNILAAIVPLALPAERVAHTKATLQEFPALKRCIDFHSRMQLAELDFTQNEKEWSSWTSLGYAGENADKTRQVNADVLRFLGARVTSYHVTFDYDPTEVMRFIGHMGAMPDIKSHQFYPSSARLSEYVASIIAAGEGERLLEPNIGHGDLLQCFPKSVNVTGIELDTLNCLVSRAKGYETTEADFLAWSAANQIQKFDCVVMNPPFADNRAKLHLLAAASHLVPGGRLAAVLPLSLQGIDNLLGEGFRTEWMDTFDNEFDNTAVSVRVLYAERF
>NC_003384.1|WP_001281654.1|36133_37291_-|DNA-binding-protein
MSDLMTDSQQQTNSRVFKSPLVSFSTVTGSGRFVSGMKQFRDANPDLCNEVTEQKAWAISPTVVQITEGFNSREMGMGEAYYQLPEVADHLNNIKNAYIRGDYVDPIRVLIKDGIPYVRQGHCRLKAALMAVAEGHSNLTILCIEMKADEISCELTTIDGNRGLALSPVALGESYRRLQALGGWSLDRIAEREGKSNTTIAALIRLTGCCVYLKKLIHADAISYVAVLSLIDEFGETEAVARIEKMIADLEKADSSGIQIKKTPRGQIRVVPSDFKPARVPPVLATKAVEGVKLITTSLLQKLGDIELPEVTDSSEDEEITFTLNRSMLEMLKNLQSEITESENKQLRRAENRQARLKGEKVTYKTKKNDKNGGEPQSETPPAQA
>NC_003384.1|WP_001225593.1|37650_38475_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MRKHTPIIKWAGGKTKLMPFLSKHFPHDKSRRWVEPFIGGGAVFLNMFATEALLADSNPDLINLYRNIQRNKPAFIREVQLLAERHFEEEDYYVLRNTFNSTSFDDAPLQRAAIFYAMNRLGYNGLCRYNLKRKFSVPWGKRYQFSLDIQKVDYLSFRLSSVELKTADFGQTLEFAGGGDQIYCDPPYDKISKTSFVSYDGIPFDKSAHVKLADMLVDANRKGASVAISNSMTPFTLELYEERGFDIHTHNAYRSVGSQSKSRKKEIEILAVLR
>NC_003384.1|WP_001178650.1|38489_39311_-|hypothetical-protein
MQNDLGLGFIRKSARTSAKIISRKVTFPLDDLDNAKLTLTGLQCHPSCRFPFYQLSMLIHNQLAEHGVISADENAPFTVSISIHEWLSRARVAFIDYHGLRNSDKTVMITRAHLEELLTYLSTTLAVYVPYSKKRLNFSFLTSFTLVKTSQSYTLTFPGVLRPFLMLLGGLIQEFMTEKLLKRRNAQFVIFDYLRKSRRHSHKITDIVNDLQLHTVNVRIMNVLTQLADQGFISFICEGKRGERSIEELQFIPYASRDHSEVLSFEEWISPID
>NC_003384.1|WP_000682872.1|39593_40301_-|hypothetical-protein
MKHSLFFTQDGYLLPSSVKPIYGKDGHYYAVITRECFECGGTGKIANAVCVTCNGSKTSPATEEKLVLKECIEFLETIPELRCNPDLEAWKRRHSEQLALLQADNSKFAASIAQQLNNNLFLTVRQLESFYSTYQPVSEAFSENAGFPIEHSFNIGDVVSFDIIFTEVRAAFSKGSHSYFFTFTGKKQNDGFALTGNVQDHVLLGHSYHLSGKVRKIHYFDSVPYALLTVFKLTA
>NC_003384.1|WP_000357614.1|40297_40498_-|hypothetical-protein
MDKIAQFTVINTYNDLLITKGTLDRNIEEIKAGKRFDHFEEGHDQYVQKVTDALQLVEARLENLKK
>NC_003384.1|WP_001015069.1|40515_41592_-|hypothetical-protein
MNHCDYQIIEISPKALFIESGFNPREAVIGELCYEQEPVKSTIVSIKQAYKEGRRVDLIKVVKKDSNYVVRQGHCRYRALSLALAEGADIQLISVVVMNYKNKSEEYLENLDGNRNNGLNPVALAYALAEALKLGSTVESLAMRYQRSSTAIRNQLKILDMPLELQRLISLNLIKKTLAIEIMLKYSNDHAKVLAHLESCSLLVPSTEPEPVLSKTSSVQTSSNDEKLDNPETLPVHVIPKEVKTKSITRSSLGIKRLSHKKTERLKTEFIGLIDTVRPALNDSNKLTELIFDGQHSNLFTNISSTSITKTTESVKITLDEAKLQLLLSLLNDENTAIIIPKSKVTELHEIRDLLTSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81476-81526	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	182983-183033	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180762-180812	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96276-96326	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235796-235846	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42635-42685	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152742-152792	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142863-142913	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133710-133760	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117174-117224	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192529-192579	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11544-11594	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77135-77185	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247816-247866	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175824-175874	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29608-29658	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195030-195080	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160405-160455	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229056-229106	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1240-1290	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150895-150945	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222888-222938	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157698-157748	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163625-163675	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139403-139453	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103197-103247	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_002305	Salmonella typhi plasmid R27, complete sequence	54047-54097	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156262-156312	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	114948-114998	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99282-99332	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190141-190191	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186842-186892	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163174-163224	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95412-95462	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154888-154938	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135342-135392	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101555-101605	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111577-111627	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163625-163675	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192086-192136	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157699-157749	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237889-237939	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79517-79567	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106159-106209	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267735-267785	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173816-173866	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95376-95426	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230101-230151	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20571-20621	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1141-1191	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259337-259387	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210872-210922	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110178-110228	1.0
NC_003384_1	1.1\|29608\|51\|NC_003384\|PILER-CR	29608-29658	51	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111658-111708	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42568-42614	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152675-152721	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142796-142842	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133643-133689	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117107-117153	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192462-192508	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11477-11523	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150828-150874	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163558-163604	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139336-139382	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103130-103176	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_002305	Salmonella typhi plasmid R27, complete sequence	53980-54026	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190074-190120	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154821-154867	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135275-135321	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101488-101534	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163558-163604	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79450-79496	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230034-230080	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110111-110157	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81547-81593	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	183054-183100	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180833-180879	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96347-96393	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235867-235913	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77206-77252	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247887-247933	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175895-175941	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29679-29725	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195101-195147	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160476-160522	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229127-229173	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1311-1357	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222959-223005	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157769-157815	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156333-156379	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	115019-115065	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99353-99399	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186913-186959	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163245-163291	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95483-95529	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111648-111694	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192157-192203	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157770-157816	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237960-238006	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106230-106276	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267806-267852	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173887-173933	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95447-95493	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20642-20688	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1212-1258	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259408-259454	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210943-210989	1.0
NC_003384_1	1.2\|29679\|47\|NC_003384\|PILER-CR	29679-29725	47	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111729-111775	1.0

1. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

2. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

3. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

4. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

5. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

6. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

7. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

8. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

9. spacer 1.1|29608|51|NC_003384|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

10. spacer 1.1|29608|51|NC_003384|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

11. spacer 1.1|29608|51|NC_003384|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

12. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

13. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

14. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

15. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

16. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

17. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

18. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

19. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

20. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

21. spacer 1.1|29608|51|NC_003384|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

22. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

23. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

24. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

25. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

26. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

27. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

28. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

29. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

30. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

31. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

32. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

33. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

34. spacer 1.1|29608|51|NC_003384|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

35. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

36. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

37. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

38. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

39. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

40. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

41. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

42. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

43. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

44. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

45. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

46. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

47. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

48. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

49. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

50. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

51. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

52. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

53. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

54. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

55. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

56. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

57. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

58. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

59. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

60. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

61. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

62. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

63. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

64. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

65. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

66. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

67. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

68. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

69. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

70. spacer 1.1|29608|51|NC_003384|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

71. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

72. spacer 1.1|29608|51|NC_003384|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

73. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

74. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

75. spacer 1.2|29679|47|NC_003384|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

76. spacer 1.2|29679|47|NC_003384|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

77. spacer 1.2|29679|47|NC_003384|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

78. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

79. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

80. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

81. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

82. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

83. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

84. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

85. spacer 1.2|29679|47|NC_003384|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

86. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

87. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

88. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

89. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

90. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

91. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

92. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

93. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

94. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

95. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

96. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

97. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

98. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

99. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

100. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

101. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

102. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

103. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

104. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

105. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

106. spacer 1.2|29679|47|NC_003384|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

107. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

108. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

109. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

110. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

111. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

112. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

113. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

114. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

115. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

116. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

117. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

118. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

119. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

120. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

121. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

122. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

123. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

124. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

125. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

126. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

127. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

128. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

129. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

130. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

131. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

132. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

133. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

134. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

135. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

136. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

137. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

138. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

139. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

140. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

141. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

142. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

143. spacer 1.2|29679|47|NC_003384|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

144. spacer 1.2|29679|47|NC_003384|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

104514 : 125897

Escherichia_phage(22.22%)

integrase,transposase

attL 114519:114535|attR 125893:125909

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001086279.1\|104514_105696_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001324690.1\|105910_106123_+	hypothetical protein	NA	NA	NA	NA
WP_001447661.1\|106429_106705_+\|transposase	transposase	Q71TE9	Escherichia_phage	1.1e-44	96.7
WP_001119134.1\|106623_107127_+\|transposase	IS1 family transposase	U5P0U6	Shigella_phage	8.2e-94	98.8
WP_000807689.1\|107708_108464_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.9e-134	94.8
WP_001232452.1\|109948_111022_+	hypothetical protein	NA	NA	NA	NA
WP_005046357.1\|111278_111767_-	hypothetical protein	NA	NA	NA	NA
WP_000341067.1\|112434_112827_+	hypothetical protein	NA	NA	NA	NA
WP_000493077.1\|113239_113443_+	hypothetical protein	NA	NA	NA	NA
114519:114535	attL	NA	NA	NA	NA
WP_001166627.1\|114530_114986_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294656.1\|115057_115423_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|115438_115714_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|115741_116167_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|116205_117891_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|117908_118274_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087808.1\|118270_118507_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|118490_118610_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|118572_118785_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|119022_119787_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|119929_120196_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|120416_120890_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_000845048.1\|121045_122059_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001162012.1\|122364_122922_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138073.1\|122924_125897_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
125893:125909	attR	NA	NA	NA	NA

DBSCAN-SWA_2

143084 : 184438

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001352368.1\|143084_144293_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000502663.1\|144631_147967_+	hypothetical protein	NA	NA	NA	NA
WP_012817917.1\|148262_148484_+	hypothetical protein	NA	NA	NA	NA
WP_000537778.1\|148733_149120_+	hypothetical protein	NA	NA	NA	NA
WP_001447552.1\|149131_149557_-	hypothetical protein	NA	NA	NA	NA
WP_000534813.1\|149590_150064_-	hypothetical protein	NA	NA	NA	NA
WP_000406154.1\|150146_150437_-	hypothetical protein	NA	NA	NA	NA
WP_000974326.1\|151051_152449_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001447551.1\|152711_153518_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_000412211.1\|154526_155186_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|155386_155764_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000427623.1\|156074_157079_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001067855.1\|159702_160407_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_164920270.1\|160412_160673_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|160706_161411_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|161910_162771_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001387387.1\|162920_163322_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001067855.1\|163368_164073_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000240536.1\|164828_165680_+	replication protein	NA	NA	NA	NA
WP_001043265.1\|165987_166803_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
WP_001082319.1\|166863_167667_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|167666_168503_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001067855.1\|168563_169268_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001300294.1\|170657_171326_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|171361_171598_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|171594_171957_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|171974_173669_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001340589.1\|173720_174143_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732293.1\|174178_174454_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294663.1\|174467_174818_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000429836.1\|174889_175324_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427614.1\|175402_176407_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001089068.1\|177934_179140_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000088605.1\|179221_179845_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001447544.1\|179822_180509_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|180516_180903_-	hypothetical protein	NA	NA	NA	NA
WP_000562370.1\|180895_181216_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_001352368.1\|183229_184438_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_003198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_003198_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003198_1

2926182-2926567

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NC_003198_1

>merge|NC_003198|1|2926182-2926567|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003198|1|1|2926182-2926567|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG	TTTATCCCCGCTGGCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003198|1|1|2926182-2926567|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG	TTTATCCCCGCTGGCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003198|1|1|2926184-2926567|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACGG	ACAGCAACCCGTGTCGGATATCAGACAGATCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	GCGAATCGCCAATCGCCGCCGCGTGAATTGCG
GTTTATCCCCGCTGGCGCGGGGAACACCC	ACGATGTATGCCGACCGTGATTTTTACCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	ATACGCCTTTACGTCGCCCTCTTTGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACTA	AAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003198.1\|WP_000517480.1\|2921044_2921356_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_003198.1\|WP_000134253.1\|2918790_2919840_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_003198.1\|WP_000080392.1\|2937018_2937753_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_003198.1\|WP_001092273.1\|2922512_2923952_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_003198.1\|WP_000490486.1\|2925120_2926167_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_003198.1\|WP_001681565.1\|2929303_2930362_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_003198.1\|WP_000935107.1\|2930384_2930987_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_003198.1\|WP_000118669.1\|2926947_2927865_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_003198.1\|WP_001291998.1\|2937828_2939541_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_003198.1\|WP_000741649.1\|2920315_2921026_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_003198.1\|WP_001219244.1\|2919836_2920316_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_003198.1\|WP_000666425.1\|2928568_2929294_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_003198.1\|WP_001118109.1\|2921546_2921903_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_003198.1\|WP_000062282.1\|2926651_2926945_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_003198.1\|WP_000281411.1\|2927864_2928569_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NC_003198.1\|WP_000366321.1\|2931003_2932539_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_003198.1\|WP_000372384.1\|2923961_2924870_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_003198.1\|WP_001145541.1\|2935977_2936931_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_003198.1\|WP_001221538.1\|2918048_2918810_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_003198.1\|WP_001173663.1\|2921920_2922526_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NC_003198.1\|WP_000517480.1\|2921044_2921356_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_003198.1\|WP_000134253.1\|2918790_2919840_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_003198.1\|WP_000080392.1\|2937018_2937753_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
NC_003198.1\|WP_001092273.1\|2922512_2923952_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_003198.1\|WP_000490486.1\|2925120_2926167_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_003198.1\|WP_001681565.1\|2929303_2930362_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
NC_003198.1\|WP_000935107.1\|2930384_2930987_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NC_003198.1\|WP_000118669.1\|2926947_2927865_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NC_003198.1\|WP_001291998.1\|2937828_2939541_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_003198.1\|WP_000741649.1\|2920315_2921026_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NC_003198.1\|WP_001219244.1\|2919836_2920316_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NC_003198.1\|WP_000666425.1\|2928568_2929294_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NC_003198.1\|WP_001118109.1\|2921546_2921903_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NC_003198.1\|WP_000062282.1\|2926651_2926945_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NC_003198.1\|WP_000281411.1\|2927864_2928569_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
NC_003198.1\|WP_000366321.1\|2931003_2932539_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_003198.1\|WP_000372384.1\|2923961_2924870_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_003198.1\|WP_001145541.1\|2935977_2936931_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_003198.1\|WP_001221538.1\|2918048_2918810_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_003198.1\|WP_001173663.1\|2921920_2922526_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146

>NC_003198.1|WP_000490486.1|2925120_2926167_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_003198.1|WP_000372384.1|2923961_2924870_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_003198.1|WP_001092273.1|2922512_2923952_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_003198.1|WP_001173663.1|2921920_2922526_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_003198.1|WP_001118109.1|2921546_2921903_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_003198.1|WP_000517480.1|2921044_2921356_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_003198.1|WP_000741649.1|2920315_2921026_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_003198.1|WP_001219244.1|2919836_2920316_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_003198.1|WP_000134253.1|2918790_2919840_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_003198.1|WP_001221538.1|2918048_2918810_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_003198.1|WP_000062282.1|2926651_2926945_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NC_003198.1|WP_000118669.1|2926947_2927865_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NC_003198.1|WP_000281411.1|2927864_2928569_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NC_003198.1|WP_000666425.1|2928568_2929294_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NC_003198.1|WP_001681565.1|2929303_2930362_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NC_003198.1|WP_000935107.1|2930384_2930987_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NC_003198.1|WP_000366321.1|2931003_2932539_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NC_003198.1|WP_001145541.1|2935977_2936931_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_003198.1|WP_000080392.1|2937018_2937753_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_003198.1|WP_001291998.1|2937828_2939541_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246606-246628	1	0.957
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246667-246689	1	0.957
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246728-246750	1	0.957
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246789-246811	1	0.957
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246850-246872	1	0.957
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246362-246384	2	0.913
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246423-246445	2	0.913
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246484-246506	2	0.913
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246545-246567	2	0.913
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246911-246933	2	0.913
NC_003198_1	1.6\|2926516\|23\|NC_003198\|CRISPRCasFinder,CRT	2926516-2926538	23	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	32175-32197	4	0.826
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NC_003198_1	1.3\|2926333\|32\|NC_003198\|CRISPRCasFinder,CRT	2926333-2926364	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NC_003198_1	1.9\|2926335\|32\|NC_003198\|PILER-CR	2926335-2926366	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NC_003198_1	1.5\|2926455\|32\|NC_003198\|CRISPRCasFinder,CRT	2926455-2926486	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.957

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctggcgcggggaa	Protospacer
**********************

2. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.957

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctggcgcggggaa	Protospacer
**********************

3. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.957

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctggcgcggggaa	Protospacer
**********************

4. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.957

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctggcgcggggaa	Protospacer
**********************

5. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.957

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctggcgcggggaa	Protospacer
**********************

6. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.913

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctgacgcggggaa	Protospacer
*************.********

7. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.913

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctgacgcggggaa	Protospacer
*************.********

8. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.913

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctgacgcggggaa	Protospacer
*************.********

9. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.913

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctgacgcggggaa	Protospacer
*************.********

10. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.913

tttatccccgctggcgcggggat	CRISPR spacer
tttatccccgctgacgcggggaa	Protospacer
*************.********

11. spacer 1.6|2926516|23|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 4, identity: 0.826

tttatccccgctggcgcggggat	CRISPR spacer
gccatccccgctggcgcggggaa	Protospacer
 ..*******************

12. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

17. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

18. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

19. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

20. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

21. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

22. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

23. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

24. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

25. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

26. spacer 1.3|2926333|32|NC_003198|CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

27. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

28. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

29. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

30. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

31. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

32. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

33. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

34. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

35. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

36. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

37. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

38. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

39. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

40. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

41. spacer 1.9|2926335|32|NC_003198|PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

42. spacer 1.5|2926455|32|NC_003198|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

241499 : 306428

uncultured_Mediterranean_phage(11.11%)

tRNA,protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753959.1\|241499_242927_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	2.1e-25	28.8
WP_000929458.1\|243079_244237_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272193.1\|244325_244712_-	DUF3461 family protein	NA	NA	NA	NA
WP_001186669.1\|246297_247122_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094518.1\|247151_249824_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018214.1\|249936_250731_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246886.1\|251180_251906_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000808106.1\|252163_253015_+	elongation factor Ts	NA	NA	NA	NA
WP_000224567.1\|253159_253885_+	UMP kinase	NA	NA	NA	NA
WP_000622423.1\|254031_254589_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811892.1\|254730_255927_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_000947409.1\|256239_256998_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	2.5e-25	42.2
WP_000922422.1\|257010_257868_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000949016.1\|257879_259232_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240921.1\|259263_261675_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758966.1\|261797_262283_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139265.1\|262286_263312_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210741.1\|263417_263873_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000566033.1\|263876_264665_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000741216.1\|264664_265813_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569412.1\|265809_266406_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.5e-25	39.3
WP_001294828.1\|266429_269912_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	4.8e-209	36.9
WP_000055753.1\|269924_270884_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_000502118.1\|271075_271534_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_001021059.1\|273612_275754_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901086.1\|275809_276199_+	VOC family protein	NA	NA	NA	NA
WP_000210062.1\|276261_277554_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062330.1\|277637_277898_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000955207.1\|277884_278103_-	YaeP family protein	NA	NA	NA	NA
WP_001185319.1\|278282_278828_+	YaeQ family protein	NA	NA	NA	NA
WP_000560526.1\|278824_279247_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000252574.1\|279278_279980_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000502118.1\|280087_280546_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_001260683.1\|280764_282483_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000093978.1\|282593_283301_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202315.1\|283297_283702_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874217.1\|283820_284636_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001287483.1\|284674_285328_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000594016.1\|285320_286352_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	1.2e-35	40.2
WP_001140158.1\|286541_287108_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000154870.1\|292893_293697_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.7e-38	35.4
WP_000648539.1\|293717_294632_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001127546.1\|294736_295912_+	MFS transporter	NA	NA	NA	NA
WP_001230964.1\|296043_296844_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000207227.1\|296921_297692_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644706.1\|297747_299115_-	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
WP_001052766.1\|299186_299942_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000801233.1\|299976_300699_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917872.1\|300695_301163_-	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_001670675.1\|301226_301958_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000145233.1\|303552_304548_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000371495.1\|304544_306428_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

930309 : 937621

Dickeya_phage(16.67%)

protease,integrase

attL 931560:931574|attR 942739:942753

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201759.1\|930309_931428_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125880.1\|931424_933371_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
931560:931574	attL	NA	NA	NA	NA
WP_000447499.1\|933500_933722_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|934045_934366_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934058.1\|934396_936673_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_001117984.1\|936884_937082_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|937243_937621_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
942739:942753	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1008746 : 1085795

Salmonella_phage(76.67%)

protease,holin,tail,terminase,transposase,integrase

attL 990825:990844|attR 1061156:1061175

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
990825:990844	attL	NA	NA	NA	NA
WP_001262313.1\|1008746_1010039_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	5.0e-252	99.8
WP_000065276.1\|1010083_1010332_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001754984.1\|1010372_1010612_-	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_010989138.1\|1010617_1011499_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_000034527.1\|1011495_1012560_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_000187053.1\|1012637_1013318_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_001764962.1\|1013314_1014100_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000995349.1\|1014105_1014402_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_000186242.1\|1014492_1014693_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_001009036.1\|1014981_1015386_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000869365.1\|1015515_1015752_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001574095.1\|1015717_1016092_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_001681803.1\|1016176_1017160_+	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_000800010.1\|1017162_1017912_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113623.1\|1017922_1018270_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000065105.1\|1018266_1018791_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000445792.1\|1018790_1019264_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000208074.1\|1019267_1019840_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_000509711.1\|1020685_1020865_+	hypothetical protein	NA	NA	NA	NA
WP_000963896.1\|1020875_1021373_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_001217670.1\|1021557_1021797_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_001804676.1\|1021852_1022092_+	hypothetical protein	H6WRY6	Salmonella_phage	5.9e-42	100.0
WP_000929790.1\|1022131_1022734_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096560.1\|1022942_1023554_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_001617856.1\|1023550_1023697_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047634.1\|1023686_1024484_+	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001534733.1\|1024882_1025008_+	hypothetical protein	NA	NA	NA	NA
WP_000798706.1\|1025143_1025593_-	lipoprotein	NA	NA	NA	NA
WP_001294876.1\|1025809_1026199_+	membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000226307.1\|1026185_1026467_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001075998.1\|1026466_1027081_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_001050879.1\|1027077_1027617_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_000495544.1\|1027659_1028037_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001070544.1\|1028133_1028361_+	hypothetical protein	NA	NA	NA	NA
WP_001118118.1\|1028450_1029203_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_000204794.1\|1029168_1030572_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_000113512.1\|1030571_1032038_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	6.4e-272	96.7
WP_000184964.1\|1031928_1032663_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	2.3e-100	87.6
WP_000873168.1\|1032677_1033898_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.2e-199	88.0
WP_001066732.1\|1033901_1034408_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.7e-70	79.9
WP_000627487.1\|1034419_1035361_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.2e-155	86.9
WP_001040696.1\|1035401_1035770_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.8e-53	87.7
WP_000042171.1\|1035735_1036143_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	9.7e-69	94.8
WP_000008731.1\|1036139_1036694_+	hypothetical protein	A0A0M4S631	Salmonella_phage	8.0e-66	71.7
WP_001142480.1\|1036680_1037070_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.5e-66	96.1
WP_000503648.1\|1037044_1037608_+	hypothetical protein	A0A0M4R331	Salmonella_phage	1.7e-79	75.7
WP_000046938.1\|1037611_1038757_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.0e-160	73.5
WP_000109249.1\|1038767_1039208_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
WP_000393954.1\|1039211_1039664_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	4.7e-56	72.7
WP_000990884.1\|1039841_1041830_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.0e-272	74.8
WP_010989141.1\|1041829_1042417_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.5e-83	88.0
WP_000155119.1\|1042416_1042719_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
WP_000081737.1\|1042721_1043789_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	7.7e-158	82.8
WP_000758867.1\|1043788_1044142_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.0e-29	86.5
WP_000050470.1\|1044291_1045023_+	hypothetical protein	NA	NA	NA	NA
WP_000110002.1\|1045022_1045451_+	hypothetical protein	NA	NA	NA	NA
WP_000301087.1\|1045515_1046268_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	3.2e-86	65.5
WP_001270632.1\|1046267_1046621_+	hypothetical protein	A0A0M4R339	Salmonella_phage	9.0e-55	89.7
WP_001197078.1\|1046620_1047820_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.2e-205	93.0
WP_000049938.1\|1047816_1048497_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001681975.1\|1048496_1050008_+	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000421106.1\|1050022_1050541_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_000480169.1\|1051462_1052164_-	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_000193884.1\|1053180_1055793_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
WP_000291724.1\|1056000_1057011_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1057176_1057719_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224084.1\|1057715_1058825_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086472.1\|1058923_1061032_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-20	29.6
WP_000053045.1\|1061044_1062952_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1061156:1061175	attR	NA	NA	NA	NA
WP_000333152.1\|1062966_1064220_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433416.1\|1064224_1065865_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1065861_1066425_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001764860.1\|1066678_1066846_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1066945_1067464_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156455.1\|1067532_1069293_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877174.1\|1069478_1069931_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_010989142.1\|1070002_1071055_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1071409_1071919_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202371.1\|1072135_1072741_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950867.1\|1072727_1074881_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1074899_1075346_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420526.1\|1075469_1077524_+	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_000424187.1\|1077559_1078018_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1078112_1078775_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1078948_1079362_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1079406_1079724_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140485.1\|1079781_1080993_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000502118.1\|1082124_1082583_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000072884.1\|1083319_1083601_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1083597_1083927_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|1084013_1084673_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000502118.1\|1085336_1085795_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1529646 : 1603243

Burkholderia_virus(39.02%)

tRNA,protease,plate,tail,transposase,capsid,integrase

attL 1519976:1519991|attR 1575848:1575863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1519976:1519991	attL	NA	NA	NA	NA
WP_000502119.1\|1529646_1530105_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000431187.1\|1530061_1530244_-	hypothetical protein	NA	NA	NA	NA
WP_001766314.1\|1530637_1530889_+	acid shock protein	NA	NA	NA	NA
WP_000549642.1\|1531157_1531979_+\|protease	serine protease	NA	NA	NA	NA
WP_001183821.1\|1532013_1532343_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000500278.1\|1532329_1532692_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001118268.1\|1533108_1534143_+	AI-2E family transporter	NA	NA	NA	NA
WP_000014056.1\|1534317_1535706_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_001219360.1\|1535716_1537246_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000769298.1\|1537772_1538717_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001281695.1\|1538898_1539288_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000988475.1\|1539259_1539712_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.2e-24	46.6
WP_010989166.1\|1539701_1539917_-	hypothetical protein	NA	NA	NA	NA
WP_000631816.1\|1539906_1540137_-	hypothetical protein	NA	NA	NA	NA
WP_000131941.1\|1540133_1540817_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
WP_153781233.1\|1540813_1541014_-	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|1541021_1541405_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_000197790.1\|1541401_1541704_-	hypothetical protein	NA	NA	NA	NA
WP_000632575.1\|1541713_1541986_-	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|1542274_1542805_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000843446.1\|1542832_1543102_-	hypothetical protein	NA	NA	NA	NA
WP_000960673.1\|1543104_1544271_-	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-122	59.7
WP_000990529.1\|1544281_1546051_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
WP_000567456.1\|1546054_1546219_-	hypothetical protein	NA	NA	NA	NA
WP_001765083.1\|1546228_1546660_-	hypothetical protein	A4JWN3	Burkholderia_virus	4.5e-32	57.3
WP_100208317.1\|1546655_1547252_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000793143.1\|1547495_1547846_+	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_000264664.1\|1548560_1549211_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_000175097.1\|1549207_1549534_+	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000227700.1\|1549533_1549845_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|1549844_1550390_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_029246253.1\|1550449_1551982_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.0e-184	62.6
WP_000090679.1\|1551981_1553478_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
WP_000117561.1\|1553458_1554280_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000135515.1\|1554282_1554741_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.2e-30	44.8
WP_001273072.1\|1554955_1556071_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_001286905.1\|1556085_1557039_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_000537457.1\|1557048_1557387_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|1557388_1557835_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|1557834_1558299_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_001789770.1\|1558295_1558550_+	hypothetical protein	NA	NA	NA	NA
WP_000729859.1\|1558539_1559967_+\|tail	tail protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
WP_162828734.1\|1559963_1560488_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	4.7e-68	67.2
WP_000110118.1\|1560490_1560772_+	hypothetical protein	NA	NA	NA	NA
WP_000084228.1\|1560869_1561205_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001148841.1\|1561149_1561287_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000135574.1\|1561380_1563846_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
WP_000458383.1\|1563845_1564730_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_010989167.1\|1564726_1564942_+	membrane protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000808000.1\|1564929_1566084_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000148263.1\|1566080_1566608_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000859114.1\|1566664_1567012_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
WP_001219103.1\|1567002_1568106_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
WP_000852584.1\|1568098_1568677_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
WP_000002046.1\|1568679_1569705_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.6e-64	53.3
WP_001802272.1\|1569715_1570219_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	2.3e-43	54.0
WP_001057643.1\|1570218_1570836_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
WP_024131174.1\|1570842_1571319_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.9e-44	56.4
WP_024134057.1\|1571329_1571791_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	5.9e-38	53.9
WP_024131173.1\|1571801_1572275_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	4.3e-36	53.0
WP_001165548.1\|1572346_1572919_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
WP_000412353.1\|1573198_1574581_+	amino acid permease	NA	NA	NA	NA
WP_000524877.1\|1574642_1574978_-	GlpM family protein	NA	NA	NA	NA
WP_001080045.1\|1575104_1575836_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_000924582.1\|1575900_1576200_-	hypothetical protein	NA	NA	NA	NA
1575848:1575863	attR	NA	NA	NA	NA
WP_000824321.1\|1576316_1577468_+	porin OmpS2	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
WP_000928668.1\|1577620_1579327_+	amidohydrolase	NA	NA	NA	NA
WP_001681605.1\|1579437_1580739_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	5.7e-14	22.7
WP_000092483.1\|1580814_1581744_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_000259129.1\|1581740_1583144_-	class II fumarate hydratase	NA	NA	NA	NA
WP_000066606.1\|1583311_1584958_-	class I fumarate hydratase	NA	NA	NA	NA
WP_001170615.1\|1585157_1586333_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000753325.1\|1586435_1587944_+	YdgA family protein	NA	NA	NA	NA
WP_077949083.1\|1588064_1588283_+	PTS maltose transporter subunit IIBC	NA	NA	NA	NA
WP_000565566.1\|1588649_1589651_+	adenosine deaminase	NA	NA	NA	NA
WP_000998242.1\|1589724_1590765_-	oxidoreductase	NA	NA	NA	NA
WP_031608772.1\|1590972_1591098_+	division septum protein Blr	NA	NA	NA	NA
WP_000217946.1\|1591396_1591612_+	transcription modulator YdgT	NA	NA	NA	NA
WP_000214061.1\|1591700_1592141_+	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000133179.1\|1592217_1592799_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_001092600.1\|1592798_1593377_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000915582.1\|1593369_1595391_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_000231887.1\|1595391_1596450_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000920820.1\|1596453_1597074_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_001289628.1\|1597076_1597769_+	electron transport complex subunit E	NA	NA	NA	NA
WP_001030324.1\|1597768_1598404_+	endonuclease III	NA	NA	NA	NA
WP_000100913.1\|1599004_1600510_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_000765713.1\|1600614_1601220_+	glutathione transferase GstA	NA	NA	NA	NA
WP_000168626.1\|1601968_1603243_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_5

1784275 : 1788687

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|1784275_1784515_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001036668.1\|1784726_1784891_-	hypothetical protein	NA	NA	NA	NA
WP_001529135.1\|1785387_1786197_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001277616.1\|1786269_1786647_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158843.1\|1786794_1787337_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001766395.1\|1787528_1788257_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000281950.1\|1788273_1788687_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_6

1887875 : 1935921

Salmonella_phage(33.93%)

holin,tail,terminase,transposase,integrase

attL 1889181:1889196|attR 1940034:1940049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072073163.1\|1887875_1888220_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	2.2e-13	38.6
1889181:1889196	attL	NA	NA	NA	NA
WP_000421106.1\|1889470_1889989_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_001681975.1\|1890003_1891515_-	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000049938.1\|1891514_1892195_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001197093.1\|1892191_1893391_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	2.5e-213	97.2
WP_001270647.1\|1893391_1893745_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001685627.1\|1893985_1894741_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_001144794.1\|1894799_1895228_-	hypothetical protein	NA	NA	NA	NA
WP_000050472.1\|1895227_1895959_-	hypothetical protein	NA	NA	NA	NA
WP_000826019.1\|1896153_1896489_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000042301.1\|1896485_1897517_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000388505.1\|1897519_1897822_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000346974.1\|1897825_1898476_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000990867.1\|1898475_1900428_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000389047.1\|1900605_1901058_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000257259.1\|1901061_1901502_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_001135544.1\|1901513_1902659_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000389379.1\|1902662_1903226_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001142488.1\|1903200_1903590_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000008737.1\|1903576_1904131_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001125675.1\|1904127_1904535_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_001040702.1\|1904500_1904869_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_000627464.1\|1904910_1905852_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128060.1\|1905863_1906361_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873166.1\|1906365_1907598_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.4e-226	98.5
WP_000184960.1\|1907612_1908347_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	4.4e-96	84.7
WP_000113484.1\|1908237_1909704_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-261	92.4
WP_000204763.1\|1909703_1911107_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	3.2e-188	69.2
WP_001118116.1\|1911072_1911822_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	5.8e-11	73.3
WP_000113284.1\|1911879_1912065_-	hypothetical protein	NA	NA	NA	NA
WP_001688324.1\|1912208_1912601_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	7.4e-50	83.7
WP_001194115.1\|1912584_1913061_-	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	1.0e-85	96.2
WP_049800165.1\|1913064_1913400_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	4.0e-52	89.2
WP_129545669.1\|1913569_1913785_+	hypothetical protein	NA	NA	NA	NA
WP_001208722.1\|1913753_1914323_-	hypothetical protein	NA	NA	NA	NA
WP_010989188.1\|1914556_1915114_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	3.9e-52	77.9
WP_000640149.1\|1915386_1915941_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.3e-71	71.0
WP_000228038.1\|1915937_1916228_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
WP_000940304.1\|1916227_1916827_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.9e-107	93.0
WP_010989190.1\|1916898_1917150_-	hypothetical protein	NA	NA	NA	NA
WP_000882663.1\|1917388_1917601_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	9.6e-28	95.7
WP_001352368.1\|1917992_1919201_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000556392.1\|1919307_1920240_+	hypothetical protein	NA	NA	NA	NA
WP_001033794.1\|1920236_1920791_+	hypothetical protein	NA	NA	NA	NA
WP_000403774.1\|1920889_1921246_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	2.0e-57	95.8
WP_001141111.1\|1921303_1921726_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.7e-63	91.3
WP_000450685.1\|1921741_1922503_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.2e-117	88.5
WP_000788994.1\|1922525_1923272_-	ATP-binding protein	V5UQI5	Shigella_phage	2.0e-112	79.3
WP_000157974.1\|1923278_1924067_-	hypothetical protein	G9L6A8	Escherichia_phage	3.9e-42	65.0
WP_000702025.1\|1924144_1924567_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.4e-69	94.3
WP_001033914.1\|1924563_1924806_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	2.3e-17	62.1
WP_000410105.1\|1924902_1925322_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	3.1e-14	60.6
WP_061450975.1\|1925564_1925783_+	YdaF family protein	M4QQ57	Salicola_phage	2.5e-07	53.2
WP_001005966.1\|1925784_1925988_+	hypothetical protein	I6PDF6	Cronobacter_phage	2.7e-11	85.0
WP_000560226.1\|1926655_1926877_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
WP_000245528.1\|1926870_1927047_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	9.7e-26	93.1
WP_001452559.1\|1927121_1927397_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	3.7e-40	92.3
WP_000102217.1\|1927496_1930625_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	79.5
WP_001004417.1\|1930636_1931689_+	recombinase RecT	A0A0U2S5Y9	Escherichia_phage	2.3e-114	62.5
WP_010989194.1\|1931752_1931947_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	4.5e-32	98.4
WP_001356607.1\|1931939_1932128_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.6e-18	97.9
WP_001311878.1\|1932234_1932516_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.7e-11	41.2
WP_001189090.1\|1932481_1933558_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.9e-98	51.7
WP_000722366.1\|1933932_1934286_-	YebY family protein	NA	NA	NA	NA
WP_000979693.1\|1934302_1935178_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_001681742.1\|1935178_1935553_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|1935690_1935921_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
1940034:1940049	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2037937 : 2045171

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157299.1\|2037937_2039368_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377043.1\|2039441_2040137_-	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_000107435.1\|2040216_2040528_-	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|2041178_2042363_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_024131163.1\|2042623_2042812_-	hypothetical protein	NA	NA	NA	NA
WP_000208507.1\|2042822_2043035_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_000457648.1\|2043480_2044749_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000394197.1\|2044751_2045171_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_8

2128913 : 2139420

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126347.1\|2128913_2130227_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565909.1\|2130253_2131333_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
WP_000648783.1\|2131337_2132111_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018220.1\|2132126_2133101_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973711.1\|2133106_2133658_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000857536.1\|2133658_2134537_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.8
WP_001023656.1\|2134584_2135484_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000697846.1\|2135483_2136569_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|2136945_2137839_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111852.1\|2138016_2139420_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_9

2215320 : 2224491

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195338.1\|2215320_2217354_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_000703137.1\|2217594_2218053_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|2218224_2218755_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2218811_2219279_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598632.1\|2219325_2220045_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272839.1\|2220041_2221727_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.1e-278	90.9
WP_001240415.1\|2221949_2222681_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2222740_2222848_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2222828_2223560_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2223543_2224491_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_10

2459775 : 2465806

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000377769.1\|2459775_2460717_+	membrane protein	E7DYY8	Enterobacteria_phage	2.4e-147	88.2
WP_001682026.1\|2461959_2462349_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000703599.1\|2462317_2462572_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_000400611.1\|2462588_2464511_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.6e-300	77.2
WP_106417236.1\|2465500_2465644_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_106417237.1\|2465659_2465806_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9

DBSCAN-SWA_11

2697637 : 2774301

Salmonella_phage(33.33%)

tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000083348.1\|2697637_2698375_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219176.1\|2698504_2699839_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000188410.1\|2700856_2701444_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|2701505_2701889_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|2702207_2702897_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|2703012_2704050_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098738.1\|2704253_2704673_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.6e-16	40.6
WP_000183640.1\|2704745_2705426_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082656.1\|2705479_2708140_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2708254_2709610_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264473.1\|2709654_2709978_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807800.1\|2709974_2711276_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-42	29.9
WP_000985648.1\|2711379_2711835_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	1.9e-33	49.3
WP_001235094.1\|2717995_2720569_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_000992642.1\|2720698_2721430_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|2721426_2722407_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197667.1\|2722538_2723276_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2723547_2723886_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|2723989_2724037_+	hypothetical protein	NA	NA	NA	NA
WP_000200079.1\|2724136_2725297_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210976.1\|2725257_2726166_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|2726223_2727345_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2727354_2728425_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212373.1\|2728864_2729383_+	YfiR family protein	NA	NA	NA	NA
WP_001030993.1\|2729375_2730596_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_000065257.1\|2730752_2731100_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469802.1\|2731140_2731908_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|2731952_2732501_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|2732519_2732768_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|2733111_2734473_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|2734638_2735430_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|2735449_2736736_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001688360.1\|2736856_2737414_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|2737495_2738086_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|2738208_2739087_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880973.1\|2739172_2740834_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|2740982_2741321_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|2741486_2741777_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|2741766_2742243_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|2742392_2742875_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237656.1\|2743494_2754369_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_000533850.1\|2754432_2755842_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196137.1\|2755838_2757995_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_010989217.1\|2758026_2759190_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_010989218.1\|2759732_2760506_-	reverse transcriptase	NA	NA	NA	NA
WP_000380485.1\|2760474_2760648_-	hypothetical protein	NA	NA	NA	NA
WP_000972389.1\|2760909_2761128_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	1.9e-18	71.9
WP_001011760.1\|2761218_2762319_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|2762315_2762801_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|2762797_2765875_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|2765867_2765987_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|2766001_2766304_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|2766358_2766874_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|2766883_2768056_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905027.1\|2768198_2768765_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001221113.1\|2769448_2770564_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001111827.1\|2770644_2774301_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_12

3092098 : 3135801

Bacillus_virus(25.0%)

tRNA,protease,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001204111.1\|3092098_3092557_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000034386.1\|3092746_3093826_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000111274.1\|3093927_3095091_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_000218338.1\|3095112_3096159_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000218564.1\|3096532_3096958_+	DNA-binding protein	NA	NA	NA	NA
WP_000124001.1\|3096983_3097562_+	ECF transporter S component	NA	NA	NA	NA
WP_000553254.1\|3097562_3098270_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_001775599.1\|3098257_3098935_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000956919.1\|3098928_3099585_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
WP_000502119.1\|3099689_3100148_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000098658.1\|3100336_3102328_-	transketolase	NA	NA	NA	NA
WP_000701830.1\|3102603_3103362_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000105550.1\|3103462_3104383_-	agmatinase	NA	NA	NA	NA
WP_001278580.1\|3104610_3106587_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000729109.1\|3106595_3106727_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_077905074.1\|3106860_3107025_+	hypothetical protein	NA	NA	NA	NA
WP_001803086.1\|3107021_3107321_-	hypothetical protein	NA	NA	NA	NA
WP_001062140.1\|3107376_3108531_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001113171.1\|3109023_3110418_+	galactose/proton symporter	NA	NA	NA	NA
WP_000856775.1\|3110496_3110994_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286121.1\|3111089_3111797_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001800534.1\|3111873_3112605_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593242.1\|3112624_3113572_+	glutathione synthase	NA	NA	NA	NA
WP_023888922.1\|3113715_3114351_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_001285491.1\|3114350_3114767_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000098333.1\|3114813_3115500_-	global regulatory protein	NA	NA	NA	NA
WP_001055657.1\|3115629_3116610_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997790.1\|3116627_3117332_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001094848.1\|3117350_3117917_+	YggT family protein	NA	NA	NA	NA
WP_001277205.1\|3117913_3118204_+	YggU family protein	NA	NA	NA	NA
WP_001174773.1\|3118211_3118805_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001096530.1\|3118797_3119934_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000252198.1\|3120024_3121032_-	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_000394189.1\|3121164_3122211_-	L-asparaginase 2	NA	NA	NA	NA
WP_000502119.1\|3122529_3122988_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000984827.1\|3123110_3123830_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107559.1\|3123879_3124206_-	YggL family protein	NA	NA	NA	NA
WP_000786887.1\|3124205_3124925_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001148958.1\|3125079_3126132_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091706.1\|3126159_3126435_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000976287.1\|3126547_3127633_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_001049802.1\|3127849_3129106_+	nucleoside permease	NA	NA	NA	NA
WP_000234466.1\|3131716_3132424_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001681938.1\|3132765_3133050_+	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_071525158.1\|3133399_3133579_+	type VI secretion system protein	NA	NA	NA	NA
WP_001141622.1\|3134699_3135017_+	hypothetical protein	NA	NA	NA	NA
WP_000768134.1\|3135013_3135280_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000421096.1\|3135522_3135801_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_13

3512959 : 3550970

Salmonella_phage(76.74%)

lysis,plate,head,terminase,tail,transposase,portal,capsid,integrase

attL 3507923:3507937|attR 3520089:3520103

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3507923:3507937	attL	NA	NA	NA	NA
WP_001012560.1\|3512959_3514606_-	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
WP_001311244.1\|3514745_3514844_-	ilv operon leader peptide	NA	NA	NA	NA
WP_000290950.1\|3515469_3516522_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000900883.1\|3516710_3516902_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_001047327.1\|3516917_3517487_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_001247706.1\|3517612_3517834_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|3517866_3518376_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956176.1\|3518383_3518680_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000996717.1\|3518797_3519139_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244218.1\|3519206_3519440_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000752613.1\|3519439_3519667_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104152.1\|3519663_3520521_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
3520089:3520103	attR	NA	NA	NA	NA
WP_000017503.1\|3520517_3522932_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001580533.1\|3523083_3523272_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000822803.1\|3523339_3523639_-	hypothetical protein	NA	NA	NA	NA
WP_001251693.1\|3523747_3524626_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_001146827.1\|3525239_3526154_+	hypothetical protein	NA	NA	NA	NA
WP_000185757.1\|3526150_3526891_+	restriction endonuclease	NA	NA	NA	NA
WP_000518064.1\|3526925_3527963_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_001098422.1\|3527962_3529729_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216244.1\|3529871_3530705_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_000742518.1\|3530721_3531780_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000059191.1\|3531783_3532434_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673504.1\|3532529_3532994_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000868175.1\|3532993_3533197_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|3533200_3533416_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069905.1\|3533396_3533909_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727853.1\|3533910_3534288_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001080928.1\|3534284_3534713_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_001039939.1\|3534808_3535240_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_000829146.1\|3535232_3535679_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_000993754.1\|3535747_3536326_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000177595.1\|3536322_3536682_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000268271.1\|3536668_3537577_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_001086816.1\|3537569_3538175_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000104804.1\|3538171_3539686_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	6.8e-200	73.2
WP_000805568.1\|3539685_3540279_+\|tail	tail assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
WP_001174915.1\|3540250_3540691_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
WP_072075000.1\|3540693_3541092_-\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	1.3e-12	37.5
WP_000905027.1\|3541119_3541686_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046142.1\|3541828_3543001_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_001207656.1\|3543010_3543526_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001280897.1\|3543580_3543883_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_000763311.1\|3543897_3544017_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282796.1\|3544009_3547087_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000980381.1\|3547083_3547569_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001011760.1\|3547565_3548666_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000972391.1\|3548756_3548975_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_000502113.1\|3550556_3550970_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

4435338 : 4529794

106

Salmonella_phage(82.0%)

lysis,plate,tail,head,terminase,portal,capsid,integrase

attL 4436511:4436527|attR 4535024:4535040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000089603.1\|4435338_4436490_+\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	6.3e-49	44.8
4436511:4436527	attL	NA	NA	NA	NA
WP_000455463.1\|4436586_4437054_+	hypothetical protein	NA	NA	NA	NA
WP_000994659.1\|4437265_4438141_+	hypothetical protein	NA	NA	NA	NA
WP_001149494.1\|4438328_4438691_+	hypothetical protein	NA	NA	NA	NA
WP_000214158.1\|4438647_4439562_+	hypothetical protein	NA	NA	NA	NA
WP_001768408.1\|4439580_4440321_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_000013624.1\|4440299_4440986_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000253629.1\|4441021_4441522_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000626967.1\|4441531_4442101_+	restriction endonuclease	NA	NA	NA	NA
WP_000071290.1\|4442120_4444211_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_010989289.1\|4444207_4444966_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000252871.1\|4445202_4445457_+	hypothetical protein	NA	NA	NA	NA
WP_001251281.1\|4445456_4445696_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_000949576.1\|4445725_4446088_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000848326.1\|4446097_4446472_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_000086082.1\|4446468_4447122_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_001240640.1\|4447121_4448021_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_001165843.1\|4448010_4449489_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_000244536.1\|4449475_4449925_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_000054770.1\|4452915_4453302_+	hypothetical protein	NA	NA	NA	NA
WP_000821941.1\|4453456_4453849_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_000838927.1\|4453845_4454814_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_010989292.1\|4454828_4456259_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000213770.1\|4456591_4458097_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_000993574.1\|4458132_4458522_-	hypothetical protein	NA	NA	NA	NA
WP_000623988.1\|4458745_4458988_-	hypothetical protein	NA	NA	NA	NA
WP_001283067.1\|4459392_4460640_+	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	6.0e-61	33.1
WP_000502502.1\|4460624_4461266_+	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.1e-55	53.7
WP_010989295.1\|4461476_4462019_-	DUF1062 domain-containing protein	NA	NA	NA	NA
WP_000907593.1\|4463284_4464205_+	DNA-binding protein	NA	NA	NA	NA
WP_001020123.1\|4464928_4465231_+	hypothetical protein	NA	NA	NA	NA
WP_001103837.1\|4465326_4465707_+	hypothetical protein	NA	NA	NA	NA
WP_000018145.1\|4466077_4466287_+	hypothetical protein	NA	NA	NA	NA
WP_000979718.1\|4466304_4466757_+	hypothetical protein	NA	NA	NA	NA
WP_000968700.1\|4466753_4467050_+	hypothetical protein	NA	NA	NA	NA
WP_000115421.1\|4467127_4467586_+	hypothetical protein	NA	NA	NA	NA
WP_001097965.1\|4467674_4469624_+	DUF1738 domain-containing protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
WP_000881183.1\|4469695_4470604_+	hypothetical protein	NA	NA	NA	NA
WP_000022217.1\|4470677_4471577_+	hypothetical protein	NA	NA	NA	NA
WP_000911568.1\|4471651_4471978_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_001222413.1\|4472077_4472347_-	hypothetical protein	NA	NA	NA	NA
WP_000457555.1\|4472478_4473753_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	62.0
WP_001039750.1\|4473972_4474350_+	hypothetical protein	NA	NA	NA	NA
WP_001775272.1\|4474436_4474655_-	positive regulator of late gene transcription	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001011750.1\|4474722_4475823_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
WP_000980405.1\|4475819_4476305_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_161976233.1\|4476304_4478851_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.2e-113	42.7
WP_000763315.1\|4479077_4479197_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001280965.1\|4479211_4479514_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_001207653.1\|4479568_4480084_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046101.1\|4480093_4481266_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_000388790.1\|4481368_4481587_-	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000161708.1\|4481800_4482523_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000006337.1\|4482720_4483128_-\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000104806.1\|4483134_4484754_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
WP_001086816.1\|4484750_4485356_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000268327.1\|4485348_4486257_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
WP_000177408.1\|4486243_4486603_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000993749.1\|4486599_4487178_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000343944.1\|4487246_4487693_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_001039961.1\|4487685_4488117_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_024131238.1\|4488212_4488641_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_000731034.1\|4488637_4489015_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_001097942.1\|4489019_4489529_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
WP_000171566.1\|4489509_4489725_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
WP_000868184.1\|4489728_4489932_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673543.1\|4489931_4490396_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.1e-84	97.4
WP_000059175.1\|4490489_4491140_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000730751.1\|4491143_4492208_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000216272.1\|4492224_4493058_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_001098452.1\|4493200_4494967_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.8
WP_001681813.1\|4494966_4496010_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
WP_000080839.1\|4496058_4496754_-	hypothetical protein	NA	NA	NA	NA
WP_000789323.1\|4496773_4497838_-	hypothetical protein	NA	NA	NA	NA
WP_000829584.1\|4497834_4498899_-	hypothetical protein	NA	NA	NA	NA
WP_000835188.1\|4498908_4499127_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|4499222_4499456_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_001154437.1\|4499467_4499656_-	hypothetical protein	A0A1S6L006	Salmonella_phage	3.9e-25	95.2
WP_000301194.1\|4499823_4502238_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	94.9
WP_000104130.1\|4502228_4503089_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001090717.1\|4503085_4503670_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000785510.1\|4503666_4503894_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001244240.1\|4503893_4504127_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000963479.1\|4504194_4504536_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_000956189.1\|4504499_4504700_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	8.7e-31	95.5
WP_000460852.1\|4504707_4505217_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000102106.1\|4505249_4505492_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000052560.1\|4505608_4506241_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000027757.1\|4506244_4507270_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_000902197.1\|4507376_4507730_-	translesion error-prone DNA polymerase V autoproteolytic subunit	I6S1S3	Salmonella_phage	6.7e-10	59.3
WP_001681810.1\|4508376_4508634_+	hypothetical protein	NA	NA	NA	NA
WP_001681808.1\|4508644_4509535_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000354257.1\|4509534_4510281_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000052242.1\|4510582_4512553_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA
WP_000431675.1\|4512572_4513877_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA
WP_000467404.1\|4513899_4514595_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA
WP_001023498.1\|4514620_4515415_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA
WP_000720235.1\|4515424_4516492_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA
WP_000632616.1\|4516536_4518273_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA
WP_010989299.1\|4519049_4521545_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
WP_000127915.1\|4521568_4522615_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
WP_000466893.1\|4522617_4523895_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
WP_001210944.1\|4524139_4524679_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA
WP_001120833.1\|4525532_4527044_+	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
WP_000488995.1\|4527027_4528617_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000449622.1\|4528780_4529794_+\|integrase	site-specific integrase	NA	NA	NA	NA
4535024:4535040	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4681891 : 4694545

Enterobacteria_phage(50.0%)

integrase

attL 4672426:4672439|attR 4685557:4685570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4672426:4672439	attL	NA	NA	NA	NA
WP_000152561.1\|4681891_4683382_-	alcohol dehydrogenase catalytic domain-containing protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.0e-11	36.1
WP_000772672.1\|4683852_4685118_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
WP_000573583.1\|4685180_4686257_-	serine/threonine protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
4685557:4685570	attR	NA	NA	NA	NA
WP_000700163.1\|4686253_4687312_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	4.9e-56	44.7
WP_000493739.1\|4687301_4688465_-	hypothetical protein	NA	NA	NA	NA
WP_000214423.1\|4688740_4689307_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
WP_000468230.1\|4689322_4689562_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
WP_001779443.1\|4689565_4690309_-	hypothetical protein	NA	NA	NA	NA
WP_071525138.1\|4690591_4690777_-	hypothetical protein	NA	NA	NA	NA
WP_015701354.1\|4691104_4691656_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	70.4
WP_001216603.1\|4691652_4691880_+	hypothetical protein	NA	NA	NA	NA
WP_000795388.1\|4691876_4692197_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783716.1\|4692211_4694545_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	86.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_003198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection