Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_004605 Vibrio parahaemolyticus RIMD 2210633 chromosome 2, complete sequence 2 crisprs DEDDh,WYL,csa3,cas3,cas5f,cas7f,cas6f 0 1 0 0
NC_004603 Vibrio parahaemolyticus RIMD 2210633 chromosome 1, complete sequence 0 crisprs cas3,DinG,csa3,csx1,DEDDh 0 0 3 0

Results visualization

1. NC_004605
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004605_1 68741-68838 Orphan NA
1 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004605_2 1461551-1461697 Unclear NA
2 spacers
cas6f,cas7f,cas5f

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NZ_CP017904 Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence 201007-201038 3 0.906
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NZ_CP017901 Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence 206663-206694 3 0.906
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NZ_CP017909 Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence 203227-203258 3 0.906
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NZ_CP017893 Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence 184601-184632 3 0.906
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NZ_CP017898 Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence 206028-206059 3 0.906
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 NC_023007 Bacillus phage vB_BanS-Tsamsa, complete genome 126510-126541 7 0.781
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 KT070867 Bacillus phage PBC2, complete genome 65851-65882 7 0.781
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 AP014358 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C94, *** SEQUENCING IN PROGRESS *** 7471-7502 8 0.75
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 MN693953 Marine virus AFVG_250M577, complete genome 29125-29156 9 0.719
NC_004605_2 2.1|1461579|32|NC_004605|CRISPRCasFinder 1461579-1461610 32 MN693129 Marine virus AFVG_25M62, complete genome 17784-17815 9 0.719

1. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 3, identity: 0.906

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .*********.********************

2. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 3, identity: 0.906

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .*********.********************

3. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 3, identity: 0.906

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .*********.********************

4. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 3, identity: 0.906

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .*********.********************

5. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 3, identity: 0.906

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .*********.********************

6. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 7, identity: 0.781

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
gaattatcacaagctaaagcagatgctactaa	Protospacer
**. **.******** ************ .*.

7. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 7, identity: 0.781

-gagataccacaagctcaagcagatgctaacag	CRISPR spacer
attgatg-cacaagcagaagcagatgctaaccg	Protospacer
   ***. *******  ************** *

8. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to AP014358 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C94, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
ctagtaacactagctcaagcagatgctaatac	Protospacer
  ..** *** ******************.* 

9. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to MN693953 (Marine virus AFVG_250M577, complete genome) position: , mismatch: 9, identity: 0.719

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
aaaataacaaaagctcaagcagatgctgttgc	Protospacer
.*.*** ** *****************. .. 

10. spacer 2.1|1461579|32|NC_004605|CRISPRCasFinder matches to MN693129 (Marine virus AFVG_25M62, complete genome) position: , mismatch: 9, identity: 0.719

gagataccacaagctcaagcagatgctaacag	CRISPR spacer
aaacaaccacaaactcaagcagaggctaaacc	Protospacer
.*.  *******.********** *****   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_004603
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 709221 : 715923 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 1656853 : 1667480 13 Vibrio_phage(91.67%) NA NA
DBSCAN-SWA_3 2689992 : 2707408 14 uncultured_Mediterranean_phage(20.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage