CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number
NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	0 crisprs	csa3	0
NC_008541	Arthrobacter sp. FB24, complete genome	4 crisprs	csa3,cas3,DinG,WYL,DEDDh	1
NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	0 crisprs	csa3	0
NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	0 crisprs	csa3,PD-DExK	0

Cas Category Instructions

Results visualization

1. NC_008541

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CRISPR-Cas detection and classification

Crispr_ID: NC_008541_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008541_1

135282-135356

Orphan

Consensus_repeat	Method
GGCCAGCAGCCCGGGCCGTACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008541_1

>merge|NC_008541|1|135282-135356|CRISPRCasFinder
GGCCAGCAGCCCGGGCCGTACGGCCAGCCGGGGTATGGCCAACCGGAATACGGCCAGCAGCCCGGGCCGTATGGC

>NC_008541|1|1|135282-135356|CRISPRCasFinder
GGCCAGCAGCCCGGGCCGTACGGC	CAGCCGGGGTATGGCCAACCGGAATAC
GGCCAGCAGCCCGGGCCGTATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008541.1\|WP_011690000.1\|130955_131561_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NC_008541.1\|WP_043429211.1\|129393_130749_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|132655
NC_008541.1\|WP_011690010.1\|141219_142314_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|224513
NC_008541.1\|WP_011689998.1\|128797_129334_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011689996.1\|127145_127637_-\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011690003.1\|134243_135059_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NC_008541.1\|WP_011690008.1\|139488_139815_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_008541.1\|WP_011690013.1\|144714_145314_-\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011690007.1\|138632_139376_-\|peptidase-E	unknown	unknown	gnl\|CDD\|153240
NC_008541.1\|WP_011690001.1\|131797_132340_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379265
NC_008541.1\|WP_011690009.1\|139897_140881_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NC_008541.1\|WP_043429215.1\|140973_141183_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011690006.1\|137227_138640_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_008541.1\|WP_011689997.1\|127851_128748_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NC_008541.1\|WP_011690012.1\|143807_144671_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NC_008541.1\|WP_011690002.1\|132329_133979_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050
NC_008541.1\|WP_011690005.1\|135686_137156_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NC_008541.1\|WP_011689994.1\|125279_126404_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NC_008541.1\|WP_011690011.1\|142403_143684_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_008541.1\|WP_011689995.1\|126425_127088_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008541.1\|WP_011690000.1\|130955_131561_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	3.46443e-93
NC_008541.1\|WP_043429211.1\|129393_130749_-\|nitrate-reductase	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	1.58009e-112
NC_008541.1\|WP_011690010.1\|141219_142314_-\|diacylglycerol-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.38284e-43
NC_008541.1\|WP_011689997.1\|127851_128748_+\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.63541e-144
NC_008541.1\|WP_011690008.1\|139488_139815_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.18388e-27
NC_008541.1\|WP_011690003.1\|134243_135059_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	2.59076e-18
NC_008541.1\|WP_011690007.1\|138632_139376_-\|peptidase-E	gnl\|CDD\|153240	cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.	4.52326e-61
NC_008541.1\|WP_011690001.1\|131797_132340_+\|hypothetical-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	0.0063351
NC_008541.1\|WP_011690009.1\|139897_140881_+\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.02365e-102
NC_008541.1\|WP_011690006.1\|137227_138640_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	6.57822e-112
NC_008541.1\|WP_011690012.1\|143807_144671_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.28945e-56
NC_008541.1\|WP_011690002.1\|132329_133979_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NC_008541.1\|WP_011690005.1\|135686_137156_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	4.13424e-141
NC_008541.1\|WP_011689994.1\|125279_126404_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	6.32031e-151
NC_008541.1\|WP_011690011.1\|142403_143684_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0

>NC_008541.1|WP_011690003.1|134243_135059_+|NERD-domain-containing-protein
MAAGEGASEQSRLAAERIARLKRQLDHAERAAETWGAGAEGERRTAGRLGRLTPDGWFMLHDVHWPGRPLANLDHVLVGPGGVVVVDAKNWSGTVEVRDGILRQNGYSRNPAVEGALGQAAAVAALLGAPHRRLVRSIICLTGHPDFAEVTESGIEVLGINRVVARIAALPAVLDPQTVVGLYSHLGQQLTQPQAPAVPDVRGNAARHPAPRPYQRGAYPSPVPARVGYRSAASPPQLGNQASAGKLAAFLWSLLVLGIVAFSLSAPLWSR
>NC_008541.1|WP_011690002.1|132329_133979_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MASRAGTVAQPQDLVDLTALLDAYYDVSPDLSDPGQRVAFGTSGHRGSSLKASFNEPHIVAITQAIVEYRAGQGITGPLYMAKDTHALSEPAQNSALEVLAANGVNVLIDARHGYTPTPSLSHAILTHNRNAPAGAPQADGIVVTPSHNPPGDGGFKYNPPHGGPADTDATGWIANRANELLENGLRGVKRIPVADALAAETTGKFDFLSSYVDDLPSVLDLNAIREAGVRIGADPMGGASVDYWGEIGERHHLNLTVVNPTVDPQWAFMTLDWDEKIRMDCSSPSAMASLINRMSSGANFDVATGNDADADRHGIVTPDGGLMNPNHYLAVAIDYLYRHRTGWNPQSVIGKTLVSSSIIDRVAESLGRKLVEVPVGFKWFVPGLLSGEGAFGGEESAGASFNKMDGSVWTTDKDGILLALLASEITAVTGKSPSQLYKGLTDQFGDPVYARIDAAATREQKAALGKLSPSDVTATELAGETITAKLTEAPGNGASIGGLKVVTENAWFAARPSGTEDVYKIYAESFKGADHLKQVQAEAKALVDGVIS
>NC_008541.1|WP_011690001.1|131797_132340_+|hypothetical-protein
MRNLILVAFTEPVSDGLVFPRDDWPLHITLVRFDVEMKSGDAGTGGEVGNGGGGGHVAGLDDRIAGLIDEPVRAALGSRLTIGEDAGFGRQESVPVSLVEPSRPLQDLHESLVGTVMGLPGRVPTPHHILENYRPHVSHHGDKRPRPGDVVVLDRVALVDMAPDGNHSVRRILHLWELTK
>NC_008541.1|WP_011690000.1|130955_131561_+|malonic-semialdehyde-reductase
MTIAHEEAVIDAAAVDAIFAEARTANTFTGEVTDEQARAIYELTKFGPTAFNSQPLRVTYVRSDEARAQLVAALSSGNRAKTASAPLVAVLSYDTAWQDQWDNFLPGYNAPKAMYDAAPELAAITGNNNAHLQAGYFILAVRSLGFAAGPMTGADFSAIDAAFFPAGDQKSFLVVNIGQPGPDAWGAAKPKFAYEDVVRTV
>NC_008541.1|WP_043429211.1|129393_130749_-|nitrate-reductase
MSMLGTKWKLHGNGKSVRPGEVVAPGERLTWPLTIGVGMQHVVAMFGATFLVPIITGMPPATTLFFSGIGTLLFLVITQGRVPSYLGSSFAFIAPIMASQQQFGIPGALGGVVLAGAGLAVIGAVVQKFGAGWINRLMPPIVTGAIVALIGLNLAPAAKNNFDAAPVTAAITLATIILVSVLFKGILGRLSILVGVVVGYLVAMIRGEVDYAKMDAAAWVGLPHFQTPEFHLGVVGLFVPVVLVLVAENIGHVKSVSAMTGQNLDGVSGRALMADGAATVLAGFGGGSGTTTYAENIGVMAATKVYSTAAYWVAGIFAIVLSFSPKFGELIATVPPGVLGGAATMLYGMIGILGVKIWVQNKVNFSNPVNLTTAAVALIIGIANYTWTIGELTFTGIALGSAAALVIYHGMKAIAKARGSVAEPETEQAGLPPAVKAAINAAAKRTPKKRP
>NC_008541.1|WP_011689998.1|128797_129334_+|hypothetical-protein
MTQENQGTPIEEEGGYGTPTVEQEMGGADTKKFAQPREEEAFDAAGLSQDSPDGETYPAGVPDLSQFGAEDQDSAGEPGAGRFGGTEDQMNAENESADPGFEPENTEPENTGQSAEGDVAVPSADAEMDESNTEDPDAGRPFSSEPNPDAAGIPDGSGTDLPDSKAPKDRGDDSFDAG
>NC_008541.1|WP_011689997.1|127851_128748_+|SDR-family-oxidoreductase
MTDNKKDHQPRDPRTGYHEGPFPEQVQEQPGLTAPMEPQPDHGEESYEGSSALTGKAALITGGDSGIGRAVAIAFAREGADVAISYLPEEEADAQDTAAWIRKAGQRALLLPGDGRSEEFSTRIVADTLAEFGRLDVVVLNAAYQKNRDSFETLPTEEFDRVFKTNLYSLLWTARAAVPHLKAGASIITTASIQAFNPSPGLIDYAMTKGAQVAFTKALAQELGPKGIRVNAVAPGPIWTPLIPATEWPEKLPKFGQDTPLGRAGQPAELAAAYVLLASDHGSYISGAVLPVTGGKGL
>NC_008541.1|WP_011689996.1|127145_127637_-|hypothetical-protein
MSEGDAVVGDGRNESVNQQMDRNWGELIQELRVLQTGVQILAGFLLTIPFQERFKTLDDYQVGLYLANVILAALTTAVILLPVSVHRRLFRKQLKKTLVSSADRIAKVALTGVALLSAGTASLVFDVTAGRDAGLLAGGGLLAAMVLLLVLVPNWLLKRASKV
>NC_008541.1|WP_011689995.1|126425_127088_-|hypothetical-protein
MKKWVKEHGLMLANIGLFALFFSGMIVSGASDYSEDQLAHGQPAVGIAGYLATGAFLEATFENWESEFLQMGMYVILTVFLFQKGSSESKPMDRTAPQDQDPRNATVKASTPWPVRRGGVVLKLYEHSLSIMFLLLFLASFTLHAVGGSEEYSQEQQSHGQPGVTLLGYLATSRFWFESFQNWQSEFLAVAVLVGASVYLRERGSPESKPVAEPHYETGA
>NC_008541.1|WP_011689994.1|125279_126404_+|glycerate-kinase
MRILIAPDKFKGSLTAAEAASAIAEGALRVYPDAVATQFPVADGGEGTLEAAVAAGYEERLNAVVGPILAPIGAAWALRKDAFGGATAVIETAQASGLAHMEPTPANALRAHSYGCGQLIAAALDAGASEIVLGVGGSAMTDGGSGALRALGLKPLDAAGNVVPLGGGSLVDVVDVDVSGLDPRLGSVKFRIAVDVQNPLFGSDGAAHVFGPQKGADADAVELLDAGLRNWGSVLRQATGRDVNVPGAGAAGGFPASFLAFSGATLEGGFALVAGLTGLAGQLAEADLVITGEGSMDSQSLTGKAPIALADAARERGIPVIVVAGRILVTPEDLAEHGVVAAAQLLDVATSPEDAIANAAKYLTWATSQVLEGA
>NC_008541.1|WP_011690005.1|135686_137156_-|peptide-MFS-transporter
MSTTHLSDRPATTPGDTSFFGHPKMLASLFSVEMWERFSFYGMQGILLYYMYFTAAQGGLEIEQGLAAGLVGAYGGGVYLSTILGAWLADRLFGSERVLFGSAVLIMAGHIALALVPGIPGLIAGLVLVGVGSGGLKANATALVGTLYGEKDERRDAGFSIFYMGINAGALIGPLVTGWLQESRGFHWGFGAAAVGMALGLGIYAMGRGKLPEAAHHVPNPLPAAQRTRYGLIFLGIAAVVAVLLATGAVNAENLAMSMAYAAIGASVLYFGLIFSSRKVTGVERKRVVAFIPLYIASAAFWALFQQQFTFIAVYSEEKLDRNLFGWEMPAAWVQSINPVFIIIFAGVMAALWTRMGNKQPGSALKFSIGLFVMGLAFLAFIPLAGSGKTPLLALVGILFLFTLAELFLSPIGLSVTTKLAPQAFHTQMVALFFLSVSLGTTLAGILSGLYNPDDELPYFTGIGGTAMVLAVGLAAASPAIKKLMAGVR
>NC_008541.1|WP_011690006.1|137227_138640_-|amidase
MADIHELSAVGLRDALHSGGLSAREVTEHFLARIEALNPGLGAFITVTGEQALADAADADARYARSAGQLPLLHGMPVAFKDLTDVAGVVTTHGSAALEHKPASVDGALAAVLRGAGAISLGKTQVPEFGLTAYSENLIAPPSRNPHALSRSSGGSSGGSAAAVAAGLVPFAPGSDGGGSVRIPAAACGLVGLKPGRGLVPAGESTGDPARLVVAGPLARSAGDAALMLDALVAEPEADGYLASVSRPPGPLRIGVSLDSPWQAIFPFTPAAEAMDALNEGVRLLEAAGHSTAEAAVRYDNRYPDAFTTAWTAGVGSARIAPQREALLTPLTRTFRRRAQQRSASKLNEALGFLRQFERDTVAQYAQWDLMLMPALAQTPRPVGWFTGASHGDGYWPASEWAGDADGDYRKQCEYAPWSSMVNVCGLPAISIPVHWTGGLPGAGLPMGIQLVGPAGSEKVLLQVAAQIGF
>NC_008541.1|WP_011690007.1|138632_139376_-|peptidase-E
MAAQQPTILATSGGYKAGRRSRLEFDALLHHAVELSGVTGRAPRVTHIGTAAGDQRSFNAELDQAAKIAGFDFSHLNLFTMPSIDDPEAHLLEQDVVWVNGGSVVNLLAVWRAHGLDGILRRVWEAGVVLAGVSAGSICWFQGGTTDSYGPQLRPVTNALGFLPYANGVHYDSEVQRRPLVHRLVADGTLGETHCTDDGAGLVYFGTHLAEAVTEVRGKAAYRVTRHIQGGGAATAAEERLEARFLG
>NC_008541.1|WP_011690008.1|139488_139815_+|rhodanese-like-domain-containing-protein
MSDFETVTVTDVPADARILDVREDYEWSAGHAEGALHIPLDQLPARLGELDPDEDVYVICRTGGRSFRAAKWLVGQGYSAFNVAGGMDQWLESGLPLVSDNGLKPVIL
>NC_008541.1|WP_011690009.1|139897_140881_+|prephenate-dehydratase
MPAQPVTYTFLGPEGTFTEAALMQVPGAGEAVRIPSSNVNTALDKVREGSADAAMVPIENSVEGGVTATLDAIASGAELRIVREALVPISFVLVSRPGVEIEDIRRISTHGHAWAQCRLWVEANMPDVEYIPASSTAAGAMGLLDEGGAHYDAAICAPIVATEQPGLHVLAENIGDNPGAVTRFVLVSRPGALPHRTGADKTTVVVPLPEDRPGALMEILDQFATRGVNLSRIESRPTGQYLGHYFFSIDADGHVEDARVADALAGLHRISPATRFLGSYPRADAQSPDVAQHTSDEAFQAAHEWVAGILKGASIEPVHAPQGSPTA
>NC_008541.1|WP_043429215.1|140973_141183_+|hypothetical-protein
MSGSSSDNDGQGMIVNPKPTADNQDWDGDDADRADRLRFEEEQAMIREQSEARAAAKAAAEAEEKKASA
>NC_008541.1|WP_011690010.1|141219_142314_-|diacylglycerol-kinase
MNDWLLYLILAAALAFAVSSWWGVRRLKALHTRSAVQEDTHHPGMAQQKVAVVMNPVKAKSSEARALIQRACLSAGWEAPLFFDTTAEDPGYAQAEAAVASGADVVLVGGGDGTVRVVAEKLARTNVPMGLVPLGTGNLLARNIHLDVNDLHGSIQTALFGHQRHIDTARMGIRNSRTGASSEHAFLVIAGMGMDAEVVGDTNDGLKKAVGWLAYTEAGVRHLPGRRKKVSIALDDQPEQSRKIRSVLFANCGLIPGGIDFIPQAMIDDGMLDVVVMSPRSAIGWIAMYTKVMFKHKGNLPVMSYYRSGKIVIKCAEPVATQVDGDPCGEATDVTVQVEPRSLLVRVPERKGGETPAREASAPH
>NC_008541.1|WP_011690011.1|142403_143684_+|serine--tRNA-ligase
MIDVKDLSENPDKFRASQRARGADESVVDAIISADAARRAALIRFENLRAEQNAFGKKVAQAKGEEKQALLAEVKVLAASVKAASAEADVAQAQQEELLRAIPNLIVDGVPEGGEDDYIVVKTVGEPREFPDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIDAGFIPMITPTLVRPETMQGTGFDVKHDAEIYRLAEDDLYLVGTSEVALAGYHADEILDLSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHERLLAWEEEMLAKCELPYRVIDTAAGDLGNSAARKFDCEAWVPTQGAYRELTSTSNCTTFQARRLNIRERVLNEDGAPKGTRAVATLNGTLATTRWIVAILEHHQNEDGSVNVPRALQKYLGGLEVLPVL
>NC_008541.1|WP_011690012.1|143807_144671_+|Cof-type-HAD-IIB-family-hydrolase
MTTLTETSVAGNDDQRNNGKNDPAQKLMVALDVDGTLVNHDGHMSAPVRDAAQAVVAAGHEVLIATGRSLNATLPIIEQIGIDTGYAVCCNGGVTLRLDPAHPDGYEVIRKATFDPGPALRALRKRLPLAKYALEDEHGNFLSTERFQDASFGVEAIGVDFQTMLDATAVRVVVFSSENTSEEFNEAIKHIGLSGVTYSVGWTAWLDIAAEGVTKASALEHLRGHLSIESHLTVAIGDGRNDIEMLTWAGRGVAMGQAPDEVLAAADEVTMSVHDDGAAHVLRSLLS
>NC_008541.1|WP_011690013.1|144714_145314_-|hypothetical-protein
MFTLTINQTDSRRDGDRVPQLLKDLRHIPARLDFDRSVEDEVQGIVEFPQQAVEAALIALRCGSWFVGIGVGPVNEPLPNQIKDATGHGLIYARRAVDRLRNGKERVPVAVDGPFADLAAEAEAVLKLLGHIVHDRSAAEWRVLDLLTPGVRGQQKAVAHELGITTQAVSKAVARAQWNEEHAARPAAARLLQLILEVR

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Crispr_ID: NC_008541_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008541_2

1576907-1577004

Orphan

Consensus_repeat	Method
CGTCCCGGCAACAACCCGTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008541_2

>merge|NC_008541|2|1576907-1577004|CRISPRCasFinder
CGTCCCGGCAACAACCCGTTCGCCACGTCCCAGGGCATGCCCCGGGGCCGCGGCGGCGACAACGAGCGTCCGCCGCGTCCGGGCAACAACCCGTTCGC

>NC_008541|2|2|1576907-1577004|CRISPRCasFinder
CGTCCCGGCAACAACCCGTTCGC	CACGTCCCAGGGCATGCCCCGGGGCCGCGGCGGCGACAACGAGCGTCCGCCG
CGTCCGGGCAACAACCCGTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008541.1\|WP_011691279.1\|1580190_1581303_-\|ScyD/ScyE-family-protein	unknown	unknown	gnl\|CDD\|380207
NC_008541.1\|WP_011691271.1\|1570945_1571941_-\|aminoglycoside-resistance-protein	unknown	unknown	gnl\|CDD\|309685
NC_008541.1\|WP_156810637.1\|1585873_1586329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130543
NC_008541.1\|WP_043429599.1\|1575920_1576262_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NC_008541.1\|WP_011691280.1\|1581487_1581973_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NC_008541.1\|WP_011691278.1\|1579615_1580125_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_008541.1\|WP_043429601.1\|1582106_1582544_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_008541.1\|WP_011691282.1\|1582615_1582954_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011691267.1\|1565580_1566330_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011691268.1\|1566799_1568611_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_008541.1\|WP_011691283.1\|1582985_1583195_-\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_043429604.1\|1583288_1584452_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|223513
NC_008541.1\|WP_011691285.1\|1584579_1585500_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_008541.1\|WP_011691286.1\|1585501_1585855_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011691274.1\|1574106_1574724_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_008541.1\|WP_011691272.1\|1571984_1572716_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NC_008541.1\|WP_052309656.1\|1572795_1574001_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NC_008541.1\|WP_011691270.1\|1569489_1570914_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223154
NC_008541.1\|WP_011691269.1\|1568628_1569423_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_008541.1\|WP_011691275.1\|1574723_1575704_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061

Protein	Function_ID	Function_description	E-value
NC_008541.1\|WP_011691279.1\|1580190_1581303_-\|ScyD/ScyE-family-protein	gnl\|CDD\|380207	NF033206, ScyE_fam, ScyD/ScyE family protein. This family includes ScyE, a protein involved in scytomenin biosynthesis and export, and its paralog ScyD. Some members of the family contain a C-terminal PEP-CTERM domain that predictions anchoring to the outer membrane.	4.65608e-74
NC_008541.1\|WP_011691271.1\|1570945_1571941_-\|aminoglycoside-resistance-protein	gnl\|CDD\|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	3.20758e-24
NC_008541.1\|WP_156810637.1\|1585873_1586329_+\|hypothetical-protein	gnl\|CDD\|130543	TIGR01478, Plasmodium_falciparum, variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.	0.00010961
NC_008541.1\|WP_043429599.1\|1575920_1576262_+\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.26742e-24
NC_008541.1\|WP_011691280.1\|1581487_1581973_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	2.1372e-37
NC_008541.1\|WP_011691278.1\|1579615_1580125_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.31113e-46
NC_008541.1\|WP_043429601.1\|1582106_1582544_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.7938e-35
NC_008541.1\|WP_011691285.1\|1584579_1585500_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	7.2991e-170
NC_008541.1\|WP_011691268.1\|1566799_1568611_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_008541.1\|WP_043429604.1\|1583288_1584452_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|223513	COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism].	3.35538e-115
NC_008541.1\|WP_011691274.1\|1574106_1574724_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	6.41491e-36
NC_008541.1\|WP_011691272.1\|1571984_1572716_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	1.34531e-97
NC_008541.1\|WP_052309656.1\|1572795_1574001_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	5.28747e-21
NC_008541.1\|WP_011691270.1\|1569489_1570914_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223154	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].	1.53477e-67
NC_008541.1\|WP_011691269.1\|1568628_1569423_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	4.62649e-42
NC_008541.1\|WP_011691275.1\|1574723_1575704_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0

>NC_008541.1|WP_043429599.1|1575920_1576262_+|YlxR-family-protein
MALVQHLEDQPQRTCIGCRKKGPRSELLRLVAERNGSPVVVVDERRRMAGRGAWLHPSETCLALAIKRRAFGRALPGTTGTAAVERRITAGTQAVDTPVAAATTVQPESGSEN
>NC_008541.1|WP_011691275.1|1574723_1575704_+|transcription-termination/antitermination-protein-NusA
MDIDMSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWATEIDDDGAPIGEFEDTPAGFGRIAASTARQIILQRLRDAEDDNVLGQFKGREGELVAGTIQQGNNPHMIQVNLGTVEALLPPPEQVPGEKYIHGNRLRAFVIDVHRGTKGPSITLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANIPGINAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASALSPSRVNSVTITDEATRSARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAVSREN
>NC_008541.1|WP_011691274.1|1574106_1574724_+|ribosome-maturation-factor-RimP
MSNAEATTSSDRTGTGKAEAESVHNPEAERVRALLEPSVQAHRLYLEDVSIHVAGANRVVHVVVDLPQEETGGVSLDVIAEISKELSGILDGDPSYDSRPYDLEVSSPGVGRPLTEPRHWHRARGRMVKVNVIQGENLTGRIQSVDDDGVTLVPEIAAKKGMKPKQGEPEKIPFDRIRNGKVEIEFSHLDEVGLEDENNGPSEEA
>NC_008541.1|WP_052309656.1|1572795_1574001_-|ferritin-like-domain-containing-protein
MKDDTKEKRRPGRYFRYGILASLALLVISLGLALTPGQPPEAPEPSFSERARASALAETMHLRTAGSLLADSVSGAERQALLRTVTLLTTQARALSGPDQKPPPAATAAASGTASGEPSASAPVNGEPVVADSPAGLVAAVSASGTRRLKDAEASDGGMARLLAAVGTAQLIQASSLAPAVGATAPELPVLPAPSPAPAAAAAASPSAASLPAASPAAGESSCPPAPAASGPAAGSATTATALAMTVKTEAETVYGYQVALARLDGAAAGSASQLLARHESVLAEAEALSRAQCVDIPPREAGYTLGPLFLESPAAGLGSLEAGTLPVYGDLVALSDGGIRQWAIAGLLAAANRAAQWGADSGPLPGIVVDTAQLPELATDSPAPESTAPGASPPPSDAGQ
>NC_008541.1|WP_011691272.1|1571984_1572716_-|VIT-family-protein
MDSARVATQHENEPHHNDIAHRLNWLRAGVLGANDGIVSVAAIVVGVAGVTTDSGPILIAGTAGVVGGAISMALGEYVSVSSQKDSQQALIDKEKRELAEQPEEELEELTAIYQGKGLSPATARTVAKELTAHDALAAHLSAELHIDETDIVSPWHAAFASAIAFLVGAILPMLAILLPPENIRVPLTFAAVLVALAATGALGAWIGGGSKMKAAVRVVVGGALALIATFAIGTLLGASGVVA
>NC_008541.1|WP_011691271.1|1570945_1571941_-|aminoglycoside-resistance-protein
MKPPADVPIPPDLSRRYSRTSGGRAWLGSLQGLICGRLERWDLEVDLEPGQLPWNGHGGVVVPVTRKGVPAALKVAYPHDEARVERFALRLWDGQGAVRLLESDAGTCSMLLERLDAGCCLQQVPMETAVEVWGGLTRQLSLIPDQRPEWQEFHHVAARAEQWSDDLPADWEQLGRPFPRWLLEAALEVCQTRGAVGRRGGTDVLVNTDFHYLNILARPEGGFAAIDPQPMIGEAEFSVAPLLWNRIRDLPRSNPGRGLLDRCREFSAAAGLDAEVARQWSLAREVENALWYASRPLHDGDLARSLWVASTLAGRTLGGLPAAHDLPAPGK
>NC_008541.1|WP_011691270.1|1569489_1570914_+|aspartate-aminotransferase-family-protein
MSTGDEPFRAALGAAARHANEWLESQPTRHVGPRATAGELEADFGGPMPETGLPAGDVIDYLAAKAEPGLMAMPSGRFFGWVIGGTLPAAMAADWLVSAWDQNSFLRAATPAAAVIEAAAGSWFLDLLGLPETADVGFVTGATMANFAGLSAARWRVLEKAGWDVNAAGLAGAPAVSCLVGQERHDSIDLALRYLGMGHPVAVPSDRQGRIDPAELDCALDRALVKASGGAGGSAPAPPIVCLQAGNLHSGAFDPFLEAVTVAKAHGAWVHVDGAFGLWAAAVPELAALTAGLHLADSWATDAHKTLNVPYDCGIVAVRDTEALEAALSVNPSYMIRDAGSAPDPFQTVPELSRRARGVPVWAALKSLGRNGVAEQVRNLVSRASQLARQLSALDGVEVLNDVAYTQVSLAFGDDATTRAVTARIIEDGLVWMSGSRWQGRDVLRISVSNWTTDDADVEAAVDAVRKALAAVRS
>NC_008541.1|WP_011691269.1|1568628_1569423_+|TSUP-family-transporter
MISGFESLEPATLILIIVAGFAAGWIDAVVGGGGLIQLPALLLVPGISPVQALATNKMGSIFGTTTSAVTYYRRVRPDLRTAIPMAVIALAGSFGGAVLAATLPASVFKPIIVAALVAVALFTAFKPNVGDLTSLRHDGRTHYVVACLIGAAIGFYDGLIGPGTGSFLIIALVSAMGYAFLEASAKAKIVNMATNAGALIFFLPHGSLMWGVGLVLGLANMAGGYLGARTAVKQGSTFIRNVFLAVVGALILKLGYDIWQDTFA
>NC_008541.1|WP_011691268.1|1566799_1568611_+|proline--tRNA-ligase
MVLRLSKLFLRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEKVIREEMAAIGAQEVHFPALLPKEPYEATNRWTEYGEGIFRLKDRKGGDYLLAPTHEEMFTLLVKDLYSSYKDLPLSIYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYNAHRAAYLKIFERLGLEVIPVAATAGAMGGSRSEEFLHPTEIGEDTFVRSAGGYAANVEAVTTVVPAEIDFSNAPAAEIRDTPNTPTIDTLVDAANQLVPRDENDGGAWTAADTLKNVVLAVTLPTGERQIVVIGVPGDRGVDLKRVEANIGAYLPVAGEITVEAAGEEDLARNPLIVRGYLGPGMSLGTPLLGLEGAAKLLYLVDPRVVKGTAWVTGANMAGKHVFGLVAGRDFGWDGVIECTEVRAGDEAPDGSGPLETARGIEMGHIFQLGRKYAEALELKVLDQNGKQVVVTMGSYGVGVTRAVAALAESNHDAKGLVWPRAVAPADVHVVAVGRGEEIFAAAEQLSLELEAAGLEVIYDDRPKVSPGVKFGDAELIGVPTILAVGRGLVDGVVEIKDRRSGEAENVAVEKAVDYVVNAVRSK
>NC_008541.1|WP_011691267.1|1565580_1566330_+|hypothetical-protein
MNTSVVRFFGASALLVLGLSACGGPAAPVDAGASPETSAASVTPSPTPPEAAFTMLTSDELAEIAGSVKDSASAPLSVLPADKVSQALDQMMSLMTDVQVEPAECNSIATGAAIKPDSNTTMAVGASTSSTAELTQTLSLLSGVAKEQLDQTLARRSSEIKDCSSISMNIQGMSMTAETTRLDSSAATPGAIAMQTDVTLPTGATQRTVMSFAVKGGVLISAQASGTGVTSSDLTSAEALLDQAATLID
>NC_008541.1|WP_011691278.1|1579615_1580125_+|30S-ribosome-binding-factor-RbfA
MADPARAAKLAQRIKVVVAEALGRKVKDPRLEGITVTDARVTNDLQHATIYYTVFGDQVVQADAAKGLEKAKGVLRQEVGRNITVRLTPTLEFVADQIPVNASNLEELLRAAKKRDAEVAALAAGAKHAGDADPYKSDIPEDVEIDEDDFDEEDEDLIDDEELDEDGNK
>NC_008541.1|WP_011691279.1|1580190_1581303_-|ScyD/ScyE-family-protein
MRKHVPLAAAAISAAVFLATGSAGVAAPPRTEPVTLADGLVGPLHVSAGRDGTAIVSEEFASRLTRVASDGTKTVLYSDPEWDVAGSVQRRSTTYFVESQGAGPMDPRPLAGHVRTIAADGTQRTFGDLAALENEKNADGDVRYGFEDLPDACAAQIPPEVPVSYTGTVDSHPYGIALSGDTVYVADAGANSIVAVDADSGDAETVAVLPPRPFEITAEAAATLKLPDCVVGLTYIFEPVPTDVAVGPDGWLYVSVLPGGPEDPALGARGAVYRVNPDNGRVRLFADEVMSPTGLAVDDDGDLYVASLFGEGVLRIDGNDRQRTVLAGKLTADVALRGSTLYATTDALPAENQPPNGKLVTVYRDRHSRR
>NC_008541.1|WP_011691280.1|1581487_1581973_+|nucleoside-deaminase
MDAPPSAADIQKFLGQAVDLAVQNVAAGGGPFGALVVTADGTRHFGVNRVTRDNDPTAHAEVVAIRTAAAESANFDLSGAVLYASCEPCPLCLAAALWARIDRVYFAADRHGAAAAGFDDALFYEYFEGVRPELMPVNQTDVPTSNAPFEAWDANPDRTEY
>NC_008541.1|WP_043429601.1|1582106_1582544_+|thioredoxin
MEPRLIRCPGCGKTNRIPAAAPGRPRCGNCSHDLPWIVDAGDLDFKHIAEESTVPALIDFWAEWCGPCRLVSPVLDQLATEKAGRIKLVKVDVDHAPGLSARFAVQAIPTLMVIVGGIVIARQAGAAPAATLRTWLEHALSSTLS
>NC_008541.1|WP_011691282.1|1582615_1582954_+|hypothetical-protein
MTEILRYEVGSGVVLVEAEESSFGVEHPSRDEQGIQDTGRRLEDALASVRPAAKAAAEVLGDLAPEHLEIQFGVKLAGAAGAIIARNVTEAHFIVKMSWSPEQEPLEEEIVP
>NC_008541.1|WP_011691283.1|1582985_1583195_-|hypothetical-protein
MWWQDLLWGFWNGFTAWIVLIAHVFGAWAEFPFYNNARAGNWYDFGFLLGMGSPLLGGLGVRGGRRSRR
>NC_008541.1|WP_043429604.1|1583288_1584452_-|pyridoxal-phosphate-dependent-aminotransferase
MADMPELAAHIHDFPVNQIREITEAAWGTPGAIVLSIGEPGFELPRHVLEAGMACLDRDETNYTPNAGITALREAFAARFREHNGVEIGAERVYVVDGAQQGLHFAMSLLLSPGDEILIPNPGYPTFAMTSQLLHAKPVRYPLYPEHDFQPRIEDIEALITPQSRVLILNSPSNPLGAVLGGDLTRGLVDLARRHDLWIISDECYEAFTYDVPHVSPARFDSDVPGEARVFTSLTLSKTYGLTGLRIGALVCPPGLERKMNNVMESIVSCVASPSQYAAIAALTGPQDYVSHAHAHYRSNRDAASAVLASKGIPFLSAQGAFYLWADVSHVSGGDVRSWVRTFLADAGVSFAPGTAFGSIGEGWIRIALCGAQAELVEGVGRLPSRG
>NC_008541.1|WP_011691285.1|1584579_1585500_+|tRNA-pseudouridine(55)-synthase-TruB
MLSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTSKTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKVNGERAYARVRSGEDVKLAARPVTIHRFDVHAVRPERAGAVLDVDVTVECSSGTYIRALARDLGEALGTGGHLTALRRTQVGPYTLDQARTLEQLAEELEVLEMSQAARALMPNRELSEDEATEISFGRRIAAGAGAGTPEAATADNPAAAFAPDGSLVALLADAGGYAKPVLVFAPSNEQPGK
>NC_008541.1|WP_011691286.1|1585501_1585855_+|hypothetical-protein
MDAYFYIILAVGLLSTVICAVAGIMKKAPNDATILSVAAVELALLVYLVGSIVRVASGERIAGEPWEFWGYLVTALILPVGAVYWSILERTRWSNFVLAAVGVTALVMAARMNQIWY
>NC_008541.1|WP_156810637.1|1585873_1586329_+|hypothetical-protein
MTPQTPVNKTDAAPKAQSKDTRNTGPGRLLIAVYAVFAISATARAGYQILTKFSEAPLAYLLSAFAALVYVVATVSLAKAGRTWFKVSVAAVLVELVGVVVVGALSIFDSVNFPHETVWSLFGRGYAFIPLLLPILGLVWLYRRRPAPREV

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Crispr_ID: NC_008541_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008541_4

3596487-3596581

Orphan

Consensus_repeat	Method
GGCGGGTTTCGACAGGCTCAACCACCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008541_4

>merge|NC_008541|4|3596487-3596581|CRISPRCasFinder
TTGTGGTTTCGACAGGCTCAACCACCGAACGGAAAGGCTCAACTACCGGGGTGTGAGTTGCGACAGAACCGGTCTCGACAGGCTCGACGACCGGC

>NC_008541|4|4|3596487-3596581|CRISPRCasFinder
TTGTGGTTTCGACAGGCTCAACCACCGAA	CGGAAAGGCTCAACTACCGGGGTGTGAGTTGCGACAG
AACCGGTCTCGACAGGCTCGACGACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008541.1\|WP_156810690.1\|3602797_3602935_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693013.1\|3579441_3584505_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NC_008541.1\|WP_156810692.1\|3605091_3606249_-\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_156810689.1\|3591463_3591598_-\|DUF2116-family-Zn-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|286923
NC_008541.1\|WP_052309715.1\|3588447_3589281_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
NC_008541.1\|WP_011693017.1\|3590181_3591303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238141
NC_008541.1\|WP_011693029.1\|3607781_3609044_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
NC_008541.1\|WP_011693022.1\|3598110_3599334_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NC_008541.1\|WP_011693011.1\|3578128_3578671_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693026.1\|3604143_3605082_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_008541.1\|WP_083812709.1\|3591693_3593793_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_008541.1\|WP_011693019.1\|3594190_3595264_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_008541.1\|WP_011693028.1\|3606529_3607705_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|274425
NC_008541.1\|WP_011693024.1\|3600393_3601905_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NC_008541.1\|WP_156810691.1\|3602931_3603165_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693021.1\|3597001_3598114_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_008541.1\|WP_011693016.1\|3589830_3590181_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693012.1\|3578700_3579270_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215296
NC_008541.1\|WP_011693014.1\|3584999_3588389_+\|chromosome-condensation-protein-RCC1	unknown	unknown	gnl\|CDD\|227511
NC_008541.1\|WP_011693023.1\|3599493_3599958_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NC_008541.1\|WP_011693013.1\|3579441_3584505_-\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.14402e-104
NC_008541.1\|WP_052309715.1\|3588447_3589281_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.05992e-63
NC_008541.1\|WP_156810689.1\|3591463_3591598_-\|DUF2116-family-Zn-ribbon-domain-containing-protein	gnl\|CDD\|286923	pfam09889, DUF2116, Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.	0.00126107
NC_008541.1\|WP_011693017.1\|3590181_3591303_+\|hypothetical-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	7.89936e-14
NC_008541.1\|WP_011693029.1\|3607781_3609044_-\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.20489e-10
NC_008541.1\|WP_011693022.1\|3598110_3599334_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	3.4328e-152
NC_008541.1\|WP_011693026.1\|3604143_3605082_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	3.68635e-40
NC_008541.1\|WP_083812709.1\|3591693_3593793_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.35308e-66
NC_008541.1\|WP_011693019.1\|3594190_3595264_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.03673e-42
NC_008541.1\|WP_011693028.1\|3606529_3607705_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.64837e-18
NC_008541.1\|WP_011693024.1\|3600393_3601905_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.54639e-71
NC_008541.1\|WP_011693021.1\|3597001_3598114_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	6.4725e-145
NC_008541.1\|WP_011693012.1\|3578700_3579270_-\|hypothetical-protein	gnl\|CDD\|215296	PLN02540, PLN02540, methylenetetrahydrofolate reductase.	0.0019951
NC_008541.1\|WP_011693014.1\|3584999_3588389_+\|chromosome-condensation-protein-RCC1	gnl\|CDD\|227511	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton].	5.45444e-36
NC_008541.1\|WP_011693023.1\|3599493_3599958_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.23498e-27

>NC_008541.1|WP_011693019.1|3594190_3595264_-|acyltransferase
MTKTGDRVAALDGIRGLAILAVVAYHSGLPLRYSGVVGVTIFFVLSGYLITSILDRELSQTGRVALVKFYMRRFLRLGPAIVAAVILTTIFMLVTRDPQLAGNYWLQVVSTLTYTSDFFMAGVADMQVLGHTWSLSIEEQFYLVWPLALVGTMAVAKSRKHAVWIVAGAALLALAWRLAAPMVFSDWERTYYGPDTVFYALLIGCTLALLPRGSVEVPRWAGYSAVAVLGVLAAIPSIEVDGIDRTVTLYVGAAAALFAVVAVAAAPKLKLLTIKPLLFAGTISYGWYIWHQIFFKVQPFGLQVEGLKMTLPLLAASALLAWASFKYFEKPIQDRYKHRFHAGRATETQAVTEAART
>NC_008541.1|WP_083812709.1|3591693_3593793_-|acyltransferase
MCGSHHNRGGQVGLALTRGHKTKDQFRPEIQALRALAVSLVVVYHLWPTRIEGGYVGVDVFLVISGYLITMHLLKGFAESPRLRLSDFYSARIRRLLPASLFVLAVVGISTFVLLPQTLWGTVGRQVLASAFYVQNWVLAADSVDYLAAGAGASPVQHYWSLSVEEQFYLVWPLFLISLLWIVKRLGGSRRLTVSLGVATATVVSFAVSLISTASSPQDAYFVTPTRIWEFGVGALLAICMTRQVGSKPFRSALSWVGVVGVLASAVIYTGSTPFPGYAALLPVLSTAAVIAAGSVDTAWAPTRLFSLRPVQFLGDISYSLYLWHWPLIVIVPIAVSGIGSTLTSAAKVGIIVASVVLAWTTKVQIEDRYRRRPERSRRRVSGGPRSRTVLASALAGMMLVGLVGGSAAAVSHSRVAEATAELAEFESGPTECRGARALDPSEAIICGSTQSQTVFPDPLIASASAADQGCQQRVTRAAVISCMYGNSGKLKVAMVGDSHANQWFPAVAKIAEDKGWTLTTYFKSGCAFNMAPSGHKSCAEWNSSVRLSLADGGFDVIITSNVATTDYVGGYTAGVEGFRRTWQGLNDGGAKIIAIADTPRASSAGVADPPSCVEAKGVDGCSFDRAEALSSDPQKEAAEDMDLVDYLDMNDLFCIESKCPAVAGSVLVYRDGNHMTTTYARSLTTYLQKRMSFAGIRN
>NC_008541.1|WP_156810689.1|3591463_3591598_-|DUF2116-family-Zn-ribbon-domain-containing-protein
MSTPLDRLLMWFNHPRTCWTCGVPSPDHSFCSDECGKEYADNIA
>NC_008541.1|WP_011693017.1|3590181_3591303_+|hypothetical-protein
MGILDAPAVQPSKVGLEALYAKTSASLGLFHTSLAGRHFAPCKILVVGDSISEGAGATLNIRNRWQDRLKENLRSRFPTDGSPGTTLHYVPAMNVVNMPGDMAVRSAGVTTGTSFGFGARHAQLTAAGHTVTFTVTGTSAKVVYPKSSGGGSFTWQVDGGTVSSAVSQSAGSLTDGFTTDIPLGASGSHTVVIAWVSGGSVFIDGLLVYNGDETKGIHVIDGAHSGWGAQNFQLNGIQFYQGSLTTMLQPSLVIIALGINDFAFGSLSIANYKIHMQSNIDRYRGAIPTKPPSILLVAMHRRSPVSAVATWAEYVQAMKELAQANDGVAFLDLSARLPQVSGDTRGLYADEVHPANLGHSAIADNVTSFIVPR
>NC_008541.1|WP_011693016.1|3589830_3590181_+|hypothetical-protein
MSGRSHHRLAVGTIEKGLPLRVQNLTYAGLIQLAKNPDTLIAGAVTVDGSNLVASAVVLWPDGSPGTLTITSRDTLGGVLAYNITYGSPVTKTCTQPTITRNAAGAATNVPQIVVS
>NC_008541.1|WP_052309715.1|3588447_3589281_-|MBL-fold-metallo-hydrolase
MNTENRMSRWMEVGQDNYVLTTEGSKLNTGLIVGAERAMVIDTGGGPRQGREILAAVREKTQLPLVVVNTHAHYDHFFGNAIFADEGVTEFYAHENCAREIEENGDRQRRSVATLEPEMAAGEGADAELVVPNAIVKDQPVLVDLGGQTVTLFYLGRGHTDGDLLVGTSTTLYAGDLVEQGSHPSFEDAFPEEWADALRHISALRHRYEFLIPGHGDPCSDQFVKTMANTMSTAVRQAIQSIRDTPSDATKAIPVLPYGPEQSRWFIKRLQETQAGH
>NC_008541.1|WP_011693014.1|3584999_3588389_+|chromosome-condensation-protein-RCC1
MFSRGVARLLAVVLFVVAPALGVLPAAIAADPVVEDVVSFADVPDSSQFHKEIAWLASEGISTGWDVGGGVRQYRPLDSIARDAMAAFLYRKAGSPAFTPPNPSPFTDVAPGAAFYKEITWLASKGISTGWDVGGGKREYRPWNPIARDAMAAFLYRFDQSPPFTTPAQSPFVDVVAGGAFYREITWLASSGISTGWDVGGGARQYRPLSGIARDAMAAFLYRYSSDKVPADPAAPAAGTMTVAPDVEILDAAQLDTAQLSAGVLTLPWDKASEIRPNDVLVAGVTTGTPEGLLVRVVQVVRDPGGVTVVKTRPATLTEAVVSTSGLLELSGSPEWSTFTPEPDVTVTTPPAGAAPTSGIPQPEATVEGEVFSQSFSVKKTLKAELGTDQLHGGGSITVESTIKAAARAKMTFEAGFLQLKEASVVLTPSFTAQHSVSVSGSLEGKASAKLGVLKAIFVYPGAVPVVVTAEAEVALNLTATGEAEISFVTAQSISSDVGIKYRDGSFNLINTKPQTAGVQNDVKATASLTAALSLDFDATIKLYGVAGITFGAGPYVSAEIAVTTSNGNQTWSCPIEIGFASRLGAVAGIEVMGFKLGEWRDVNTLTWNLAEPNPCEGTPVQAPGTSTAPLAITTAELPTGTVGQAYSASLNGSGGTKPYTWTITSGSLPPGLRLEPSNGSITGTPTTAGVQPLVVALTDSHGSRTALSAPLTVAPAGLAGIKAVSASHSAAYALRNDGTVWAWGRNNAGQLGNGATTDSAAPVQVTGITDVESVATTSGGAVYAKRTDGTVWAWGNNAYGQLGNRTTTNSAVPVQVTGLSDVQTVTASEEESAFAIKADGTVWAWGANWGGQLGAGHYANQSSPAQIPELTGAKSITTGSGVYVAYAVMADGSVRAWGDNSSGKLGNGSTATTSPVPVQVVGLTDITSVKSSGGAAIALKLDGTVWAWGSNGWGELGNGSYGSYSSVPVRVNGLSDVASIEAKRSASIYALRKDGTTWAWGANLQGELGIGSTTPSPTPVQVTGLSQTLSIITNGYSSVHALQKDGTVWAWGWNGYGQLGNATTTDSWVPGRAQGISDVRQLMTTDGSAYALKADGSLLAWGNNEFGQLGIGTTTNATVPVLVGRQSG
>NC_008541.1|WP_011693013.1|3579441_3584505_-|S8-family-serine-peptidase
MLDALCARLAGRIVLAGVVSLVSASLVSTPAVADDELALPPGNVTGPLHPSDVLTDQFIVKFKEKANASSADRNEAYGRVTRDLGIPVTDVRETATGARVLQTGTALAGPASDKVLASLRADPDVEFAEPDARMYPLADPDDTYYSLQWDMFEQTGGMRMPRAWSVTKGSGVVVAVIDTGITDHSDLNANVLPGYDMISSSAIARDGDARDANPRDEGDWTLDGTCGAGTTGSYSSWHGTHVAGTVAAIANNGQGVTGVAPESRILPVRALGACGGYTSDIVDSIVWAAGGLVPGAPVNPTPARVINMSLGGNRACSTAYQTAIDFAYGAGAAVVVAAGNENRPAADSAPANCQNVITVAASGRSGSRAPYSNYGDAVDVTAPGGDMTWSAQDGIASTKNNGAYSAVAEGYFYSQGTSMAAPHVSGLAALLMAAGGSQVTPKSVEDRIKGTARVMPGSCSGGCGAGLADAANALGVPVHEIVAVATPAPVVFADPDGTAGDTYTIPSTEGVDYVVDGLLVRAGTYPGQGTLTVTAKAQAGFMLASGAQTEWAHSFDTSTADPDITGPVLASSSVSPTSFNLDDGPGTVTVSVRLTDQTGAEAPYVLLRHDASGQTQGFGALALVSGDAKDGVWERSITIPQGAATGQWKANLYPLDDVLGNTSTGFQTIGTVDVAGTPADMTGPVLASSSVSPTSFNLDEGPATVVVSVRLTDQTGAEAPYALLRHDASGQTQGFGALALVSGDAKDGVWERSITIPQDAATGQWKANLYPLDDTLGNTSTGFQTIGTVDVVRLNRATPADVTFTDKDGTAEDTYTVPVTDGVEYLVADAVVDAGTHQGSGTVTVRARATADYVLAEGATAEWSFNFKATPYAVTPAAVVIVDKDGTAEDTYTVPATEGVEYLLGDAVVEAGTHPGSGTVTVKARAKTDYVLAEGAAAEWSFNFKATPYAVTPAGVVFTDKDGTAEDTYTVPATEGVEYLLGDAVVEAGAHPGTGTVTVRARAKADYVLAEGATAEWSATFKATPYSVTPAAVVFVDKDGTAEDTYTVPATEGVEYLLGDAVVEAGAHPGTGTVTVRARAKADYVLAEGATAEWSTTFKATPYSVTPAAVVFVDKDGTAEDTYTVPATGGVEYLLDEAVVEAGTHPGSGTVTVKARAKTDYVLAEGATAEWSATFKATPYAVTPAAVVFVDKDGTAEDTYAVPSMEGIEYLLGDTVVEAGTHQGSGTVTVRARAKTDFVLAEGATAEWSFTFKATPYLATPAAVVFVDKDGTAEDTYTVPATEGVEYLLGDNTVEAGTYPGSGTVTVKARAKADYVLAEGVTAEWSVTFKATPYSVTPAAAVFTDKDGTAEDTYRVPTTVGVEYLVAGILTGAGDYPGTGTVTVTARAKPDYVFAEAAIAEWSTTFKATPYSVTPAAVVFSDRDGTADDTYTVPSTEGVDYLVGGNVVTAGTHPGTGTVTVTARAKADYIRAEGAAAEWTATFKTTAAAYEPPAVSPFADVSTGQQFYKEMAWLAERKISTGWTEADGSRSYRALQPISRDAMAAFLYRMAGSPDYTPPAVSPFADVLTGQQFYKEMAWLAEQRISTGWTEADGSRTYRPLQPISRDAMAAFLYRMAGSPQYTPPAVSPFADVSTGQQFYKEMSWLAENGISTGWTEAGGARSYRPLQPISRDAMAAFLFRLDGLIH
>NC_008541.1|WP_011693012.1|3578700_3579270_-|hypothetical-protein
MFEGVPDEDAWRNCTTLEGACELTARWLEGTLSYVPGYAAPQYAGENGPMSEALAAINRLGFLTDDSQPGAEMSGGHGQRAFVTGRCTEQSAAIISAVLVETDLVVLVFPPGESGTGQICVTLDGAREFTWLGSSGGPSYAHETYTDWTNETLAKSLAECWELQIFDPVWGRNTKLVPLLQKALITAKG
>NC_008541.1|WP_011693011.1|3578128_3578671_+|hypothetical-protein
MRNRTKTGLMSMAAAAVLAVGMAPGTAVAHEGSGHGGGSDKSDDWKSSSEQRRLVKTLRNVTDDYRWLDNAIEDGYKKITECIDKPGVGAMGFHYAKESLIDDKTQARKPEILVYMPNERGRMKLVAVEFLSTAAERPELAGVDFDDGPFPGTFALHAWVWKDNPDGMFAAYNPAHSCPK
>NC_008541.1|WP_011693021.1|3597001_3598114_-|alpha-ketoacid-dehydrogenase-subunit-beta
MSPTVTTSSEVNGNVSAATARAAAKAAATAESTGPQTITLAKALNTAMADAMHADPSVLVFGEDVGMLGGVFRITDGLTKTFGESRCFDTPLAESGIVGMAVGMAMNGMRPVIEMQFDAFAYPAFEQIVSHVAKMHNRTKGAVKLPMVIRVPYAGGIGGVEHHCDSSESYYAHTAGLKVFTPATVADGYRMLREAIDSDDPVMFMEPKKLYWSKDLVDLDGLRAEHAANTERGTSSEGRAVVARPGTDATLIAYGPSVPTALAAAAAAAEEGRSLEVIDVRSIVPFDDETVCASVRKTGRAVVIAEAHGFASVSSEIVARVQERCFHYLAAPIRRVTGFDVPYPAPKLEHYYLPGVDRILDAVDDLQWED
>NC_008541.1|WP_011693022.1|3598110_3599334_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MTISADHTALGQDAPEQPAGNHVTEDAAAEAVRKFGITVEDYMLPARHQIQMVDQDGTLNPHTEQGAQPGHEYSLPGDAELLAAYEQLVVGRRVNDQNSALVRQGRMAVYPSSHGQEACQVAAALCLADGDWIFPTYRDSVAVMARGVDPVQTMTLFRGDWHSGYDPLKHKVGIQCTPLTTQLLHAVGVAHAAKLRGEDTVVLAMCGDGATSEGDFHEALNFAAVFHLPVIFFVQNNQYAISVPLAHQSVAPSLAHKAVGYGMAGERVDGNDVVALLAVLGRAVKLAREGSGPLLVEAHTYRMQAHTNADDATRYRQDSEVAQWVAKDPLKRMQTYLTARGLLDDDGAARIADKAEAVATQLREGLGEDVPVDPQDLFRYVFSTPTPQLKEQSAMLADEISRDGAAK
>NC_008541.1|WP_011693023.1|3599493_3599958_+|Lrp/AsnC-family-transcriptional-regulator
MAETEADQVPVPLDDVDRNIIAELTRDGRMSVTQVAENVHISRAHAYTRIARLTGEGVLTKFTALVDPIKAGLKSSAYVTLKVRQHSWRELRELLRAIPEVHHIALVGGDFDVILLVRAVDNVDLRRVIFDQLQSMPGVLDTQTFLVFEDVDTR
>NC_008541.1|WP_011693024.1|3600393_3601905_+|polysaccharide-biosynthesis-tyrosine-autokinase
MDLHDSLRILRRNWILIVAATLAGLLMSGGASVLTKPTYRADTQLFVAIQSSGSVQELQQGNTFSQARVQSYVKTVASPIVLQPVIDTLGLPSTAEELAGRVKASTDLNTVLINISVEDNSPVQAAATAQAVADSLIRVVDTLEKPKTGGTSPVSLSITKPAKAPSVPSAPDTRLNLMVGLLLGLAAGVGAALLRTSLDNRIRGEADLRRVTELPLLGGISFDQDATRKPLLTQTAAQSPRSESFRQLRTNLQFANVSGRASTVVVTSSLPGEGKSTTATNLAISLAQAGQKVCLIDADLRRPMINEYLGLDRSAGLTTALVGLADVSDLLQPWGDDSLYVLASGQIPPNPSELLGSDEMKQLITRLEDAFDTVVIDAPPLLPVTDAAVLSQHVGGVVVVVGSQKLRQNDLEKSLGALNMVGANVLGIVLNRLPVKGPDSYAYTYYSHDGATATAKRPKANAQERGQQTNAGEPDLHYGDFDRQILETQSQPAHVFPRTSAER
>NC_008541.1|WP_156810690.1|3602797_3602935_+|hypothetical-protein
MAPEFAFRSSVRLPWDYYVRVFSNAYSVDPGAIGRIVNVEADLER
>NC_008541.1|WP_156810691.1|3602931_3603165_+|hypothetical-protein
MTVSADGRCWPGTSGNGPGTRSSPTPGTWTRPSLRRIHRSLKTGRSWVVEERDLAVYDELFGVAIPDDARELSGAGR
>NC_008541.1|WP_011693026.1|3604143_3605082_-|glycosyltransferase-family-2-protein
MEYGKSMDSSNKINGPKNRISVWIVNYNSSQYLDRCLSSLMHEPVDEVIILDNGSQENEVIAAHEIVSKFENARFVKMETNLGFGGGMNAISRIPNFEPDGIIWLLNPDCEVETGATSKLMEALDSYDIVSPLITSGVSTDRKVWFAGGVIEPAKGACSHVGYGVSISEFSETLALPSSFLSGASLMMKRSTWDVLGGFREDLFLYWEDADLCLRASALQMKLGIIPQAQVWHREGGSSVNDGSLRSKTYYYYIARNRIIVCSTLAAKYDIVFFRGIFESLKLIARPLIRERSGRMGKFLAAAKGTIDGIMA
>NC_008541.1|WP_156810692.1|3605091_3606249_-|hypothetical-protein
MGAIYSYGVLVTLLTLPFLASELLGESPINKSIKFMVSVGVWMLLLVSGAILSRLVPKAIQLGCAIALAGMTIGAILYHGGFPLVDQIDLLHSYPNFQQRVRSTRFEASSLGSGMIVCLGLIAIHSPRKLAVIGFSLGLVLIGQISESRGTTLTVFVTLLAVPFAIWMQLRKAGLATVTTRFYSSGIGVLAIILSFRLDYFLGSPLWSALGLKTEGTSDASRSMWADASLSALAQYPFGMGYAAYLAWLPKLIENSTLSAVGQFSLRDLSEMINQSRAVSDATLSPKNLVGIAAVHLGVIGVLVVVALYSAVIKNAISSASVGFGSRFVVGISLIVVSSTYYTSVFSMDQAFLFGALAWGSGQLAQEPNVAGLKVLSPAVEQRKM
>NC_008541.1|WP_011693028.1|3606529_3607705_-|glycosyltransferase-family-4-protein
MHVIVVTDDVLYPTNSGGRSALLGECEALVAAGCELTLVVSHRNKLSAHEVSQHEKLASRVVFIQRSGFAATTMAHPLRPFQMQSRKTVLREMALGLGREDTVGVIASHEWTIPLAKSIAGPLGLRVALRSHNDEVAYMQALARSASGLRRAYCWAEAVRLRIMLKELYRDIAAVAVLSEGDSDSYRPFGLTPTFVPAVLFRDHDANGSAANIPPESARLLFVGALDMPQAVEGLKWFCSRVLPLVRAAVPHAELHVAGRRPNREIAQLLSAMDGVEFHGEVSSLEPLYAATRIFVNPVFSGSGVNMKVGPPAVRGIPVVTTTTGARGLSHLAPGFVIADDEEEFAAGCIRLLEDNDMWSQKSGDLSTRAGLISSPSIARGLLELFDETRV
>NC_008541.1|WP_011693029.1|3607781_3609044_-|hypothetical-protein
MGNATKSNWQGLLPVRIAFFTLGPLFSIIVPILTLPAISTNFGHSGWASIAVGQSLGIAAAIVIELGWTVAGPLQVARADHNGQASAFRRSLLERGCVSLLSLPVVGVLIQLVNPDYDLEAFLTATAMALGGMSAAWFYVGTGASLKMLLMDSLPRVATSVGGAVMLMNGAPLIALPLTQLTASVFLPFVPLFWLPRVQRQDKSLGLRSELAFTWKAQGAAFVTRVASSAYVALPTALMASVAPVAQVASYAAVDRVGRTALAALSPFNLALQGWIPAADGHERRRRMYIALWLSSVLAILSFIAFWLLAPWVIGFLFAGEILPDNTAIFSFSLAVGAVVLSRCTGIQCLAVLGKTWTTASSTVVGLLISVPMVLVLGAAYGAVGVAWAIATTELSVLGVQVVALLAMAKSRRSIQRKKL

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Crispr_ID: NC_008541_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008541_3

3596187-3596282

Orphan

Consensus_repeat	Method
GGCGGGTTTCGACAGGCTCAACCACCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008541_3

>merge|NC_008541|3|3596187-3596282|CRISPRCasFinder
GGCGGGTTTCGACAGGCTCAACCACCGAACGTCGGTCATCCACCGAACGCGCCGCGGCCACGGGGCGGCGGGTTTCGACTGGCTCAACCACCGAAG

>NC_008541|3|3|3596187-3596282|CRISPRCasFinder
GGCGGGTTTCGACAGGCTCAACCACCGAA	CGTCGGTCATCCACCGAACGCGCCGCGGCCACGGGGC
GGCGGGTTTCGACTGGCTCAACCACCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008541.1\|WP_156810690.1\|3602797_3602935_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693013.1\|3579441_3584505_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NC_008541.1\|WP_156810692.1\|3605091_3606249_-\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_156810689.1\|3591463_3591598_-\|DUF2116-family-Zn-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|286923
NC_008541.1\|WP_052309715.1\|3588447_3589281_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
NC_008541.1\|WP_011693017.1\|3590181_3591303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238141
NC_008541.1\|WP_011693029.1\|3607781_3609044_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
NC_008541.1\|WP_011693022.1\|3598110_3599334_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NC_008541.1\|WP_011693011.1\|3578128_3578671_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693026.1\|3604143_3605082_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_008541.1\|WP_083812709.1\|3591693_3593793_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_008541.1\|WP_011693019.1\|3594190_3595264_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_008541.1\|WP_011693028.1\|3606529_3607705_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|274425
NC_008541.1\|WP_011693024.1\|3600393_3601905_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NC_008541.1\|WP_156810691.1\|3602931_3603165_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693021.1\|3597001_3598114_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_008541.1\|WP_011693016.1\|3589830_3590181_+\|hypothetical-protein	unknown	unknown	unknown
NC_008541.1\|WP_011693012.1\|3578700_3579270_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215296
NC_008541.1\|WP_011693014.1\|3584999_3588389_+\|chromosome-condensation-protein-RCC1	unknown	unknown	gnl\|CDD\|227511
NC_008541.1\|WP_011693023.1\|3599493_3599958_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NC_008541.1\|WP_011693013.1\|3579441_3584505_-\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.14402e-104
NC_008541.1\|WP_052309715.1\|3588447_3589281_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.05992e-63
NC_008541.1\|WP_156810689.1\|3591463_3591598_-\|DUF2116-family-Zn-ribbon-domain-containing-protein	gnl\|CDD\|286923	pfam09889, DUF2116, Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.	0.00126107
NC_008541.1\|WP_011693017.1\|3590181_3591303_+\|hypothetical-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	7.89936e-14
NC_008541.1\|WP_011693029.1\|3607781_3609044_-\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.20489e-10
NC_008541.1\|WP_011693022.1\|3598110_3599334_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	3.4328e-152
NC_008541.1\|WP_011693026.1\|3604143_3605082_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	3.68635e-40
NC_008541.1\|WP_083812709.1\|3591693_3593793_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.35308e-66
NC_008541.1\|WP_011693019.1\|3594190_3595264_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.03673e-42
NC_008541.1\|WP_011693028.1\|3606529_3607705_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.64837e-18
NC_008541.1\|WP_011693024.1\|3600393_3601905_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.54639e-71
NC_008541.1\|WP_011693021.1\|3597001_3598114_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	6.4725e-145
NC_008541.1\|WP_011693012.1\|3578700_3579270_-\|hypothetical-protein	gnl\|CDD\|215296	PLN02540, PLN02540, methylenetetrahydrofolate reductase.	0.0019951
NC_008541.1\|WP_011693014.1\|3584999_3588389_+\|chromosome-condensation-protein-RCC1	gnl\|CDD\|227511	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton].	5.45444e-36
NC_008541.1\|WP_011693023.1\|3599493_3599958_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.23498e-27

>NC_008541.1|WP_011693019.1|3594190_3595264_-|acyltransferase
MTKTGDRVAALDGIRGLAILAVVAYHSGLPLRYSGVVGVTIFFVLSGYLITSILDRELSQTGRVALVKFYMRRFLRLGPAIVAAVILTTIFMLVTRDPQLAGNYWLQVVSTLTYTSDFFMAGVADMQVLGHTWSLSIEEQFYLVWPLALVGTMAVAKSRKHAVWIVAGAALLALAWRLAAPMVFSDWERTYYGPDTVFYALLIGCTLALLPRGSVEVPRWAGYSAVAVLGVLAAIPSIEVDGIDRTVTLYVGAAAALFAVVAVAAAPKLKLLTIKPLLFAGTISYGWYIWHQIFFKVQPFGLQVEGLKMTLPLLAASALLAWASFKYFEKPIQDRYKHRFHAGRATETQAVTEAART
>NC_008541.1|WP_083812709.1|3591693_3593793_-|acyltransferase
MCGSHHNRGGQVGLALTRGHKTKDQFRPEIQALRALAVSLVVVYHLWPTRIEGGYVGVDVFLVISGYLITMHLLKGFAESPRLRLSDFYSARIRRLLPASLFVLAVVGISTFVLLPQTLWGTVGRQVLASAFYVQNWVLAADSVDYLAAGAGASPVQHYWSLSVEEQFYLVWPLFLISLLWIVKRLGGSRRLTVSLGVATATVVSFAVSLISTASSPQDAYFVTPTRIWEFGVGALLAICMTRQVGSKPFRSALSWVGVVGVLASAVIYTGSTPFPGYAALLPVLSTAAVIAAGSVDTAWAPTRLFSLRPVQFLGDISYSLYLWHWPLIVIVPIAVSGIGSTLTSAAKVGIIVASVVLAWTTKVQIEDRYRRRPERSRRRVSGGPRSRTVLASALAGMMLVGLVGGSAAAVSHSRVAEATAELAEFESGPTECRGARALDPSEAIICGSTQSQTVFPDPLIASASAADQGCQQRVTRAAVISCMYGNSGKLKVAMVGDSHANQWFPAVAKIAEDKGWTLTTYFKSGCAFNMAPSGHKSCAEWNSSVRLSLADGGFDVIITSNVATTDYVGGYTAGVEGFRRTWQGLNDGGAKIIAIADTPRASSAGVADPPSCVEAKGVDGCSFDRAEALSSDPQKEAAEDMDLVDYLDMNDLFCIESKCPAVAGSVLVYRDGNHMTTTYARSLTTYLQKRMSFAGIRN
>NC_008541.1|WP_156810689.1|3591463_3591598_-|DUF2116-family-Zn-ribbon-domain-containing-protein
MSTPLDRLLMWFNHPRTCWTCGVPSPDHSFCSDECGKEYADNIA
>NC_008541.1|WP_011693017.1|3590181_3591303_+|hypothetical-protein
MGILDAPAVQPSKVGLEALYAKTSASLGLFHTSLAGRHFAPCKILVVGDSISEGAGATLNIRNRWQDRLKENLRSRFPTDGSPGTTLHYVPAMNVVNMPGDMAVRSAGVTTGTSFGFGARHAQLTAAGHTVTFTVTGTSAKVVYPKSSGGGSFTWQVDGGTVSSAVSQSAGSLTDGFTTDIPLGASGSHTVVIAWVSGGSVFIDGLLVYNGDETKGIHVIDGAHSGWGAQNFQLNGIQFYQGSLTTMLQPSLVIIALGINDFAFGSLSIANYKIHMQSNIDRYRGAIPTKPPSILLVAMHRRSPVSAVATWAEYVQAMKELAQANDGVAFLDLSARLPQVSGDTRGLYADEVHPANLGHSAIADNVTSFIVPR
>NC_008541.1|WP_011693016.1|3589830_3590181_+|hypothetical-protein
MSGRSHHRLAVGTIEKGLPLRVQNLTYAGLIQLAKNPDTLIAGAVTVDGSNLVASAVVLWPDGSPGTLTITSRDTLGGVLAYNITYGSPVTKTCTQPTITRNAAGAATNVPQIVVS
>NC_008541.1|WP_052309715.1|3588447_3589281_-|MBL-fold-metallo-hydrolase
MNTENRMSRWMEVGQDNYVLTTEGSKLNTGLIVGAERAMVIDTGGGPRQGREILAAVREKTQLPLVVVNTHAHYDHFFGNAIFADEGVTEFYAHENCAREIEENGDRQRRSVATLEPEMAAGEGADAELVVPNAIVKDQPVLVDLGGQTVTLFYLGRGHTDGDLLVGTSTTLYAGDLVEQGSHPSFEDAFPEEWADALRHISALRHRYEFLIPGHGDPCSDQFVKTMANTMSTAVRQAIQSIRDTPSDATKAIPVLPYGPEQSRWFIKRLQETQAGH
>NC_008541.1|WP_011693014.1|3584999_3588389_+|chromosome-condensation-protein-RCC1
MFSRGVARLLAVVLFVVAPALGVLPAAIAADPVVEDVVSFADVPDSSQFHKEIAWLASEGISTGWDVGGGVRQYRPLDSIARDAMAAFLYRKAGSPAFTPPNPSPFTDVAPGAAFYKEITWLASKGISTGWDVGGGKREYRPWNPIARDAMAAFLYRFDQSPPFTTPAQSPFVDVVAGGAFYREITWLASSGISTGWDVGGGARQYRPLSGIARDAMAAFLYRYSSDKVPADPAAPAAGTMTVAPDVEILDAAQLDTAQLSAGVLTLPWDKASEIRPNDVLVAGVTTGTPEGLLVRVVQVVRDPGGVTVVKTRPATLTEAVVSTSGLLELSGSPEWSTFTPEPDVTVTTPPAGAAPTSGIPQPEATVEGEVFSQSFSVKKTLKAELGTDQLHGGGSITVESTIKAAARAKMTFEAGFLQLKEASVVLTPSFTAQHSVSVSGSLEGKASAKLGVLKAIFVYPGAVPVVVTAEAEVALNLTATGEAEISFVTAQSISSDVGIKYRDGSFNLINTKPQTAGVQNDVKATASLTAALSLDFDATIKLYGVAGITFGAGPYVSAEIAVTTSNGNQTWSCPIEIGFASRLGAVAGIEVMGFKLGEWRDVNTLTWNLAEPNPCEGTPVQAPGTSTAPLAITTAELPTGTVGQAYSASLNGSGGTKPYTWTITSGSLPPGLRLEPSNGSITGTPTTAGVQPLVVALTDSHGSRTALSAPLTVAPAGLAGIKAVSASHSAAYALRNDGTVWAWGRNNAGQLGNGATTDSAAPVQVTGITDVESVATTSGGAVYAKRTDGTVWAWGNNAYGQLGNRTTTNSAVPVQVTGLSDVQTVTASEEESAFAIKADGTVWAWGANWGGQLGAGHYANQSSPAQIPELTGAKSITTGSGVYVAYAVMADGSVRAWGDNSSGKLGNGSTATTSPVPVQVVGLTDITSVKSSGGAAIALKLDGTVWAWGSNGWGELGNGSYGSYSSVPVRVNGLSDVASIEAKRSASIYALRKDGTTWAWGANLQGELGIGSTTPSPTPVQVTGLSQTLSIITNGYSSVHALQKDGTVWAWGWNGYGQLGNATTTDSWVPGRAQGISDVRQLMTTDGSAYALKADGSLLAWGNNEFGQLGIGTTTNATVPVLVGRQSG
>NC_008541.1|WP_011693013.1|3579441_3584505_-|S8-family-serine-peptidase
MLDALCARLAGRIVLAGVVSLVSASLVSTPAVADDELALPPGNVTGPLHPSDVLTDQFIVKFKEKANASSADRNEAYGRVTRDLGIPVTDVRETATGARVLQTGTALAGPASDKVLASLRADPDVEFAEPDARMYPLADPDDTYYSLQWDMFEQTGGMRMPRAWSVTKGSGVVVAVIDTGITDHSDLNANVLPGYDMISSSAIARDGDARDANPRDEGDWTLDGTCGAGTTGSYSSWHGTHVAGTVAAIANNGQGVTGVAPESRILPVRALGACGGYTSDIVDSIVWAAGGLVPGAPVNPTPARVINMSLGGNRACSTAYQTAIDFAYGAGAAVVVAAGNENRPAADSAPANCQNVITVAASGRSGSRAPYSNYGDAVDVTAPGGDMTWSAQDGIASTKNNGAYSAVAEGYFYSQGTSMAAPHVSGLAALLMAAGGSQVTPKSVEDRIKGTARVMPGSCSGGCGAGLADAANALGVPVHEIVAVATPAPVVFADPDGTAGDTYTIPSTEGVDYVVDGLLVRAGTYPGQGTLTVTAKAQAGFMLASGAQTEWAHSFDTSTADPDITGPVLASSSVSPTSFNLDDGPGTVTVSVRLTDQTGAEAPYVLLRHDASGQTQGFGALALVSGDAKDGVWERSITIPQGAATGQWKANLYPLDDVLGNTSTGFQTIGTVDVAGTPADMTGPVLASSSVSPTSFNLDEGPATVVVSVRLTDQTGAEAPYALLRHDASGQTQGFGALALVSGDAKDGVWERSITIPQDAATGQWKANLYPLDDTLGNTSTGFQTIGTVDVVRLNRATPADVTFTDKDGTAEDTYTVPVTDGVEYLVADAVVDAGTHQGSGTVTVRARATADYVLAEGATAEWSFNFKATPYAVTPAAVVIVDKDGTAEDTYTVPATEGVEYLLGDAVVEAGTHPGSGTVTVKARAKTDYVLAEGAAAEWSFNFKATPYAVTPAGVVFTDKDGTAEDTYTVPATEGVEYLLGDAVVEAGAHPGTGTVTVRARAKADYVLAEGATAEWSATFKATPYSVTPAAVVFVDKDGTAEDTYTVPATEGVEYLLGDAVVEAGAHPGTGTVTVRARAKADYVLAEGATAEWSTTFKATPYSVTPAAVVFVDKDGTAEDTYTVPATGGVEYLLDEAVVEAGTHPGSGTVTVKARAKTDYVLAEGATAEWSATFKATPYAVTPAAVVFVDKDGTAEDTYAVPSMEGIEYLLGDTVVEAGTHQGSGTVTVRARAKTDFVLAEGATAEWSFTFKATPYLATPAAVVFVDKDGTAEDTYTVPATEGVEYLLGDNTVEAGTYPGSGTVTVKARAKADYVLAEGVTAEWSVTFKATPYSVTPAAAVFTDKDGTAEDTYRVPTTVGVEYLVAGILTGAGDYPGTGTVTVTARAKPDYVFAEAAIAEWSTTFKATPYSVTPAAVVFSDRDGTADDTYTVPSTEGVDYLVGGNVVTAGTHPGTGTVTVTARAKADYIRAEGAAAEWTATFKTTAAAYEPPAVSPFADVSTGQQFYKEMAWLAERKISTGWTEADGSRSYRALQPISRDAMAAFLYRMAGSPDYTPPAVSPFADVLTGQQFYKEMAWLAEQRISTGWTEADGSRTYRPLQPISRDAMAAFLYRMAGSPQYTPPAVSPFADVSTGQQFYKEMSWLAENGISTGWTEAGGARSYRPLQPISRDAMAAFLFRLDGLIH
>NC_008541.1|WP_011693012.1|3578700_3579270_-|hypothetical-protein
MFEGVPDEDAWRNCTTLEGACELTARWLEGTLSYVPGYAAPQYAGENGPMSEALAAINRLGFLTDDSQPGAEMSGGHGQRAFVTGRCTEQSAAIISAVLVETDLVVLVFPPGESGTGQICVTLDGAREFTWLGSSGGPSYAHETYTDWTNETLAKSLAECWELQIFDPVWGRNTKLVPLLQKALITAKG
>NC_008541.1|WP_011693011.1|3578128_3578671_+|hypothetical-protein
MRNRTKTGLMSMAAAAVLAVGMAPGTAVAHEGSGHGGGSDKSDDWKSSSEQRRLVKTLRNVTDDYRWLDNAIEDGYKKITECIDKPGVGAMGFHYAKESLIDDKTQARKPEILVYMPNERGRMKLVAVEFLSTAAERPELAGVDFDDGPFPGTFALHAWVWKDNPDGMFAAYNPAHSCPK
>NC_008541.1|WP_011693021.1|3597001_3598114_-|alpha-ketoacid-dehydrogenase-subunit-beta
MSPTVTTSSEVNGNVSAATARAAAKAAATAESTGPQTITLAKALNTAMADAMHADPSVLVFGEDVGMLGGVFRITDGLTKTFGESRCFDTPLAESGIVGMAVGMAMNGMRPVIEMQFDAFAYPAFEQIVSHVAKMHNRTKGAVKLPMVIRVPYAGGIGGVEHHCDSSESYYAHTAGLKVFTPATVADGYRMLREAIDSDDPVMFMEPKKLYWSKDLVDLDGLRAEHAANTERGTSSEGRAVVARPGTDATLIAYGPSVPTALAAAAAAAEEGRSLEVIDVRSIVPFDDETVCASVRKTGRAVVIAEAHGFASVSSEIVARVQERCFHYLAAPIRRVTGFDVPYPAPKLEHYYLPGVDRILDAVDDLQWED
>NC_008541.1|WP_011693022.1|3598110_3599334_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MTISADHTALGQDAPEQPAGNHVTEDAAAEAVRKFGITVEDYMLPARHQIQMVDQDGTLNPHTEQGAQPGHEYSLPGDAELLAAYEQLVVGRRVNDQNSALVRQGRMAVYPSSHGQEACQVAAALCLADGDWIFPTYRDSVAVMARGVDPVQTMTLFRGDWHSGYDPLKHKVGIQCTPLTTQLLHAVGVAHAAKLRGEDTVVLAMCGDGATSEGDFHEALNFAAVFHLPVIFFVQNNQYAISVPLAHQSVAPSLAHKAVGYGMAGERVDGNDVVALLAVLGRAVKLAREGSGPLLVEAHTYRMQAHTNADDATRYRQDSEVAQWVAKDPLKRMQTYLTARGLLDDDGAARIADKAEAVATQLREGLGEDVPVDPQDLFRYVFSTPTPQLKEQSAMLADEISRDGAAK
>NC_008541.1|WP_011693023.1|3599493_3599958_+|Lrp/AsnC-family-transcriptional-regulator
MAETEADQVPVPLDDVDRNIIAELTRDGRMSVTQVAENVHISRAHAYTRIARLTGEGVLTKFTALVDPIKAGLKSSAYVTLKVRQHSWRELRELLRAIPEVHHIALVGGDFDVILLVRAVDNVDLRRVIFDQLQSMPGVLDTQTFLVFEDVDTR
>NC_008541.1|WP_011693024.1|3600393_3601905_+|polysaccharide-biosynthesis-tyrosine-autokinase
MDLHDSLRILRRNWILIVAATLAGLLMSGGASVLTKPTYRADTQLFVAIQSSGSVQELQQGNTFSQARVQSYVKTVASPIVLQPVIDTLGLPSTAEELAGRVKASTDLNTVLINISVEDNSPVQAAATAQAVADSLIRVVDTLEKPKTGGTSPVSLSITKPAKAPSVPSAPDTRLNLMVGLLLGLAAGVGAALLRTSLDNRIRGEADLRRVTELPLLGGISFDQDATRKPLLTQTAAQSPRSESFRQLRTNLQFANVSGRASTVVVTSSLPGEGKSTTATNLAISLAQAGQKVCLIDADLRRPMINEYLGLDRSAGLTTALVGLADVSDLLQPWGDDSLYVLASGQIPPNPSELLGSDEMKQLITRLEDAFDTVVIDAPPLLPVTDAAVLSQHVGGVVVVVGSQKLRQNDLEKSLGALNMVGANVLGIVLNRLPVKGPDSYAYTYYSHDGATATAKRPKANAQERGQQTNAGEPDLHYGDFDRQILETQSQPAHVFPRTSAER
>NC_008541.1|WP_156810690.1|3602797_3602935_+|hypothetical-protein
MAPEFAFRSSVRLPWDYYVRVFSNAYSVDPGAIGRIVNVEADLER
>NC_008541.1|WP_156810691.1|3602931_3603165_+|hypothetical-protein
MTVSADGRCWPGTSGNGPGTRSSPTPGTWTRPSLRRIHRSLKTGRSWVVEERDLAVYDELFGVAIPDDARELSGAGR
>NC_008541.1|WP_011693026.1|3604143_3605082_-|glycosyltransferase-family-2-protein
MEYGKSMDSSNKINGPKNRISVWIVNYNSSQYLDRCLSSLMHEPVDEVIILDNGSQENEVIAAHEIVSKFENARFVKMETNLGFGGGMNAISRIPNFEPDGIIWLLNPDCEVETGATSKLMEALDSYDIVSPLITSGVSTDRKVWFAGGVIEPAKGACSHVGYGVSISEFSETLALPSSFLSGASLMMKRSTWDVLGGFREDLFLYWEDADLCLRASALQMKLGIIPQAQVWHREGGSSVNDGSLRSKTYYYYIARNRIIVCSTLAAKYDIVFFRGIFESLKLIARPLIRERSGRMGKFLAAAKGTIDGIMA
>NC_008541.1|WP_156810692.1|3605091_3606249_-|hypothetical-protein
MGAIYSYGVLVTLLTLPFLASELLGESPINKSIKFMVSVGVWMLLLVSGAILSRLVPKAIQLGCAIALAGMTIGAILYHGGFPLVDQIDLLHSYPNFQQRVRSTRFEASSLGSGMIVCLGLIAIHSPRKLAVIGFSLGLVLIGQISESRGTTLTVFVTLLAVPFAIWMQLRKAGLATVTTRFYSSGIGVLAIILSFRLDYFLGSPLWSALGLKTEGTSDASRSMWADASLSALAQYPFGMGYAAYLAWLPKLIENSTLSAVGQFSLRDLSEMINQSRAVSDATLSPKNLVGIAAVHLGVIGVLVVVALYSAVIKNAISSASVGFGSRFVVGISLIVVSSTYYTSVFSMDQAFLFGALAWGSGQLAQEPNVAGLKVLSPAVEQRKM
>NC_008541.1|WP_011693028.1|3606529_3607705_-|glycosyltransferase-family-4-protein
MHVIVVTDDVLYPTNSGGRSALLGECEALVAAGCELTLVVSHRNKLSAHEVSQHEKLASRVVFIQRSGFAATTMAHPLRPFQMQSRKTVLREMALGLGREDTVGVIASHEWTIPLAKSIAGPLGLRVALRSHNDEVAYMQALARSASGLRRAYCWAEAVRLRIMLKELYRDIAAVAVLSEGDSDSYRPFGLTPTFVPAVLFRDHDANGSAANIPPESARLLFVGALDMPQAVEGLKWFCSRVLPLVRAAVPHAELHVAGRRPNREIAQLLSAMDGVEFHGEVSSLEPLYAATRIFVNPVFSGSGVNMKVGPPAVRGIPVVTTTTGARGLSHLAPGFVIADDEEEFAAGCIRLLEDNDMWSQKSGDLSTRAGLISSPSIARGLLELFDETRV
>NC_008541.1|WP_011693029.1|3607781_3609044_-|hypothetical-protein
MGNATKSNWQGLLPVRIAFFTLGPLFSIIVPILTLPAISTNFGHSGWASIAVGQSLGIAAAIVIELGWTVAGPLQVARADHNGQASAFRRSLLERGCVSLLSLPVVGVLIQLVNPDYDLEAFLTATAMALGGMSAAWFYVGTGASLKMLLMDSLPRVATSVGGAVMLMNGAPLIALPLTQLTASVFLPFVPLFWLPRVQRQDKSLGLRSELAFTWKAQGAAFVTRVASSAYVALPTALMASVAPVAQVASYAAVDRVGRTALAALSPFNLALQGWIPAADGHERRRRMYIALWLSSVLAILSFIAFWLLAPWVIGFLFAGEILPDNTAIFSFSLAVGAVVLSRCTGIQCLAVLGKTWTTASSTVVGLLISVPMVLVLGAAYGAVGVAWAIATTELSVLGVQVVALLAMAKSRRSIQRKKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008541_1	1.1\|135306\|27\|NC_008541\|CRISPRCasFinder	135306-135332	27	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	532682-532708	4	0.852

1. spacer 1.1|135306|27|NC_008541|CRISPRCasFinder matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 4, identity: 0.852

cagccggggtatggccaaccggaatac	CRISPR spacer
cagctggggtagggccaaccggagcac	Protospacer
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Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage