CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	1 crisprs	cas2,cas1,cas8e,cas5,cas7,cse2gr11,cas6e,cas3	65	0
NC_006370	Photobacterium profundum SS9 chromosome 1, complete sequence	2 crisprs	cas3,csa3,DinG,csx1,DEDDh,WYL	1	10
NC_006371	Photobacterium profundum SS9 chromosome 2, complete sequence	1 crisprs	DEDDh,cas3,RT,DinG,csa3,cas2,cas6f,cas5,cas7f,cas3f,cas1	12	13

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_005871_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005871_1

39353-43288

TypeI-E

Consensus_repeat	Method
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CRISPRCasFinder
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CRT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	PILER-CR
CGGTTCAGCCCCGTGAGTACGGGGAACAC	PILER-CR

64 spacers

cas2,cas1,cas8e,cas5,cas7,cse2gr11,cas6e,cas3

The CRISPR arrays of NC_005871_1

>merge|NC_005871|1|39353-43288|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CGGTACATCCCCGTGAGTACGGGGAACACTTGTGGGATATTTAACGGAAGCTAAAGTGGATGCGGTTCAGCCCCGTGAGTACGGGGAACACTTAATGAATCTAAGTGAAGCCGTTAACGTTATCGGTTCAGCCCCGTGAGTACGGGGAACACTTAATGGGTGCAGTGGGTACGGGTGACAACTTCGGTTCAGCCCCGTGAGTACGGGGAACACAGCAACAACAGGCTTTCGGTTCGAACCTCAACCGGTTCAGCCCCGTGAGTACGGGGAACACCGATACGTTAGAGTTCATCGCTAGAATGAACCCGGTTCAGCCCCGTGAGTACGGGGAACACACAAAAAGCTATCTGGTGCTGTAGTTCTATATCGGTTCAGCCCCGTGAGTACGGGGAACACAGGTTCAAGGGACAACGGCCCAACTGTTACAACGGTTCAGCCCCGTGAGTACGGGGAACACTTCGAGGGCGCACATTCAATTAAACGGGTGTGCGGTTCAGCCCCGTGAGTACGGGGAACACTTTCCCATCCTCGCGCTTTCTATTTTTGGAACACGGTTCAGCCCCGTGAGTACGGGGAACACATCAGTGATCTTAATGCTACAGCTTGATTCAACGGTTCAGCCCCGTGAGTACGGGGAACACACGTTGTGCCATTTATCTCGCTAATCTCACCGCGGTTCAGCCCCGTGAGTACGGGGAACACGTAGCAAGCTGAGTCAGTAAGATAGATACCATCCGGTTCAGCCCCGTGAGTACGGGGAACACGTTGATGAAACAAACCGACCTGATTCAACCGACGGTTCAGCCCCGTGAGTACGGGGAACACTACACCAAAAGCCCCATCAGGCACGCCGGAAGCGGTTCAGCCCCGTGAGTACGGGGAACACACCTTACCGATCACTTTAATGATGACCGCATTCGGTTCAGCCCCGTGAGTACGGGGAACACTACATACGTTGGGTTGTGAACATGTGATTCTCCGGTTCAGCCCCGTGAGTACGGGGAACACATATTTATCCGAAACTTACCCTTTCCTATATCCGGTTCAGCCCCGTGAGTACGGGGAACACTATCAGGGTATTGCTCTTTGAACTCGTCAATGCGGTTCAGCCCCGTGAGTACGGGGAACACATGGCTATGAAAACTCAAATAGCAATATGTTACGGTTCAGCCCCGTGAGTACGGGGAACACTCCATACAGAACGCCGTGGAAAACCGTGTGCGCGGTTCAGCCCCGTGAGTACGGGGAACACAAAGAAGGTAGTTCTGAAATTGCGGATACCACCGGTTCAGCCCCGTGAGTACGGGGAACACTTGTTCAACTCGTCGATGATGTCCGGCATGTCCGGTTCAGCCCCGTGAGTACGGGGAACACTCTTCATCAGTACCGTTCGGAATATTCCCGTACGGTTCAGCCCCGTGAGTACGGGGAACACGCTAGGCCTAGAACGCTTCGGATACCTGTTAACGGTTCAGCCCCGTGAGTACGGGGAACACTTTCTCGTGGTCAACTCTTACATGGAACATTGCGGTTCAGCCCCGTGAGTACGGGGAACACCTCTACCTGAGTTTCCTTTTTATTCTCAGCATCGGTTCAGCCCCGTGAGTACGGGGAACACCTGGCATCGATAAGCGTGACCGCGATGCGGAACGGTTCAGCCCCGTGAGTACGGGGAACACCGTTGACAGTCTAGCGTTCATCTCATTCATTACGGTTCAGCCCCGTGAGTACGGGGAACACGCCGTCCATGCAGTAACCGTCCTGAGAGAACGCGGTTCAGCCCCGTGAGTACGGGGAACACGATTTACTAGTTACGCTAATTCTAATTAGTGGCGGTTCAGCCCCGTGAGTACGGGGAACACATTTGAACGTTACCTGGTGGTGTTTTCTCGCCCGGTTCAGCCCCGTGAGTACGGGGAACACTCAGGTAGTGCATTCAAGGTAAATGATGGTGACGGTTCAGCCCCGTGAGTACGGGGAACACACCGCCTGAAAGCCACGAAGGTTACAAGGTAACGGTTCAGCCCCGTGAGTACGGGGAACACAAAAAGAGGTATAAAGTCAAACCCCTCACCCTCGGTTCAGCCCCGTGAGTACGGGGAACACATGCTTGGGTGATCTCAACATGATTTTGCCGTCGGTTCAGCCCCGTGAGTACGGGGAACACTGTATCTCCCAATTGGGCACTAACCTTCGAGTCGGTTCAGCCCCGTGAGTACGGGGAACACTTTAACAGCGTGTCCCATTGGTATTTCATAACCGGTTCAGCCCCGTGAGTACGGGGAACACATTCAGCCTCATTTTTGTCATTGTCCTAGCTCCGGTTCAGCCCCGTGAGTACGGGGAACACGCGATAAATGCCAGCATCCATTTTTTTGCATGCGGTTCAGCCCCGTGAGTACGGGGAACACATCTCATTATCTGGCCACAGAAAACCAAGATGCGGTTCAGCCCCGTGAGTACGGGGAACACACTTTCATAACATCAAATAACTGGAGTAAGACCGGTTCAGCCCCGTGAGTACGGGGAACACCACACAATTGCAGTCTTCACAGAATGGCTTTACGGTTCAGCCCCGTGAGTACGGGGAACACTGTATCGAAATGATGCACAACCAGTACGTCACCGGTTCAGCCCCGTGAGTACGGGGAACACCATTGCATGTGCGTAATCGTCAACTTTGATTGCGGTTCAGCCCCGTGAGTACGGGGAACACGCAGCAATGAGTTTTATTGGTGAGTCGAGAGACGGTTCAGCCCCGTGAGTACGGGGAACACCGGGAACAGTTACGCCCCGCGTTGGCTGATTACGGTTCAGCCCCGTGAGTACGGGGAACACACGAACAGAAACCTGATAGTAGGCATAGTCAACGGTTCAGCCCCGTGAGTACGGGGAACACGCGTAAAACGCCCTTTGATTGTTGTTTGGTTACGGTTCAGCCCCGTGAGTACGGGGAACACGGTCGTATGCCTATGGCTTCGGTTGGTATGGACGGTTCAGCCCCGTGAGTACGGGGAACACCATCAACGATTATCGAAGATGGCGTTATCAAGCGGTTCAGCCCCGTGAGTACGGGGAACACATTCAAAGTTGATTCAGTGGAAGAACTTGTAACGGTTCAGCCCCGTGAGTACGGGGAACACCTCACCCAGTGTCACATTACATTTTTTGTATGCGGTTCAGCCCCGTGAGTACGGGGAACACCTACAAGCCCGTATGTTAGCCGGTGGGGGTGCCGGTTCAGCCCCGTGAGTACGGGGAACACGTGATGGCAAAACGTTGGGGTACCGCTCCTGGCGGTTCAGCCCCGTGAGTACGGGGAACACTTCGTCGTACCGTTGGCTCGCATGGTGCAGCTCGGTTCAGCCCCGTGAGTACGGGGAACACGTAAACGATTGCTGGCTTACTGGGCTGCTAAACGGTTCAGCCCCGTGAGTACGGGGAACACGTGGCCATGTTGCTGCCCGTTACTACAAAGAACGGTTCAGCCCCGTGAGTACGGGGAACACATTCCTACTCGCATTTGCTAAGCGATTGCTAGCGGTTCAGCCCCGTGAGTACGGGGAACACATGTGACATGCCTTGAAGGTGATGTTAATTGGCGGTTCAGCCCCGTGAGTACGGGGAACACATGAAGAGCGACAACAGCGGCTTTTGCTTTTTCGGTTCAGCCCCGTGAGTACGGGGAACACATCGCGACAAGAGCAGCGGCGATTACTGATCACGGTTCAGCCCCGTGAGTACGGGGAACACTTCTTTCATTGCTGCCTGCTCAGCCTGCTCAGCGGTTCAGCCCCGTGAGTACGGGGAACACTGTAACACAGATGTTCCACTTGTCGCCCTAGCCGGTTCAGCCCCGTGAGTACGGGGAACACAGATTGAAAAACAATACCATCAGATCCTATTACGGTTCAGCCCCGTGAGTACGGGGAACAC

>NC_005871|1|1|39353-43288|CRISPRCasFinder
CGGTACATCCCCGTGAGTACGGGGAACAC	TTGTGGGATATTTAACGGAAGCTAAAGTGGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGAATCTAAGTGAAGCCGTTAACGTTAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGGGTGCAGTGGGTACGGGTGACAACTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGCAACAACAGGCTTTCGGTTCGAACCTCAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGATACGTTAGAGTTCATCGCTAGAATGAACC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGGTTCAAGGGACAACGGCCCAACTGTTACAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGAGGGCGCACATTCAATTAAACGGGTGTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCAGTGATCTTAATGCTACAGCTTGATTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGTTGTGCCATTTATCTCGCTAATCTCACCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAGCAAGCTGAGTCAGTAAGATAGATACCATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTTGATGAAACAAACCGACCTGATTCAACCGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACACCAAAAGCCCCATCAGGCACGCCGGAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCTTACCGATCACTTTAATGATGACCGCATT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACATACGTTGGGTTGTGAACATGTGATTCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATATTTATCCGAAACTTACCCTTTCCTATATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TATCAGGGTATTGCTCTTTGAACTCGTCAATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGGCTATGAAAACTCAAATAGCAATATGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCCATACAGAACGCCGTGGAAAACCGTGTGCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAGAAGGTAGTTCTGAAATTGCGGATACCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTGTTCAACTCGTCGATGATGTCCGGCATGTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCTTCATCAGTACCGTTCGGAATATTCCCGTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCTAGGCCTAGAACGCTTCGGATACCTGTTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCTCGTGGTCAACTCTTACATGGAACATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTGGCATCGATAAGCGTGACCGCGATGCGGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGTTGACAGTCTAGCGTTCATCTCATTCATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCCGTCCATGCAGTAACCGTCCTGAGAGAACG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GATTTACTAGTTACGCTAATTCTAATTAGTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCAGGTAGTGCATTCAAGGTAAATGATGGTGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAAAGAGGTATAAAGTCAAACCCCTCACCCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGCTTGGGTGATCTCAACATGATTTTGCCGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCTCCCAATTGGGCACTAACCTTCGAGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTAACAGCGTGTCCCATTGGTATTTCATAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGATAAATGCCAGCATCCATTTTTTTGCATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCTCATTATCTGGCCACAGAAAACCAAGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACTTTCATAACATCAAATAACTGGAGTAAGAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CACACAATTGCAGTCTTCACAGAATGGCTTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCGAAATGATGCACAACCAGTACGTCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATTGCATGTGCGTAATCGTCAACTTTGATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGGGAACAGTTACGCCCCGCGTTGGCTGATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGAACAGAAACCTGATAGTAGGCATAGTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGTAAAACGCCCTTTGATTGTTGTTTGGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GGTCGTATGCCTATGGCTTCGGTTGGTATGGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATCAACGATTATCGAAGATGGCGTTATCAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCACCCAGTGTCACATTACATTTTTTGTATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGATGGCAAAACGTTGGGGTACCGCTCCTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAAACGATTGCTGGCTTACTGGGCTGCTAAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGGCCATGTTGCTGCCCGTTACTACAAAGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCCTACTCGCATTTGCTAAGCGATTGCTAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGTGACATGCCTTGAAGGTGATGTTAATTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCGCGACAAGAGCAGCGGCGATTACTGATCA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTAACACAGATGTTCCACTTGTCGCCCTAGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGATTGAAAAACAATACCATCAGATCCTATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC

>NC_005871|1|1|39353-43288|CRT
CGGTACATCCCCGTGAGTACGGGGAACAC	TTGTGGGATATTTAACGGAAGCTAAAGTGGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGAATCTAAGTGAAGCCGTTAACGTTAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGGGTGCAGTGGGTACGGGTGACAACTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGCAACAACAGGCTTTCGGTTCGAACCTCAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGATACGTTAGAGTTCATCGCTAGAATGAACC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGGTTCAAGGGACAACGGCCCAACTGTTACAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGAGGGCGCACATTCAATTAAACGGGTGTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCAGTGATCTTAATGCTACAGCTTGATTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGTTGTGCCATTTATCTCGCTAATCTCACCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAGCAAGCTGAGTCAGTAAGATAGATACCATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTTGATGAAACAAACCGACCTGATTCAACCGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACACCAAAAGCCCCATCAGGCACGCCGGAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCTTACCGATCACTTTAATGATGACCGCATT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACATACGTTGGGTTGTGAACATGTGATTCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATATTTATCCGAAACTTACCCTTTCCTATATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TATCAGGGTATTGCTCTTTGAACTCGTCAATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGGCTATGAAAACTCAAATAGCAATATGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCCATACAGAACGCCGTGGAAAACCGTGTGCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAGAAGGTAGTTCTGAAATTGCGGATACCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTGTTCAACTCGTCGATGATGTCCGGCATGTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCTTCATCAGTACCGTTCGGAATATTCCCGTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCTAGGCCTAGAACGCTTCGGATACCTGTTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCTCGTGGTCAACTCTTACATGGAACATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTGGCATCGATAAGCGTGACCGCGATGCGGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGTTGACAGTCTAGCGTTCATCTCATTCATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCCGTCCATGCAGTAACCGTCCTGAGAGAACG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GATTTACTAGTTACGCTAATTCTAATTAGTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCAGGTAGTGCATTCAAGGTAAATGATGGTGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAAAGAGGTATAAAGTCAAACCCCTCACCCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGCTTGGGTGATCTCAACATGATTTTGCCGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCTCCCAATTGGGCACTAACCTTCGAGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTAACAGCGTGTCCCATTGGTATTTCATAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGATAAATGCCAGCATCCATTTTTTTGCATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCTCATTATCTGGCCACAGAAAACCAAGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACTTTCATAACATCAAATAACTGGAGTAAGAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CACACAATTGCAGTCTTCACAGAATGGCTTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCGAAATGATGCACAACCAGTACGTCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATTGCATGTGCGTAATCGTCAACTTTGATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGGGAACAGTTACGCCCCGCGTTGGCTGATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGAACAGAAACCTGATAGTAGGCATAGTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGTAAAACGCCCTTTGATTGTTGTTTGGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GGTCGTATGCCTATGGCTTCGGTTGGTATGGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATCAACGATTATCGAAGATGGCGTTATCAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCACCCAGTGTCACATTACATTTTTTGTATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGATGGCAAAACGTTGGGGTACCGCTCCTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAAACGATTGCTGGCTTACTGGGCTGCTAAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGGCCATGTTGCTGCCCGTTACTACAAAGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCCTACTCGCATTTGCTAAGCGATTGCTAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGTGACATGCCTTGAAGGTGATGTTAATTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCGCGACAAGAGCAGCGGCGATTACTGATCA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTAACACAGATGTTCCACTTGTCGCCCTAGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGATTGAAAAACAATACCATCAGATCCTATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC

>NC_005871|1|1|39415-43288|PILER-CR
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGAATCTAAGTGAAGCCGTTAACGTTAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGGGTGCAGTGGGTACGGGTGACAACTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGCAACAACAGGCTTTCGGTTCGAACCTCAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGATACGTTAGAGTTCATCGCTAGAATGAACC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGGTTCAAGGGACAACGGCCCAACTGTTACAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGAGGGCGCACATTCAATTAAACGGGTGTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCAGTGATCTTAATGCTACAGCTTGATTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGTTGTGCCATTTATCTCGCTAATCTCACCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAGCAAGCTGAGTCAGTAAGATAGATACCATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTTGATGAAACAAACCGACCTGATTCAACCGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACACCAAAAGCCCCATCAGGCACGCCGGAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCTTACCGATCACTTTAATGATGACCGCATT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACATACGTTGGGTTGTGAACATGTGATTCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATATTTATCCGAAACTTACCCTTTCCTATATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TATCAGGGTATTGCTCTTTGAACTCGTCAATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGGCTATGAAAACTCAAATAGCAATATGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCCATACAGAACGCCGTGGAAAACCGTGTGCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAGAAGGTAGTTCTGAAATTGCGGATACCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTGTTCAACTCGTCGATGATGTCCGGCATGTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCTTCATCAGTACCGTTCGGAATATTCCCGTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCTAGGCCTAGAACGCTTCGGATACCTGTTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCTCGTGGTCAACTCTTACATGGAACATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTGGCATCGATAAGCGTGACCGCGATGCGGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGTTGACAGTCTAGCGTTCATCTCATTCATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCCGTCCATGCAGTAACCGTCCTGAGAGAACG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GATTTACTAGTTACGCTAATTCTAATTAGTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCAGGTAGTGCATTCAAGGTAAATGATGGTGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAAAGAGGTATAAAGTCAAACCCCTCACCCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGCTTGGGTGATCTCAACATGATTTTGCCGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCTCCCAATTGGGCACTAACCTTCGAGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTAACAGCGTGTCCCATTGGTATTTCATAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGATAAATGCCAGCATCCATTTTTTTGCATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCTCATTATCTGGCCACAGAAAACCAAGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACTTTCATAACATCAAATAACTGGAGTAAGAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CACACAATTGCAGTCTTCACAGAATGGCTTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCGAAATGATGCACAACCAGTACGTCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATTGCATGTGCGTAATCGTCAACTTTGATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGGGAACAGTTACGCCCCGCGTTGGCTGATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGAACAGAAACCTGATAGTAGGCATAGTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGTAAAACGCCCTTTGATTGTTGTTTGGTTACGGTTCAGCCCCGTGAGTACGGGGAACACGGTCGTATGCCTATGGCTTCGGTTGGTATGGACGGTTCAGCCCCGTGAGTACGGGGAACACCATCAACGATTATCGAAGATGGCGTTATCAAGCGGTTCAGCCCCGTGAGTACGGGGAACACATTCAAAGTTGATTCAGTGGAAGAACTTGTAACGGTTCAGCCCCGTGAGTACGGGGAACACCTCACCCAGTGTCACATTACATTTTTTGTATGCGGTTCAGCCCCGTGAGTACGGGGAACACCTACAAGCCCGTATGTTAGCCGGTGGGGGTGCCGGTTCAGCCCCGTGAGTACGGGGAACACGTGATGGCAAAACGTTGGGGTACCGCTCCTGGCGGTTCAGCCCCGTGAGTACGGGGAACACTTCGTCGTACCGTTGGCTCGCATGGTGCAGCTCGGTTCAGCCCCGTGAGTACGGGGAACACGTAAACGATTGCTGGCTTACTGGGCTGCTAAACGGTTCAGCCCCGTGAGTACGGGGAACACGTGGCCATGTTGCTGCCCGTTACTACAAAGAACGGTTCAGCCCCGTGAGTACGGGGAACACATTCCTACTCGCATTTGCTAAGCGATTGCTAGCGGTTCAGCCCCGTGAGTACGGGGAACACATGTGACATGCCTTGAAGGTGATGTTAATTGGCGGTTCAGCCCCGTGAGTACGGGGAACACATGAAGAGCGACAACAGCGGCTTTTGCTTTTTCGGTTCAGCCCCGTGAGTACGGGGAACACATCGCGACAAGAGCAGCGGCGATTACTGATCACGGTTCAGCCCCGTGAGTACGGGGAACACTTCTTTCATTGCTGCCTGCTCAGCCTGCTCAGCGGTTCAGCCCCGTGAGTACGGGGAACACTGTAACACAGATGTTCCACTTGTCGCCCTAGCCGGTTCAGCCCCGTGAGTACGGGGAACACAGATTGAAAAACAATACCATCAGATCCTATTA
	GGTCGTATGCCTATGGCTTCGGTTGGTATGGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATCAACGATTATCGAAGATGGCGTTATCAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCACCCAGTGTCACATTACATTTTTTGTATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGATGGCAAAACGTTGGGGTACCGCTCCTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAAACGATTGCTGGCTTACTGGGCTGCTAAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGGCCATGTTGCTGCCCGTTACTACAAAGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCCTACTCGCATTTGCTAAGCGATTGCTAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGTGACATGCCTTGAAGGTGATGTTAATTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCGCGACAAGAGCAGCGGCGATTACTGATCA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTAACACAGATGTTCCACTTGTCGCCCTAGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGATTGAAAAACAATACCATCAGATCCTATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC

>NC_005871|1|2|42284-43288|PILER-CR
	TTAATGAATCTAAGTGAAGCCGTTAACGTTAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTAATGGGTGCAGTGGGTACGGGTGACAACTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGCAACAACAGGCTTTCGGTTCGAACCTCAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGATACGTTAGAGTTCATCGCTAGAATGAACC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGGTTCAAGGGACAACGGCCCAACTGTTACAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGAGGGCGCACATTCAATTAAACGGGTGTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCAGTGATCTTAATGCTACAGCTTGATTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGTTGTGCCATTTATCTCGCTAATCTCACCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAGCAAGCTGAGTCAGTAAGATAGATACCATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTTGATGAAACAAACCGACCTGATTCAACCGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACACCAAAAGCCCCATCAGGCACGCCGGAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCTTACCGATCACTTTAATGATGACCGCATT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TACATACGTTGGGTTGTGAACATGTGATTCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATATTTATCCGAAACTTACCCTTTCCTATATC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TATCAGGGTATTGCTCTTTGAACTCGTCAATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGGCTATGAAAACTCAAATAGCAATATGTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCCATACAGAACGCCGTGGAAAACCGTGTGCG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAGAAGGTAGTTCTGAAATTGCGGATACCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTGTTCAACTCGTCGATGATGTCCGGCATGTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCTTCATCAGTACCGTTCGGAATATTCCCGTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCTAGGCCTAGAACGCTTCGGATACCTGTTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTCTCGTGGTCAACTCTTACATGGAACATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTGGCATCGATAAGCGTGACCGCGATGCGGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGTTGACAGTCTAGCGTTCATCTCATTCATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCCGTCCATGCAGTAACCGTCCTGAGAGAACG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GATTTACTAGTTACGCTAATTCTAATTAGTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TCAGGTAGTGCATTCAAGGTAAATGATGGTGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AAAAAGAGGTATAAAGTCAAACCCCTCACCCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGCTTGGGTGATCTCAACATGATTTTGCCGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCTCCCAATTGGGCACTAACCTTCGAGT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTTAACAGCGTGTCCCATTGGTATTTCATAAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGATAAATGCCAGCATCCATTTTTTTGCATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCTCATTATCTGGCCACAGAAAACCAAGATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACTTTCATAACATCAAATAACTGGAGTAAGAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CACACAATTGCAGTCTTCACAGAATGGCTTTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTATCGAAATGATGCACAACCAGTACGTCAC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATTGCATGTGCGTAATCGTCAACTTTGATTG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CGGGAACAGTTACGCCCCGCGTTGGCTGATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ACGAACAGAAACCTGATAGTAGGCATAGTCAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GCGTAAAACGCCCTTTGATTGTTGTTTGGTTACGGTTCAGCCCCGTGAGTACGGGGAACACGGTCGTATGCCTATGGCTTCGGTTGGTATGGACGGTTCAGCCCCGTGAGTACGGGGAACACCATCAACGATTATCGAAGATGGCGTTATCAAGCGGTTCAGCCCCGTGAGTACGGGGAACACATTCAAAGTTGATTCAGTGGAAGAACTTGTAACGGTTCAGCCCCGTGAGTACGGGGAACACCTCACCCAGTGTCACATTACATTTTTTGTATGCGGTTCAGCCCCGTGAGTACGGGGAACACCTACAAGCCCGTATGTTAGCCGGTGGGGGTGCCGGTTCAGCCCCGTGAGTACGGGGAACACGTGATGGCAAAACGTTGGGGTACCGCTCCTGGCGGTTCAGCCCCGTGAGTACGGGGAACACTTCGTCGTACCGTTGGCTCGCATGGTGCAGCTCGGTTCAGCCCCGTGAGTACGGGGAACACGTAAACGATTGCTGGCTTACTGGGCTGCTAAACGGTTCAGCCCCGTGAGTACGGGGAACACGTGGCCATGTTGCTGCCCGTTACTACAAAGAACGGTTCAGCCCCGTGAGTACGGGGAACACATTCCTACTCGCATTTGCTAAGCGATTGCTAGCGGTTCAGCCCCGTGAGTACGGGGAACACATGTGACATGCCTTGAAGGTGATGTTAATTGGCGGTTCAGCCCCGTGAGTACGGGGAACACATGAAGAGCGACAACAGCGGCTTTTGCTTTTTCGGTTCAGCCCCGTGAGTACGGGGAACACATCGCGACAAGAGCAGCGGCGATTACTGATCACGGTTCAGCCCCGTGAGTACGGGGAACACTTCTTTCATTGCTGCCTGCTCAGCCTGCTCAGCGGTTCAGCCCCGTGAGTACGGGGAACACTGTAACACAGATGTTCCACTTGTCGCCCTAGCCGGTTCAGCCCCGTGAGTACGGGGAACACAGATTGAAAAACAATACCATCAGATCCTATTA
	GGTCGTATGCCTATGGCTTCGGTTGGTATGGA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CATCAACGATTATCGAAGATGGCGTTATCAAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTCACCCAGTGTCACATTACATTTTTTGTATG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGATGGCAAAACGTTGGGGTACCGCTCCTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTAAACGATTGCTGGCTTACTGGGCTGCTAAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	GTGGCCATGTTGCTGCCCGTTACTACAAAGAA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATTCCTACTCGCATTTGCTAAGCGATTGCTAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGTGACATGCCTTGAAGGTGATGTTAATTGG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT
CGGTTCAGCCCCGTGAGTACGGGGAACAC	ATCGCGACAAGAGCAGCGGCGATTACTGATCA
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG
CGGTTCAGCCCCGTGAGTACGGGGAACAC	TGTAACACAGATGTTCCACTTGTCGCCCTAGC
CGGTTCAGCCCCGTGAGTACGGGGAACAC	AGATTGAAAAACAATACCATCAGATCCTATTA
CGGTTCAGCCCCGTGAGTACGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_005871.1\|WP_011176765.1\|38486_39068_-\|DUF2913-family-protein	unknown	unknown	gnl\|CDD\|371392
NC_005871.1\|WP_011176760.1\|33556_34747_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_005871.1\|WP_041396071.1\|53601_53829_+\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_157134489.1\|46077_46713_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NC_005871.1\|WP_041396068.1\|31511_31706_-\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_041396069.1\|37790_38273_-\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_049789069.1\|44618_46091_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|236613
NC_005871.1\|WP_081470456.1\|36894_37692_-\|endonuclease	unknown	unknown	gnl\|CDD\|185091
NC_005871.1\|WP_157134486.1\|31698_31866_-\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_011176768.1\|43682_44603_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_005871.1\|WP_011176767.1\|43365_43674_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_005871.1\|WP_041396070.1\|48250_48796_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_005871.1\|WP_011176776.1\|51937_52891_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NC_005871.1\|WP_011176772.1\|47818_48235_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NC_005871.1\|WP_011176771.1\|46752_47778_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_005871.1\|WP_157134485.1\|30908_31343_-\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_011176761.1\|34749_35835_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|370113
NC_005871.1\|WP_011176759.1\|31937_32915_-\|DUF1738-domain-containing-protein	unknown	unknown	gnl\|CDD\|226680
NC_005871.1\|WP_011176762.1\|36431_36779_-\|hypothetical-protein	unknown	unknown	unknown
NC_005871.1\|WP_157134487.1\|48840_51273_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
NC_005871.1\|WP_011176765.1\|38486_39068_-\|DUF2913-family-protein	gnl\|CDD\|371392	pfam11140, DUF2913, Protein of unknown function (DUF2913). This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.	1.28172e-50
NC_005871.1\|WP_011176760.1\|33556_34747_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	7.25257e-30
NC_005871.1\|WP_041396070.1\|48250_48796_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.07309e-58
NC_005871.1\|WP_011176776.1\|51937_52891_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.86247e-14
NC_005871.1\|WP_011176761.1\|34749_35835_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	3.42094e-45
NC_005871.1\|WP_049789069.1\|44618_46091_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NC_005871.1\|WP_081470456.1\|36894_37692_-\|endonuclease	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	1.92926e-55
NC_005871.1\|WP_011176768.1\|43682_44603_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.69096e-149
NC_005871.1\|WP_011176767.1\|43365_43674_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.98467e-61
NC_005871.1\|WP_011176772.1\|47818_48235_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.30918e-31
NC_005871.1\|WP_011176771.1\|46752_47778_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	7.63464e-105
NC_005871.1\|WP_157134489.1\|46077_46713_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.35081e-49
NC_005871.1\|WP_011176759.1\|31937_32915_-\|DUF1738-domain-containing-protein	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	9.9112e-103
NC_005871.1\|WP_157134487.1\|48840_51273_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0

>NC_005871.1|WP_011176765.1|38486_39068_-|DUF2913-family-protein
MSKEKYHQQLSDVIENSLLHLYGQVASNDRFVPLARRNDIVCKFLKPKLKQPCYKSIKGDIKRMILVGQRKDGDLEAKLNELHSMSVDFQKKANDAQKLFDLLSILLSKHGFDSKIFDESAQAEPEVIYVLQDHLENCFEDNGTQIAPVSMLIESDRSLELIEFINATQLFSAELKESDSNNQQSHILLHPVK
>NC_005871.1|WP_041396069.1|37790_38273_-|hypothetical-protein
MTQRALEQDKWLHAGLMGFSAAFFLALFSAQGGVEESIMLHLSVLLFSIALPLFTIFTILCMSLMNPNLPKGMFDTLQNSRWLFYARALSYASIYLAVMFLIGHFTLLAMFTFFIISAAIWWKLRGLILPDLERLQQEKQDSGIKTSPVAQAVRQAIDER
>NC_005871.1|WP_081470456.1|36894_37692_-|endonuclease
MARVQHYRLEGSPSFTSHINKVRKSIVKRILFIVGLLLAFNATAANLHIESFSKAKKTLEKNVYFDHRTTLYCGASFDTKKNITPPPGFKSDKYVKRSKKVEWEHVVPAENFGRTFIEWRDGDTQCVNNKGKAYKGRRCANKASKEYRLMQSDLYNLFPAIGSVNAARSNYNFTMLPAEPADFGSCQVKIDNRKAEPPIAARGRIARTYLYMEQSYSRYRMSKSQRQLMAAWDKQFPVSAWECKRAERIEKLQGNVNNVLKTRCH
>NC_005871.1|WP_011176762.1|36431_36779_-|hypothetical-protein
MPFPPPTHGHEESSIGETLMDHLVSKPSATRIVALDRDFDRLHLEKGDHLVIEQGRNPHDGCTAMMELDGDIFCAQLYWQKGQWYAATDDRRGIVTEDMLLLGVATRAIKNQIID
>NC_005871.1|WP_011176761.1|34749_35835_+|ParB/RepB/Spo0J-family-partition-protein
MARKKGSNNEGTFGQPINPQSQTKSALRTALDNVDNFSEEQRQQLSSALGLQVESKPEVWELKSGAKATFTSVLLTRKQVEEETFVSFEVNGRDQELLTDESLKSLSSMANQQFYPAIGRKINGKLEILDGSRRRATFLRTESIELFKVLLTDDDVSVGDAKALAKDLQTAEAHNLYEIGQRCLILKGQDEKVTQKEMAEQLGISQSSISRAIKAANIDKELIIFFPNANNLTRKDYELLEKVTHQFAGMPSAMSDFIIDVTNEHNQSNFELSVDEQHDELIKLITSKLADQKKAVKKDTGRKVLPIAEFTESGVFARKVKKNRFFGYEFGRIPNDVQDKLDSAIQAIICEYQNTDSAKQD
>NC_005871.1|WP_011176760.1|33556_34747_+|ParA-family-protein
MDNQETYKAFEALRQGAENYIVRRNNAYKKEVRYFTRIEASNYLSVDGKTVDKYVKMAGIDPNRHEDAAWLIDINEMYQVRELLPLDKRIEHKFTRPKNHKLQVIVVQNQKGGVGKTISAATIASGLATEFHEEFRVGVIDLDPQNTLSTYYAPIVEGEENQWLSVGDLMAGKFEMEEDETFSNVVSESFLQTTIPNLRILPATQDDRSLENWFHRQLHNQSLDKPYHLLKNIIDAVENEFDIIIIDTPPSMGFATINGYFAATSVIFPMQVAENDIDATCNYFKFIPELWELIDDHGHTGYDFMKILLTNHKTSSSTTTLQNKLSNVFGSFIYSREFNNSEAIKECSRLVSTLFDISKSEYPGRTKSVFQKAKDNAYEVTSQVYRNIVDVWDKDN
>NC_005871.1|WP_011176759.1|31937_32915_-|DUF1738-domain-containing-protein
MTHSTVINSTITKQHQATSVSPLEQSGSNKNVSSKRKPRRVAKVAKDMYQIVTDRIIQSLEKGVKPWVCPWDRTQECTLLPMNFKTKHQYSGVNILLLWSEIVEKGYSSPYWLTYKQAAELGGNVIKGQKGTAIIFYKMLEKDNDKGEKDTIPMLKSFTVFNLDQIENIDKPSVTVSEARTVQGDFVTLDHVEAAMVETGATISHLGVRAFYSPSHDAITLPTKDRFASSNDYYATAMHELTHWSGHKSRLDRDLKNSFGSKDYAFEELVAELGAAFCCADLSVFGEVQHEDYIAGWLKKLNDDKRFIFKAASLASKAHAFLLNK
>NC_005871.1|WP_157134486.1|31698_31866_-|hypothetical-protein
MITANHNRQTCINRKQKIVLASTLLIPLHCKTRSWLDFQLFCSELQRVVGGDYHG
>NC_005871.1|WP_041396068.1|31511_31706_-|hypothetical-protein
MANNNRSPITETQFDSVAMKTQPGQLKQRNREYGIEFSIWINHTLVMSSDVDKEGVRQYWCYLS
>NC_005871.1|WP_157134485.1|30908_31343_-|hypothetical-protein
MNTVSLINAMHTLRCSHRQVNGLLLAKKKINKQLTMSRQYTALCERDKVQLRAMGFSQRVCDRVGDQRFYHYSDLQLLEESLNTATELPWSITLFNGGAWINTRFNRLVPALVFHITSSGKYKLSLFSLNINRGDNSVIMDRYY
>NC_005871.1|WP_011176767.1|43365_43674_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMCVVVTEAVPPRLRGRLAVWLLEIRAGVYVGDVSRRIREMIWFQVDKLAEQGNVVMAWATNTESGFDFVTYGENARMPVDLEGLRLVKFTSQEIDKKPKN
>NC_005871.1|WP_011176768.1|43682_44603_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSFVPLKPIPIKDRNSMIFIGKGRIDVKDGAFVVIDEVNGERMHIPVGSVVCIMLEPGTRISHAAVKLAATTGTLLIWVGEAGVRLYSVGQPGGARSDKLLYQAKLALDETLRLKVVRKMFELRFGEPAPERRSVDQLRGIEGARVRKIYQMLAKQYGIEWHGRRYDPKDWEKGDVINQCISAATSCLYGVTEAAILAAGYAPAIGFLHSGKPLSFVYDIADVIKFETVVPVAFLVASKKPNTPDRQVRIACREAFRKDRTLKRLIPLIEDILNAGEISPPIPYEDAQPPALPEPESIGDEGHRTG
>NC_005871.1|WP_049789069.1|44618_46091_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLKDPFISTTQGKVSLKTILTSEHDYQLQYYFDETQLAMLQLLASLTTVLLKPTVVELKSYLQHGVTEQQYDEAIEKIATKWFEDDCFMQSTFPVEAKIADGPITKLISGIECGGSANALGLFSEVEQADAVCADCVHVLNYNLHMNIKGECFGPTGATGIRGGGAITTLVAGKNVKTTVLANTVAIDFFETFANLDEGAESRYMWDLPPSGDVYFAQKIGLERGLFALAYHINFPIEDKKCVCDVCGYSSEYTVTTFQRVKYTGSYGSTKNGRDAHAGWWLHPYTPRTEKEDGTYAVCARNQHWQSWQELTAYVVGKEVEKASVKPALIIDQYRKLLIGRLDLLVGGNIADQGSILGRVYDLYSMPSSLSKNVGRISGVVDAGLEQKERLSISFNKLFGIGYDKKFVGGIKEQAMQRFTANAQQIIQQILLDVDRKEAQALRQGAVEKLNQDAKKIFTAVQRKYQHDLPLFKALVKGEHVLYQPSNK
>NC_005871.1|WP_157134489.1|46077_46713_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLILKTEGLSAYGLQTFDVHRRVNHFPTRSAIVGILCAALGISRDEHAKIHELSTKLTIAVQVHHTGEKMMDYHTVENFRSPLGKIQKGTKPTYREYWCDSEHSFAISADEQTIKLLIQAVKSPVFTIFQGRKCCPLTRPLLECVLEESNPSDALKHLGEKGQIFSDIQGSNHVATLQVRDLITPVARKYAIRTVYVSGRSEGEACESA
>NC_005871.1|WP_011176771.1|46752_47778_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFINIHTLISHSSSMMNRDDSGLQKTAVFGGTTRSRISSQCLKRAIRQSDIYKESVAELSIRTNKMDELLTLCIEQLPEVETSVIEDVLLNMGSKVKKEKNKETGETSRYFDAVQPYSIGAIREAINMVQSGTELKALKKIVQIPTIDVALSGRMDASCPERNVEAAMSVAHSLTTHSADIEVDWFTACDDLATQGSGHIGTTEFSSGVFYRYASIDVDLLAKNIGKSVEEVSDIINTMVRCFAQVTPSAKQKTFAAHNHADFVMVTQSNQPLSLANAFRKPILNTGEVMEHSIESLVKHYEKLVEGYELDSKAIVFDMTDVAQSKRINVVNTISDIRF
>NC_005871.1|WP_011176772.1|47818_48235_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MYQQIYQAYCRLPKGDQADLKRCNLSKLADSSAYFRVLKFSGTNDNKQTQRILYLMVAIDLTQEEDGSSVAIALLKAGVNENQIQQIIRSGDNGIEYLKRQLVRCKNIQLKSLGKLAQYWGENTRRQLLKEYILADQD
>NC_005871.1|WP_041396070.1|48250_48796_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYISMVALSVIDTYEQHQAIWELFPNSSERKRDHLFRVENINTSGQVMVLLQSASEPQSNVKATVLQSKLFDPQISQGEYYKFKLLANPTKCLSQGKKVIEIKDENEQIQWLQRKLRGANVTVTALESVLVKSRKSFTSRFVCFEGILQVDKPDQIYSVLVMGIGRKKHAGAGLLSLAKAS
>NC_005871.1|WP_157134487.1|48840_51273_-|CRISPR-associated-helicase/endonuclease-Cas3
MSSATYFKYWGKVEKDSEQADIGYHLLPYHCLDVAAVADKWLTRSNVLLKQISAHIGKTEQEARSIVLFFVLLHDFGKFDARFQNFVESIRIKLQGNEYEVESEAYSHGSFGYLHFRKVHGNNEAMKAVAGHHGYCDVSLDPFSPEAEPDADDELIELDKHAREEWVKFCLEWTGLSQIPDVGEIPMLAGLCSVSDWIGSSITNFTQEPDLDLYQYYKQILPKADAALIESGMVQVLSGAGFEFLFNGYTPRGIQTLIEQIPQQPGLTIVESDTGSGKTEFALAYASRLIENKLADGIVFGLPTQATANGLFDRIGDAAEKLFPDSTVTLAHGKSRYILKDKYLSPDENGFLHRSNKRAFLGSMSVATVDQILMGVLSIKHQFIRSFGTRKSVLILDEIHSFDAYMYGLIEQVLKGQHQAFSSVILLSATLPNTQKNKLLRPYGGSTQSDCYPLITHTSVEGETNEFTLTTGTVRKQIKAEKWCSATLLPNQQQQQQLLNWAMKGAMVGVICNTVNDAQKLYLSLQEVLPKDQGPELDIDIFHARYTFADRAKIEKSVLNVYGKNAPRKGRILIATQVVEQSLDLDFDVMVSQIAPIEFLMQRMGRLWRHDRVDSELAKRTISVNEPVFITLIPSTKASDWKTHYQGSGFVYRNIRSLYRTEQYLHEHQVLTFPDCYREAIEYVHAEQMFAEEPEALESLFNEYQDSNSASSYVAKMNANLESKPLSDVDPRCALLTREGEMTVSVVLVDEHGKLLHGGDYQEQQDRELSTVSIAKKHVRGIQDADYYCVKATVGQDIDYTELGVILPKN
>NC_005871.1|WP_011176776.1|51937_52891_-|NYN-domain-containing-protein
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVRNATLHDDVGIKYFTAEITNKAAADPNSVNDQRSYHHALYLHSENWLKTFKGSYAVDKVEYPKVEHHEAGIEKEPKDCARVKVWKLEEKQSDVNVAIEAVYDAVMDHTLEQIIFVTNDTDIVPALKKIREHNQKSLRSPIKIGLVVPSRENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGKKSSAIKPTSWFKHHQKVEEILEILTASDVLKTIPRAWRWLSEPKPEVKCLPILTSTPDQLLDCEKGIEDVLEHVKAFARYMREKNKN
>NC_005871.1|WP_041396071.1|53601_53829_+|hypothetical-protein
MKKANQKRIWTEPCYKLQAVSTLQITFGIPNRNTPSLRQAELVITFGQKFFSSIANFPNHGLARVWQPTLAKGKT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_005871_1	1.1\|39382\|33\|NC_005871\|CRISPRCasFinder,CRT	39382-39414	33	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39382-39414	0	1.0
NC_005871_1	1.2\|39444\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39444-39475	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39444-39475	0	1.0
NC_005871_1	1.3\|39505\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39505-39536	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39505-39536	0	1.0
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39566-39597	0	1.0
NC_005871_1	1.5\|39627\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39627-39658	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39627-39658	0	1.0
NC_005871_1	1.6\|39688\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39688-39719	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39688-39719	0	1.0
NC_005871_1	1.7\|39749\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39749-39780	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39749-39780	0	1.0
NC_005871_1	1.8\|39810\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39810-39841	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39810-39841	0	1.0
NC_005871_1	1.9\|39871\|33\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39871-39903	33	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39871-39903	0	1.0
NC_005871_1	1.10\|39933\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39933-39964	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39933-39964	0	1.0
NC_005871_1	1.11\|39994\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39994-40025	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	39994-40025	0	1.0
NC_005871_1	1.12\|40055\|33\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40055-40087	33	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40055-40087	0	1.0
NC_005871_1	1.13\|40117\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40117-40148	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40117-40148	0	1.0
NC_005871_1	1.14\|40178\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40178-40209	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40178-40209	0	1.0
NC_005871_1	1.15\|40239\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40239-40270	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40239-40270	0	1.0
NC_005871_1	1.16\|40300\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40300-40331	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40300-40331	0	1.0
NC_005871_1	1.17\|40361\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40361-40392	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40361-40392	0	1.0
NC_005871_1	1.18\|40422\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40422-40453	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40422-40453	0	1.0
NC_005871_1	1.19\|40483\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40483-40514	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40483-40514	0	1.0
NC_005871_1	1.20\|40544\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40544-40575	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40544-40575	0	1.0
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40605-40636	0	1.0
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40666-40697	0	1.0
NC_005871_1	1.23\|40727\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40727-40758	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40727-40758	0	1.0
NC_005871_1	1.24\|40788\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40788-40819	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40788-40819	0	1.0
NC_005871_1	1.25\|40849\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40849-40880	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40849-40880	0	1.0
NC_005871_1	1.26\|40910\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40910-40941	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40910-40941	0	1.0
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	40971-41002	0	1.0
NC_005871_1	1.28\|41032\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41032-41063	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41032-41063	0	1.0
NC_005871_1	1.29\|41093\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41093-41124	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41093-41124	0	1.0
NC_005871_1	1.30\|41154\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41154-41185	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41154-41185	0	1.0
NC_005871_1	1.31\|41215\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41215-41246	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41215-41246	0	1.0
NC_005871_1	1.32\|41276\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41276-41307	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41276-41307	0	1.0
NC_005871_1	1.33\|41337\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41337-41368	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41337-41368	0	1.0
NC_005871_1	1.34\|41398\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41398-41429	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41398-41429	0	1.0
NC_005871_1	1.35\|41459\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41459-41490	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41459-41490	0	1.0
NC_005871_1	1.36\|41520\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41520-41551	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41520-41551	0	1.0
NC_005871_1	1.37\|41581\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41581-41612	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41581-41612	0	1.0
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41642-41673	0	1.0
NC_005871_1	1.39\|41703\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41703-41734	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41703-41734	0	1.0
NC_005871_1	1.40\|41764\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41764-41795	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41764-41795	0	1.0
NC_005871_1	1.41\|41825\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41825-41856	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41825-41856	0	1.0
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41886-41917	0	1.0
NC_005871_1	1.43\|41947\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41947-41978	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	41947-41978	0	1.0
NC_005871_1	1.44\|42008\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42008-42039	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42008-42039	0	1.0
NC_005871_1	1.45\|42069\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42069-42100	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42069-42100	0	1.0
NC_005871_1	1.46\|42130\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42130-42161	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42130-42161	0	1.0
NC_005871_1	1.47\|42191\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42191-42222	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42191-42222	0	1.0
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42252-42283	0	1.0
NC_005871_1	1.49\|42313\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42313-42344	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42313-42344	0	1.0
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42374-42405	0	1.0
NC_005871_1	1.51\|42435\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42435-42466	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42435-42466	0	1.0
NC_005871_1	1.52\|42496\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42496-42527	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42496-42527	0	1.0
NC_005871_1	1.53\|42557\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42557-42588	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42557-42588	0	1.0
NC_005871_1	1.54\|42618\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42618-42649	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42618-42649	0	1.0
NC_005871_1	1.55\|42679\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42679-42710	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42679-42710	0	1.0
NC_005871_1	1.56\|42740\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42740-42771	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42740-42771	0	1.0
NC_005871_1	1.57\|42801\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42801-42832	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42801-42832	0	1.0
NC_005871_1	1.58\|42862\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42862-42893	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42862-42893	0	1.0
NC_005871_1	1.59\|42923\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42923-42954	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42923-42954	0	1.0
NC_005871_1	1.60\|42984\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42984-43015	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42984-43015	0	1.0
NC_005871_1	1.61\|43045\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43045-43076	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	43045-43076	0	1.0
NC_005871_1	1.62\|43106\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43106-43137	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	43106-43137	0	1.0
NC_005871_1	1.63\|43167\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43167-43198	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	43167-43198	0	1.0
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	43228-43259	0	1.0
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592499	Vibrio phage 1.124.O._10N.286.49.B1, partial genome	22295-22326	1	0.969
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592531	Vibrio phage 1.164.O._10N.261.51.A7, partial genome	21439-21470	1	0.969
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592541	Vibrio phage 1.174.O._10N.261.55.A8, partial genome	23400-23431	1	0.969
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	KT160311	Vibrio phage H188, complete genome	1257-1288	1	0.969
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG592561	Vibrio phage 1.191.O._10N.286.52.B4, partial genome	10262-10293	1	0.969
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592572	Vibrio phage 1.201.B._10N.286.55.F1, partial genome	23874-23905	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592472	Vibrio phage 1.100.O._10N.261.45.C3, partial genome	23068-23099	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592468	Vibrio phage 1.094.O._10N.286.55.E12, partial genome	22661-22692	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592461	Vibrio phage 1.086.O._10N.222.51.F8, partial genome	22312-22343	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592592	Vibrio phage 1.225.O._10N.261.48.B7, partial genome	23506-23537	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592547	Vibrio phage 1.181.O._10N.286.46.C9, partial genome	23920-23951	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592451	Vibrio phage 1.075.O._10N.286.55.B10, partial genome	22756-22787	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592542	Vibrio phage 1.175.O._10N.261.55.B3, partial genome	22358-22389	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592526	Vibrio phage 1.158.O._10N.261.45.E12, partial genome	21950-21981	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592467	Vibrio phage 1.093.O._10N.286.55.E10, partial genome	22763-22794	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592561	Vibrio phage 1.191.O._10N.286.52.B4, partial genome	23422-23453	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592414	Vibrio phage 1.030.O._10N.222.55.F9, partial genome	22015-22046	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592392	Vibrio phage 1.005.O._10N.286.48.F2, partial genome	23608-23639	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592401	Vibrio phage 1.017.O._10N.286.55.C11, partial genome	22698-22729	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592590	Vibrio phage 1.223.O._10N.261.48.A9, partial genome	22228-22259	2	0.938
NC_005871_1	1.47\|42191\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42191-42222	32	CP035920	Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence	33350-33381	2	0.938
NC_005871_1	1.47\|42191\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42191-42222	32	CP035920	Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence	39163-39194	2	0.938
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG592499	Vibrio phage 1.124.O._10N.286.49.B1, partial genome	10995-11026	2	0.938
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG592592	Vibrio phage 1.225.O._10N.261.48.B7, partial genome	11365-11396	2	0.938
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG592547	Vibrio phage 1.181.O._10N.286.46.C9, partial genome	11134-11165	2	0.938
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	MG592462	Vibrio phage 1.087.A._10N.261.45.F9, partial genome	22028-22059	3	0.906
NC_005871_1	1.43\|41947\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41947-41978	32	MG592499	Vibrio phage 1.124.O._10N.286.49.B1, partial genome	4516-4547	3	0.906
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1308519-1308550	4	0.875
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NZ_CP031397	Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence	18539-18570	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NZ_CP019854	Borreliella burgdorferi plasmid lp54, complete sequence	18382-18413	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NZ_CP019765	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence	18382-18413	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_011784	Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence	18403-18434	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NZ_CP017218	Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence	35318-35349	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_013130	Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence	18425-18456	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_013128	Borrelia burgdorferi 297 plasmid 297_lp54, complete sequence	16177-16208	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_013129	Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence	18397-18428	5	0.844
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_001857	Borreliella burgdorferi B31 plasmid lp54, complete sequence	18382-18413	5	0.844
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	KM236245	Bacillus phage Mater, complete genome	105640-105671	5	0.844
NC_005871_1	1.19\|40483\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40483-40514	32	NC_010391	Salmonella phage Fels-1, complete genome	3066-3097	6	0.812
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	100675-100706	6	0.812
NC_005871_1	1.31\|41215\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41215-41246	32	MN693047	Marine virus AFVG_25M111, complete genome	23442-23473	6	0.812
NC_005871_1	1.31\|41215\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41215-41246	32	MN693506	Marine virus AFVG_25M112, complete genome	23204-23235	6	0.812
NC_005871_1	1.35\|41459\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41459-41490	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	338983-339014	6	0.812
NC_005871_1	1.47\|42191\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42191-42222	32	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	152961-152992	6	0.812
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	AF068845	Mycobacteriophage TM4, complete genome	39554-39585	6	0.812
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	KC787101	Mycobacterium phage 33D, partial genome	8882-8913	6	0.812
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	NC_003387	Mycobacterium phage TM4, complete genome	39554-39585	6	0.812
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	JX262218	Propionibacterium phage P104A, complete genome	22692-22723	6	0.812
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_018841	Propionibacterium phage P101A, complete genome	22919-22950	6	0.812
NC_005871_1	1.62\|43106\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43106-43137	32	NZ_CP053812	Vibrio cholerae strain W6G plasmid pW6G, complete sequence	88508-88539	6	0.812
NC_005871_1	1.62\|43106\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43106-43137	32	NZ_CP053815	Vibrio cholerae strain W7G plasmid pW7G, complete sequence	44339-44370	6	0.812
NC_005871_1	1.6\|39688\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39688-39719	32	NC_041884	Acinetobacter phage vB_AbaM_ME3, complete genome	27210-27241	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	702320-702351	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	252587-252618	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	114340-114371	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP014277	Martelella sp. AD-3 plasmid unnamed2, complete sequence	29732-29763	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP039906	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623b, complete sequence	23184-23215	7	0.781
NC_005871_1	1.26\|40910\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40910-40941	32	NZ_MK134375	Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence	36900-36931	7	0.781
NC_005871_1	1.28\|41032\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41032-41063	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	51063-51094	7	0.781
NC_005871_1	1.47\|42191\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42191-42222	32	NZ_AP018048	Photobacterium damselae subsp. piscicida strain 91-197 plasmid p91-197-2	7110-7141	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG820639	Propionibacterium phage pa9-6919-4, complete genome	22950-22981	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	JX262220	Propionibacterium phage P100D, complete genome	22887-22918	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MG820638	Propionibacterium phage pa6919-4, complete genome	22950-22981	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	MF919533	Propionibacterium phage Supernova, complete genome	22661-22692	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_018849	Propionibacterium phage P105, complete genome	22553-22584	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_027628	Propionibacterium phage Lauchelly, complete genome	22907-22938	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_027389	Propionibacterium phage PHL141N00, complete genome	22852-22883	7	0.781
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	KR337652	Propionibacterium phage Stormborn, complete genome	22497-22528	7	0.781
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	MK112550	Streptomyces phage Olicious, complete genome	8791-8822	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	MG663582	Streptomyces phage HaugeAnator, complete genome	8791-8822	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	MG663586	Streptomyces phage ZooBear, complete genome	8791-8822	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	MG663584	Streptomyces phage Romero, complete genome	8784-8815	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	62991-63022	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	165058-165089	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	584354-584385	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	278140-278171	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	425879-425910	8	0.75
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	450057-450088	8	0.75
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	AP013464	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32	4377-4408	8	0.75
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	AP013750	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C51-MedDCM-OCT-S46-C76, * SEQUENCING IN PROGRESS *	31588-31619	8	0.75
NC_005871_1	1.38\|41642\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41642-41673	32	NC_015710	Simkania negevensis Z plasmid pSn, complete sequence	90888-90919	8	0.75
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	MN840487	Proteus phage 2207-N35, complete genome	5668-5699	8	0.75
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	NC_041925	Proteus phage VB_PmiS-Isfahan, complete genome	1428-1459	8	0.75
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	MG945570	UNVERIFIED: Microviridae sp. isolate 3500-1801, complete genome	3246-3277	8	0.75
NC_005871_1	1.48\|42252\|32\|NC_005871\|CRISPRCasFinder,CRT	42252-42283	32	MG575420	Proteus phage vB_PmiP_RS10pmA, complete genome	38590-38621	8	0.75
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NC_042047	Serratia phage vB_Sru_IME250, complete genome	138716-138747	8	0.75
NC_005871_1	1.50\|42374\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42374-42405	32	NZ_CP041069	Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence	60678-60709	8	0.75
NC_005871_1	1.55\|42679\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42679-42710	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	943433-943464	8	0.75
NC_005871_1	1.57\|42801\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42801-42832	32	NC_048171	Synechococcus phage S-B28, complete genome	22734-22765	8	0.75
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	983654-983685	9	0.719
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	819936-819967	9	0.719
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1643028-1643059	9	0.719
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1312445-1312476	9	0.719
NC_005871_1	1.10\|39933\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39933-39964	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	204612-204643	9	0.719
NC_005871_1	1.11\|39994\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39994-40025	32	NZ_LR134428	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19	81284-81315	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP036351	Planctomycetes bacterium K2D plasmid pK2D_1, complete sequence	1848-1879	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	691437-691468	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	114213-114244	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	139179-139210	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP026546	Cupriavidus metallidurans strain Ni-2 plasmid unnamed2	143802-143833	9	0.719
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NZ_CP009358	Vibrio tubiashii ATCC 19109 plasmid p57, complete sequence	31494-31525	9	0.719
NC_005871_1	1.51\|42435\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42435-42466	32	NC_024149	Lactoccocus phage WP-2, complete genome	17607-17638	9	0.719
NC_005871_1	1.55\|42679\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42679-42710	32	NZ_CP026518	Deinococcus sp. NW-56 plasmid unnamed2, complete sequence	347802-347833	9	0.719
NC_005871_1	1.62\|43106\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43106-43137	32	MN062703	Microbacterium phage McGalleon, complete genome	32764-32795	9	0.719
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_AP014640	Leptolyngbya boryana IAM M-101 plasmid pLBX	152428-152459	9	0.719
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	436393-436424	9	0.719
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1354106-1354137	10	0.688
NC_005871_1	1.4\|39566\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	39566-39597	32	NC_047955	Pseudomonas phage Nerthus, complete genome	4692-4723	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250021	Prevotella phage Lak-B2, complete genome	419842-419873	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250024	Prevotella phage Lak-B5, complete genome	412165-412196	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250028	Prevotella phage Lak-B9, complete genome	416585-416616	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250023	Prevotella phage Lak-B4, complete genome	419053-419084	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250025	Prevotella phage Lak-B6, complete genome	415247-415278	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250029	Prevotella phage Lak-C1, complete genome	180246-180277	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250022	Prevotella phage Lak-B3, complete genome	415338-415369	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250016	Prevotella phage Lak-A1, complete genome	221043-221074	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250019	Prevotella phage Lak-A2, complete genome	140620-140651	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250027	Prevotella phage Lak-B8, complete genome	419312-419343	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250026	Prevotella phage Lak-B7, complete genome	418348-418379	10	0.688
NC_005871_1	1.21\|40605\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40605-40636	32	MK250020	Prevotella phage Lak-B1, complete genome	416568-416599	10	0.688
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	74424-74455	10	0.688
NC_005871_1	1.22\|40666\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40666-40697	32	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	176479-176510	10	0.688
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	AP013465	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58	22680-22711	10	0.688
NC_005871_1	1.42\|41886\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	41886-41917	32	NZ_CP023312	Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence	268612-268643	10	0.688
NC_005871_1	1.60\|42984\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42984-43015	32	NZ_CP020696	Sulfitobacter sp. D7 plasmid p2SUD7, complete sequence	89646-89677	10	0.688
NC_005871_1	1.60\|42984\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	42984-43015	32	NZ_CP022422	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-7, complete sequence	68318-68349	10	0.688
NC_005871_1	1.62\|43106\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43106-43137	32	NC_017792	Deinococcus gobiensis I-0 plasmid P4, complete sequence	17269-17300	10	0.688
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_CP010187	Escherichia coli strain M6 plasmid A, complete genome	141427-141458	10	0.688
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_CP010207	Escherichia coli strain M11 plasmid A, complete sequence	87694-87725	10	0.688
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_CP010197	Escherichia coli strain M9 plasmid A, complete genome	141376-141407	10	0.688
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_CP010222	Escherichia coli strain M19 plasmid A, complete sequence	141404-141435	10	0.688
NC_005871_1	1.64\|43228\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	43228-43259	32	NZ_CP010214	Escherichia coli strain M15 plasmid A, complete sequence	139780-139811	10	0.688
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	36416-36447	11	0.656
NC_005871_1	1.27\|40971\|32\|NC_005871\|CRISPRCasFinder,CRT,PILER-CR	40971-41002	32	MF375456	Xanthomonas phage phi Xc10, complete genome	15521-15552	11	0.656
NC_005871_1	1.65\|42252\|1008\|NC_005871\|PILER-CR	42252-43259	1008	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	42252-43259	948	0.06

1. spacer 1.1|39382|33|NC_005871|CRISPRCasFinder,CRT matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtgggatatttaacggaagctaaagtggatg	CRISPR spacer
ttgtgggatatttaacggaagctaaagtggatg	Protospacer
*********************************

2. spacer 1.2|39444|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttaatgaatctaagtgaagccgttaacgttat	CRISPR spacer
ttaatgaatctaagtgaagccgttaacgttat	Protospacer
********************************

3. spacer 1.3|39505|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttaatgggtgcagtgggtacgggtgacaactt	CRISPR spacer
ttaatgggtgcagtgggtacgggtgacaactt	Protospacer
********************************

4. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
agcaacaacaggctttcggttcgaacctcaac	Protospacer
********************************

5. spacer 1.5|39627|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

cgatacgttagagttcatcgctagaatgaacc	CRISPR spacer
cgatacgttagagttcatcgctagaatgaacc	Protospacer
********************************

6. spacer 1.6|39688|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaaagctatctggtgctgtagttctatat	CRISPR spacer
acaaaaagctatctggtgctgtagttctatat	Protospacer
********************************

7. spacer 1.7|39749|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

aggttcaagggacaacggcccaactgttacaa	CRISPR spacer
aggttcaagggacaacggcccaactgttacaa	Protospacer
********************************

8. spacer 1.8|39810|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgagggcgcacattcaattaaacgggtgtg	CRISPR spacer
ttcgagggcgcacattcaattaaacgggtgtg	Protospacer
********************************

9. spacer 1.9|39871|33|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tttcccatcctcgcgctttctatttttggaaca	CRISPR spacer
tttcccatcctcgcgctttctatttttggaaca	Protospacer
*********************************

10. spacer 1.10|39933|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atcagtgatcttaatgctacagcttgattcaa	CRISPR spacer
atcagtgatcttaatgctacagcttgattcaa	Protospacer
********************************

11. spacer 1.11|39994|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

acgttgtgccatttatctcgctaatctcaccg	CRISPR spacer
acgttgtgccatttatctcgctaatctcaccg	Protospacer
********************************

12. spacer 1.12|40055|33|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gtagcaagctgagtcagtaagatagataccatc	CRISPR spacer
gtagcaagctgagtcagtaagatagataccatc	Protospacer
*********************************

13. spacer 1.13|40117|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gttgatgaaacaaaccgacctgattcaaccga	CRISPR spacer
gttgatgaaacaaaccgacctgattcaaccga	Protospacer
********************************

14. spacer 1.14|40178|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaaaagccccatcaggcacgccggaag	CRISPR spacer
tacaccaaaagccccatcaggcacgccggaag	Protospacer
********************************

15. spacer 1.15|40239|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

accttaccgatcactttaatgatgaccgcatt	CRISPR spacer
accttaccgatcactttaatgatgaccgcatt	Protospacer
********************************

16. spacer 1.16|40300|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tacatacgttgggttgtgaacatgtgattctc	CRISPR spacer
tacatacgttgggttgtgaacatgtgattctc	Protospacer
********************************

17. spacer 1.17|40361|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atatttatccgaaacttaccctttcctatatc	CRISPR spacer
atatttatccgaaacttaccctttcctatatc	Protospacer
********************************

18. spacer 1.18|40422|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tatcagggtattgctctttgaactcgtcaatg	CRISPR spacer
tatcagggtattgctctttgaactcgtcaatg	Protospacer
********************************

19. spacer 1.19|40483|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atggctatgaaaactcaaatagcaatatgtta	CRISPR spacer
atggctatgaaaactcaaatagcaatatgtta	Protospacer
********************************

20. spacer 1.20|40544|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tccatacagaacgccgtggaaaaccgtgtgcg	CRISPR spacer
tccatacagaacgccgtggaaaaccgtgtgcg	Protospacer
********************************

21. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
aaagaaggtagttctgaaattgcggataccac	Protospacer
********************************

22. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
ttgttcaactcgtcgatgatgtccggcatgtc	Protospacer
********************************

23. spacer 1.23|40727|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttcatcagtaccgttcggaatattcccgta	CRISPR spacer
tcttcatcagtaccgttcggaatattcccgta	Protospacer
********************************

24. spacer 1.24|40788|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gctaggcctagaacgcttcggatacctgttaa	CRISPR spacer
gctaggcctagaacgcttcggatacctgttaa	Protospacer
********************************

25. spacer 1.25|40849|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tttctcgtggtcaactcttacatggaacattg	CRISPR spacer
tttctcgtggtcaactcttacatggaacattg	Protospacer
********************************

26. spacer 1.26|40910|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ctctacctgagtttcctttttattctcagcat	CRISPR spacer
ctctacctgagtttcctttttattctcagcat	Protospacer
********************************

27. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ctggcatcgataagcgtgaccgcgatgcggaa	CRISPR spacer
ctggcatcgataagcgtgaccgcgatgcggaa	Protospacer
********************************

28. spacer 1.28|41032|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgacagtctagcgttcatctcattcatta	CRISPR spacer
cgttgacagtctagcgttcatctcattcatta	Protospacer
********************************

29. spacer 1.29|41093|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gccgtccatgcagtaaccgtcctgagagaacg	CRISPR spacer
gccgtccatgcagtaaccgtcctgagagaacg	Protospacer
********************************

30. spacer 1.30|41154|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gatttactagttacgctaattctaattagtgg	CRISPR spacer
gatttactagttacgctaattctaattagtgg	Protospacer
********************************

31. spacer 1.31|41215|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atttgaacgttacctggtggtgttttctcgcc	CRISPR spacer
atttgaacgttacctggtggtgttttctcgcc	Protospacer
********************************

32. spacer 1.32|41276|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tcaggtagtgcattcaaggtaaatgatggtga	CRISPR spacer
tcaggtagtgcattcaaggtaaatgatggtga	Protospacer
********************************

33. spacer 1.33|41337|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

accgcctgaaagccacgaaggttacaaggtaa	CRISPR spacer
accgcctgaaagccacgaaggttacaaggtaa	Protospacer
********************************

34. spacer 1.34|41398|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaagaggtataaagtcaaacccctcaccct	CRISPR spacer
aaaaagaggtataaagtcaaacccctcaccct	Protospacer
********************************

35. spacer 1.35|41459|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcttgggtgatctcaacatgattttgccgt	CRISPR spacer
atgcttgggtgatctcaacatgattttgccgt	Protospacer
********************************

36. spacer 1.36|41520|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatctcccaattgggcactaaccttcgagt	CRISPR spacer
tgtatctcccaattgggcactaaccttcgagt	Protospacer
********************************

37. spacer 1.37|41581|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaacagcgtgtcccattggtatttcataac	CRISPR spacer
tttaacagcgtgtcccattggtatttcataac	Protospacer
********************************

38. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

attcagcctcatttttgtcattgtcctagctc	CRISPR spacer
attcagcctcatttttgtcattgtcctagctc	Protospacer
********************************

39. spacer 1.39|41703|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgataaatgccagcatccatttttttgcatg	CRISPR spacer
gcgataaatgccagcatccatttttttgcatg	Protospacer
********************************

40. spacer 1.40|41764|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcattatctggccacagaaaaccaagatg	CRISPR spacer
atctcattatctggccacagaaaaccaagatg	Protospacer
********************************

41. spacer 1.41|41825|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

actttcataacatcaaataactggagtaagac	CRISPR spacer
actttcataacatcaaataactggagtaagac	Protospacer
********************************

42. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
cacacaattgcagtcttcacagaatggcttta	Protospacer
********************************

43. spacer 1.43|41947|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatcgaaatgatgcacaaccagtacgtcac	CRISPR spacer
tgtatcgaaatgatgcacaaccagtacgtcac	Protospacer
********************************

44. spacer 1.44|42008|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

cattgcatgtgcgtaatcgtcaactttgattg	CRISPR spacer
cattgcatgtgcgtaatcgtcaactttgattg	Protospacer
********************************

45. spacer 1.45|42069|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gcagcaatgagttttattggtgagtcgagaga	CRISPR spacer
gcagcaatgagttttattggtgagtcgagaga	Protospacer
********************************

46. spacer 1.46|42130|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

cgggaacagttacgccccgcgttggctgatta	CRISPR spacer
cgggaacagttacgccccgcgttggctgatta	Protospacer
********************************

47. spacer 1.47|42191|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

acgaacagaaacctgatagtaggcatagtcaa	CRISPR spacer
acgaacagaaacctgatagtaggcatagtcaa	Protospacer
********************************

48. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtaaaacgccctttgattgttgtttggtta	CRISPR spacer
gcgtaaaacgccctttgattgttgtttggtta	Protospacer
********************************

49. spacer 1.49|42313|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtcgtatgcctatggcttcggttggtatgga	CRISPR spacer
ggtcgtatgcctatggcttcggttggtatgga	Protospacer
********************************

50. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
catcaacgattatcgaagatggcgttatcaag	Protospacer
********************************

51. spacer 1.51|42435|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

attcaaagttgattcagtggaagaacttgtaa	CRISPR spacer
attcaaagttgattcagtggaagaacttgtaa	Protospacer
********************************

52. spacer 1.52|42496|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcacccagtgtcacattacattttttgtatg	CRISPR spacer
ctcacccagtgtcacattacattttttgtatg	Protospacer
********************************

53. spacer 1.53|42557|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ctacaagcccgtatgttagccggtgggggtgc	CRISPR spacer
ctacaagcccgtatgttagccggtgggggtgc	Protospacer
********************************

54. spacer 1.54|42618|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgatggcaaaacgttggggtaccgctcctgg	CRISPR spacer
gtgatggcaaaacgttggggtaccgctcctgg	Protospacer
********************************

55. spacer 1.55|42679|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgtcgtaccgttggctcgcatggtgcagct	CRISPR spacer
ttcgtcgtaccgttggctcgcatggtgcagct	Protospacer
********************************

56. spacer 1.56|42740|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gtaaacgattgctggcttactgggctgctaaa	CRISPR spacer
gtaaacgattgctggcttactgggctgctaaa	Protospacer
********************************

57. spacer 1.57|42801|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

gtggccatgttgctgcccgttactacaaagaa	CRISPR spacer
gtggccatgttgctgcccgttactacaaagaa	Protospacer
********************************

58. spacer 1.58|42862|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

attcctactcgcatttgctaagcgattgctag	CRISPR spacer
attcctactcgcatttgctaagcgattgctag	Protospacer
********************************

59. spacer 1.59|42923|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atgtgacatgccttgaaggtgatgttaattgg	CRISPR spacer
atgtgacatgccttgaaggtgatgttaattgg	Protospacer
********************************

60. spacer 1.60|42984|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atgaagagcgacaacagcggcttttgcttttt	CRISPR spacer
atgaagagcgacaacagcggcttttgcttttt	Protospacer
********************************

61. spacer 1.61|43045|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

atcgcgacaagagcagcggcgattactgatca	CRISPR spacer
atcgcgacaagagcagcggcgattactgatca	Protospacer
********************************

62. spacer 1.62|43106|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttctttcattgctgcctgctcagcctgctcag	CRISPR spacer
ttctttcattgctgcctgctcagcctgctcag	Protospacer
********************************

63. spacer 1.63|43167|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtaacacagatgttccacttgtcgccctagc	CRISPR spacer
tgtaacacagatgttccacttgtcgccctagc	Protospacer
********************************

64. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 0, identity: 1.0

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
agattgaaaaacaataccatcagatcctatta	Protospacer
********************************

65. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592499 (Vibrio phage 1.124.O._10N.286.49.B1, partial genome) position: , mismatch: 1, identity: 0.969

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacacaattgcagtcttcacagaatggcttta	Protospacer
.*******************************

66. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592531 (Vibrio phage 1.164.O._10N.261.51.A7, partial genome) position: , mismatch: 1, identity: 0.969

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacacaattgcagtcttcacagaatggcttta	Protospacer
.*******************************

67. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592541 (Vibrio phage 1.174.O._10N.261.55.A8, partial genome) position: , mismatch: 1, identity: 0.969

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacacaattgcagtcttcacagaatggcttta	Protospacer
.*******************************

68. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to KT160311 (Vibrio phage H188, complete genome) position: , mismatch: 1, identity: 0.969

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
cacacaattgcagtcttcacagaatggtttta	Protospacer
***************************.****

69. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592561 (Vibrio phage 1.191.O._10N.286.52.B4, partial genome) position: , mismatch: 1, identity: 0.969

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
catcaacgattatcgaagatggcgtgatcaag	Protospacer
************************* ******

70. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592572 (Vibrio phage 1.201.B._10N.286.55.F1, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

71. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592472 (Vibrio phage 1.100.O._10N.261.45.C3, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

72. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592468 (Vibrio phage 1.094.O._10N.286.55.E12, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

73. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592461 (Vibrio phage 1.086.O._10N.222.51.F8, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

74. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592592 (Vibrio phage 1.225.O._10N.261.48.B7, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

75. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592547 (Vibrio phage 1.181.O._10N.286.46.C9, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

76. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592451 (Vibrio phage 1.075.O._10N.286.55.B10, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

77. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592542 (Vibrio phage 1.175.O._10N.261.55.B3, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

78. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592526 (Vibrio phage 1.158.O._10N.261.45.E12, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

79. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592467 (Vibrio phage 1.093.O._10N.286.55.E10, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

80. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592561 (Vibrio phage 1.191.O._10N.286.52.B4, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

81. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592414 (Vibrio phage 1.030.O._10N.222.55.F9, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

82. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592392 (Vibrio phage 1.005.O._10N.286.48.F2, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

83. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592401 (Vibrio phage 1.017.O._10N.286.55.C11, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

84. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592590 (Vibrio phage 1.223.O._10N.261.48.A9, partial genome) position: , mismatch: 2, identity: 0.938

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggcttta	Protospacer
.**.****************************

85. spacer 1.47|42191|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to CP035920 (Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

acgaacagaaacctgatagtaggcatagtcaa	CRISPR spacer
acgaacagaaatctggtagtaggcatagtcaa	Protospacer
***********.***.****************

86. spacer 1.47|42191|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to CP035920 (Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

acgaacagaaacctgatagtaggcatagtcaa	CRISPR spacer
acgaacagaaatctggtagtaggcatagtcaa	Protospacer
***********.***.****************

87. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592499 (Vibrio phage 1.124.O._10N.286.49.B1, partial genome) position: , mismatch: 2, identity: 0.938

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
catcaacgattatcgaagatggcgcaatcaag	Protospacer
************************. ******

88. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592592 (Vibrio phage 1.225.O._10N.261.48.B7, partial genome) position: , mismatch: 2, identity: 0.938

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
catcaacgattatcgaagatggcgcaatcaag	Protospacer
************************. ******

89. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592547 (Vibrio phage 1.181.O._10N.286.46.C9, partial genome) position: , mismatch: 2, identity: 0.938

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
catcaacgattatcgaagatggcgcaatcaag	Protospacer
************************. ******

90. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592462 (Vibrio phage 1.087.A._10N.261.45.F9, partial genome) position: , mismatch: 3, identity: 0.906

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
tacgcaattgcagtcttcacagaatggtttta	Protospacer
.**.***********************.****

91. spacer 1.43|41947|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG592499 (Vibrio phage 1.124.O._10N.286.49.B1, partial genome) position: , mismatch: 3, identity: 0.906

tgtatcgaaatgatgcacaaccagtacgtcac	CRISPR spacer
agtatcgaagtgatgcacaaccagcacgtcac	Protospacer
 ********.**************.*******

92. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 4, identity: 0.875

ttgttcaac-tcgtcgatgatgtccggcatgtc	CRISPR spacer
-tgttcatcatcgtcgatgatgtccaggatgtc	Protospacer
 ****** * ***************.* *****

93. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

94. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

95. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

96. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

97. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

98. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

99. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_013128 (Borrelia burgdorferi 297 plasmid 297_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

100. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

101. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 5, identity: 0.844

attcagcctcatttttgtcattgtcctagctc-	CRISPR spacer
tttcagcctcatttttggcatt-ttcaagctca	Protospacer
 **************** **** *.* *****

102. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to KM236245 (Bacillus phage Mater, complete genome) position: , mismatch: 5, identity: 0.844

-catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
ccattca-gattatcgaaggtgacgttatcaag	Protospacer
 ***. * ***********.**.**********

103. spacer 1.19|40483|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_010391 (Salmonella phage Fels-1, complete genome) position: , mismatch: 6, identity: 0.812

atggctatgaaaactcaaatagcaatatgtta-	CRISPR spacer
atggctatgaaaactgaattagcaaca-gtggc	Protospacer
*************** ** ******.* ** .

104. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 6, identity: 0.812

ttgttcaactcgtcgatgatgtccggcatgtc--	CRISPR spacer
ttgttcatctcgacgatgatgtc--gcgtggcag	Protospacer
******* **** **********  **.** *

105. spacer 1.31|41215|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MN693047 (Marine virus AFVG_25M111, complete genome) position: , mismatch: 6, identity: 0.812

atttgaacgttacctggtggtgttttctcgcc	CRISPR spacer
ttttgaacattacctggtggtgttgttttacc	Protospacer
 *******.*************** *.*..**

106. spacer 1.31|41215|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MN693506 (Marine virus AFVG_25M112, complete genome) position: , mismatch: 6, identity: 0.812

atttgaacgttacctggtggtgttttctcgcc	CRISPR spacer
ttttgaacattacctggtggtgttgttttacc	Protospacer
 *******.*************** *.*..**

107. spacer 1.35|41459|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

atgcttgggtgatctcaacatgattt-tgccgt	CRISPR spacer
catcttgggtgaactcaacctgatttatgccg-	Protospacer
   ********* ****** ****** *****

108. spacer 1.47|42191|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 6, identity: 0.812

acgaacagaaacctgatagtaggcatagtcaa	CRISPR spacer
acgaacagaaacctgatagtaggtcattacaa	Protospacer
***********************.     ***

109. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to AF068845 (Mycobacteriophage TM4, complete genome) position: , mismatch: 6, identity: 0.812

gcgtaaaacgccctttgattgttgtttggtta	CRISPR spacer
gcgtaaaacgccctgtgatcgttgttgagctt	Protospacer
************** ****.****** .*.*

110. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to KC787101 (Mycobacterium phage 33D, partial genome) position: , mismatch: 6, identity: 0.812

gcgtaaaacgccctttgattgttgtttggtta	CRISPR spacer
gcgtaaaacgccctgtgatcgttgttgagctt	Protospacer
************** ****.****** .*.*

111. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to NC_003387 (Mycobacterium phage TM4, complete genome) position: , mismatch: 6, identity: 0.812

gcgtaaaacgccctttgattgttgtttggtta	CRISPR spacer
gcgtaaaacgccctgtgatcgttgttgagctt	Protospacer
************** ****.****** .*.*

112. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to JX262218 (Propionibacterium phage P104A, complete genome) position: , mismatch: 6, identity: 0.812

-catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
gcggcaac-cttatcgtagatggcgtcatcaag	Protospacer
 *. ****  ****** *********.******

113. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_018841 (Propionibacterium phage P101A, complete genome) position: , mismatch: 6, identity: 0.812

-catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
ccggcaac-cttatcgtagatggcgtcatcaag	Protospacer
 *. ****  ****** *********.******

114. spacer 1.62|43106|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053812 (Vibrio cholerae strain W6G plasmid pW6G, complete sequence) position: , mismatch: 6, identity: 0.812

ttctttcattgctgcctgctcagcctgctcag	CRISPR spacer
ttctagttttgctgactgctcagcctgcttag	Protospacer
****  . ****** **************.**

115. spacer 1.62|43106|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053815 (Vibrio cholerae strain W7G plasmid pW7G, complete sequence) position: , mismatch: 6, identity: 0.812

ttctttcattgctgcctgctcagcctgctcag	CRISPR spacer
ttctagttttgctgactgctcagcctgcttag	Protospacer
****  . ****** **************.**

116. spacer 1.6|39688|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_041884 (Acinetobacter phage vB_AbaM_ME3, complete genome) position: , mismatch: 7, identity: 0.781

acaaaaagctat--ctggtgctgtagttctatat	CRISPR spacer
--caagagttgtaactggtgctttagttctatat	Protospacer
   **.**.*.*  ******** ***********

117. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
ttgccgatgtcgtcgaggatgtccggcacgtc	Protospacer
***.. *  ******* ***********.***

118. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 7, identity: 0.781

ttgttca-actcgtcgatgatgtccggcatgtc	CRISPR spacer
-agtacagacgcgtcgatcatgtccggcatgaa	Protospacer
  ** ** ** ******* ************

119. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 7, identity: 0.781

ttgttca-actcgtcgatgatgtccggcatgtc	CRISPR spacer
-agtacagacgcgtcgatcatgtccggcatgaa	Protospacer
  ** ** ** ******* ************

120. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014277 (Martelella sp. AD-3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ttgttca-actcgtcgatgatgtccggcatgtc	CRISPR spacer
-agtacagacgcgtcgatcatgtccggcatgaa	Protospacer
  ** ** ** ******* ************

121. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039906 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgttca-actcgtcgatgatgtccggcatgtc	CRISPR spacer
-agtacagacgcgtcgatcatgtccggcatgaa	Protospacer
  ** ** ** ******* ************

122. spacer 1.26|40910|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK134375 (Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence) position: , mismatch: 7, identity: 0.781

ctctacctgagtttcctttttattctcagcat	CRISPR spacer
cacaatgtcagtttcgattttattctcagcat	Protospacer
* * *. * ******  ***************

123. spacer 1.28|41032|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.781

cgttgacagtctagcgttcatctcattcatta	CRISPR spacer
cgaggtcagtctggcgttcatgtcattcatat	Protospacer
**  * ******.******** ********

124. spacer 1.47|42191|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018048 (Photobacterium damselae subsp. piscicida strain 91-197 plasmid p91-197-2) position: , mismatch: 7, identity: 0.781

acgaacagaaacctgatagtaggcatagtcaa	CRISPR spacer
acgaacagaaatctgatagtaggtcattacaa	Protospacer
***********.***********.     ***

125. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG820639 (Propionibacterium phage pa9-6919-4, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

126. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to JX262220 (Propionibacterium phage P100D, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

127. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG820638 (Propionibacterium phage pa6919-4, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

128. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MF919533 (Propionibacterium phage Supernova, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

129. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_018849 (Propionibacterium phage P105, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

130. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_027628 (Propionibacterium phage Lauchelly, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

131. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_027389 (Propionibacterium phage PHL141N00, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

132. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to KR337652 (Propionibacterium phage Stormborn, complete genome) position: , mismatch: 7, identity: 0.781

catcaacga--ttatcgaagatggcgttatcaag	CRISPR spacer
--tcggcaaccttatcgtagatggcgtcatcaag	Protospacer
  **..*.*  ****** *********.******

133. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK112550 (Streptomyces phage Olicious, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtagcgatctcgtcggtgatgtccagcatgtc	Protospacer
 *. . * *******.********.*******

134. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG663582 (Streptomyces phage HaugeAnator, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtagcgatctcgtcggtgatgtccagcatgtc	Protospacer
 *. . * *******.********.*******

135. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG663586 (Streptomyces phage ZooBear, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtagcgatctcgtcggtgatgtccagcatgtc	Protospacer
 *. . * *******.********.*******

136. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MG663584 (Streptomyces phage Romero, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtagcgatctcgtcggtgatgtccagcatgtc	Protospacer
 *. . * *******.********.*******

137. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttca-actcgtcgatgatgtccggcatgtc	CRISPR spacer
-agtccgcggtcgtcgatgatgaccggcttgtc	Protospacer
  **.*. . ************ ***** ****

138. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gcgtgaatgtcgtcgatggtgaccggcatgtc	Protospacer
 .**  *  *********.** **********

139. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gcgtgaatgtcgtcgatggtgaccggcatgtc	Protospacer
 .**  *  *********.** **********

140. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gcgtgaatgtcgtcgatggtgaccggcatgtc	Protospacer
 .**  *  *********.** **********

141. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gcgtgaatgtcgtcgatggtgaccggcatgtc	Protospacer
 .**  *  *********.** **********

142. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.75

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gcgtgaatgtcgtcgatggtgaccggcatgtc	Protospacer
 .**  *  *********.** **********

143. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to AP013464 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32) position: , mismatch: 8, identity: 0.75

ctggca--tcgataagcgtgaccgcgatgcggaa	CRISPR spacer
--gataattacataagcgaggccgcgatgcggaa	Protospacer
  *..*  *  ******* *.*************

144. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to AP013750 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C51-MedDCM-OCT-S46-C76, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ctggca--tcgataagcgtgaccgcgatgcggaa	CRISPR spacer
--gataattacataagcgaggccgcgatgcggaa	Protospacer
  *..*  *  ******* *.*************

145. spacer 1.38|41642|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_015710 (Simkania negevensis Z plasmid pSn, complete sequence) position: , mismatch: 8, identity: 0.75

attcagcctcatttttgtcattgtcctagctc	CRISPR spacer
attcagccccatttttgtccttgctaaagatt	Protospacer
********.********** ***..  ** *.

146. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to MN840487 (Proteus phage 2207-N35, complete genome) position: , mismatch: 8, identity: 0.75

gcgtaaaacgccctttgattgttgtttggtta-	CRISPR spacer
gcgtaaaacgccatttgagtgtta-ccaattac	Protospacer
************ ***** ****. ....***

147. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to NC_041925 (Proteus phage VB_PmiS-Isfahan, complete genome) position: , mismatch: 8, identity: 0.75

gcgtaaaacgccctttgattgttgtttggtta-	CRISPR spacer
gcgtaaaacgccatttgagtgtta-ccaattac	Protospacer
************ ***** ****. ....***

148. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to MG945570 (UNVERIFIED: Microviridae sp. isolate 3500-1801, complete genome) position: , mismatch: 8, identity: 0.75

gcgtaaaacgccctttgattgttgtttggtta	CRISPR spacer
gcgtaaaacgcgctttgatttttactggcctg	Protospacer
*********** ******** **..* * .*.

149. spacer 1.48|42252|32|NC_005871|CRISPRCasFinder,CRT matches to MG575420 (Proteus phage vB_PmiP_RS10pmA, complete genome) position: , mismatch: 8, identity: 0.75

gcgtaaaacgccctttgattgttgtttggtta-	CRISPR spacer
gcgtaaaacgccatttgagtgtta-ccaattac	Protospacer
************ ***** ****. ....***

150. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_042047 (Serratia phage vB_Sru_IME250, complete genome) position: , mismatch: 8, identity: 0.75

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
gatatgtgattatcgtcgatggcgttatcaac	Protospacer
 **  ..********  **************

151. spacer 1.50|42374|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041069 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence) position: , mismatch: 8, identity: 0.75

catcaacgattatcgaagatggcgttatcaag	CRISPR spacer
cactataaataatcgaagatggtgttatcaat	Protospacer
**..*  .** ***********.********

152. spacer 1.55|42679|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

ttcgtcgtaccgttggctcgcatggtgcagct	CRISPR spacer
ttctggtagccgatggctcgcatggtgaagct	Protospacer
***     .*** ************** ****

153. spacer 1.57|42801|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_048171 (Synechococcus phage S-B28, complete genome) position: , mismatch: 8, identity: 0.75

gtggccatgttgctgcccgttactacaaagaa	CRISPR spacer
acctcactgatgctgccctttactacaaagaa	Protospacer
..  *  ** ******** *************

154. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
acaaacaacagcctttcggttcgcacgccgcg	Protospacer
*  ******** *********** ** .*.

155. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
aaaaacaacagcctttcggttcgcacgccgcg	Protospacer
*. ******** *********** ** .*.

156. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
aaaaacaacagcctttcggttcgcacgccgcg	Protospacer
*. ******** *********** ** .*.

157. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
aaaaacaacagcctttcggttcgcacgccgcg	Protospacer
*. ******** *********** ** .*.

158. spacer 1.10|39933|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.719

atcagtgatcttaatgctacagcttgattcaa	CRISPR spacer
gtttatgatcttaaggctacggcttgatatat	Protospacer
.*. .********* *****.******* .*

159. spacer 1.11|39994|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 9, identity: 0.719

acgttgtgccatttatctcgctaatctcaccg	CRISPR spacer
caggtctgccattttcctcgctaatctcatta	Protospacer
  * * ******** .*************...

160. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036351 (Planctomycetes bacterium K2D plasmid pK2D_1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gaatcgacgtcgtcgatgatgaccggcttgtc	Protospacer
  .*. *  ************ ***** ****

161. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gttttcaactggtcgatgatggccgggctcga	Protospacer
 * ******* ********** ****  *

162. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtgctcaactcgtcgaagatgtcccgtaccgt	Protospacer
 **.************ ******* *.*.  .

163. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
aggagcgactcgtcaatcatgtccggcatgaa	Protospacer
  *  *.*******.** ************

164. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026546 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
aggagcgactcgtcaatcatgtccggcatgaa	Protospacer
  *  *.*******.** ************

165. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009358 (Vibrio tubiashii ATCC 19109 plasmid p57, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttca-----actcgtcgatgatgtccggcatgtc	CRISPR spacer
-----caaaaacactcgtcgatgatgtccgagatgct	Protospacer
     **     ******************. ***..

166. spacer 1.51|42435|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_024149 (Lactoccocus phage WP-2, complete genome) position: , mismatch: 9, identity: 0.719

attcaaagttgattcagtggaagaacttgtaa	CRISPR spacer
aattgaagttgattcattggacgaactttatg	Protospacer
* *..*********** **** ******   .

167. spacer 1.55|42679|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026518 (Deinococcus sp. NW-56 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ttcgtcgtaccgttggctcgcatggtgcagct	CRISPR spacer
aatgtcgtaccgcttgctcgcatggtcaggca	Protospacer
  .*********.* ***********  .**

168. spacer 1.62|43106|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MN062703 (Microbacterium phage McGalleon, complete genome) position: , mismatch: 9, identity: 0.719

ttctttcattgctgcctgctcagcctgctcag	CRISPR spacer
agccgagactgctgcctgctcagcacgctcag	Protospacer
  *.   *.*************** .******

169. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 9, identity: 0.719

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
cgattggaaaacattaccatcagagtaaagaa	Protospacer
 *****.****** ********** .  *  *

170. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
cgattggaaaacattaccatcagagtaaagaa	Protospacer
 *****.****** ********** .  *  *

171. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.688

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
caaaacaacagcctttcggttcgcacgccgcg	Protospacer
 . ******** *********** ** .*.

172. spacer 1.4|39566|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_047955 (Pseudomonas phage Nerthus, complete genome) position: , mismatch: 10, identity: 0.688

agcaacaacaggctttcggttcgaacctcaac	CRISPR spacer
agcaacaagaggctttccgttcgtggaagatg	Protospacer
******** ******** ***** .    *

173. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

174. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

175. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

176. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

177. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

178. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatctggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

179. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

180. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatctggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

181. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatctggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

182. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

183. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

184. spacer 1.21|40605|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 10, identity: 0.688

aaagaaggtagttctgaaattgcggataccac	CRISPR spacer
ggatccggtggttctgaaattgcagatactgg	Protospacer
..*   ***.*************.*****..

185. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 10, identity: 0.688

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtgctcaactcgtcgaagatgtccctgaccgt	Protospacer
 **.************ *******   *.  .

186. spacer 1.22|40666|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 10, identity: 0.688

ttgttcaactcgtcgatgatgtccggcatgtc	CRISPR spacer
gtgctcaactcgtcgaagatgtccctgaccgt	Protospacer
 **.************ *******   *.  .

187. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to AP013465 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58) position: , mismatch: 10, identity: 0.688

ctggcatcgataagcgtgaccgcgatgcggaa	CRISPR spacer
gataagtacataagcgaggccgcgatgcggaa	Protospacer
   . .*  ******* *.*************

188. spacer 1.42|41886|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023312 (Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence) position: , mismatch: 10, identity: 0.688

cacacaattgcagtcttcacagaatggcttta	CRISPR spacer
agtctaattgcagtgttcacacaatggctacc	Protospacer
 .. .********* ****** ******* .

189. spacer 1.60|42984|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020696 (Sulfitobacter sp. D7 plasmid p2SUD7, complete sequence) position: , mismatch: 10, identity: 0.688

atgaagagcgacaacagcggcttttgcttttt	CRISPR spacer
gacgatctcgacaccggcggcttttgcttttg	Protospacer
.  .*   ***** *.***************

190. spacer 1.60|42984|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022422 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-7, complete sequence) position: , mismatch: 10, identity: 0.688

atgaagagcgacaacagcggcttttgcttttt	CRISPR spacer
gacgatctcgacaccggcggcttttgcttttg	Protospacer
.  .*   ***** *.***************

191. spacer 1.62|43106|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_017792 (Deinococcus gobiensis I-0 plasmid P4, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcattgctgcctgctcagcctgctcag	CRISPR spacer
cttggccactgctgcctgctcagcttgctgct	Protospacer
.*.  .**.***************.****

192. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010187 (Escherichia coli strain M6 plasmid A, complete genome) position: , mismatch: 10, identity: 0.688

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
gaatttgaaaacaataccatcagattttcact	Protospacer
..*** .******************..*  .

193. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010207 (Escherichia coli strain M11 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
gaatttgaaaacaataccatcagattttcact	Protospacer
..*** .******************..*  .

194. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010197 (Escherichia coli strain M9 plasmid A, complete genome) position: , mismatch: 10, identity: 0.688

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
gaatttgaaaacaataccatcagattttcact	Protospacer
..*** .******************..*  .

195. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010222 (Escherichia coli strain M19 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
gaatttgaaaacaataccatcagattttcact	Protospacer
..*** .******************..*  .

196. spacer 1.64|43228|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010214 (Escherichia coli strain M15 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

agattgaaaaacaataccatcagatcctatta	CRISPR spacer
gaatttgaaaacaataccatcagattttcact	Protospacer
..*** .******************..*  .

197. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 11, identity: 0.656

ctggcatcgataagcgtgaccgcgatgcggaa	CRISPR spacer
tgcaggccgctaagcgtgcccgcgatgcgggc	Protospacer
.  . ..** ******** ***********.

198. spacer 1.27|40971|32|NC_005871|CRISPRCasFinder,CRT,PILER-CR matches to MF375456 (Xanthomonas phage phi Xc10, complete genome) position: , mismatch: 11, identity: 0.656

ctggcatcgataagcgtgaccgcgatgcggaa	CRISPR spacer
acaaagctgataagcgtgaacgcgatgccgat	Protospacer
 ... ...*********** ******** **

199. spacer 1.65|42252|1008|NC_005871|PILER-CR matches to NC_005871 (Photobacterium profundum SS9 plasmid pPBPR1, complete sequence) position: , mismatch: 948, identity: 0.06

gcgtaaaacgccctttgattgttgtttggttacggttcagccccgtgagtacggggaaca	CRISPR spacer
gcgtaaaacgccctttgattgttgtttggttacggttcagccccgtgagtacggggaaca	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_006370_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006370_1

3457153-3457252

Orphan

Consensus_repeat	Method
ACTTGAACCACCGACCTCACCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_006370_1

>merge|NC_006370|1|3457153-3457252|CRISPRCasFinder
ACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAGACCCATTTGAATCTCGTTCACTTGAACCACCGACCTCACCACT

>NC_006370|1|1|3457153-3457252|CRISPRCasFinder
ACTTGAACCACCGACCTCACCCTT	ATCAGGGGTGCGCTCTAACCACCTGAGCTACAGACCCATTTGAATCTCGTTC
ACTTGAACCACCGACCTCACCACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_006370.1\|WP_011219614.1\|3466373_3467549_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
NC_006370.1\|WP_011219604.1\|3446650_3447682_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|211834
NC_006370.1\|WP_041394498.1\|3445275_3445962_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|225374
NC_006370.1\|WP_011219606.1\|3448197_3449394_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NC_006370.1\|WP_011219610.1\|3462241_3462619_+\|hypothetical-protein	unknown	unknown	unknown
NC_006370.1\|WP_006232597.1\|3463491_3464466_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NC_006370.1\|WP_041394500.1\|3459380_3461954_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_006370.1\|WP_011219615.1\|3467616_3468744_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NC_006370.1\|WP_011219600.1\|3443206_3444184_-\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NC_006370.1\|WP_011219616.1\|3468906_3469980_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NC_006370.1\|WP_011219601.1\|3444367_3445258_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NC_006370.1\|WP_011219611.1\|3462737_3463490_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NC_006370.1\|WP_011219599.1\|3439530_3443010_-\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|236835
NC_006370.1\|WP_011219605.1\|3447774_3448110_-\|DUF2799-domain-containing-protein	unknown	unknown	unknown
NC_006370.1\|WP_041394499.1\|3446045_3446348_+\|YebG-family-protein	unknown	unknown	gnl\|CDD\|377779
NC_006370.1\|WP_011219607.1\|3449507_3449810_-\|hypothetical-protein	unknown	unknown	unknown
NC_006370.1\|WP_172635948.1\|3451876_3452912_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_006370.1\|WP_011219617.1\|3470224_3471943_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_006370.1\|WP_011219613.1\|3465777_3466128_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|182378
NC_006370.1\|WP_011219612.1\|3464633_3465362_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|182792

Protein	Function_ID	Function_description	E-value
NC_006370.1\|WP_011219614.1\|3466373_3467549_+\|prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
NC_006370.1\|WP_041394498.1\|3445275_3445962_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	2.37638e-28
NC_006370.1\|WP_011219606.1\|3448197_3449394_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.60107e-73
NC_006370.1\|WP_011219615.1\|3467616_3468744_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NC_006370.1\|WP_006232597.1\|3463491_3464466_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
NC_006370.1\|WP_041394500.1\|3459380_3461954_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_006370.1\|WP_011219600.1\|3443206_3444184_-\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	4.31117e-106
NC_006370.1\|WP_011219616.1\|3468906_3469980_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NC_006370.1\|WP_011219601.1\|3444367_3445258_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.35485e-75
NC_006370.1\|WP_011219611.1\|3462737_3463490_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	5.46687e-127
NC_006370.1\|WP_011219599.1\|3439530_3443010_-\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|236835	PRK11069, recC, exodeoxyribonuclease V subunit gamma.	0
NC_006370.1\|WP_041394499.1\|3446045_3446348_+\|YebG-family-protein	gnl\|CDD\|377779	pfam07130, YebG, YebG protein. This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.	4.8508e-29
NC_006370.1\|WP_011219604.1\|3446650_3447682_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|211834	TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.	0
NC_006370.1\|WP_172635948.1\|3451876_3452912_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.91811e-24
NC_006370.1\|WP_011219617.1\|3470224_3471943_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NC_006370.1\|WP_011219613.1\|3465777_3466128_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	3.06594e-26
NC_006370.1\|WP_011219612.1\|3464633_3465362_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	2.82345e-109

>NC_006370.1|WP_172635948.1|3451876_3452912_+|IS630-family-transposase
MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTSVNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGGRLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQDDFKKIFKMKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQFEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVIMDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAFKDYDEILDKVCSAWNSFLSDTKRVTRMCARSWISLTS
>NC_006370.1|WP_011219607.1|3449507_3449810_-|hypothetical-protein
MKFFYERTENEDEVKIVLKPHSFFIMLLMIAVWLINDLVLKSAPIAQFIMPIFIAFMVIRFFSIIRVQKEVLLGMKQRKAETAGSKFSLKNPLTYTIKKH
>NC_006370.1|WP_011219606.1|3448197_3449394_-|multidrug-effflux-MFS-transporter
MERFNWKPLLLACLMVSIGQLSLGLVFPSLPWIAQDLNVSADQAQLLVSVYLLGFGPSQLVYGPLSDVLGRRPVLLSGLLIALLGLILAVTHADSFSWLLAGRFIQGLGAGSVAVLARATLRDSYQNQNFVKAMTWVAIVAAFTPIVAPVIGGLVNHYWGWLTVFIILLAYIGLIWLVLLFAFTETLNQTNKPESVGKLVGSYFSLMRERHFLSFAGIGWINFSLVVISISLMPFIMQVQIGMSSEQYALWAMIPAFGMLSGGLLCQRIRPIFGTQKVLQIAPFLHLIAGIVLFFSPMTPQWISAGHFLLAMANGMAFPCAQSMLLIPYGSRAGTVSALSGACQMVFASLISGFLLRLGMSQAWHLGLVLLVAAGLGLILVRIGAKSESGKQAAAALN
>NC_006370.1|WP_011219605.1|3447774_3448110_-|DUF2799-domain-containing-protein
MVRLMVFIALIILSGCAAQYEADLSENKEWQQLGAYHGEQGYRELNAKKLNDLGALSETEYESYRAGYLKGRFDYCSGRQTVTTVINQGYPDDCAAPKQGRSSYSVIERGY
>NC_006370.1|WP_011219604.1|3446650_3447682_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MASFSIALGTATKNRDGKIIEAFFPTPALNPSEELVKAVAAVVSYKEGNQSIEVTPAQCADLTVIFQAAGDEKSAQFAAKASQSSQTLIIVILATDAAPTSVSEGFLKLQLISHRLVKPHGVVLDGIFGLLHNIAWTNKGPIDLPELAERQMDARLNGEVIIVDCVDKFPKMVDYIVPTGIRIADTSRVRLGAHVGEGTTVMHEGFINFNAGTTGVSMVEGRISAGVMVGEGSDIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVRMLDNEGKEVEIAKARDLAGKADLLFRRNSITGQIECLTNKSAVELNSELHSNN
>NC_006370.1|WP_041394499.1|3446045_3446348_+|YebG-family-protein
MAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLAASELFEDEAKQEELSLFLAQKREEVLIALGAKKAKPAPKKKTESAKIVEEQSQDEAA
>NC_006370.1|WP_041394498.1|3445275_3445962_-|DNA-3-methyladenine-glycosylase-I
MVKEKFAQIYTRASERKGGDDELESLLSVPLSAQEIKTIPDDRWLAAFSQKVFQCGISWKVVRSKWPSFEEVFFQFNIEKMLLMPTDMWERKATDPAIIRHLAKVMTIPANAQMIHEAALEYGSFAAMVADWPESDIIGLWRYMKKNGKRLGGNTGPYTLRVMGKDTFLLTQDMESYLRNTGVIDGGRDTQKSLLATQQAFNDWQQETGRPLSQISQIISFSCGDNRI
>NC_006370.1|WP_011219601.1|3444367_3445258_+|LysR-family-transcriptional-regulator
MNIALKQLKVFVTVAQERTITAAADKLFLSKPAVSMALSELEKQLDHKLFDRNNNRLIINEQGKRLLPLADELLSRSHSIENLFDQTGPVTGNLKIGSSDTVGNQITPFLLRDFRESSQHYNQSLFISNTAQICHKLSEFELDIGLVEGKVQQNDLVTEPWLDDEMVVVCHPSHPLTLINNLRLVDLENSEWVLREPGSGTREFFLNRISPRLEKWHQAFELNTTEAIINCVAANLGITCLSKLAIQHAVNDNRLVILELPLDMRRQYWLLFHKEKYQSPLLKLFLNFCQKWDLKR
>NC_006370.1|WP_011219600.1|3443206_3444184_-|TDT-family-transporter
MIKTTKNKVAGAPTPMAGLALGIASLGWCWENAADLNGTGQVTGAVIASILLVILTTKFLFHPKSLWNDLTHHVVGSVVPTFAMALMAVSKAVGIYAPYAAQVLWLFAVILHLVFLVLFVYHRVIEFKLHHMVPSWFVPPIGLIVADVAFPGGALRPIAEALLVFGMGVYAVMLPIMIYRLIFSHEIPDAAKPTIAIMAAPASLSLAGYLTVVQNPSPVIIGLLAGIAVLMTFVIYVAFFRLLRLDFSPGYAAFTFPMVIGATALYKTAVWMAAYGFAPEYVQQVFSLATLELYVSTAVVSYVAMRYLAFYRPISRLFNPVPHNA
>NC_006370.1|WP_011219599.1|3439530_3443010_-|exodeoxyribonuclease-V-subunit-gamma
MFTVYHSNQLDLLKSLLVELIRLNPLDNPFEPEQILVQSPGMSQWLKMELATSFGIAANLEFPLPATYIWKMFTQVLADVPERSAFNKEAMTWKLMEVLPKQLGLPEFEPLKRYLENDPESLKIYQLAEKIADIFDQYLVYRPEWIQQWEAGEIVAELGDEHPWQPILWQALYDQTLALGQSPYHRANLYEHFIDTLDNYASSGTLPANLPKRLFVFGISSLPPRYLDALAALGEHIDVHLMFTNPCRYYWGDIRDRKHLARLAANQRVTIKQLNVSSDGILHGDENVSDENVAVLKDTDENHYDDEMHNDVVGNSLLASMGKLGRDNMYLLSEMQVNEVDAGFVDIEPDSLLHAIQADILNLEDRQNDQILDSSDHKFPISDGDMSLSIHACHSPMREVEVLHDNLLAMFETETAKGLKPRDVIVMVADINAYSAAIQSVFGNAPGNRYIPFSISDRTAEQENPILLAFMRLLTLPESRCNASELLELLEVPAVMNKFGFDSNSFEKIKRWIEEAGVRWGLDEKTACQFELPEQNQNTWLFGIQRMLLGYAMPHDAGLFDGISAYEQIQGLDAELAGQLAGFIDSLISYREQLAQPQCVSSWTDLLNQLLDDFLAVELDGELVLKSIRDNLHRLHEQLADAGYQSLISPAVLTQYLQDKLSGERVSQRFLAGQVNFCTLMPMRSIPFKVVCLLGMNDGAYPRNIAPEGFDLMNGRTKAGDRSRRDDDRYLFLEAIQSAQESLYISYVGRSIQDNAEKVPSVLVSELIEYCQQGYCLEGDEALPVDQSAKRLKEELLVHHHPLVPFSPTAFSGDNPSFAAEWLPAAARHGEANKAFQLTALDAEPMVSDQGLVLELAELQRFWRLPVRYFFNRRLKVFFEPPMGVMEDDEPFILNGLESYLLRDELLALLLDAKVSNKNEDAVFAAFSAEQKAAGGLPVAAFGELDLAMTRTEVVSLADKIVPLVNRPLDDHEVDLIFHVDGHDVNLQGWLKQRYQSGLVRYRSGKVRAQDHLTAWFDHLCLAASHCGQQTHLIGTDKHLVLFIIEPDQAKAYLQDVMALYYHGLNQPLPYFPKTAQAGIQACIGRDGSWKDDEGTIDKSLKKMADCFNDGYLFPGEGADSYIARVWPQWNDELAAEASQLASRVLQAAILNSEVVEDE
>NC_006370.1|WP_041394500.1|3459380_3461954_-|ATP-dependent-chaperone-ClpB
MRLDRFTSKFQMAIFDGQSLALGRDHQYIEPAHLMVALLNQDGSTIRPLLTMLNVDISQLRSRLGELLDHLPKVTGIGGEVQLSNDMGLLLNMCDKLAQKRKDKFISSELFILAAVDDKGSLGKLLKELGLTAAKIEQAINQVRGGQKVDDQNAEENRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGQPGVGKTAIVEGLAQRIVNGEVPEGLRHKRVLSLDMGSLIAGAKYRGEFEERLKSVLNELSQEEGSVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAARLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPESLDRLERRIIQLKIEQQALSKESDAASQKRLNDICEELDVKEREYAELEEVWNAEKAALSGTQHIKSELEQARMNMEVARRAGDLNRMSELQYGKIPELEKQLDLAAQAEMQEMSLLKNKVTDAEIAEVLSKQTGIPVAKMLEGERDKLLRMEDELHQRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFMFDSEDNMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQENFGNLNYEGIKNMVLEVVSQYFRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLETGKPIDLLIEDEHLVTKQ
>NC_006370.1|WP_011219610.1|3462241_3462619_+|hypothetical-protein
MFKKSLITVAVALTVLASSTGAMAQRDIQEKRQDVRQEARIENRTEDRIDNRRNPTTVATANTVVIIQGAMVRTVSYNGIVLLHDTINQRFYRAKNNGYEIYTVPYGAKVIELSMANPTNITLIH
>NC_006370.1|WP_011219611.1|3462737_3463490_-|peptidoglycan-editing-factor-PgeF
MLIIPDWPAPKRVKAVSTTRKGGVSLAPYDGLNLGLHVGDDTERVQQNRSLLQRELGLVQVPAWLNQIHSSKVIDLKQPLTGLIDADGSYSREPDLACVIMTADCLPVLLCDKDGTQVAAVHAGWRGLAGGIIEAALDKFSVPPNEIMAWLGPAIGPTAFEVGGEVRQQFMAVDPQAKLAFTPQTKVVDGQSGNDKWLANIYLLATQRLQQYGITQVYGGDHCTVNEPELFYSYRREPITGRQASLIWLD
>NC_006370.1|WP_006232597.1|3463491_3464466_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MAQQIELTNTVNDSQLGMRLDQVIAELYPDYSRSRVKEWILKNMVSVNGEIVNKPRLKMMGGEELFIKAEIEDEVRWVAQDIPLDIVYEDEHILVINKPRDFVVHPGAGTPDRTVLNALLFHCPALAEVPRAGIVHRLDKDTTGLMVVAKTIQAQTRLVRALQKRKITREYEAIAMGKMTGGGTVEKPIGRHATKRICMAVHELGKPAITHYRVAEHFREHTRLVLRLETGRTHQIRVHMSYMSHPLVGDAIYGGRPRPPRHASDELILALRSFDRQALHARMLRLSHPITGELMEWRAPLPNDILAMIDILRKDKIENDEDDF
>NC_006370.1|WP_011219612.1|3464633_3465362_+|outer-membrane-protein-assembly-factor-BamD
MKRLTITTLLAVAILSGCSSTEEVVPDVPPAELYVTAQQALQSGSWTTAIERLETLDSRYPFGAYSEQVQLDLIYAYYKNDDLALGEATIARFNRLNPAHEKSDWVLYMRGLTQMAQDRSFMHDIFSIDRHDRDPEPARKAFRDFKRLLDRYPNSQYAADAKARMIFIKNRLADYDLATVDFYIRREAWIAAINRSQQIQKLYPDTQAARKSLPLMLTAYEKLGLQEPIENTKKLIALNPVN
>NC_006370.1|WP_011219613.1|3465777_3466128_+|ribosome-associated-translation-inhibitor-RaiA
MTLEITGKNIDITPAIRERLEFKFKKLEKFQLPLVNKHVMISKEPSKTFKIEASAAIPGGKIVASAEHNDLFGAITELYQKLERQINKQAHKPAARRASHSDKPVIEEDEVEAVDA
>NC_006370.1|WP_011219614.1|3466373_3467549_+|prephenate-dehydratase
MTEQHYSLDDIRKNVSHIDNEILKLLSERRLLSLEVAKSKIGTAKPVRDQAREQELLLRLIKTGKTQQLDALYVTQIFHTIIEDSVLFQQAYLQKLANPDSLQPVARVSFLGAKGSYSHLASRNYFSRKQTKLVEMSCSTFRDVLNIVETGNADYGVLPIENTSSGSINEVYDLLQHTSLSIVGEITQPIEHCLLTVGDVDVKGINTLYSHPQPHQQCSEYLHSMGDITQEYCSSTAEAMQKVAELNLPNVAAIGNASSGKLYGLTPVKGNIANQQENFTRFIVVARKPVDVTSLIPAKSTLIMSTAQKAGSLVECLMVLRNLNINMTKLESRPVIGNPWEEMFYLDVEENLKSDVMQQALEELTRLTRFIKVLGCYPSENIKPTEVEIEE
>NC_006370.1|WP_011219615.1|3467616_3468744_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MVAELSKLRDQIDDVDQQMVELLARRLSLVEEVGHVKSLHGLPIYAPDREAAMLASRRHEAEQKGVPPDLIEDILRRTMRESYSSENDSGFKCLKPELRPIVVVGGHGQLGGLFCRLFELSGYQVRQLGSQDWDRADEILADAGMVVVSVPINITEQIIGKLSNLPDDCILADLTSIKSGPLQAMLEVHNGPVIGLHPMFGPDISSLAKQVIVYCDGRNPENYQWLLEQFQIWGATLNRISAIEHDQGMTLIQALRHFTSFVYGVHLAEEDPKIEQLMSLSSPIYRLELAMVGRLFAQDAQLYADIIMSAPQNVAMIKRFHQRFGEAIKMLETQDKEAFKQAFNQVEHWFGDYAGHFLAESQGLLRQANDSTHRS
>NC_006370.1|WP_011219616.1|3468906_3469980_-|3-deoxy-7-phosphoheptulonate-synthase
MQKDQLNNVHIQDECVLITPQQLKARLPLSETALNFIRESRQTIADITHKRDHRLLVVCGPCSIHDIDAAKAYAQKLKQLSEELSDQLYIVMRVYFEKPRTTVGWKGLINDPHLDGSFEVEEGLHIGRQLLIDLVEMGIPLATEALDPISPQYLGDLFSWAAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMKAAASGHRFMGINPEGQVALLNTQGNPDGHVILRGGKQTNYDSVSVTECENEMHQSGLSPSLMVDCSHANSRKDYRRQPLVAEDVLHQIREGNKSIIGLMIESHLNEGSQSADLPREEMAYGVSITDACISWEDTETLLRRTRKELTPFLKDRCEG
>NC_006370.1|WP_011219617.1|3470224_3471943_+|sensor-histidine-kinase
MELIFSLLQQLSVYLVIAYLLSKTPLFMPLTTVSGRLSQRFSCYVLFSLFCILGTYFGLNIEDAIANTRAIGAVMGGLLGGPIVGFAVGLTGGMHRYSMGGFTDVACAISTTTEGLLGGLLHSYYVRRGQVDQLYRPFIVFTITLVAEIIQMFIILIVAEPYDKALHLVSAIALPMVIANSLGAALFMSIIQDRKTIYEKYSAAFSSRALKIAQRSVGILSQGFNEESTKKIAKIVYEETGVGAVAITDRDKILAFIGIGDDHHLPGTPISSGYTRRSIDNCELVYADGHDMPYCCSLSNRCKLGSALVIPLVGGNNDVLGTIKLYEPKRKLFSTVNLTLGEGIAKLLSNQILTGRYEQQQILLTQAELRLLQAQVNPHFLFNALNTISAIIRRDPDKARQLIQHLSQFFRRNLKQNIETVTISEELQHVRSYLEIELARFSDRLNVEIIVPDELMSINLPTFTLQPLVENAIKHGTSSLLENGQIIIRGYVFDNHLVLEVEDNAGTYQPVSEESGLGMKIVDKRLKNMFGQQYGLKMSSQPNIWTRATITLPEDKTLQHNDINKTYTAENK

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Crispr_ID: NC_006370_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006370_2

3541979-3542057

Orphan

Consensus_repeat	Method
GCTCTGCATCTTCTTCTCAATCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_006370_2

>merge|NC_006370|2|3541979-3542057|CRISPRCasFinder
GCTCTGCATCTTCTTCTCAATCTTCTAGTAACAGTGAGCGAGATGAAGAAGAGAGCTCAGCATCTTCTTCTCAATCTTC

>NC_006370|2|2|3541979-3542057|CRISPRCasFinder
GCTCTGCATCTTCTTCTCAATCTTC	TAGTAACAGTGAGCGAGATGAAGAAGAGA
GCTCAGCATCTTCTTCTCAATCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006370.1\|WP_041394520.1\|3549039_3549459_+\|hypothetical-protein	unknown	unknown	unknown
NC_006370.1\|WP_011219678.1\|3544252_3544867_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376318
NC_006370.1\|WP_006232559.1\|3539176_3539437_-\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|225489
NC_006370.1\|WP_011219675.1\|3540783_3541245_+\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NC_006370.1\|WP_011219674.1\|3539792_3540782_+\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NC_006370.1\|WP_011218608.1\|3545443_3546730_+\|IS4-like-element-ISPpr4-family-transposase	unknown	unknown	gnl\|CDD\|237802
NC_006370.1\|WP_006232552.1\|3551376_3551754_-\|DUF134-domain-containing-protein	unknown	unknown	gnl\|CDD\|224261
NC_006370.1\|WP_011219668.1\|3533915_3534911_-\|sigma-E-factor-regulatory-protein-RseB	unknown	unknown	gnl\|CDD\|236525
NC_006370.1\|WP_011219666.1\|3531551_3533345_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_006370.1\|WP_011219667.1\|3533421_3533919_-\|SoxR-reducing-system-RseC-family-protein	unknown	unknown	gnl\|CDD\|225628
NC_006370.1\|WP_011219669.1\|3534910_3535609_-\|anti-sigma-E-factor	unknown	unknown	gnl\|CDD\|182789
NC_006370.1\|WP_011219682.1\|3549603_3550563_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NC_006370.1\|WP_011219684.1\|3550898_3551375_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238431
NC_006370.1\|WP_011219685.1\|3552239_3552443_+\|DUF1107-domain-containing-protein	unknown	unknown	gnl\|CDD\|368954
NC_006370.1\|WP_006232563.1\|3535633_3536212_-\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|131985
NC_006370.1\|WP_041394518.1\|3543545_3544256_+\|AHH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379603
NC_006370.1\|WP_011219672.1\|3538788_3539208_-\|cell-shape-determining-protein	unknown	unknown	unknown
NC_006370.1\|WP_041394517.1\|3537051_3538674_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236374
NC_006370.1\|WP_086000055.1\|3547418_3548863_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_006370.1\|WP_011219683.1\|3550707_3550902_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538

Protein	Function_ID	Function_description	E-value
NC_006370.1\|WP_011219678.1\|3544252_3544867_+\|hypothetical-protein	gnl\|CDD\|376318	pfam00330, Aconitase, Aconitase family (aconitate hydratase).	0.00110086
NC_006370.1\|WP_006232559.1\|3539176_3539437_-\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	7.42217e-28
NC_006370.1\|WP_006232563.1\|3535633_3536212_-\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|131985	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.	3.32727e-122
NC_006370.1\|WP_011219674.1\|3539792_3540782_+\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	1.01186e-110
NC_006370.1\|WP_011218608.1\|3545443_3546730_+\|IS4-like-element-ISPpr4-family-transposase	gnl\|CDD\|237802	PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.	4.9852e-13
NC_006370.1\|WP_006232552.1\|3551376_3551754_-\|DUF134-domain-containing-protein	gnl\|CDD\|224261	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only].	1.55801e-32
NC_006370.1\|WP_011219668.1\|3533915_3534911_-\|sigma-E-factor-regulatory-protein-RseB	gnl\|CDD\|236525	PRK09455, rseB, anti-sigma E factor; Provisional.	0
NC_006370.1\|WP_011219666.1\|3531551_3533345_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_006370.1\|WP_011219667.1\|3533421_3533919_-\|SoxR-reducing-system-RseC-family-protein	gnl\|CDD\|225628	COG3086, RseC, Positive regulator of sigma E activity [Signal transduction mechanisms].	2.915e-45
NC_006370.1\|WP_011219675.1\|3540783_3541245_+\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	4.52031e-40
NC_006370.1\|WP_011219669.1\|3534910_3535609_-\|anti-sigma-E-factor	gnl\|CDD\|182789	PRK10863, PRK10863, anti-sigma-E factor RseA.	3.12302e-54
NC_006370.1\|WP_011219682.1\|3549603_3550563_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.19515e-52
NC_006370.1\|WP_011219684.1\|3550898_3551375_-\|hypothetical-protein	gnl\|CDD\|238431	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	6.78626e-22
NC_006370.1\|WP_011219685.1\|3552239_3552443_+\|DUF1107-domain-containing-protein	gnl\|CDD\|368954	pfam06526, DUF1107, Protein of unknown function (DUF1107). This family consists of several short, hypothetical bacterial proteins of unknown function.	2.53762e-27
NC_006370.1\|WP_041394518.1\|3543545_3544256_+\|AHH-domain-containing-protein	gnl\|CDD\|379603	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH. AHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif, AHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. Like WHH and LHH, the AHH nuclease contains 4 conserved histidines of which, the first one is predicted to bind a metal-ion and the other three ones are involved in activation of a water molecule for hydrolysis.	2.10163e-14
NC_006370.1\|WP_041394517.1\|3537051_3538674_+\|L-aspartate-oxidase	gnl\|CDD\|236374	PRK09077, PRK09077, L-aspartate oxidase; Provisional.	0
NC_006370.1\|WP_086000055.1\|3547418_3548863_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.60782e-34
NC_006370.1\|WP_011219683.1\|3550707_3550902_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	3.12587e-25

>NC_006370.1|WP_011219675.1|3540783_3541245_+|YbaK/EbsC-family-protein
MQTSVIHFLDNEGVDYRLLPHSKPAKTIEEAAKERGVAPEQMVKSILLRDMSGFHVLACVPGPAQVDPTKVRAIFGCRRMTCADAADVEKITGLVIGTVAPVGLKQPLPLIFDHSIKAHERVNISSGDRMAGIELETDDLLLLCDPMFADICR
>NC_006370.1|WP_011219674.1|3539792_3540782_+|tRNA-modifying-protein-YgfZ
MSIEFNALNFKKVALAAQDKLPKLALINLDDWGLITLIGDDKKSYLQGQVTCDVVSLPINASIFGAHCDAKGKMRTIFRLFNHNEGYGFLQRKSVMEIQLPELKKYAVFSKVDIEASSDVLLGLSGEQAQAVVEQHFPGDGDVRVITAGTAIKVDDDRWLFAIAPEQAEQLINTLVETHNNVQLSDSTLWDLYDVLYAIPRIDAVTALEFIPQAVNLQAVDGISFKKGCYTGQETVARAKYRGINKRAMYIVTGEATQFPFTGDALERSVGDNWRKGGTLLASYLYADGQAIALVVLPNDLDEATQFRLADQPEAIWTQLDLPYSLDDK
>NC_006370.1|WP_006232559.1|3539176_3539437_-|succinate-dehydrogenase-assembly-factor-2
MLSSDERARLKWACRRGMLELDVIIMPFFEECLDDLPDQEQRDFVSLLTSDDPDLFTWMMGHGRSENPAHAAMVDKIVAHNNSKLR
>NC_006370.1|WP_011219672.1|3538788_3539208_-|cell-shape-determining-protein
MLPTITASFVNLRLHPSQKILAALSALYLGVAIALFVPLLTSWLPLIIVTFLLECLWIEWLERYQHYYRQQGNLSITVCGAANWQQQKWQINNIKVVTRWFILFRMQHAEEVIWVCVSHDACKDEEYRALAMLCHIARL
>NC_006370.1|WP_041394517.1|3537051_3538674_+|L-aspartate-oxidase
MNKNREHHCDVLVIGSGAAGLTLALRLAPLSKVVVVSKGTRSEGATYYAQGGIAAVFDESDSIESHIEDTQIAGAHLCDDNVVRFIAENAKESVQWLIDGGVPFDREEQDNDDETPRYHLTREGGHSHRRILHAADATGMAMQNSLQDNVHNHPNIEVLERHNALDLITHQKLGNDDTPNRVLGAYVWNRNKEVVETVHAKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQFHPTCLFHPDARNYLLTEALRGEGAYLRRPDGSRFMSDFDERGELAPRDVVARAIDFEMKRLGADCMFLDISHKSDDFITKHFPTIYEKLLTFNIDITQEPIPIVPAAHYTCGGVMVDTEGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECVVYATSAAESISSKLDNVSMPISLPHWDESQVNCSDEEVVIQHNWHELRLFMWDYVGIVRSTKRLERAMRRIQLLKQEIDEYYGNFRVSNNLLELRNLVQVAELIVRCALERKESRGLHFTLDYPELKENSGPTIQTPDQPC
>NC_006370.1|WP_006232563.1|3535633_3536212_-|RNA-polymerase-sigma-factor-RpoE
MSEQQTDQVLIERVQRGDKQAFNLLVIKYQNKVCNLVARYVSNSGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLVAQGRRPPASDVDAEDAEYYETGGALKEISNPENQMLSEELKRVVFGTIESLPEDLKTAISLRELDGLSYEDIAEIMDCPVGTVRSRIFRAREAVEKRIRPLMQR
>NC_006370.1|WP_011219669.1|3534910_3535609_-|anti-sigma-E-factor
MADKEKISALVDGEELDQSIINALTVDKESEQSWHDFNLIGDVIRGDAPQCKEWNIAGCVALALDNEPAHVGLTNFSAESDVIAPVVDTPVIDIRTAQHTESQPTPRQAKRTLPAWLTQLGQVAIAASVSLAVIVGVQQYNGGDDALVADATNSQLPVLQTIPFGGKAEPVSLTRDSVRTGAHNSAPSEAQLMEQRRRINAMLQDYELQLRFNAEDGSIDRTLLEANSSVAD
>NC_006370.1|WP_011219668.1|3533915_3534911_-|sigma-E-factor-regulatory-protein-RseB
MIKILVGAVTLVSLLMPIQASAEEPIVSAEALLHQMNEASRDLSYELSYILIKKNSIEPLRYRHAVEDGKTYAHLIYLSGPPREVIQRGREVSYFEPGLDPFTIDSNKMVAPLPPVMKTNIHELSDFYDFISMGRAREVGVACDVIRVAPKDGTRYSYLLWIDTRSHLVMRADLLDRDGEPLEQYRAVSYVVNQKVGEVLKNLSTVDLPAVVQLPPQPQADLGWSVNWLPQGFESVSRNRHRLVLTERPVESKMYSDGLFSLSIYVSDADNYTVREQLVRQGRRTLHSNVVGDKEVTVVGDIPPATARRIAESITFAKAPVVIPTAEGTKP
>NC_006370.1|WP_011219667.1|3533421_3533919_-|SoxR-reducing-system-RseC-family-protein
MMRTLATVIAVEQGSVTVSCQQQTSCGHCASRDNCGTGIVTKAIPGRAHQVTLATDKPLTIGEIVEIGLSEKSMLSSALLVYIVPLLFLVLGAVVGQWWFVDLAGTSELGVIITSMVSAAIGLLLARQYAKRLDGNSDYEPSLIRVLGQPLSSDKMINAASKDSE
>NC_006370.1|WP_011219666.1|3531551_3533345_-|elongation-factor-4
MKHIRNFSIIAHIDHGKSTLSDRLIQVCGGLSNREMSAQVLDSMDLERERGITIKAQSVTLDYTAKDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPILNKIDLPAADPERVAEEIEDIVGIDAIDATRCSAKTGLGVEDVLENIVAAIPPPEGDPEGPLQALIIDSWFDNYLGIVSLVRVKNGSLKKNAKIKMMSTGQVWNIDRLGIFTPKQIDTTELNTGEVGWVVCGIKDILGAPVGDTITTAKDGSETPLPGFKKVKPQVYAGLFPISSDDYENFRDALGKLSLNDASLFYEPESSTALGFGFRCGFLGMLHMEIIQERLEREYNLELITTAPTVVYEVETTRNGTVYVDSPSKLPAVNDIEVIGEPIARCNILVPSEYLGNVITLCIEKRGMQVDMIYHGNQVALTYDIPMSEVVLDFFDRLKSTSRGYASLDYNFQRYEPSNMVRVDVMINGERVDALAIITHKDHANGRGRDLVDKMKEFIPRQMFDIAIQAAIGGMIIARATVKQLRKNVIAKCYGGDISRKKKLLQKQKAGKKRMKQIGNVELPQEAFLAILHVGKK
>NC_006370.1|WP_041394518.1|3543545_3544256_+|AHH-domain-containing-protein
MNLTMTPDASESDFIDGEIEKKNYRRRWVTNVKIIPSHPFNHGIHMDTHHLISKEAVNISKLGKLLVKKGFDINDLNNLVGFPATLPGACQLKTQLHRGDHIFKPPGEEPYHDEVSNALLEVIEKIEQCYGKTRQKEQSDEIHQLLNPIAKSILKQVTRFKLPLTELYLNFKPSNCLGCGNCFEVKDARFNATACEHDREHYKQLHVSGIDYRYQSSNAHKKIIMYSESWTPKVTK
>NC_006370.1|WP_011219678.1|3544252_3544867_+|hypothetical-protein
MNDFENEYYLVFKKFDPQTLYLTALQKSADRRYTYKKLRFGDEPLFFENGYKEQDKARGVTRFYSKAHINISTLVVRDEIYEDIKGFNIRYLQLYPSVIIDDDENYHEGYWTFNYYDRIDCVDFDLSTVEDYDPDDDRHDVEKFVFKPDVLAAIPEEERLMFKPEKINKGYNIVHKKIVDIFNKHNVDTLRFIKVADWEYGKQF
>NC_006370.1|WP_011218608.1|3545443_3546730_+|IS4-like-element-ISPpr4-family-transposase
MTMTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQSWASTQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAHDWCHINFAKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNGIYQCRSQELQPKQSHLDSLFDSIHWQEQLHLDKPLVHVVDREADSAKDLRRLGSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYLFVGETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDVDATEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVATTLIFKLYSDSSDEANEFKGFLVKLSGRLTKRTKPVTQPSLLAGLWVFLQMCEVLDTYTMDEINAMRQIASSFFAQSV
>NC_006370.1|WP_086000055.1|3547418_3548863_+|IS66-family-transposase
MKKKLSFKEEPPTVNSLNEAQALIQELWEKLRHYEDKLSTSSKNSSKSPSSDGPKERAERKKPESPRSGNKIGAQQGHEGKRRKLSKLKKTDTVVPCVPCVPSSLCPCCGDSHIAINQKPSYRHQVHEIPEPIVNITEYQVFHGRCQNCQTSVKGKRPQDTPQGIMGPNLMSYIALLAGQFHLSVRKIQELLKLQLGTSFSTGAISEAQGKVSSMLTPLHQAVRDAIQKAPMVHIDETSHIRNGESSLRWCWLMSSDDWVYERVLFSRSTHSAKVMLNEKFAGVVISDQCASYNWLNPEKHQFCLGHLKRNLQQMADYSGGGLTAFIGKRLTLLINMIFRTQHRYEEENISAEIYFRRMKRLRKSLTRWLHKGADVTTSRYSGRCKFILKHEVSLWVFLTAPLTIPLTNNEAERRLRGSVIMRKISFGTSSDRGDKFRGRIHTLVETCKKRSMSPFIALQQIVNAVVKKQPYPDIFNPCSG
>NC_006370.1|WP_041394520.1|3549039_3549459_+|hypothetical-protein
MPHAQTQIASSHSHHAISCNHCDYHVTNIQPQVYVIDPNGKRISTDSISQSMTALYGINQQVVEAVMTGKNEDDNAKALHQMVLTLSGKLYRHNCQQCANQFSLNPQKDNHACPHCWSQSIVQMSGGEQCPKCQQGELN
>NC_006370.1|WP_011219682.1|3549603_3550563_+|LysR-family-transcriptional-regulator
MESKSKDINWRGVDLNLLVAFSALMETRSVTKAAAKLSIGQSAMSHNLSRLRLLLNDPLFERQGHQMIATQRAIELSSTIENILNLVMTQVLRPDDFDSQHYQGTFRIGLTDYAELLFAPALFDAISRLAPKCQLSFCNVDRHNYINSFNDKNLDVVIGSMTDLPKELESQYLYTEDHVCLFDQSATGLTVPVSLARYIITPQALVSPDGKLASPIDNQLQEQGFKRHIALGSSNFLTIRHLLKDRNLLCVVSRLMAKIDIFNDNLTQCKPPVDIPDFHINMLWLRRNSTHQRMEWLCQIVSETVSERVASLREKSEAR
>NC_006370.1|WP_011219683.1|3550707_3550902_-|(Na+)-NQR-maturation-NqrM
MTFVLTMAVFLLVIAAMAIGWVVKKKTISGSCGGLANVGVDKECDCDEPCDTHKFYQIQEPSVK
>NC_006370.1|WP_011219684.1|3550898_3551375_-|hypothetical-protein
MCIAIAITLRSQVAGHFGKAAAFMVYDSQGQFIERIENTGSKELGCKHKKVIQRQLSELGVKEIVLGNVGQRSLGRLLNAGFSVTKVPQRSSIDAVMTGKVEKEALTTAEQGRPCKRDKGDCGCGCAGKKKPVPIKIGTTMNRKSTIQGLTKIGGFTL
>NC_006370.1|WP_006232552.1|3551376_3551754_-|DUF134-domain-containing-protein
MGRPKIQRKINCRPAYSCFKPNGIPMTELTSIVLADDELEALRLVDMNGMQQLAAAHELGVSRQTLGSIVSRARQKVAQALVTGQAIDLQGTHLPQAQRQAKTVFSSSITQPKNVEIVETETEEH
>NC_006370.1|WP_011219685.1|3552239_3552443_+|DUF1107-domain-containing-protein
MRMFKRYLPKLIAKHVSRLFSGRIYIDGRGGYQFDKGMLLVPVKAQERHYKTVNEVNFEIKRLKEVY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	MT713136	Aeromonas phage AP1, complete genome	233944-233995	9	0.827
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NC_022042	Paracoccus aminophilus JCM 7686 plasmid pAMI1, complete sequence	31060-31111	9	0.827
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	831934-831985	9	0.827
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_LR134417	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8	31797-31848	10	0.808
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP022192	Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence	63823-63874	10	0.808
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	MN693801	Marine virus AFVG_250M774, complete genome	10548-10599	10	0.808
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	274096-274147	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	476170-476221	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	926011-926062	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	734191-734242	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	592027-592078	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	719003-719054	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	55917-55968	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	472158-472209	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	101012-101063	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP022417	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-2, complete sequence	159743-159794	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	108312-108363	11	0.788
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	540525-540576	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	952067-952118	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1468803-1468854	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP049030	Fluviibacterium aquatile strain SC52 plasmid pSC52_2, complete sequence	16787-16838	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP025809	Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence	356712-356763	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	233214-233265	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	44036-44087	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	535877-535928	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP028919	Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence	235398-235449	12	0.769
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP018080	Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence	55077-55128	13	0.75
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP035512	Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence	10528-10579	13	0.75
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	55341-55392	14	0.731
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NC_008042	Ruegeria sp. TM1040 plasmid unnamed, complete sequence	12265-12316	14	0.731
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	177113-177164	14	0.731
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	507572-507623	14	0.731
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	623824-623875	14	0.731
NC_006370_1	1.1\|3457177\|52\|NC_006370\|CRISPRCasFinder	3457177-3457228	52	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1415025-1415076	15	0.712

1. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to MT713136 (Aeromonas phage AP1, complete genome) position: , mismatch: 9, identity: 0.827

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccacctgagctacagacccacttcgtgtactgtc	Protospacer
**************************************.** .  . *  **

2. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NC_022042 (Paracoccus aminophilus JCM 7686 plasmid pAMI1, complete sequence) position: , mismatch: 9, identity: 0.827

atcaggggtgcgctctaaccacctgagctacagacccatt-tgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccattctcaggaccggt-	Protospacer
****** ************************ ******** * *.  .** *

3. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.827

atcaggggtgcgctctaaccacctgagctacagacccat---ttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccacctgagctacaggcccgtcgccagcatcccg---	Protospacer
*********************************.***.*   . * ***.**

4. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_LR134417 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8) position: , mismatch: 10, identity: 0.808

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccaactgagctacagacccaagtcaagttaagac	Protospacer
********************* ****************  * ** .* .  *

5. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.808

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc----	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgaccca----aatcacatggcgct	Protospacer
****** ************************ ******    **** *.*

6. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to MN693801 (Marine virus AFVG_250M774, complete genome) position: , mismatch: 10, identity: 0.808

atcaggggtgcgctctaaccacctgagctacagacccat--ttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccgactgagctacagacccgcggtctaattttgt--	Protospacer
********************. ***************..  *. ***.*.**

7. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccattcttgttagggcc	Protospacer
****** ************************ ********.  .*.  * .*

8. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccattcttgttagggcc	Protospacer
****** ************************ ********.  .*.  * .*

9. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccattcttgttagggcc	Protospacer
****** ************************ ********.  .*.  * .*

10. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccatacacagaccggac	Protospacer
****** ************************ ******* .. *  .**  *

11. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccacatgccgtccgctg	Protospacer
****** ************************ ******. **   ..**.*

12. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccacatgccgtccgctg	Protospacer
****** ************************ ******. **   ..**.*

13. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccacatgccgtccgctg	Protospacer
****** ************************ ******. **   ..**.*

14. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccacatgccgtccgctg	Protospacer
****** ************************ ******. **   ..**.*

15. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccacatgccgtccgctg	Protospacer
****** ************************ ******. **   ..**.*

16. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP022417 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-2, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc----	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgaccc----ggttttcattttgcg	Protospacer
****** ************************ *****    *. *.**.**.

17. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.788

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc---	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccgc---aagccggtcccgg	Protospacer
****** ************************ *****..   ** *. **.*

18. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccataaggccgtagccg	Protospacer
****** ************************ *******  *. . * *..

19. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc-	CRISPR spacer
atcaggggtgcgctctaaccaactgagctacaggcccaact-cgccatgcccg	Protospacer
********************* ***********.**** .*  ..* .*..*

20. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc-	CRISPR spacer
atcaggggtgcgctctaaccaactgagctacaggcccaact-cgccatgcccg	Protospacer
********************* ***********.**** .*  ..* .*..*

21. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP049030 (Fluviibacterium aquatile strain SC52 plasmid pSC52_2, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccaaaacagaccggtag	Protospacer
****** ************************ ******    *. *. **

22. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP025809 (Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagcgtagttcgcttt	Protospacer
****** ************************ ****** .  *.*..  **.

23. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagaacagaccggtag	Protospacer
****** ************************ ******    *. *. **

24. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagaccca-----tttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccaactgagctacaggcccgtagtcttcgaggtt-----	Protospacer
********************* ***********.***.     **.**. .*

25. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagaccca-----tttgaatctcgttc	CRISPR spacer
atcaggggtgcgctctaaccaactgagctacaggcccgtagtcttcgaggtt-----	Protospacer
********************* ***********.***.     **.**. .*

26. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP028919 (Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.769

atcaggggtgcgctctaaccacctgagctacagacccatt-----tgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccgtcactggtggagcc-----	Protospacer
****** ************************ *****.*.     **.* *.

27. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP018080 (Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence) position: , mismatch: 13, identity: 0.75

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccaaacgggtggtaacc	Protospacer
****** ************************ ******  .*..*  .. .*

28. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 13, identity: 0.75

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc----	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccgcaagg----cgtctccgg	Protospacer
****** ************************ *****..  *.    ***..

29. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 14, identity: 0.731

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccatgcaggccggtagg	Protospacer
****** ************************ ******* .....*

30. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NC_008042 (Ruegeria sp. TM1040 plasmid unnamed, complete sequence) position: , mismatch: 14, identity: 0.731

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagacagaccggtagg	Protospacer
****** ************************ ******  ...*.*

31. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 14, identity: 0.731

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagacagaccggtagg	Protospacer
****** ************************ ******  ...*.*

32. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 14, identity: 0.731

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagacagaccggtagg	Protospacer
****** ************************ ******  ...*.*

33. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 14, identity: 0.731

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccagacagaccggtagg	Protospacer
****** ************************ ******  ...*.*

34. spacer 1.1|3457177|52|NC_006370|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 15, identity: 0.712

atcaggggtgcgctctaaccacctgagctacagacccatttgaatctcgttc	CRISPR spacer
atcaggcgtgcgctctaaccacctgagctaccgacccggacagaccggtagg	Protospacer
****** ************************ *****.  ...*.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

694081 : 764453

Xanthomonas_phage(16.67%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041394637.1\|694081_694696_-\|transposase	transposase	NA	NA	NA	NA
WP_041393894.1\|694971_695937_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_011217405.1\|696111_698463_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_011217406.1\|698609_699989_+	DNA repair protein RadA	NA	NA	NA	NA
WP_011217407.1\|700196_701189_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.4e-17	40.7
WP_011217408.1\|701205_701586_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_011217409.1\|701866_703534_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.5e-38	27.1
WP_011217410.1\|703666_705601_+	murein transglycosylase	K4NWI2	Pseudomonas_phage	4.8e-17	41.0
WP_011217411.1\|705721_706033_+	trp operon repressor	NA	NA	NA	NA
WP_011217412.1\|706145_706670_-	inosine/xanthosine triphosphatase	NA	NA	NA	NA
WP_041393895.1\|707121_707760_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011217414.1\|708539_709352_-	response regulator transcription factor	NA	NA	NA	NA
WP_011217415.1\|709409_710447_-	histidine kinase	NA	NA	NA	NA
WP_041393896.1\|710446_711862_-	hypothetical protein	NA	NA	NA	NA
WP_041394639.1\|711864_712635_-	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
WP_011217418.1\|712681_714016_-	ABC transporter permease	NA	NA	NA	NA
WP_011217419.1\|714003_714702_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-38	41.3
WP_011217420.1\|714788_715487_-	hypothetical protein	NA	NA	NA	NA
WP_041393897.1\|715722_716688_+	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_011217422.1\|716759_717380_-	hypothetical protein	NA	NA	NA	NA
WP_011217423.1\|717588_718539_+	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	1.2e-21	48.7
WP_011217424.1\|718442_718889_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_011217425.1\|719069_719549_+	cupin domain-containing protein	A0A291ATU0	Pandoravirus	2.1e-14	36.3
WP_049788903.1\|719612_721679_-	serine/threonine protein kinase	A0A2I2L576	Orpheovirus	1.6e-13	30.4
WP_011217427.1\|721944_723255_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_011217428.1\|723257_723725_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011217429.1\|723880_725206_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011217430.1\|725232_726552_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_011217431.1\|726551_730097_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_041393899.1\|730078_730765_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_041394643.1\|730764_731589_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_041394644.1\|731618_732722_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_011217435.1\|732757_733291_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011217436.1\|733290_734781_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011217437.1\|734841_736383_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011217438.1\|736387_737182_+	hypothetical protein	NA	NA	NA	NA
WP_041393900.1\|737204_737672_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_011217440.1\|737673_739503_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_172635950.1\|739499_740471_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_041393902.1\|740491_743080_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.2e-89	31.2
WP_011217443.1\|743311_743791_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011217444.1\|743849_745700_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.0e-32	28.1
WP_011217445.1\|745738_746029_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_041393903.1\|746035_747007_+	hypothetical protein	NA	NA	NA	NA
WP_011217447.1\|746997_751056_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	8.6e-32	55.9
WP_041393904.1\|751062_751689_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_011217449.1\|751806_753405_+	RHS repeat-associated core domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	8.3e-31	56.5
WP_011217450.1\|753397_753751_+	hypothetical protein	NA	NA	NA	NA
WP_049788905.1\|754800_755766_+	hypothetical protein	NA	NA	NA	NA
WP_011217453.1\|755771_756992_+	EAL domain-containing response regulator	NA	NA	NA	NA
WP_157134281.1\|757014_757287_+	hypothetical protein	NA	NA	NA	NA
WP_011217454.1\|757276_759340_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.6e-10	22.6
WP_011217455.1\|759399_761112_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_076612114.1\|763166_764453_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

830880 : 839010

Mycoplasma_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011217506.1\|830880_832095_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.8e-33	40.2
WP_006230804.1\|832141_832528_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	79.0
WP_011217507.1\|832546_832870_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-22	48.6
WP_011217508.1\|832955_833471_+	co-chaperone HscB	NA	NA	NA	NA
WP_011217509.1\|833509_835363_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	1.2e-102	39.1
WP_011217510.1\|835365_835704_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011217511.1\|835803_836004_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011217512.1\|836330_837617_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	5.1e-31	37.3
WP_011217513.1\|837732_839010_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.1e-33	34.5

DBSCAN-SWA_3

1492517 : 1512574

Leptospira_phage(57.14%)

transposase,integrase

attL 1492496:1492555|attR 1512537:1514937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1492496:1492555	attL	NA	NA	NA	NA
WP_011218058.1\|1492517_1494062_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.5e-65	32.3
WP_011218059.1\|1494170_1494518_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_011218060.1\|1494517_1494814_-	hypothetical protein	NA	NA	NA	NA
WP_157134295.1\|1494950_1495145_+	hypothetical protein	NA	NA	NA	NA
WP_011218062.1\|1495305_1495557_+	hypothetical protein	NA	NA	NA	NA
WP_011218063.1\|1495656_1496862_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_041394016.1\|1496865_1497132_-	hypothetical protein	NA	NA	NA	NA
WP_011218608.1\|1497258_1498545_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_157134296.1\|1498549_1498915_-	hypothetical protein	NA	NA	NA	NA
WP_157134297.1\|1499361_1499556_+	hypothetical protein	NA	NA	NA	NA
WP_011218068.1\|1500093_1500444_+	hypothetical protein	NA	NA	NA	NA
WP_011218069.1\|1500789_1501041_+	hypothetical protein	NA	NA	NA	NA
WP_011218070.1\|1501081_1501642_+	N-acetylmuramoyl-L-alanine amidase	A0A2I7RHK5	Vibrio_phage	2.4e-78	77.2
WP_011218071.1\|1501638_1502115_+	hypothetical protein	A0A2I7RHR1	Vibrio_phage	1.9e-71	85.3
WP_011218072.1\|1502597_1503158_+	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_041394020.1\|1503459_1503666_+	hypothetical protein	NA	NA	NA	NA
WP_011218608.1\|1503706_1504993_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_049788922.1\|1505018_1505711_+	HNH endonuclease	NA	NA	NA	NA
WP_011218074.1\|1505988_1507041_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011218075.1\|1507037_1507925_-\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	2.1e-20	26.2
WP_157134299.1\|1507983_1508124_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_041394022.1\|1508326_1508872_-	hypothetical protein	NA	NA	NA	NA
WP_011218077.1\|1508921_1509374_-	hypothetical protein	NA	NA	NA	NA
WP_011218060.1\|1510277_1510574_+	hypothetical protein	NA	NA	NA	NA
WP_011218059.1\|1510573_1510921_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_011218058.1\|1511029_1512574_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.5e-65	32.3
1512537:1514937	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1519575 : 1561864

Burkholderia_phage(20.0%)

tail,capsid,transposase,protease,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041394026.1\|1519575_1520790_+	DUF3440 domain-containing protein	A0A068F1U8	Mycobacterium_phage	4.0e-78	35.7
WP_081470330.1\|1520789_1521419_+	ParB-like nuclease domain-containing protein	A0A0F7L444	uncultured_marine_virus	6.5e-40	51.2
WP_011218087.1\|1521564_1521933_-	VOC family protein	NA	NA	NA	NA
WP_011218089.1\|1522503_1522824_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	5.5e-11	47.2
WP_041394028.1\|1522996_1523425_+	hypothetical protein	NA	NA	NA	NA
WP_041394030.1\|1523427_1525095_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	2.0e-160	52.0
WP_041394032.1\|1526380_1527160_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	3.8e-45	46.8
WP_011218094.1\|1527173_1528436_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	3.0e-100	48.3
WP_041394034.1\|1528453_1528657_+	hypothetical protein	NA	NA	NA	NA
WP_011218095.1\|1528662_1528980_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_041394037.1\|1528979_1529300_+\|head	phage head closure protein	A0A088F713	Idiomarinaceae_phage	5.9e-05	28.4
WP_011218097.1\|1530439_1530790_+	hypothetical protein	NA	NA	NA	NA
WP_011218098.1\|1531249_1531879_+	LysE family translocator	NA	NA	NA	NA
WP_172635948.1\|1532345_1533380_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	9.5e-12	66.0
WP_011218099.1\|1533579_1534059_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_011218100.1\|1534155_1534443_+	CDGSH iron-sulfur domain-containing protein	NA	NA	NA	NA
WP_011218101.1\|1534583_1535951_-	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_011218102.1\|1536540_1537413_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041394695.1\|1537547_1538771_+	MFS transporter	NA	NA	NA	NA
WP_011218104.1\|1538793_1540734_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-31	29.1
WP_011218105.1\|1541347_1542559_-	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_011218106.1\|1542555_1543884_-	glycerol-3-phosphate dehydrogenase subunit GlpB	NA	NA	NA	NA
WP_011218107.1\|1543880_1545581_-	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA
WP_011218108.1\|1545843_1546455_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_172635969.1\|1546568_1547603_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011218111.1\|1548408_1549080_+	hypothetical protein	NA	NA	NA	NA
WP_011218112.1\|1549217_1549406_+	DUF4250 domain-containing protein	NA	NA	NA	NA
WP_011218113.1\|1549495_1550407_-	HTH-type transcriptional regulator MetR	NA	NA	NA	NA
WP_011218114.1\|1550661_1552962_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_011218115.1\|1553113_1553551_-	META domain-containing protein	NA	NA	NA	NA
WP_011218116.1\|1553908_1555552_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_011218117.1\|1555973_1556351_-	hypothetical protein	NA	NA	NA	NA
WP_041394047.1\|1556910_1557762_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_157134301.1\|1558283_1558943_+	DUF2974 domain-containing protein	A0A2P0VP29	Tetraselmis_virus	3.3e-10	31.7
WP_011220614.1\|1560253_1561864_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1728122 : 1817142

Sulfolobus_monocaudavirus(14.29%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011218258.1\|1728122_1728719_-\|tRNA	tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY	NA	NA	NA	NA
WP_011218259.1\|1729068_1730538_-	peptide MFS transporter	NA	NA	NA	NA
WP_041393917.1\|1730863_1731292_+\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011218261.1\|1731485_1732973_-	MFS transporter	NA	NA	NA	NA
WP_011218262.1\|1733360_1734134_+	hypothetical protein	NA	NA	NA	NA
WP_041394707.1\|1734169_1736548_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	2.1e-38	26.2
WP_011218264.1\|1736701_1737013_-	hypothetical protein	NA	NA	NA	NA
WP_041394134.1\|1737290_1737542_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_011218266.1\|1737644_1737923_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_011218267.1\|1738245_1740393_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_011218268.1\|1740501_1741668_-	beta-aspartyl-peptidase	NA	NA	NA	NA
WP_011218428.1\|1743511_1744543_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041394709.1\|1744988_1746752_-	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.5e-97	40.5
WP_011218272.1\|1747056_1748124_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_011218273.1\|1748134_1748509_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_011218274.1\|1748525_1750298_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_011218275.1\|1750420_1750915_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011218276.1\|1751223_1751922_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_041394138.1\|1752199_1753390_+	Bcr/CflA family multidrug efflux MFS transporter	NA	NA	NA	NA
WP_011218278.1\|1753483_1754143_+	DUF2913 family protein	NA	NA	NA	NA
WP_157134308.1\|1754348_1754519_-	hypothetical protein	NA	NA	NA	NA
WP_011218279.1\|1754518_1755067_-	hypothetical protein	NA	NA	NA	NA
WP_011218281.1\|1756241_1756895_+	DUF2913 family protein	NA	NA	NA	NA
WP_011218282.1\|1757232_1758825_+	BCCT family transporter	NA	NA	NA	NA
WP_041394141.1\|1759025_1760486_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_011218284.1\|1760715_1762083_+	MATE family efflux transporter	NA	NA	NA	NA
WP_041394144.1\|1762367_1763039_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-26	36.8
WP_011218286.1\|1763019_1765479_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_011218287.1\|1765478_1766570_+	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_011218288.1\|1766604_1767900_+	amidohydrolase	NA	NA	NA	NA
WP_172635972.1\|1768318_1770559_+	FUSC family protein	NA	NA	NA	NA
WP_041394147.1\|1770570_1772229_+	TolC family protein	NA	NA	NA	NA
WP_086000062.1\|1772234_1772438_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_041394710.1\|1772455_1773337_+	HlyD family secretion protein	NA	NA	NA	NA
WP_049788924.1\|1773385_1774093_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_011218294.1\|1774094_1775216_+	AI-2E family transporter	NA	NA	NA	NA
WP_041394149.1\|1775336_1777304_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
WP_011218297.1\|1778249_1779035_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-14	28.5
WP_011218298.1\|1779119_1781219_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_041394151.1\|1781651_1783478_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.6e-32	26.5
WP_011220614.1\|1783747_1785358_-\|transposase	transposase	NA	NA	NA	NA
WP_011218302.1\|1788070_1789684_+	dynamin family protein	NA	NA	NA	NA
WP_011218303.1\|1789748_1790732_-	catabolite repressor/activator	NA	NA	NA	NA
WP_011218304.1\|1791072_1792191_+	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_086000047.1\|1792190_1793222_+	1-phosphofructokinase	NA	NA	NA	NA
WP_011218306.1\|1793243_1794983_+	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_011218307.1\|1795431_1795827_+	hypothetical protein	NA	NA	NA	NA
WP_011218308.1\|1795930_1797337_-	amino acid permease	NA	NA	NA	NA
WP_011218309.1\|1797537_1798008_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_011218310.1\|1799170_1800142_+	hypothetical protein	NA	NA	NA	NA
WP_081470334.1\|1800146_1801433_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_081470335.1\|1801872_1803159_+\|transposase	transposase	NA	NA	NA	NA
WP_086000048.1\|1803172_1803583_+	hypothetical protein	NA	NA	NA	NA
WP_011218314.1\|1803579_1805532_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_011218315.1\|1805868_1810845_+	AAA family ATPase	NA	NA	NA	NA
WP_011218316.1\|1810841_1812263_+	hypothetical protein	NA	NA	NA	NA
WP_011218058.1\|1815597_1817142_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.5e-65	32.3

DBSCAN-SWA_6

1840161 : 1881802

Leptospira_phage(33.33%)

transposase,integrase,tRNA

attL 1840129:1840142|attR 1864197:1864210

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1840129:1840142	attL	NA	NA	NA	NA
WP_011219045.1\|1840161_1841706_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.9e-65	32.5
WP_041394173.1\|1842527_1842740_-	hypothetical protein	NA	NA	NA	NA
WP_011218337.1\|1842754_1843621_-	radical SAM protein	NA	NA	NA	NA
WP_011218338.1\|1843769_1844474_-	hypothetical protein	NA	NA	NA	NA
WP_011218339.1\|1844464_1844809_-	hypothetical protein	NA	NA	NA	NA
WP_011218340.1\|1844805_1845300_-	hypothetical protein	NA	NA	NA	NA
WP_041394177.1\|1845609_1846410_-	HAD family hydrolase	NA	NA	NA	NA
WP_011218342.1\|1846886_1847345_+	hypothetical protein	NA	NA	NA	NA
WP_011218343.1\|1847489_1847921_+	hypothetical protein	NA	NA	NA	NA
WP_011218344.1\|1848094_1850014_-	flagellin	NA	NA	NA	NA
WP_157134310.1\|1850091_1850292_+	hypothetical protein	NA	NA	NA	NA
WP_011218346.1\|1850540_1851158_+	hypothetical protein	NA	NA	NA	NA
WP_011218347.1\|1851154_1851715_+	hypothetical protein	NA	NA	NA	NA
WP_011218348.1\|1851714_1853085_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011218349.1\|1853090_1854014_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_011218350.1\|1854010_1855744_+	TniQ family protein	NA	NA	NA	NA
WP_081470336.1\|1859284_1860571_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041393917.1\|1862235_1862664_+\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011218357.1\|1862895_1863465_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_041394718.1\|1863724_1864084_+	hypothetical protein	NA	NA	NA	NA
WP_011218359.1\|1864203_1864557_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
1864197:1864210	attR	NA	NA	NA	NA
WP_157134366.1\|1864666_1865128_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157134311.1\|1865299_1865806_-\|transposase	transposase	NA	NA	NA	NA
WP_011218362.1\|1866097_1866811_+	hypothetical protein	NA	NA	NA	NA
WP_011220284.1\|1867375_1868662_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041394182.1\|1868971_1869220_-	hypothetical protein	NA	NA	NA	NA
WP_041394184.1\|1869202_1869730_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	9.1e-11	25.0
WP_041394186.1\|1869876_1870119_+	hypothetical protein	NA	NA	NA	NA
WP_011217584.1\|1870173_1871124_-\|transposase	IS1595-like element ISPpr6 family transposase	NA	NA	NA	NA
WP_081470338.1\|1871642_1872929_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_081470339.1\|1873011_1873623_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_011218367.1\|1874052_1874385_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_011218369.1\|1874782_1875406_+	hypothetical protein	NA	NA	NA	NA
WP_011218370.1\|1875678_1876620_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_011218371.1\|1876738_1877068_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_049788928.1\|1878849_1879578_+	hypothetical protein	NA	NA	NA	NA
WP_011218375.1\|1879599_1879881_-	hypothetical protein	NA	NA	NA	NA
WP_011218376.1\|1880242_1880686_+	CopD family protein	NA	NA	NA	NA
WP_011218377.1\|1880785_1881802_+\|transposase	IS110-like element ISPpr8 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1923001 : 1957826

Sulfolobus_monocaudavirus(33.33%)

lysis,transposase,integrase

attL 1896140:1896155|attR 1955108:1955123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1896140:1896155	attL	NA	NA	NA	NA
WP_041393917.1\|1923001_1923430_+\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011218397.1\|1923648_1924122_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_011218398.1\|1924382_1925891_+	peptide MFS transporter	NA	NA	NA	NA
WP_011218399.1\|1925983_1927474_-	hypothetical protein	NA	NA	NA	NA
WP_011218400.1\|1927751_1928123_+	hypothetical protein	NA	NA	NA	NA
WP_011218401.1\|1928127_1928565_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_006231697.1\|1928826_1929120_+	hypothetical protein	NA	NA	NA	NA
WP_011218403.1\|1929358_1930000_+	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_011218404.1\|1930186_1931362_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_041394194.1\|1931774_1932182_+	hypothetical protein	NA	NA	NA	NA
WP_011218406.1\|1932304_1933276_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_011218407.1\|1933614_1934511_-	DMT family transporter	NA	NA	NA	NA
WP_011218408.1\|1934680_1935568_-	cytidine deaminase	NA	NA	NA	NA
WP_011218409.1\|1935779_1936463_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_011218410.1\|1936462_1936801_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_011218411.1\|1936944_1937469_-	hypothetical protein	NA	NA	NA	NA
WP_011218412.1\|1937768_1939193_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_011218413.1\|1939370_1940546_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	3.6e-100	48.2
WP_011218414.1\|1940779_1941061_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011218415.1\|1941057_1941357_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011218074.1\|1941597_1942650_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_157134313.1\|1943533_1943725_+	hypothetical protein	NA	NA	NA	NA
WP_172635954.1\|1944297_1944888_+	hypothetical protein	NA	NA	NA	NA
WP_041394200.1\|1945083_1946694_-\|transposase	transposase	NA	NA	NA	NA
WP_172635969.1\|1947211_1948246_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_086000049.1\|1948719_1950293_-\|transposase	IS3-like element ISPpr7 family transposase	U5P429	Shigella_phage	9.4e-11	30.8
WP_011218423.1\|1951526_1951832_+	ATP-dependent helicase	NA	NA	NA	NA
WP_011218424.1\|1951854_1952730_-	hypothetical protein	NA	NA	NA	NA
WP_081470341.1\|1953603_1954890_+\|transposase	transposase	NA	NA	NA	NA
WP_011218426.1\|1955048_1956059_+	hypothetical protein	NA	NA	NA	NA
1955108:1955123	attR	NA	NA	NA	NA
WP_011218427.1\|1956065_1956422_+	hypothetical protein	NA	NA	NA	NA
WP_011218428.1\|1956794_1957826_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2011743 : 2088471

Catovirus(14.29%)

transposase,protease,integrase

attL 2013485:2013507|attR 2099557:2099579

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011220614.1\|2011743_2013354_-\|transposase	transposase	NA	NA	NA	NA
2013485:2013507	attL	NA	NA	NA	NA
WP_081470342.1\|2014910_2018825_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	2.0e-54	27.7
WP_041394229.1\|2019052_2021296_+	U32 family peptidase	Q6DW11	Phage_TP	5.4e-20	28.4
WP_157134369.1\|2021572_2021977_+	biphenyl 2,3-dioxygenase	NA	NA	NA	NA
WP_041394232.1\|2022009_2022198_+	hypothetical protein	NA	NA	NA	NA
WP_011218475.1\|2022423_2023812_-	PTS glucose transporter subunit IIBC	A0A2I7SAJ6	Vibrio_phage	9.1e-10	50.7
WP_011218478.1\|2025356_2026574_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_011218479.1\|2026906_2029534_+	aminopeptidase N	NA	NA	NA	NA
WP_081470343.1\|2029651_2029870_+	DUF2835 domain-containing protein	NA	NA	NA	NA
WP_011218481.1\|2030253_2035083_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_011218482.1\|2035404_2036415_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_011218483.1\|2036658_2037198_+	cell division protein ZapC	NA	NA	NA	NA
WP_011218484.1\|2038188_2040327_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_041394732.1\|2040330_2040651_+	glutaredoxin family protein	NA	NA	NA	NA
WP_011218486.1\|2040637_2042566_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.2e-53	29.2
WP_011218487.1\|2042565_2044626_+	DUF3466 family protein	NA	NA	NA	NA
WP_041394235.1\|2044794_2044968_+	ribosome modulation factor	NA	NA	NA	NA
WP_011218488.1\|2045255_2045771_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_011218489.1\|2045839_2047588_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_011218490.1\|2047782_2048229_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_011218491.1\|2048323_2048629_+	DUF3634 family protein	NA	NA	NA	NA
WP_011218492.1\|2048715_2049111_+	DNA-binding protein	NA	NA	NA	NA
WP_011218493.1\|2049541_2049787_-	hypothetical protein	NA	NA	NA	NA
WP_011218494.1\|2050077_2050800_+	flagellar brake protein	NA	NA	NA	NA
WP_041394237.1\|2051026_2051473_-	hypothetical protein	NA	NA	NA	NA
WP_041394239.1\|2051465_2052230_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157134370.1\|2052331_2052886_-	hypothetical protein	NA	NA	NA	NA
WP_041394240.1\|2053062_2053407_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_011218499.1\|2053491_2054778_+\|transposase	transposase	NA	NA	NA	NA
WP_011218500.1\|2054979_2055660_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_041394241.1\|2055944_2056160_-	hypothetical protein	NA	NA	NA	NA
WP_041394242.1\|2056386_2056623_-	hypothetical protein	NA	NA	NA	NA
WP_011218501.1\|2056874_2058044_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_011218502.1\|2058108_2058555_+	N-acetyltransferase	NA	NA	NA	NA
WP_011220284.1\|2058654_2059941_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041394243.1\|2060092_2061112_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_011218505.1\|2061448_2061739_+	hypothetical protein	NA	NA	NA	NA
WP_041394244.1\|2062369_2062579_-	hypothetical protein	NA	NA	NA	NA
WP_041394248.1\|2063369_2063951_+	hypothetical protein	A0A0K1LMN3	Citrobacter_phage	5.2e-07	27.3
WP_157134317.1\|2063962_2064601_+	hypothetical protein	NA	NA	NA	NA
WP_011218509.1\|2066201_2068055_-	hypothetical protein	NA	NA	NA	NA
WP_011218510.1\|2068141_2068954_-	hypothetical protein	NA	NA	NA	NA
WP_011218511.1\|2068971_2069655_-	hypothetical protein	NA	NA	NA	NA
WP_011218512.1\|2069798_2071712_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_011218513.1\|2071701_2073045_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_011218514.1\|2073200_2075102_-	AAA family ATPase	NA	NA	NA	NA
WP_041394255.1\|2075104_2076886_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011218516.1\|2076885_2078388_-	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	7.0e-32	30.4
WP_157134371.1\|2078557_2080960_-	DEAD/DEAH box helicase family protein	A0A2I5ARD8	Synechococcus_phage	7.1e-10	24.0
WP_011218518.1\|2081163_2082540_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_011218519.1\|2082536_2083088_-	hypothetical protein	NA	NA	NA	NA
WP_011218520.1\|2083238_2083544_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011218521.1\|2083940_2084273_+	hypothetical protein	NA	NA	NA	NA
WP_041394257.1\|2084384_2085404_+	hypothetical protein	NA	NA	NA	NA
WP_011218523.1\|2085393_2086962_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041394258.1\|2086961_2087144_+	hypothetical protein	NA	NA	NA	NA
WP_011218608.1\|2087184_2088471_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
2099557:2099579	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2673836 : 2740311

Sulfolobus_monocaudavirus(18.18%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041394384.1\|2673836_2674718_-\|protease	protease HtpX	NA	NA	NA	NA
WP_041394385.1\|2677818_2677983_+	hypothetical protein	NA	NA	NA	NA
WP_041394386.1\|2678066_2678297_-	hypothetical protein	NA	NA	NA	NA
WP_011218999.1\|2678675_2679338_-	dethiobiotin synthase	NA	NA	NA	NA
WP_011219000.1\|2679330_2680170_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_041394387.1\|2680159_2681338_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_011219002.1\|2681324_2682377_-	biotin synthase BioB	NA	NA	NA	NA
WP_041394778.1\|2682550_2683816_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.8e-20	28.4
WP_041394779.1\|2683996_2684560_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011219005.1\|2684634_2685849_-	ROK family protein	NA	NA	NA	NA
WP_011219006.1\|2686130_2686799_+	7-carboxy-7-deazaguanine synthase QueE	A0A2P1JXY9	Rhodococcus_phage	8.3e-09	33.1
WP_011219007.1\|2687095_2689936_+	hypothetical protein	NA	NA	NA	NA
WP_011219008.1\|2690271_2691672_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	2.9e-88	39.3
WP_011219009.1\|2691936_2693112_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_011219010.1\|2694008_2694833_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_011219011.1\|2695059_2695530_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-31	46.9
WP_011219012.1\|2695891_2696668_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_041394389.1\|2696790_2698173_-	MFS transporter	NA	NA	NA	NA
WP_011219014.1\|2698702_2699893_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011219015.1\|2700019_2700325_-	hypothetical protein	NA	NA	NA	NA
WP_011219016.1\|2700646_2701057_-	hypothetical protein	NA	NA	NA	NA
WP_049788938.1\|2701612_2702227_+	DUF2982 domain-containing protein	NA	NA	NA	NA
WP_011219018.1\|2702269_2703607_-	MFS transporter	NA	NA	NA	NA
WP_011219019.1\|2703672_2705268_-	signal transduction histidine-protein kinase/phosphatase UhpB	NA	NA	NA	NA
WP_041394390.1\|2705267_2705876_-	transcriptional regulator UhpA	NA	NA	NA	NA
WP_011219021.1\|2706095_2707496_-	hexose-6-phosphate:phosphate antiporter	NA	NA	NA	NA
WP_041394391.1\|2707937_2708591_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011219023.1\|2708831_2709380_-	YcbK family protein	NA	NA	NA	NA
WP_011219024.1\|2709533_2711252_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_011219025.1\|2711765_2712260_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041394392.1\|2712474_2713320_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011219027.1\|2713279_2714050_-	TSUP family transporter	NA	NA	NA	NA
WP_041394393.1\|2714240_2715125_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041394394.1\|2715318_2716029_+	amino acid racemase	NA	NA	NA	NA
WP_011219030.1\|2716526_2718110_+	L-lactate permease	NA	NA	NA	NA
WP_011219031.1\|2718261_2718981_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_011219032.1\|2718993_2720403_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_011219033.1\|2720420_2721167_+	lactate utilization protein C	NA	NA	NA	NA
WP_011219034.1\|2721305_2722211_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011219035.1\|2722283_2722766_-	group II truncated hemoglobin	NA	NA	NA	NA
WP_011219036.1\|2722900_2725378_-	trimethylamine-N-oxide reductase TorA	NA	NA	NA	NA
WP_011219037.1\|2725449_2726634_-	pentaheme c-type cytochrome TorC	NA	NA	NA	NA
WP_006233652.1\|2726670_2726844_-	trimethylamine N-oxide reductase system protein TorE	NA	NA	NA	NA
WP_011219038.1\|2727280_2728585_+	peptidoglycan DD-metalloendopeptidase family protein	G9J3H9	Clostridium_phage	1.2e-16	35.3
WP_157134333.1\|2728744_2729563_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_011219040.1\|2729899_2730934_-	hypothetical protein	NA	NA	NA	NA
WP_011219041.1\|2731476_2732046_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_157134334.1\|2732020_2732419_-	hypothetical protein	NA	NA	NA	NA
WP_041393917.1\|2732489_2732918_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_041393917.1\|2733416_2733845_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011219042.1\|2734239_2735256_-\|transposase	IS110-like element ISPpr8 family transposase	NA	NA	NA	NA
WP_086000054.1\|2735422_2736995_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.2e-10	30.8
WP_011216905.1\|2737061_2737532_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011219044.1\|2737533_2737971_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.3e-10	71.4
WP_011218334.1\|2738013_2738310_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011218059.1\|2738309_2738657_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_011219045.1\|2738766_2740311_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.9e-65	32.5

DBSCAN-SWA_10

3502315 : 3517461

Klosneuvirus(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041394510.1\|3502315_3504937_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.4e-81	37.6
WP_041394511.1\|3505386_3506445_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	61.2
WP_011219645.1\|3506570_3507062_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	1.5e-28	47.8
WP_011219646.1\|3507284_3509855_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.4e-34	23.4
WP_041394512.1\|3509985_3510987_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	5.9e-35	34.9
WP_011219648.1\|3511039_3511948_-	murein hydrolase activator NlpD	A0A1P8CWQ1	Bacillus_phage	1.0e-09	34.9
WP_011219649.1\|3511964_3512594_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.2e-35	49.1
WP_041394514.1\|3512596_3513346_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-74	54.7
WP_041394817.1\|3513326_3514385_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_006232582.1\|3514410_3514884_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011219652.1\|3514889_3515594_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_041394515.1\|3515627_3515903_-	cell division protein FtsB	NA	NA	NA	NA
WP_011219654.1\|3516159_3517461_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.8e-135	60.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_006371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_006371_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006371_1

2187866-2189454

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAA	PILER-CR

26 spacers

cas6f,cas5,cas7f,cas3f,cas1

The CRISPR arrays of NC_006371_1

>merge|NC_006371|1|2187866-2189454|CRISPRCasFinder,CRT,PILER-CR
TCTCTAAGCTGCCTGTGCGGCAGTGAACGGTGTTTTTCATAATGGCGGTGGAATACCAGATTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCTCTTTCCGTGGGTTGGGTAATGGTGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACGCGATCCAGAAACAGAGTTGCAATCATCTGAATTTCTAAGCTGCCTGTGCGGCAGTGAACCACATGAGCAACCAAGTCGGCGGTCAGATTCATTTCTAAGCTGCCTGTGCGGCAGTGAACAAATAGTTACCAAGGTGAATGAAATCATTGCATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGAATATAGTCCGAAGTGGCTGTGTGTTTCATTTCTAAGCTGCCTGTGCGGCAGTGAACAACTAGTTAGGGCTTGGTTGCGGTATTCAGTATTTCTAAGCTGCCTGTGCGGCAGTGAACATCAGAGATGATCGCACCGGTAACAAGAGATATTTCTAAGCTGCCTGTGCGGCAGTGAACTCCCTCGCAATCTTAATACAGCAGTTCGAACATTTCTAAGCTGCCTGTGCGGCAGTGAACTCTTAAATCAAATTGTTCGGGTTTCGTTTACTTTTCTAAGCTGCCTGTGCGGCAGTGAACATCAATTGAAATCGATTCGACTTCTTACCTTATTTTCTAAGCTGCCTGTGCGGCAGTGAACGTGCAGACGTAGCACCAGCATGCGCTACTTATTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGTCGCGCATGATTGCGGTGACTGATTCTCATTTCTAAGCTGCCTGTGCGGCAGTGAACGTGTGAAGTAAGCAGCTTGTTCAGGACTAATATTTCTAAGCTGCCTGTGCGGCAGTGAACGCCACCTGCAAACCCCGCCCCCCCGGCTAGAATTTCTAAGCTGCCTGTGCGGCAGTGAACGTTCCTGATTATGGTGAGCGCGCCTTTATTGATTTCTAAGCTGCCTGTGCGGCAGTGAACCTCGAGCTCAATGTGAAGCGGGTCTTACTGTTTTTCTAAGCTGCCTGTGCGGCAGTGAAGAAATTCACGTGCTTATGAACAACGGCAAAAAATTTCTAAGCTGCCTGTGCGGCAGTGAACAATGCTATACACTCTCTTTGGCTTTTTCTACATTTCTAAGCTGCCTGTGCGGCAGTGAACAATGATATAAATTGATATAGCCCGTTGTTACATTTCTAAGCTGCCTGTGCGGCAGTGAACGTCATTTGCTGCGGTTATGCAGTCCCTCATAATTTCTAAGCTGCCTGTGCGGCAGTGAACAACCCCGCAGTGGTACTTTTAATCTCAGATAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTAGCCGATACTGATCCCTGCCATATAAAATTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGAATGATGCCATGTTCATACCTGGCGTAATTTCTAAGCTGCCTGTGCGGCAGTGAACGCCAGTTCTACGCCTTCACGTACCGCATCAAATTTCTAAGCTGCCTGTGCGGCAGTGAACACGAACGCGTGGTTGATGAATCGTTTGATTTTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_006371|1|1|2187866-2189454|CRISPRCasFinder
TCTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTGTTTTTCATAATGGCGGTGGAATACCAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCTCTTTCCGTGGGTTGGGTAATGGTGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGATCCAGAAACAGAGTTGCAATCATCTGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CACATGAGCAACCAAGTCGGCGGTCAGATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATAGTTACCAAGGTGAATGAAATCATTGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAATATAGTCCGAAGTGGCTGTGTGTTTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACTAGTTAGGGCTTGGTTGCGGTATTCAGTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAGAGATGATCGCACCGGTAACAAGAGATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCCTCGCAATCTTAATACAGCAGTTCGAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTTAAATCAAATTGTTCGGGTTTCGTTTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAATTGAAATCGATTCGACTTCTTACCTTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGCAGACGTAGCACCAGCATGCGCTACTTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGTCGCGCATGATTGCGGTGACTGATTCTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGTGAAGTAAGCAGCTTGTTCAGGACTAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCACCTGCAAACCCCGCCCCCCCGGCTAGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTCCTGATTATGGTGAGCGCGCCTTTATTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCGAGCTCAATGTGAAGCGGGTCTTACTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAG	AAATTCACGTGCTTATGAACAACGGCAAAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATGCTATACACTCTCTTTGGCTTTTTCTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATGATATAAATTGATATAGCCCGTTGTTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCATTTGCTGCGGTTATGCAGTCCCTCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACCCCGCAGTGGTACTTTTAATCTCAGATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTAGCCGATACTGATCCCTGCCATATAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGAATGATGCCATGTTCATACCTGGCGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCAGTTCTACGCCTTCACGTACCGCATCAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACGAACGCGTGGTTGATGAATCGTTTGATTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_006371|1|1|2187866-2189454|CRT
TCTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTGTTTTTCATAATGGCGGTGGAATACCAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCTCTTTCCGTGGGTTGGGTAATGGTGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGATCCAGAAACAGAGTTGCAATCATCTGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CACATGAGCAACCAAGTCGGCGGTCAGATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATAGTTACCAAGGTGAATGAAATCATTGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAATATAGTCCGAAGTGGCTGTGTGTTTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACTAGTTAGGGCTTGGTTGCGGTATTCAGTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAGAGATGATCGCACCGGTAACAAGAGATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCCTCGCAATCTTAATACAGCAGTTCGAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTTAAATCAAATTGTTCGGGTTTCGTTTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAATTGAAATCGATTCGACTTCTTACCTTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGCAGACGTAGCACCAGCATGCGCTACTTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGTCGCGCATGATTGCGGTGACTGATTCTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGTGAAGTAAGCAGCTTGTTCAGGACTAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCACCTGCAAACCCCGCCCCCCCGGCTAGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTCCTGATTATGGTGAGCGCGCCTTTATTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCGAGCTCAATGTGAAGCGGGTCTTACTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAG	AAATTCACGTGCTTATGAACAACGGCAAAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATGCTATACACTCTCTTTGGCTTTTTCTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATGATATAAATTGATATAGCCCGTTGTTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCATTTGCTGCGGTTATGCAGTCCCTCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACCCCGCAGTGGTACTTTTAATCTCAGATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTAGCCGATACTGATCCCTGCCATATAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGAATGATGCCATGTTCATACCTGGCGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCAGTTCTACGCCTTCACGTACCGCATCAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACGAACGCGTGGTTGATGAATCGTTTGATTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_006371|1|1|2187868-2189453|PILER-CR
TCTAAGCTGCCTGTGCGGCAGTGAACG	GTGTTTTTCATAATGGCGGTGGAATACCAGATT
TCTAAGCTGCCTGTGCGGCAGTGAACT	CGCTCTTTCCGTGGGTTGGGTAATGGTGATTTT
TCTAAGCTGCCTGTGCGGCAGTGAACG	CGATCCAGAAACAGAGTTGCAATCATCTGAATT
TCTAAGCTGCCTGTGCGGCAGTGAACC	ACATGAGCAACCAAGTCGGCGGTCAGATTCATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	AATAGTTACCAAGGTGAATGAAATCATTGCATT
TCTAAGCTGCCTGTGCGGCAGTGAACT	TGAATATAGTCCGAAGTGGCTGTGTGTTTCATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	ACTAGTTAGGGCTTGGTTGCGGTATTCAGTATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	TCAGAGATGATCGCACCGGTAACAAGAGATATT
TCTAAGCTGCCTGTGCGGCAGTGAACT	CCCTCGCAATCTTAATACAGCAGTTCGAACATT
TCTAAGCTGCCTGTGCGGCAGTGAACT	CTTAAATCAAATTGTTCGGGTTTCGTTTACTTT
TCTAAGCTGCCTGTGCGGCAGTGAACA	TCAATTGAAATCGATTCGACTTCTTACCTTATTT
TCTAAGCTGCCTGTGCGGCAGTGAACG	TGCAGACGTAGCACCAGCATGCGCTACTTATTT
TCTAAGCTGCCTGTGCGGCAGTGAACT	AGTCGCGCATGATTGCGGTGACTGATTCTCATT
TCTAAGCTGCCTGTGCGGCAGTGAACG	TGTGAAGTAAGCAGCTTGTTCAGGACTAATATT
TCTAAGCTGCCTGTGCGGCAGTGAACG	CCACCTGCAAACCCCGCCCCCCCGGCTAGAATT
TCTAAGCTGCCTGTGCGGCAGTGAACG	TTCCTGATTATGGTGAGCGCGCCTTTATTGATT
TCTAAGCTGCCTGTGCGGCAGTGAACC	TCGAGCTCAATGTGAAGCGGGTCTTACTGTTTT
TCTAAGCTGCCTGTGCGGCAGTGAAGA	AATTCACGTGCTTATGAACAACGGCAAAAAATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	ATGCTATACACTCTCTTTGGCTTTTTCTACATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	ATGATATAAATTGATATAGCCCGTTGTTACATT
TCTAAGCTGCCTGTGCGGCAGTGAACG	TCATTTGCTGCGGTTATGCAGTCCCTCATAATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	ACCCCGCAGTGGTACTTTTAATCTCAGATAATT
TCTAAGCTGCCTGTGCGGCAGTGAACT	TGTAGCCGATACTGATCCCTGCCATATAAAATT
TCTAAGCTGCCTGTGCGGCAGTGAACC	TTGAATGATGCCATGTTCATACCTGGCGTAATT
TCTAAGCTGCCTGTGCGGCAGTGAACG	CCAGTTCTACGCCTTCACGTACCGCATCAAATT
TCTAAGCTGCCTGTGCGGCAGTGAACA	CGAACGCGTGGTTGATGAATCGTTTGATTTTTT
TCTAAGCTGCCTGTGCGGCAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_006371.1\|WP_041395545.1\|2190144_2191155_-\|hypothetical-protein	cas5	cls000078_cas5_CAS-I-F	unknown
NC_006371.1\|WP_011221975.1\|2195035_2196031_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_006371.1\|WP_011221980.1\|2204526_2205324_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NC_006371.1\|WP_011221977.1\|2200248_2200944_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|237018
NC_006371.1\|WP_041395547.1\|2192114_2195039_-\|CRISPR-associated-endonuclease-Cas3''	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_006371.1\|WP_011221978.1\|2200978_2204104_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NC_006371.1\|WP_041395544.1\|2189583_2190135_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_006371.1\|WP_011221973.1\|2191163_2192111_-\|hypothetical-protein	cas7f	cls000079_cas7f_CAS-I-F	unknown
NC_006371.1\|WP_011220614.1\|2196225_2197836_+\|transposase	unknown	unknown	gnl\|CDD\|376980
NC_006371.1\|WP_041395542.1\|2186060_2186339_+\|DUF3303-family-protein	unknown	unknown	gnl\|CDD\|378707
NC_006371.1\|WP_011221964.1\|2178032_2178659_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NC_006371.1\|WP_157134447.1\|2180262_2180427_-\|hypothetical-protein	unknown	unknown	unknown
NC_006371.1\|WP_011221976.1\|2198589_2200086_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NC_006371.1\|WP_011221962.1\|2176807_2177323_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|367947
NC_006371.1\|WP_011221968.1\|2183039_2185952_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223893
NC_006371.1\|WP_006228647.1\|2186590_2186797_-\|DUF3283-family-protein	unknown	unknown	gnl\|CDD\|288527
NC_006371.1\|WP_011221966.1\|2180748_2181432_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_006371.1\|WP_157134446.1\|2176655_2176808_-\|hypothetical-protein	unknown	unknown	unknown
NC_006371.1\|WP_011221967.1\|2181739_2182669_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|235880
NC_006371.1\|WP_011221969.1\|2186900_2187665_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_006371.1\|WP_011221975.1\|2195035_2196031_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	7.49907e-179
NC_006371.1\|WP_011221980.1\|2204526_2205324_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.63294e-29
NC_006371.1\|WP_041395547.1\|2192114_2195039_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	2.26502e-37
NC_006371.1\|WP_041395544.1\|2189583_2190135_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71762e-79
NC_006371.1\|WP_011220614.1\|2196225_2197836_+\|transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	7.60998e-09
NC_006371.1\|WP_011221977.1\|2200248_2200944_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|237018	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	5.79349e-27
NC_006371.1\|WP_011221978.1\|2200978_2204104_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NC_006371.1\|WP_011221966.1\|2180748_2181432_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.00089e-34
NC_006371.1\|WP_011221976.1\|2198589_2200086_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_006371.1\|WP_011221968.1\|2183039_2185952_-\|hypothetical-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	5.74745e-05
NC_006371.1\|WP_006228647.1\|2186590_2186797_-\|DUF3283-family-protein	gnl\|CDD\|288527	pfam11686, DUF3283, Protein of unknown function (DUF3283). This family of proteins with unknown function appears to be restricted to Proteobacteria.	5.59396e-25
NC_006371.1\|WP_041395542.1\|2186060_2186339_+\|DUF3303-family-protein	gnl\|CDD\|378707	pfam11746, DUF3303, Protein of unknown function (DUF3303). Several members are annotated as being LysM domain-like proteins, but these did not match any LysM domains reported in the literature.	6.35971e-08
NC_006371.1\|WP_011221964.1\|2178032_2178659_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	3.96023e-35
NC_006371.1\|WP_011221962.1\|2176807_2177323_-\|fimbrial-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	8.44307e-41
NC_006371.1\|WP_011221967.1\|2181739_2182669_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|235880	PRK06860, PRK06860, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0

>NC_006371.1|WP_011221969.1|2186900_2187665_-|hypothetical-protein
MTNYQHYLATVERVYPVVLAELASTWCVECSEGSGNQIKLVAANGTVYHRLDVAPINAPDMWTDKQPIADAFIEYIARGFARVTPLRQSVYRNNMSYWLERGLQGLQSVFSEQEGLLQAVSQVDYPYPSKVKLDGDYFPCWVLGEKDNQIMVSVIDRRCGTLMKSLPVVGEQLVDTEHWFSAQVIDSSEEAIETAHHHIADLVTAPIDRTDDEPKLADVITNPCASTISPVVSVMLMMAVVVAFFVILKIVLGF
>NC_006371.1|WP_006228647.1|2186590_2186797_-|DUF3283-family-protein
MQNLSLLSQTERNRIELDKQAAYTVWKVKNAKAGYEAFAELSNNISDDDDRDLFERAVSKYKVQMGVK
>NC_006371.1|WP_041395542.1|2186060_2186339_+|DUF3303-family-protein
MTWQIHQGKLHPILAHFSQLSDEQDTAMMGDELKMIGRWHDLVSGAGVAICESDSAAAISAYALKWNNDMDISVQVVVDDTAARKLGESLLL
>NC_006371.1|WP_011221968.1|2183039_2185952_-|hypothetical-protein
MSVKGSTLKRTVYIGTHICLLVGILFCVGLILPSAMAAQSVSWDRQNQTWLSQQSEHFTIHFRDGHQSQAAKSLDIAERVHSELLPFFFHAPENRTEIVLVDDFDFSNGWATPFPFAQIRLFMSPPEDVNGLEANNEWLHMLIRHEYAHIMHMELGAGAVKGVRKVLGRNGLLFPHALTPSMLIEGVAVYLETNKALGYGRLQGSIYDMQMRMEVASGKFNDLEQVVVASREWPLGSQYLYGAYFIEYLVATYGEEKLALFLQDYSRKLLPYFLLNGSAETVFGKDFFQLWDDFQQDFETRYNSQIKELAQQAVTGRDIAINPYLQVTAPGNHGLLVARKNGEDRAVISRLNNSDQSEGKWQNIANTKGITALDLHPTGGLVVSRIVNYTDGRQINDLFLYQDKGWIRLTERLRFRKVRWMLNGRQLLASRNIDGLSELWLIDAGNSHTSLVWRGEQGDVLGGFDISPTGDFVVASMKRPHQGWNLERLPITSLPSNTLLDIDWLPLTDTKATENSPVYLPDGRIAYSADYEGIYNIFVIAPNSGEVTQWTREIGGAFQPQWQPYLGLAYQAYGTDGYHLKVIEQPKPLTTFTVNSQQGRYDYPPVVVNTSDKSAVEPYTPWSSLRPRTWLPLLFIDDNSTEVGFVTSGSDALSRHNYWVSSSWDFDNDVANFNAGYRYDNRWLLAYERSHNFETFIQNTSAGNEITGRRITQDDNILLQRNNIFTAWEDDLALHAGVTWEKESLVSEPSLSNLPPYRPADESLFGFAFTFDNRETYLNVPGIGWGHYADFIVETNALFNGDFSGEKYQGQWRGTWDFPGRTTLTGRLGFGYADDSAKSFRLGGTDLLEESRLFGRDTQALRGYDESVQRGHRYATQRLEIETWLGRLERNWRLYPVGIGDISGSVFIDSGAAWKESNNIQQLTGAGVQITIEAKLGYGLTLPITLGYAHGFDEELGKEQFYLNVTGGFW
>NC_006371.1|WP_011221967.1|2181739_2182669_-|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSKFTPPTFKKAFLHPRYWPTLMMISILYLISWLPYFIQFRMGQGVGWLSFRLASRRRETVKRNLELCFPDMSEPERDALIHKNQENTGLALFETGMAWFWPDLRVQRHVEVEGIEHIKKLQAKGKGVLLIAIHSMNLELGARAFGLSTPGVGVYRPNNNPCFDYFQYKGRSRSNKDMIDRKDVKGMLRALRKGELVWYAPDHDYGRRRSTFAPLFAVENACTTTGTSLLVDASDCAAVPFAMIRNTDSGKYTLKIFPPLDAFPHKDHDAAAAYINKAVERSIMEAPEQYLWLHRRFKTRPEGEPSLYK
>NC_006371.1|WP_011221966.1|2180748_2181432_-|acyltransferase
MINTLRRNIKKQDSVVSQLLYRIVKFAKYGQLPPLTILYKLVYLCYKLVGITFHRCMNLFIYVPMLQSQLTQYAKGLQLENGMPLIAGPVSISIGNNACLNGAMSIHGHPDNEQCQLVIGDDCYIGWQTGITVGTKVIIGNNVMIAGRTMISGHSGHGVSIDERDNPIMADLVIEDNVWLCTNCHIVRPVHIGKGSVIAAGCIVTKDVPENVLFGGNPGKVIRYLNT
>NC_006371.1|WP_157134447.1|2180262_2180427_-|hypothetical-protein
MTLLHENLFSQLKDQGVVDVALLSLLQVLVKHYLGESACLQEAKGWQSCKRSPE
>NC_006371.1|WP_011221964.1|2178032_2178659_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MKTVKKKCISIAFAILSLLSAGCNSDTIAKQGIHYTILPPISYELPEVVEIFSLSCTHCRMMEEIMHSLEIKSESDIQKMHCVFNKRTSTEAYLYYSAAIQTEDQPSRLLMDQLFAFIQHDAEGLSGLQVESKIRDIFHTYNLQAPEDLTAEQFEKISELVERDRQIMKELNLGSVPAIVVNGKYLINMNEHVNLDAVALTIKELKTI
>NC_006371.1|WP_011221962.1|2176807_2177323_-|fimbrial-protein
MSLKTRNVITTALLAAGMLVAMPTIAKTSAPQEIKVKTTVGGYMDWSRVDGTAISDPIQLQYVANGGHGEFKNLKLNTKVTPEMAGKKVSFLLKNDLEIVNQIDQSKIDGFKISVGGVELKTAGNVTVVAEGESGFTGVSKALLVTHSGLTSKPADGRYVGFASIVLEGEA
>NC_006371.1|WP_157134446.1|2176655_2176808_-|hypothetical-protein
MKKTTLALAALIAITSGSVFANVKKDYQLNFTAQVEDGFSFERLDGKSMV
>NC_006371.1|WP_041395544.1|2189583_2190135_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDSYVDIQLKPDAEMREAELSSKVFTKFHKALATLNTNKIGISFPQMNLKLGRLFRIHGNASLLKDLQGIKWLGALAGYCQVGEITVVPDQVQYRVISVKRSNLSKAKLKRLIARGSIDKDGEKRYKVKMLSQGFDNPYLDLFSSSTGQVYRKFFEFGDIQATSVSDEFDSYGLSNTATIPWF
>NC_006371.1|WP_041395545.1|2190144_2191155_-|hypothetical-protein
MKITIEYDSCWRNSFLDGSNNEQLPKKGRVFLGSMTNLKKEGNFKVRETTLDTVMGLLNRLIGDQRKLYQARSKTHEAVYYFEDLEDKISFVDNPQFTNEMTFIRNMNGSTDQNSFTGMIKVSDSVFTSEYSSQFWSVLNLDFMQVCDFIINDQQVEVTIQLDPLSIINRLELLNKEKVLENQGDLAKTVEVLKTHFPDIEYLNNKGLITPISIYCSALYLQLARLEVRFDMTTAKTKAGGISGISKRGFTKKDFMARYTTGPKKTIWGNPFIKKEKIKGQGEVTSMMTKASGQLEISIDVDRTKGQEIKTLIENAGVSSFYLGKKGLAYVSNIRL
>NC_006371.1|WP_011221973.1|2191163_2192111_-|hypothetical-protein
MQKVTGIKSVDFKIKALGHGVVNWNGPTTLTGDNGKTVDNHTLPKLRGYTNLTGKIKEETGYKYKKEATDIDFKKTPLYISQNCIRHHLFKAQAFDLHFAADKNLEKVLASITGLIRGYVVPSSQCKRTSPLLIEDFVDQLGNGNFEQFGQAGERDSSSFFSKTTFGDTEYISYGSISIEQLQFISLDKKFDRASMVIKEGQGEEVAEAVQSFIKTLNPSLNPVAAFHSNYVRKGTIFEEGECGILLNDDAVKALVEQTLSRIADLSIRQAKGYMYVDEITVDYNDSHKMMRIKRDESEIVTEPQSQYAQYFYVK
>NC_006371.1|WP_041395547.1|2192114_2195039_-|CRISPR-associated-endonuclease-Cas3''
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTIITEDGLLTVKKMLRQTASKSTAVSCHWIRSRSRSQLLWLVGNKLKFNQQGIVPVNSTGKEVFMDVATDKPKQGVLYANTQLQPLAEHLFAVGYLAEQLHRKLLPENPQFSIVNFIAGCLHDLGKIDPKFQQWVTNPKKKNYVADDGQHIDDAKFSFEKHPRHNEVSLLLYQLLDGTELTAIPKKNKRSIKHAVYWHHAKPFRKDKNSFTTYKDISKKLIAKQKDVSLGDMVGQAQLLLKQVVGIDKKYRELSNSTLEKAFLAEVSTELESSLPDAPALPTYKEYELEESVIANSGSIKSNARNNIARACLITADRKISSLSAADLHEVIFERSLDEKVAELLEVETTLSSQIETCLSSFFPNSERSIKQSEIAQQLTTAEDVAVLAGAAGCGKTKIALEWAKLQGAKRIIWVCPRVQVCQGLFYELTSEQYLPNATIEINTGEFKFHNQWDNPIPEDKNFSGDIVITTIDQIIGSVISHTKANTLIDFLNVSVVFDEFHEYVNMPAFNLLFAELIAAKKMQQQHANTLLVSATPHYVFVEDLLGIHQDDINVMPSFNQSQYQLDFKVFDDSVLGKDNPLFVPQNDCAFVISNMALTAQNSFIANQHDENAVLLHSKFIKSDKRKWFGEVYEAYKRGGTRKYEVLRSGPIVQASLNISCDYMVAEITNAEDCLQRLGRLDRFGENNVFNTYALAVPKSIAEPKGNSPASRFLSKMYVLSSVRAWYQCLLNALEDKIFTLPEIYQLYYEFHHRESTKRFIESDLVAALKESVKKINEKVIDPITVPPKKNKDKKRSKISKGSLRGDNRFVQLAVVDLSNAEPKYLEEYAYSIPLDDDSNIDNMTYATNAILGYGKSDKDLLAHMFKKHHNISGVKTAHTDKILLNEARDPESPIYLSYTTNDLLQVGGESSRHPHAIYYAVCDKQAIGAVSINQTTEDEE
>NC_006371.1|WP_011221975.1|2195035_2196031_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNLSSSDLKSILHSKRANMFYLEYCRVMQKDGRVLYLTETKNENQYFNIPIANTTVLLLGNGTSITQAAMRMLAQAGVLVGFSGGGGTPLYMANDAEQPIEWFTPQSEYRPTEYLQGWMSFWFDDQKRLEVAKTFQQARLTFLQKIWSKDRELTQEGFNIKDSGLLQAFERFEQRTEEATKQSDLLLTEAQLTKYLYKFASNAVQLQDFKRQHQSTDKANDFLNHGNYLAYGLAASTLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDTIVLPWAFICAKDNDTEQEFRQQVLQAFTDHKVLDFMFDTVKEVALSYHKKTPQNKKVKSS
>NC_006371.1|WP_011220614.1|2196225_2197836_+|transposase
MKINLPDIPESEQTPLVKGLIGIIEQLSDTVERQQEEITLLKDEINVLKGQKKRPKFKPSKLDTNTDEKSDQGSTDNKRSGSTKRSKNQTLTIHQDNIVQPEQPLPIGARFKGYRDFVVQELEIQSCNVRYRLACYLLPDGSTVTATLPNGLAGQHFGTRLRSYILYQYHQCQVTQPLLLEQLREWGIDISSGQLNRLLTENHDDLHEEKAELLAAGLQSTGYITTDDTGARHQGKNGFVTHIGNEWFAWFQSSDRKNRINFLSLLRAGNKGYQVNTCALNYMATNKLPAPQLALLANTPVTNFGCEEEWSAHLVQLGIVVKRHIQIATEGALLGCASENEALGKLAVISDGAGQFKVLQHGLCWVHAERLVHKLIPLNEGHREDIAQVRDEIWSFYKELKEYKKQPCDTKKSALSKEFDRLFTQKTRYELLNQQLKRLNKLKSSLLLVLERPEIPIHTNGSENDLREQVKRRKVSGGTRSDLGRQCRDTFSSLKKTCRKLGVSFWKYLNDRISQSNVIPSLGSLVLQKAHPASAY
>NC_006371.1|WP_011221976.1|2198589_2200086_-|sodium/proline-symporter-PutP
MIENSFAITGTFIVYLIAMMAIGYIAYKRTSNSSDYFLGGRSLGPWPAALSAGASDMSGWLLLGLPGYAYAAGIESLWLAGGLLLGTWLNWLICAKRLRTYSITADNSLTLPEFLARRFDDKSKLIQTISAFFILLFFLFYTSSGLVAGGKLFETVFGLDYSIAVIVGTVCVVSYTLFGGFLAVSWTDLVQGLLMSAALLIVPIAAMSGGVGDLTAALELKNPELMTLFNDVKGQPLSAIAIISLAAWGLGYFGQPHILARFKATRSNADITTARRIAVIWTALSMIGAVLVGLVGILYVDNQLAGELADGEKIFMLLVNSIFHPVVAGILLAAILAAIMSTADSQLLVSSSALAEDFYKQVFRPDAPTEEIVMVGRVAVIGLSIVALVLAMNPDSTVLGLVSYAWAGFGAAFGPVLLLSLYWKRMNRNGALVGIIVGALTVVIWKQITGGIFDIYEIVPGFILATLSVVIVSLTTGEPSEKIQKQFDQYEKNLVEFD
>NC_006371.1|WP_011221977.1|2200248_2200944_-|aldehyde-dehydrogenase-family-protein
MTTNIQTMVDSSLSTWENWNGLGYSERTAILTQWASQLEANAKSMVEFQCRNALEHVGETLLMPGPTGETNELYSAGRGAFVVTADIDATITAIVGQITAVLVTGNTLFICLPTGSALSGKALVSQLEKAGCPHGVVVAVDCDQLADLASHTAIAGVAYAGQLSTSQALARQLAARDGLLAQLVTETDCELLPVIGSPTYILRFVTERTRTINITAVGGNATLLELGSGEH
>NC_006371.1|WP_011221978.1|2200978_2204104_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MFNAADVLQPSFIERPLNEIWTLISPLYSVDESLWLEQLLPLAEPSDIERKHTTDKAAELIQRVRADKNAIQMIDALLLEYSLDTKEGILLMCLAEALMRIPDAATADALIRDKLSVADWKSHLKNSDSLFVNASTWGLMLTGKVVTMDAKEDGKPSHVINRLVNKMSEPVIRQAMNQAMKIMGHQFVLGRTISEAMKNGKSNRDKGFTYSFDMLGEAALTAQDAQKYFKDYIMAVESVGRDEYASQKGSNQQSPDPTVSIKLSALHPRYDVANEARVLDEMYESVLTLLSRARELNVGITIDAEEADRLELSLKLFEKLYRSDAVKGWGRFGIVVQSYSKRALPVLAWLAALSKAQGDIIPLRLVKGAYWDSELKLSQQSGFSDYPVFTRKESTDSAYLACARFLLSEHLRGVIYPQFASHNAHTISAIVAMTDHRDFEFQRLHGMGDALYNHAMDMYQANVRIYAPVGSHKDLLPYLVRRLLENGANSSFVHRLVDANCPIESLTEHPVDTLRSRPSLNNSLIPLPPQIFGESRKNSASINIDIESEWTPFNAAIQAFSQHQWQAGPIVNGVTLDGEQHAITAPYNRSESVGQVAFSSASQVAQAIDVASEAYPAWSQVAASERGECLQRLADLLELHTGELVALCHREAGKTIQDSIDEIREAVDFCRFYGEQASSELASAKSIKSFDGSTKQLTYQGRGVFACISPWNFPLAIFLGQVSAALAAGNTVVAKPAEQTSLIAYRAIELMLEAGIPAGAIQLLPGTGAEVGATLTTDVRIAGVAFTGSTETAQRINRSLVARDCEAVPFIAETGGQNAMIVDSTALPEQVVRDVVRSAFASAGQRCSALRVLFVQADIADRIITLIKGAMAELSVGRPELHSTDVGPVIDIAAKEKLLTHIESLKNQSTLVAQTQLSDECKLGDFVAPTAFEINSIDILKNENFGPILHIVRFKANEIDQVVDQINHTGFGLTLGVHSRNERTYCRIEQRARVGNCYINRDQVGAVVGVQPFGGQGLSGTGPKAGGPHYLYRFTKDVLSA
>NC_006371.1|WP_011221980.1|2204526_2205324_-|helix-turn-helix-domain-containing-protein
MNTKFKHSEIVILPEQMEHHNHGYNQVVIGLSGQTEFDIEGYGNLVCPGQGCLVTADSEHAFSGLGRNEILVLNIPVSQHSFEETYGYLQPSYAMDRVERLFDQSSYFHLDSQAQNLINALTVEMTAHPDDLLLSKACTDTLMCVLQRHFKPLASDRHSARLNMDIVDQYIIQHLTRKISVTQLAGQVFLGESQFHLLFKNQTGVTPHQYVLKKRLEMAKQLMEESQLSLAQVAQSCGFSGQSSFTQAFSRLYGMPPARFKKNNV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006371_1	1.22\|2189155\|32\|NC_006371\|CRISPRCasFinder,CRT	2189155-2189186	32	NC_011311	Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence	74252-74283	6	0.812
NC_006371_1	1.48\|2189156\|33\|NC_006371\|PILER-CR	2189156-2189188	33	NC_011311	Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence	74251-74283	6	0.818
NC_006371_1	1.6\|2188194\|32\|NC_006371\|CRISPRCasFinder,CRT	2188194-2188225	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	784790-784821	7	0.781
NC_006371_1	1.17\|2188855\|32\|NC_006371\|CRISPRCasFinder,CRT	2188855-2188886	32	NZ_CP034782	Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence	177223-177254	7	0.781
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MG592502	Vibrio phage 1.131.O._10N.222.49.A8, partial genome	36397-36428	8	0.75
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MG592557	Vibrio phage 1.189.B._10N.286.51.B5, partial genome	35325-35356	8	0.75
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MG592559	Vibrio phage 1.189.O._10N.286.51.B5, partial genome	35324-35355	8	0.75
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MG592503	Vibrio phage 1.132.O._10N.222.49.F8, partial genome	35410-35441	8	0.75
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MG592558	Vibrio phage 1.189.C._10N.286.51.B5, partial genome	35325-35356	8	0.75
NC_006371_1	1.15\|2188735\|32\|NC_006371\|CRISPRCasFinder,CRT	2188735-2188766	32	NC_015952	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence	116504-116535	8	0.75
NC_006371_1	1.19\|2188975\|32\|NC_006371\|CRISPRCasFinder,CRT	2188975-2189006	32	NC_006842	Aliivibrio fischeri ES114 plasmid pES100, complete sequence	36518-36549	8	0.75
NC_006371_1	1.36\|2188435\|33\|NC_006371\|PILER-CR	2188435-2188467	33	MG592502	Vibrio phage 1.131.O._10N.222.49.A8, partial genome	36397-36429	8	0.758
NC_006371_1	1.36\|2188435\|33\|NC_006371\|PILER-CR	2188435-2188467	33	MG592557	Vibrio phage 1.189.B._10N.286.51.B5, partial genome	35325-35357	8	0.758
NC_006371_1	1.36\|2188435\|33\|NC_006371\|PILER-CR	2188435-2188467	33	MG592559	Vibrio phage 1.189.O._10N.286.51.B5, partial genome	35324-35356	8	0.758
NC_006371_1	1.36\|2188435\|33\|NC_006371\|PILER-CR	2188435-2188467	33	MG592503	Vibrio phage 1.132.O._10N.222.49.F8, partial genome	35410-35442	8	0.758
NC_006371_1	1.36\|2188435\|33\|NC_006371\|PILER-CR	2188435-2188467	33	MG592558	Vibrio phage 1.189.C._10N.286.51.B5, partial genome	35325-35357	8	0.758
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	NC_048694	Klebsiella phage vB_Kpn_F48, complete genome	34875-34908	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN434092	Klebsiella phage AmPh_EK29, complete genome	34440-34473	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN781108	Klebsiella phage vB_Kpn_P545, complete genome	34597-34630	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN013081	Klebsiella phage vB_KpnM_Potts1, complete genome	34097-34130	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN044033	Klebsiella phage Marfa, complete genome	31127-31160	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN395284	Klebsiella phage PhiKpNIH-6, complete genome	61344-61377	8	0.765
NC_006371_1	1.37\|2188495\|34\|NC_006371\|PILER-CR	2188495-2188528	34	MN106245	Klebsiella phage EI, complete genome	30914-30947	8	0.765
NC_006371_1	1.5\|2188134\|32\|NC_006371\|CRISPRCasFinder,CRT	2188134-2188165	32	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	278076-278107	9	0.719
NC_006371_1	1.5\|2188134\|32\|NC_006371\|CRISPRCasFinder,CRT	2188134-2188165	32	KR997933	Mycobacterium phage Madruga, complete genome	18585-18616	9	0.719
NC_006371_1	1.14\|2188675\|32\|NC_006371\|CRISPRCasFinder,CRT	2188675-2188706	32	NC_014023	Bacillus megaterium QM B1551 plasmid pBM700, complete sequence	3278-3309	9	0.719
NC_006371_1	1.25\|2189335\|32\|NC_006371\|CRISPRCasFinder,CRT	2189335-2189366	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	516541-516572	10	0.688
NC_006371_1	1.25\|2189335\|32\|NC_006371\|CRISPRCasFinder,CRT	2189335-2189366	32	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	76758-76789	10	0.688
NC_006371_1	1.10\|2188434\|32\|NC_006371\|CRISPRCasFinder,CRT	2188434-2188465	32	MN512538	Vibrio phage Seahorse, complete genome	3524-3555	11	0.656

1. spacer 1.22|2189155|32|NC_006371|CRISPRCasFinder,CRT matches to NC_011311 (Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence) position: , mismatch: 6, identity: 0.812

aaccccg--cagtggtacttttaatctcagataa	CRISPR spacer
--tctcgatcagttttacttttaatctcagataa	Protospacer
  .*.**  ****  *******************

2. spacer 1.48|2189156|33|NC_006371|PILER-CR matches to NC_011311 (Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence) position: , mismatch: 6, identity: 0.818

caaccccg--cagtggtacttttaatctcagataa	CRISPR spacer
--atctcgatcagttttacttttaatctcagataa	Protospacer
  *.*.**  ****  *******************

3. spacer 1.6|2188194|32|NC_006371|CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ttgaatatagtccgaagtg---gctgtgtgtttca	CRISPR spacer
atgaatatagtccgaagtgaatgttgtgcatt---	Protospacer
 ******************   *.****..**

4. spacer 1.17|2188855|32|NC_006371|CRISPRCasFinder,CRT matches to NZ_CP034782 (Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence) position: , mismatch: 7, identity: 0.781

ctcgagctcaatgtgaagcgggtcttactgtt	CRISPR spacer
cccgcgatcaatgtgaagcgggtctaccgggt	Protospacer
*.** * ******************  * * *

5. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MG592502 (Vibrio phage 1.131.O._10N.222.49.A8, partial genome) position: , mismatch: 8, identity: 0.75

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
gagtaaattaaattgttcgggtttcgtatcgc	Protospacer
   *****.****************** *  .

6. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MG592557 (Vibrio phage 1.189.B._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.75

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
gagtaaattaaattgttcgggtttcgtatcgc	Protospacer
   *****.****************** *  .

7. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MG592559 (Vibrio phage 1.189.O._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.75

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
gagtaaattaaattgttcgggtttcgtatcgc	Protospacer
   *****.****************** *  .

8. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MG592503 (Vibrio phage 1.132.O._10N.222.49.F8, partial genome) position: , mismatch: 8, identity: 0.75

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
gagtaaattaaattgttcgggtttcgtatcgc	Protospacer
   *****.****************** *  .

9. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MG592558 (Vibrio phage 1.189.C._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.75

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
gagtaaattaaattgttcgggtttcgtatcgc	Protospacer
   *****.****************** *  .

10. spacer 1.15|2188735|32|NC_006371|CRISPRCasFinder,CRT matches to NC_015952 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence) position: , mismatch: 8, identity: 0.75

gccacctgcaaaccccgcccccccggctagaa	CRISPR spacer
ggcgcctgcaaatccctcccccccggcgacgc	Protospacer
* *.********.*** ********** * .

11. spacer 1.19|2188975|32|NC_006371|CRISPRCasFinder,CRT matches to NC_006842 (Aliivibrio fischeri ES114 plasmid pES100, complete sequence) position: , mismatch: 8, identity: 0.75

aatgctatacactctctttggctttttctaca	CRISPR spacer
tgaggtattcacgctctttggctttttcaata	Protospacer
 . * *** *** *************** *.*

12. spacer 1.36|2188435|33|NC_006371|PILER-CR matches to MG592502 (Vibrio phage 1.131.O._10N.222.49.A8, partial genome) position: , mismatch: 8, identity: 0.758

ctcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
cgagtaaattaaattgttcgggtttcgtatcgc	Protospacer
*   *****.****************** *  .

13. spacer 1.36|2188435|33|NC_006371|PILER-CR matches to MG592557 (Vibrio phage 1.189.B._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.758

ctcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
cgagtaaattaaattgttcgggtttcgtatcgc	Protospacer
*   *****.****************** *  .

14. spacer 1.36|2188435|33|NC_006371|PILER-CR matches to MG592559 (Vibrio phage 1.189.O._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.758

ctcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
cgagtaaattaaattgttcgggtttcgtatcgc	Protospacer
*   *****.****************** *  .

15. spacer 1.36|2188435|33|NC_006371|PILER-CR matches to MG592503 (Vibrio phage 1.132.O._10N.222.49.F8, partial genome) position: , mismatch: 8, identity: 0.758

ctcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
cgagtaaattaaattgttcgggtttcgtatcgc	Protospacer
*   *****.****************** *  .

16. spacer 1.36|2188435|33|NC_006371|PILER-CR matches to MG592558 (Vibrio phage 1.189.C._10N.286.51.B5, partial genome) position: , mismatch: 8, identity: 0.758

ctcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
cgagtaaattaaattgttcgggtttcgtatcgc	Protospacer
*   *****.****************** *  .

17. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to NC_048694 (Klebsiella phage vB_Kpn_F48, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

18. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN434092 (Klebsiella phage AmPh_EK29, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttga	Protospacer
** **** ****************.. **.**.

19. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN781108 (Klebsiella phage vB_Kpn_P545, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

20. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN013081 (Klebsiella phage vB_KpnM_Potts1, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

21. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN044033 (Klebsiella phage Marfa, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

22. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN395284 (Klebsiella phage PhiKpNIH-6, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

23. spacer 1.37|2188495|34|NC_006371|PILER-CR matches to MN106245 (Klebsiella phage EI, complete genome) position: , mismatch: 8, identity: 0.765

catcaattgaaatcgattcgacttcttaccttat	CRISPR spacer
cagcaatggaaatcgattcgactttcgactttca	Protospacer
** **** ****************.. **.**

24. spacer 1.5|2188134|32|NC_006371|CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.719

aaatagttaccaaggtgaatgaaatcattgca	CRISPR spacer
aaatacttaacaaggtgaatgaatctgttcat	Protospacer
***** *** ************* ...**

25. spacer 1.5|2188134|32|NC_006371|CRISPRCasFinder,CRT matches to KR997933 (Mycobacterium phage Madruga, complete genome) position: , mismatch: 9, identity: 0.719

aaatagttaccaaggtgaatgaaatcattgca	CRISPR spacer
aggatgaggccaaggtgaaagaaatcatcgca	Protospacer
*..  *  .********** ********.***

26. spacer 1.14|2188675|32|NC_006371|CRISPRCasFinder,CRT matches to NC_014023 (Bacillus megaterium QM B1551 plasmid pBM700, complete sequence) position: , mismatch: 9, identity: 0.719

gtgtgaa-----gtaagcagcttgttcaggactaata	CRISPR spacer
-----aatcctcttaagcatcttgtacaggactaatt	Protospacer
     **      ****** ***** **********

27. spacer 1.25|2189335|32|NC_006371|CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 10, identity: 0.688

gccagttctacgccttcacgtaccgcatcaaa	CRISPR spacer
aggtgttctacgctttcacgtagcgcaccttt	Protospacer
.   *********.******** ****.*

28. spacer 1.25|2189335|32|NC_006371|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gccagttctacgccttcacgtaccgcatcaaa	CRISPR spacer
aggtgttctacgcattcacgtagcgcaccttt	Protospacer
.   ********* ******** ****.*

29. spacer 1.10|2188434|32|NC_006371|CRISPRCasFinder,CRT matches to MN512538 (Vibrio phage Seahorse, complete genome) position: , mismatch: 11, identity: 0.656

tcttaaatcaaattgttcgggtttcgtttact	CRISPR spacer
agcaaattcaaattgttcgggtttggtaacgc	Protospacer
  . ** ***************** **    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

327196 : 392067

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011220374.1\|327196_328642_-	catalase	A0A2K9L0T1	Tupanvirus	2.0e-92	46.2
WP_011220375.1\|328947_329715_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	5.7e-38	40.1
WP_011220376.1\|329835_330441_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086000069.1\|330412_331985_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.4e-11	30.8
WP_041395644.1\|332677_332998_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	1.3e-15	45.7
WP_086000070.1\|332991_333270_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	1.3e-11	47.6
WP_011218334.1\|333365_333662_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011218059.1\|333661_334009_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_041394898.1\|334117_335662_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.9e-65	32.4
WP_011220382.1\|336126_336423_+	BrnT family toxin	NA	NA	NA	NA
WP_041394899.1\|336415_336625_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_011220383.1\|336675_338064_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	2.9e-48	29.2
WP_011220384.1\|338112_338424_+	hypothetical protein	NA	NA	NA	NA
WP_081470391.1\|338454_339048_+	hypothetical protein	NA	NA	NA	NA
WP_011220388.1\|340269_342105_+	MOSC domain-containing protein	R9TNA0	Synechococcus_phage	6.2e-06	35.1
WP_011220389.1\|342190_343639_-	hypothetical protein	NA	NA	NA	NA
WP_011220390.1\|343635_344661_-	endoglucanase	NA	NA	NA	NA
WP_011220391.1\|344657_346736_-	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
WP_011220392.1\|346732_348964_-	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA
WP_011220393.1\|348965_349493_-	hypothetical protein	NA	NA	NA	NA
WP_011220394.1\|349834_350779_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_011220395.1\|350957_352478_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011220396.1\|352728_354540_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011220397.1\|354774_355116_-	hypothetical protein	NA	NA	NA	NA
WP_041394900.1\|355112_355322_-	hypothetical protein	NA	NA	NA	NA
WP_172635999.1\|355699_357163_+	N-acetylglucosamine-binding protein GbpA	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.8e-16	31.6
WP_011220399.1\|357253_357790_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_006230542.1\|358261_358507_+	hypothetical protein	NA	NA	NA	NA
WP_006230540.1\|358525_358894_-	hypothetical protein	NA	NA	NA	NA
WP_041394903.1\|359006_360617_-\|transposase	transposase	NA	NA	NA	NA
WP_011220402.1\|360962_361628_+	carboxylesterase	NA	NA	NA	NA
WP_011220403.1\|361682_363053_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011220404.1\|363478_363688_+	hypothetical protein	NA	NA	NA	NA
WP_011220405.1\|363808_366778_-	DUF5110 domain-containing protein	NA	NA	NA	NA
WP_041394905.1\|367103_368471_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_011220407.1\|368635_369250_+	LysE family translocator	NA	NA	NA	NA
WP_041394907.1\|369449_370763_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_157134383.1\|371411_371558_-	hypothetical protein	NA	NA	NA	NA
WP_011220409.1\|372420_373785_-	Ktr system potassium transporter B	NA	NA	NA	NA
WP_011220410.1\|373786_374440_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_041394911.1\|374522_375215_-	response regulator transcription factor	NA	NA	NA	NA
WP_011220412.1\|375204_376248_-	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_041394913.1\|376785_377631_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_172636000.1\|377632_378250_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.7e-80	61.5
WP_011220414.1\|378257_380702_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.5e-214	47.7
WP_011220415.1\|381065_381650_+	molecular chaperone TorD family protein	A0A077SLS7	Escherichia_phage	5.0e-26	34.5
WP_011220416.1\|381649_382207_+	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	2.8e-26	38.8
WP_011220417.1\|382545_382923_+	STAS/SEC14 domain-containing protein	NA	NA	NA	NA
WP_011220418.1\|383100_383841_+	porin family protein	NA	NA	NA	NA
WP_011220419.1\|383988_384864_+	6-carboxytetrahydropterin synthase	A0A140B3G6	Vibrio_phage	5.9e-15	27.5
WP_011220420.1\|385002_385905_+	DMT family transporter	NA	NA	NA	NA
WP_011220421.1\|386035_386692_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_011220422.1\|386979_387723_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011220423.1\|387792_388527_+	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_011220425.1\|388962_389427_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_081470392.1\|389530_390004_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041394917.1\|390456_392067_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

618539 : 668214

Enterobacteria_phage(20.0%)

terminase,protease,integrase,transposase,tail,head

attL 614312:614328|attR 657487:657503

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
614312:614328	attL	NA	NA	NA	NA
WP_011220614.1\|618539_620150_-\|transposase	transposase	NA	NA	NA	NA
WP_011220618.1\|624873_625632_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011220621.1\|628329_628608_-	hypothetical protein	NA	NA	NA	NA
WP_011218608.1\|628614_629901_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041394989.1\|630434_632786_+	chitinase	Q9PYU0	Xestia_c-nigrum_granulosis_virus	3.3e-28	30.7
WP_011220623.1\|633177_634014_+	metal ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.7e-14	25.4
WP_006229276.1\|634010_634877_+	metal ABC transporter permease	NA	NA	NA	NA
WP_041394991.1\|634893_635886_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041394992.1\|636031_637159_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_157134458.1\|637163_637769_-	DUF1007 family protein	NA	NA	NA	NA
WP_011220627.1\|638106_638502_+	hypothetical protein	NA	NA	NA	NA
WP_011220628.1\|638743_639367_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011220631.1\|641434_642676_+\|integrase	integrase family protein	A5LH57	Enterobacteria_phage	3.7e-79	38.8
WP_011220632.1\|642717_643005_-	hypothetical protein	NA	NA	NA	NA
WP_011220633.1\|643030_643633_-	porin family protein	NA	NA	NA	NA
WP_041395679.1\|644007_644508_+	hypothetical protein	NA	NA	NA	NA
WP_011220636.1\|644913_645123_+	hypothetical protein	NA	NA	NA	NA
WP_011220637.1\|645429_646380_-	hypothetical protein	A0A1B1ITH5	uncultured_Mediterranean_phage	2.1e-29	30.5
WP_011220639.1\|647148_647403_+	hypothetical protein	NA	NA	NA	NA
WP_011220640.1\|647883_648039_+	hypothetical protein	NA	NA	NA	NA
WP_011220641.1\|648078_648384_+	helix-turn-helix transcriptional regulator	E5E3S9	Burkholderia_phage	8.4e-17	45.7
WP_011220642.1\|648364_649321_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_011220643.1\|649589_649823_-	hypothetical protein	NA	NA	NA	NA
WP_011220644.1\|649825_650002_-	hypothetical protein	NA	NA	NA	NA
WP_086000087.1\|650012_650954_-	recombinase RecT	K7PKR8	Enterobacteria_phage	1.7e-55	44.9
WP_011220646.1\|651070_654517_-	PD-(D/E)XK nuclease-like domain-containing protein	K7PJT5	Enterobacteria_phage	1.3e-33	40.3
WP_011220648.1\|654997_655327_-	hypothetical protein	NA	NA	NA	NA
WP_011220649.1\|655455_655677_+	hypothetical protein	NA	NA	NA	NA
WP_011220650.1\|655682_656573_+	hypothetical protein	A0A2I7S3S2	Vibrio_phage	1.7e-41	35.2
WP_172635984.1\|656580_656760_+	hypothetical protein	NA	NA	NA	NA
WP_011220652.1\|656905_657187_+	hypothetical protein	NA	NA	NA	NA
WP_011220653.1\|657292_657484_+	hypothetical protein	NA	NA	NA	NA
WP_011220654.1\|657669_658149_+\|terminase	terminase small subunit	A0A088C409	Shewanella_sp._phage	6.5e-16	41.1
657487:657503	attR	NA	NA	NA	NA
WP_011220655.1\|658148_659690_+	hypothetical protein	W6MW26	Pseudomonas_phage	1.6e-135	49.1
WP_011220656.1\|659705_659915_+	hypothetical protein	NA	NA	NA	NA
WP_011220657.1\|659917_661576_+\|head,tail	head-tail connector protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	7.8e-117	42.3
WP_011220658.1\|661575_661899_+	hypothetical protein	NA	NA	NA	NA
WP_011220659.1\|661888_662722_+\|protease	endoprotease	Q775C6	Bordetella_phage	4.8e-14	34.1
WP_011220660.1\|662736_663726_+	hypothetical protein	Q775C7	Bordetella_phage	2.9e-50	37.8
WP_011220661.1\|663792_664224_+	hypothetical protein	NA	NA	NA	NA
WP_011220662.1\|664235_664721_+	hypothetical protein	NA	NA	NA	NA
WP_011220663.1\|664831_665455_+	hypothetical protein	W6MVD9	Pseudomonas_phage	1.0e-16	29.2
WP_011220664.1\|665454_668214_+	hypothetical protein	Q858G3	Salmonella_phage	2.7e-138	31.8

DBSCAN-SWA_3

911169 : 1024516

Leptospira_phage(33.33%)

protease,tRNA,integrase,transposase

attL 969785:969802|attR 1016185:1016202

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011220861.1\|911169_911583_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_011220863.1\|912336_913221_+	aspartoacylase	NA	NA	NA	NA
WP_011220864.1\|913548_913983_+	VOC family protein	NA	NA	NA	NA
WP_041395734.1\|913997_914864_+	DMT family transporter	NA	NA	NA	NA
WP_011220866.1\|914901_915219_-	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_041395054.1\|915425_916700_+	membrane protein	NA	NA	NA	NA
WP_157134463.1\|917006_917642_-	hypothetical protein	NA	NA	NA	NA
WP_011220869.1\|918257_918770_-	hypothetical protein	NA	NA	NA	NA
WP_011220870.1\|918864_919617_-	nitroreductase family protein	NA	NA	NA	NA
WP_049789000.1\|919904_920552_+	hypothetical protein	NA	NA	NA	NA
WP_011220872.1\|921012_922713_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_011220873.1\|922849_924034_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.8e-78	41.4
WP_011220874.1\|924123_924582_-	hypothetical protein	NA	NA	NA	NA
WP_041395058.1\|924830_926261_+	sodium:proton antiporter NhaD	NA	NA	NA	NA
WP_041395060.1\|926494_927142_+	hypothetical protein	NA	NA	NA	NA
WP_065814500.1\|927197_928202_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_011220878.1\|928689_928992_+	hypothetical protein	NA	NA	NA	NA
WP_011220882.1\|931435_932275_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_011220885.1\|933982_935320_-	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA
WP_041395063.1\|935827_936514_+	hypothetical protein	NA	NA	NA	NA
WP_011220889.1\|937333_938599_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_011220890.1\|938718_939396_-	MaoC family dehydratase	NA	NA	NA	NA
WP_041395067.1\|940395_941505_+	serine hydrolase	NA	NA	NA	NA
WP_081470446.1\|941631_941871_+	ribosome alternative rescue factor ArfA	NA	NA	NA	NA
WP_081470331.1\|944010_945297_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011220898.1\|948365_950012_+	ABC-ATPase domain-containing protein	NA	NA	NA	NA
WP_011220899.1\|950188_951025_+	hypothetical protein	NA	NA	NA	NA
WP_172635986.1\|951295_951454_+	hypothetical protein	NA	NA	NA	NA
WP_041395068.1\|951454_951892_+	hypothetical protein	NA	NA	NA	NA
WP_011220902.1\|951922_952186_-	N-acetyltransferase	NA	NA	NA	NA
WP_011218608.1\|952169_953456_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041395070.1\|953951_954407_+	hypothetical protein	NA	NA	NA	NA
WP_041395742.1\|954502_954937_+	thioredoxin TrxC	NA	NA	NA	NA
WP_011220906.1\|955137_956052_+	cation diffusion facilitator family transporter	M1Q1N9	Streptococcus_phage	2.4e-06	25.9
WP_011217584.1\|956318_957269_+\|transposase	IS1595-like element ISPpr6 family transposase	NA	NA	NA	NA
WP_041395071.1\|958381_959926_+	EAL domain-containing protein	NA	NA	NA	NA
WP_011220909.1\|960074_961079_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_011220910.1\|961470_961956_+	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_157134464.1\|963243_964278_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041395073.1\|965326_965590_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157134393.1\|965642_965891_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011218334.1\|966613_966910_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011218059.1\|966909_967257_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_011220811.1\|967366_968911_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.2e-65	32.4
969785:969802	attL	NA	NA	NA	NA
WP_011220917.1\|969794_971405_-\|transposase	transposase	NA	NA	NA	NA
WP_011220919.1\|972714_973176_+	YdiL family protein	H9C180	Pectobacterium_phage	1.8e-18	43.2
WP_172635969.1\|973129_974164_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011220920.1\|974468_974711_+	hypothetical protein	NA	NA	NA	NA
WP_011220921.1\|974827_976165_-	sensor histidine kinase	NA	NA	NA	NA
WP_011220923.1\|976812_977163_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_157134394.1\|977460_979593_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_011220925.1\|979714_981619_+	nitrous-oxide reductase	NA	NA	NA	NA
WP_011220926.1\|981803_983123_+	nitrous oxide reductase family maturation protein NosD	NA	NA	NA	NA
WP_041395075.1\|983133_984126_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-31	38.3
WP_011220928.1\|984122_984941_+	ABC transporter permease	NA	NA	NA	NA
WP_011220929.1\|985017_985518_+	nitrous oxide reductase accessory protein NosL	NA	NA	NA	NA
WP_006230017.1\|985709_985988_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011220931.1\|986066_986309_-	hypothetical protein	NA	NA	NA	NA
WP_011220932.1\|986579_987470_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011220933.1\|987472_987751_-	hypothetical protein	NA	NA	NA	NA
WP_157134395.1\|987856_988231_-	hypothetical protein	NA	NA	NA	NA
WP_011220935.1\|988368_989670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011220936.1\|989942_990482_-	hypothetical protein	NA	NA	NA	NA
WP_011220937.1\|990631_991369_-	GMP synthase	NA	NA	NA	NA
WP_011220938.1\|991433_992591_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_011220939.1\|992645_994055_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_011220940.1\|994112_995480_-	glutamine synthetase	NA	NA	NA	NA
WP_011220941.1\|995800_996619_+	cytochrome c	NA	NA	NA	NA
WP_049789004.1\|996700_997651_+\|transposase	IS1595-like element ISPpr6 family transposase	NA	NA	NA	NA
WP_011220944.1\|998700_1000563_+	phosphatidylinositol-specific phospholipase C domain-containing protein	NA	NA	NA	NA
WP_011218608.1\|1001023_1002310_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011220946.1\|1003079_1004015_-	siroheme synthase	NA	NA	NA	NA
WP_011220947.1\|1004187_1004919_+\|integrase	site-specific integrase	A0A1B3B212	Gordonia_phage	1.7e-07	25.2
WP_011220948.1\|1004915_1005968_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011220949.1\|1006423_1007548_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011220950.1\|1007547_1010703_+	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.7e-67	24.6
WP_041395078.1\|1010878_1011982_-\|protease	trypsin-like serine protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	5.2e-08	25.4
WP_011220952.1\|1012227_1013052_+	hypothetical protein	NA	NA	NA	NA
WP_041395758.1\|1013156_1013744_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_011220954.1\|1013829_1014819_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_065814487.1\|1015209_1015710_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041395079.1\|1015706_1015979_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011220614.1\|1016332_1017943_+\|transposase	transposase	NA	NA	NA	NA
1016185:1016202	attR	NA	NA	NA	NA
WP_011220957.1\|1018016_1018862_+	sulfurtransferase	NA	NA	NA	NA
WP_041395081.1\|1019225_1020053_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011218608.1\|1020964_1022251_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011220614.1\|1022905_1024516_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1050744 : 1100005

Vibrio_phage(25.0%)

protease,integrase,transposase

attL 1045269:1045287|attR 1109027:1109045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1045269:1045287	attL	NA	NA	NA	NA
WP_011220983.1\|1050744_1052130_+\|transposase	IS4-like element ISPpr3 family transposase	Q9JMP3	Wolbachia_phage	6.2e-51	29.4
WP_011220984.1\|1052204_1053041_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-56	47.4
WP_011220985.1\|1053254_1053779_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA
WP_011220986.1\|1053803_1054340_+	hypothetical protein	NA	NA	NA	NA
WP_011220987.1\|1054380_1055058_-	AraC family ligand binding domain-containing protein	NA	NA	NA	NA
WP_011220988.1\|1055330_1056443_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011220989.1\|1056552_1057179_-	OmpA family protein	NA	NA	NA	NA
WP_011218608.1\|1057415_1058702_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011220991.1\|1059827_1060142_-	hypothetical protein	NA	NA	NA	NA
WP_157134465.1\|1060389_1061151_-	hypothetical protein	NA	NA	NA	NA
WP_011220993.1\|1061491_1062385_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011220994.1\|1062532_1065262_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172635948.1\|1065767_1066803_-\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	9.5e-12	66.0
WP_011220995.1\|1067236_1067776_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_011220996.1\|1067862_1068426_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_011220997.1\|1068647_1069640_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_041395096.1\|1069872_1070097_+	DUF2559 family protein	NA	NA	NA	NA
WP_011220998.1\|1070086_1070722_+	putative adenosine monophosphate-protein transferase Fic	NA	NA	NA	NA
WP_041395775.1\|1070761_1071733_-\|integrase	tyrosine-type recombinase/integrase	Q5QBN6	Enterobacteria_phage	4.0e-20	24.4
WP_041395099.1\|1071982_1072348_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_011221001.1\|1072468_1072981_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011221002.1\|1073092_1073698_-	HAD family phosphatase	NA	NA	NA	NA
WP_041395101.1\|1073817_1074141_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_011221004.1\|1074737_1075187_+	phage protein	NA	NA	NA	NA
WP_011221005.1\|1075338_1076031_+	hypothetical protein	NA	NA	NA	NA
WP_011221006.1\|1076061_1077018_-	hypothetical protein	NA	NA	NA	NA
WP_041395105.1\|1077334_1077547_-	hypothetical protein	NA	NA	NA	NA
WP_041395777.1\|1077626_1078052_-	virion protein	A0A2P1CKV1	Pseudoalteromonas_phage	3.6e-18	43.7
WP_041395107.1\|1078231_1078825_-	hypothetical protein	NA	NA	NA	NA
WP_157134397.1\|1078821_1079529_-	hypothetical protein	NA	NA	NA	NA
WP_011221010.1\|1079528_1080041_-	hypothetical protein	NA	NA	NA	NA
WP_011221012.1\|1081215_1081566_-	hypothetical protein	NA	NA	NA	NA
WP_041395109.1\|1081565_1081775_-	hypothetical protein	NA	NA	NA	NA
WP_157134399.1\|1081771_1081921_-	hypothetical protein	NA	NA	NA	NA
WP_011221013.1\|1081921_1082194_-	hypothetical protein	NA	NA	NA	NA
WP_011221014.1\|1082203_1083037_-	hypothetical protein	NA	NA	NA	NA
WP_157134400.1\|1083574_1083970_-	hypothetical protein	NA	NA	NA	NA
WP_041395781.1\|1084102_1084738_-	ATP-binding protein	NA	NA	NA	NA
WP_011221017.1\|1084764_1085238_-	hypothetical protein	NA	NA	NA	NA
WP_011221018.1\|1085262_1085754_-	hypothetical protein	NA	NA	NA	NA
WP_172635987.1\|1085746_1085923_-	hypothetical protein	NA	NA	NA	NA
WP_041395111.1\|1085937_1087653_-	hypothetical protein	A0A2I7RNF8	Vibrio_phage	2.9e-122	40.7
WP_157134401.1\|1087639_1087807_-	hypothetical protein	NA	NA	NA	NA
WP_011221020.1\|1087806_1088097_-	hypothetical protein	NA	NA	NA	NA
WP_157134402.1\|1088093_1088270_-	hypothetical protein	NA	NA	NA	NA
WP_011221021.1\|1088411_1088675_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157134403.1\|1090160_1090328_-	hypothetical protein	NA	NA	NA	NA
WP_011221024.1\|1090379_1090652_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_006229719.1\|1090644_1090908_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_011221026.1\|1091549_1092206_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_011221027.1\|1092381_1092777_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011221028.1\|1093120_1093444_-	hypothetical protein	NA	NA	NA	NA
WP_006229715.1\|1093647_1094523_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.2e-29	34.8
WP_041395114.1\|1094756_1095296_+	DUF1439 domain-containing protein	NA	NA	NA	NA
WP_011221030.1\|1095343_1095640_-	hypothetical protein	NA	NA	NA	NA
WP_011221031.1\|1095855_1097022_-	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	1.9e-08	44.3
WP_006229711.1\|1097500_1098427_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081470403.1\|1098718_1100005_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
1109027:1109045	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1282414 : 1339551

Streptococcus_phage(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041395171.1\|1282414_1284025_+\|transposase	transposase	NA	NA	NA	NA
WP_011221199.1\|1284106_1284565_+	hypothetical protein	NA	NA	NA	NA
WP_157134407.1\|1284725_1285427_-	methyltransferase domain-containing protein	A0A1X9I669	Streptococcus_phage	1.6e-07	23.9
WP_041395173.1\|1285636_1285843_+	hypothetical protein	NA	NA	NA	NA
WP_011221201.1\|1286039_1286579_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_172635988.1\|1287144_1287564_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011218608.1\|1287697_1288984_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011221203.1\|1289114_1289363_-	hypothetical protein	U3PFK6	Vibrio_phage	3.1e-09	49.1
WP_011221204.1\|1289683_1290271_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.4e-23	34.3
WP_086000076.1\|1290364_1291938_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.4e-11	30.8
WP_011221207.1\|1291949_1292657_-	CHASE3 domain-containing protein	NA	NA	NA	NA
WP_011221208.1\|1292832_1293177_+	hypothetical protein	NA	NA	NA	NA
WP_086000077.1\|1293173_1294608_+\|transposase	IS66-like element ISPpr14 family transposase	NA	NA	NA	NA
WP_041395818.1\|1295113_1296061_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_011221211.1\|1296740_1297901_+	MFS transporter	NA	NA	NA	NA
WP_081470447.1\|1298631_1300167_-	response regulator	A0A1V0SGX0	Hokovirus	2.7e-47	29.6
WP_011221213.1\|1300342_1301335_-	hypothetical protein	NA	NA	NA	NA
WP_011221214.1\|1301438_1301924_+	hypothetical protein	NA	NA	NA	NA
WP_011221215.1\|1301928_1302975_+	porin	A0A1C3NFI8	Phage_NCTB	8.4e-16	33.2
WP_041395823.1\|1303253_1304159_-	ROK family protein	NA	NA	NA	NA
WP_011221217.1\|1304502_1304718_+	hypothetical protein	NA	NA	NA	NA
WP_011221218.1\|1304881_1305304_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011221219.1\|1305638_1306634_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_011221220.1\|1306733_1307327_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_011221221.1\|1307326_1308973_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_011221222.1\|1308965_1310354_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_011221223.1\|1310683_1312069_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.4e-50	29.4
WP_011221224.1\|1312210_1312549_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_011221225.1\|1312541_1313354_-	phenylalanine 4-monooxygenase	NA	NA	NA	NA
WP_041395827.1\|1313901_1315056_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_011221227.1\|1315145_1316168_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_011221228.1\|1316189_1316849_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_011221229.1\|1316937_1318944_+	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_011221230.1\|1319120_1320113_+	GTP-binding protein	NA	NA	NA	NA
WP_041395177.1\|1320205_1321591_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_011221232.1\|1321590_1322934_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_011221233.1\|1323279_1323774_+	hypothetical protein	NA	NA	NA	NA
WP_011221235.1\|1325578_1326643_-	L-asparaginase 2	NA	NA	NA	NA
WP_011221236.1\|1326902_1327154_-	hypothetical protein	NA	NA	NA	NA
WP_011221237.1\|1327545_1328022_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011221238.1\|1328154_1328577_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_011221239.1\|1328709_1329162_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_041395181.1\|1329638_1330658_+	hypothetical protein	NA	NA	NA	NA
WP_041395183.1\|1330815_1331886_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_011221242.1\|1332249_1333227_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_041395829.1\|1333316_1333799_-	glutathione peroxidase	Q70H87	Fowlpox_virus	2.8e-22	38.4
WP_011221244.1\|1333944_1334505_+	hypothetical protein	NA	NA	NA	NA
WP_041395185.1\|1334685_1335705_-	adenosine deaminase	NA	NA	NA	NA
WP_011221246.1\|1335904_1337002_+	AI-2E family transporter	NA	NA	NA	NA
WP_041395186.1\|1337190_1337718_+	DUF3087 domain-containing protein	NA	NA	NA	NA
WP_041395831.1\|1338573_1339551_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.9e-31	28.3

DBSCAN-SWA_6

1348084 : 1394264

uncultured_Caudovirales_phage(14.29%)

protease,tRNA,integrase,transposase

attL 1348543:1348557|attR 1376293:1376307

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011221259.1\|1348084_1349209_-\|transposase	ISAs1-like element ISPpr12 family transposase	NA	NA	NA	NA
1348543:1348557	attL	NA	NA	NA	NA
WP_011221260.1\|1349927_1350176_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011221261.1\|1350165_1350456_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.9e-18	52.7
WP_011218608.1\|1351008_1352295_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_157134408.1\|1354298_1354472_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_011221264.1\|1354595_1355495_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006229498.1\|1355501_1356377_-	metal ABC transporter permease	NA	NA	NA	NA
WP_172636005.1\|1356376_1357138_-	metal ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	2.4e-12	28.8
WP_011221266.1\|1357137_1358097_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011221267.1\|1358163_1358748_-	hypothetical protein	NA	NA	NA	NA
WP_011221268.1\|1358744_1359077_-	hypothetical protein	NA	NA	NA	NA
WP_041395838.1\|1359203_1360040_-	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_011221270.1\|1360148_1360685_-	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_011221271.1\|1360724_1361351_-	PepSY-associated TM helix domain-containing protein	NA	NA	NA	NA
WP_049789014.1\|1361672_1362098_+	hypothetical protein	NA	NA	NA	NA
WP_041395193.1\|1362225_1362879_+	DedA family protein	NA	NA	NA	NA
WP_011221274.1\|1362950_1364117_-	hypothetical protein	NA	NA	NA	NA
WP_041395842.1\|1364122_1364737_-	energy transducer TonB	NA	NA	NA	NA
WP_011221276.1\|1364805_1365210_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_011221277.1\|1365206_1365740_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_011221278.1\|1365739_1367104_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_011221279.1\|1367106_1367889_-	DUF3450 domain-containing protein	NA	NA	NA	NA
WP_011221280.1\|1368283_1370380_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_011218428.1\|1370662_1371694_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011221281.1\|1372075_1372996_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041395843.1\|1373846_1375292_-	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_011221283.1\|1375703_1377077_+\|tRNA	cysteine--tRNA ligase	F1C979	Terra1_virus	2.3e-37	31.7
1376293:1376307	attR	NA	NA	NA	NA
WP_006230040.1\|1377373_1377754_+	PH domain-containing protein	A5GZ63	Lactococcus_phage	1.3e-06	45.3
WP_011221284.1\|1377862_1378411_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_041395845.1\|1378630_1379260_+	3'-5' exonuclease	A0A0A7RWA3	Clostridium_phage	2.3e-24	38.0
WP_041395847.1\|1379339_1379723_-	DoxX family protein	NA	NA	NA	NA
WP_049789060.1\|1380033_1381056_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_041395196.1\|1381324_1382722_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.9e-53	35.5
WP_172635989.1\|1382953_1383175_-	DUF2986 domain-containing protein	NA	NA	NA	NA
WP_011221290.1\|1383614_1385525_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_011221291.1\|1385908_1386382_-	PaaI family thioesterase	NA	NA	NA	NA
WP_081470408.1\|1386495_1387503_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_049789015.1\|1387650_1388151_-	hypothetical protein	NA	NA	NA	NA
WP_011221294.1\|1388143_1388467_-	DUF134 domain-containing protein	NA	NA	NA	NA
WP_011221296.1\|1389400_1389715_+	hypothetical protein	NA	NA	NA	NA
WP_041395197.1\|1391426_1392044_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_011221300.1\|1392070_1392409_-	DUF1840 domain-containing protein	NA	NA	NA	NA
WP_041395199.1\|1392465_1393047_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_081470448.1\|1393333_1393726_+	DoxX family protein	NA	NA	NA	NA
WP_041393917.1\|1393835_1394264_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0

DBSCAN-SWA_7

1416976 : 1450153

Burkholderia_phage(18.75%)

terminase,capsid,portal,protease,integrase,transposase,tail,head

attL 1408451:1408466|attR 1431184:1431199

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1408451:1408466	attL	NA	NA	NA	NA
WP_011221325.1\|1416976_1418218_+\|integrase	integrase family protein	A5LH57	Enterobacteria_phage	2.6e-72	35.8
WP_011221326.1\|1418387_1419437_-	hypothetical protein	R9TG40	Synechococcus_phage	2.2e-08	48.5
WP_041395210.1\|1419433_1419865_-	hypothetical protein	NA	NA	NA	NA
WP_011221328.1\|1419867_1423752_-	hypothetical protein	C4ML20	Xanthomonas_virus	3.3e-57	25.1
WP_049789019.1\|1423739_1424132_-	hypothetical protein	NA	NA	NA	NA
WP_011221329.1\|1424131_1424608_-	DUF1833 domain-containing protein	Q52PL0	Xanthomonas_phage	1.1e-10	27.9
WP_011221330.1\|1424608_1424968_-	hypothetical protein	NA	NA	NA	NA
WP_011221331.1\|1424964_1427370_-\|tail	phage tail length tape measure family protein	A0A2H4J9A1	uncultured_Caudovirales_phage	3.3e-47	26.6
WP_011221332.1\|1427366_1427675_-	DUF1799 domain-containing protein	A0A1S5R1G7	Pseudomonas_phage	5.5e-08	41.1
WP_011221333.1\|1427692_1428067_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_011221334.1\|1428076_1428715_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	2.5e-47	47.7
WP_157134412.1\|1428724_1429084_-	hypothetical protein	NA	NA	NA	NA
WP_041395212.1\|1429080_1429578_-	hypothetical protein	NA	NA	NA	NA
WP_011221337.1\|1429574_1429895_-\|head	phage head closure protein	A0A088F713	Idiomarinaceae_phage	3.5e-05	26.5
WP_011221338.1\|1429894_1430212_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_049789020.1\|1430217_1430421_-	hypothetical protein	NA	NA	NA	NA
WP_011221340.1\|1430479_1431742_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	1.9e-99	47.7
1431184:1431199	attR	NA	NA	NA	NA
WP_157134413.1\|1431755_1432553_-\|protease	ATP-dependent Clp protease proteolytic subunit	C7BGG9	Burkholderia_phage	6.6e-45	46.1
WP_041395215.1\|1432539_1433805_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	5.2e-52	34.0
WP_041395216.1\|1433805_1435473_-\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	4.7e-162	52.2
WP_011221344.1\|1435475_1435904_-	hypothetical protein	NA	NA	NA	NA
WP_011221345.1\|1436078_1436393_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.6e-10	47.2
WP_041395218.1\|1436611_1437013_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011221347.1\|1437003_1437675_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_011221348.1\|1437939_1438479_-	hypothetical protein	NA	NA	NA	NA
WP_041395220.1\|1438592_1439054_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011221350.1\|1439199_1439673_-	GrpB family protein	NA	NA	NA	NA
WP_041393917.1\|1440362_1440791_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_041395222.1\|1442110_1442590_-	hypothetical protein	A0A2I7RHR1	Vibrio_phage	4.2e-71	85.9
WP_011221353.1\|1442586_1443147_-	N-acetylmuramoyl-L-alanine amidase	A0A2I7RHK5	Vibrio_phage	1.2e-74	73.9
WP_011221354.1\|1443188_1443440_-	hypothetical protein	NA	NA	NA	NA
WP_011221355.1\|1443812_1444307_-	YcxB family protein	NA	NA	NA	NA
WP_011221356.1\|1445114_1445912_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011221357.1\|1445990_1446299_-	hypothetical protein	NA	NA	NA	NA
WP_011221358.1\|1446724_1447063_+	hypothetical protein	NA	NA	NA	NA
WP_170107630.1\|1447430_1447583_+	hypothetical protein	NA	NA	NA	NA
WP_011220284.1\|1448866_1450153_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1509245 : 1541676

Emiliania_huxleyi_virus(100.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011218608.1\|1509245_1510532_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011221405.1\|1510644_1512321_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_041395245.1\|1512464_1513475_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_041395877.1\|1513694_1514612_-	M14 family metallocarboxypeptidase	NA	NA	NA	NA
WP_011220284.1\|1515256_1516543_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_041395246.1\|1518021_1519632_-\|transposase	transposase	NA	NA	NA	NA
WP_011221411.1\|1521384_1522437_-	alkene reductase	NA	NA	NA	NA
WP_041395248.1\|1522594_1523176_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_157134415.1\|1523298_1523475_+	hypothetical protein	NA	NA	NA	NA
WP_011221413.1\|1523516_1523780_-	hypothetical protein	NA	NA	NA	NA
WP_011221414.1\|1523928_1524501_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011221415.1\|1524952_1525720_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_041395249.1\|1525732_1526446_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011221417.1\|1526433_1529496_+	tetrathionate reductase subunit TtrA	NA	NA	NA	NA
WP_157134473.1\|1530120_1531113_+	lipoate--protein ligase	NA	NA	NA	NA
WP_011221419.1\|1531857_1533099_+	cytosine permease	NA	NA	NA	NA
WP_011221420.1\|1533119_1534409_+	cytosine deaminase	NA	NA	NA	NA
WP_011221421.1\|1534551_1535757_-\|protease	serine protease	V5LQ56	Emiliania_huxleyi_virus	1.2e-13	26.8
WP_011221422.1\|1535980_1536466_-	hypothetical protein	NA	NA	NA	NA
WP_041395251.1\|1536507_1537392_-\|transposase	IS1595-like element ISPpr5 family transposase	NA	NA	NA	NA
WP_011221424.1\|1537713_1538718_-	adenosine deaminase	NA	NA	NA	NA
WP_157134416.1\|1538984_1539236_-	hypothetical protein	NA	NA	NA	NA
WP_011221426.1\|1539557_1540106_+	DUF2975 domain-containing protein	NA	NA	NA	NA
WP_011221427.1\|1540115_1540340_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011218608.1\|1540389_1541676_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1545027 : 1600165

Sulfolobus_monocaudavirus(18.18%)

integrase,transposase

attL 1540378:1540396|attR 1606401:1606419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1540378:1540396	attL	NA	NA	NA	NA
WP_086000079.1\|1545027_1546601_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.2e-10	30.8
WP_011221432.1\|1546838_1547102_-	hypothetical protein	NA	NA	NA	NA
WP_011221433.1\|1547112_1547442_-	hypothetical protein	NA	NA	NA	NA
WP_081470413.1\|1548085_1548589_+	hypothetical protein	NA	NA	NA	NA
WP_041395255.1\|1548547_1549432_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_011221436.1\|1550469_1550850_-	hypothetical protein	NA	NA	NA	NA
WP_011221437.1\|1550980_1551406_-	hypothetical protein	NA	NA	NA	NA
WP_011221438.1\|1551407_1551836_-	hypothetical protein	NA	NA	NA	NA
WP_157134417.1\|1552672_1552885_-	hypothetical protein	NA	NA	NA	NA
WP_011221439.1\|1552884_1553772_+\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	1.9e-21	25.6
WP_011221440.1\|1553768_1554821_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011221444.1\|1557257_1557557_-	hypothetical protein	NA	NA	NA	NA
WP_011221445.1\|1558195_1558573_+	hypothetical protein	NA	NA	NA	NA
WP_011221446.1\|1558666_1560004_-	GTPase HflX	NA	NA	NA	NA
WP_011221447.1\|1560175_1560649_-	PaaI family thioesterase	NA	NA	NA	NA
WP_011221448.1\|1560652_1560943_-	DUF134 domain-containing protein	NA	NA	NA	NA
WP_011221449.1\|1561193_1563005_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.1e-63	31.8
WP_011221450.1\|1563234_1564632_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011221451.1\|1564922_1566254_-	D-serine ammonia-lyase	NA	NA	NA	NA
WP_172635969.1\|1567371_1568406_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011221454.1\|1568983_1570060_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_011221455.1\|1570158_1571271_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_086000081.1\|1571506_1571764_-	YdcH family protein	NA	NA	NA	NA
WP_011221457.1\|1572172_1573441_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	A0A0B5JD48	Pandoravirus	3.8e-10	23.3
WP_011221458.1\|1573585_1574764_-	hypothetical protein	NA	NA	NA	NA
WP_011221459.1\|1575476_1576445_+	nucleoside hydrolase	NA	NA	NA	NA
WP_041395264.1\|1576503_1577385_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011221461.1\|1577478_1577901_+	PACE efflux transporter	NA	NA	NA	NA
WP_041395889.1\|1577987_1578470_+	GreA/GreB family elongation factor	NA	NA	NA	NA
WP_011221463.1\|1578640_1579627_-	arginase family protein	NA	NA	NA	NA
WP_086000092.1\|1579657_1580170_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_041393917.1\|1580303_1580732_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_006230267.1\|1581333_1581723_+	VF530 family DNA-binding protein	NA	NA	NA	NA
WP_011221465.1\|1581954_1582716_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011221466.1\|1582841_1583168_+	hypothetical protein	NA	NA	NA	NA
WP_011221467.1\|1583188_1583650_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157134418.1\|1583940_1584978_-	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_041395267.1\|1585007_1586060_-	HlyD family secretion protein	NA	NA	NA	NA
WP_011221470.1\|1586337_1587231_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011221471.1\|1587264_1588161_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041395269.1\|1588365_1588677_+	monooxygenase	NA	NA	NA	NA
WP_011221473.1\|1588681_1589053_+	hypothetical protein	NA	NA	NA	NA
WP_011221474.1\|1589312_1589813_+	DUF917 family protein	NA	NA	NA	NA
WP_041395273.1\|1590650_1590869_-	hypothetical protein	NA	NA	NA	NA
WP_011221475.1\|1590921_1591470_-	hypothetical protein	NA	NA	NA	NA
WP_172635990.1\|1591742_1591892_-	hypothetical protein	NA	NA	NA	NA
WP_011221476.1\|1591996_1592362_-	hypothetical protein	NA	NA	NA	NA
WP_011221477.1\|1592387_1592750_-	VRR-NUC domain-containing protein	A0A1B1IMH1	Lactococcus_phage	5.9e-09	38.5
WP_011221478.1\|1593334_1594897_-	AAA family ATPase	A0A2I7R721	Vibrio_phage	5.2e-78	39.0
WP_065814494.1\|1594893_1595748_-	PD-(D/E)XK nuclease-like domain-containing protein	G8CLD3	Synechococcus_phage	4.7e-49	44.7
WP_041395275.1\|1595734_1595947_-	hypothetical protein	NA	NA	NA	NA
WP_011221480.1\|1595960_1596743_-	hypothetical protein	NA	NA	NA	NA
WP_011221482.1\|1597023_1597554_-	hypothetical protein	NA	NA	NA	NA
WP_041395277.1\|1597550_1598354_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	1.1e-31	34.9
WP_041393917.1\|1598560_1598989_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_172635948.1\|1599130_1600165_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	9.5e-12	66.0
1606401:1606419	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1606939 : 1644287

Leptospira_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011221488.1\|1606939_1608550_-\|transposase	transposase	NA	NA	NA	NA
WP_157134474.1\|1608837_1609872_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_086000049.1\|1610873_1612446_+\|transposase	IS3-like element ISPpr7 family transposase	U5P429	Shigella_phage	9.4e-11	30.8
WP_011221491.1\|1612758_1613967_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_011221493.1\|1614502_1615012_-	porin family protein	NA	NA	NA	NA
WP_011221494.1\|1615461_1616514_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-43	45.9
WP_011221495.1\|1616772_1617456_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_011221496.1\|1617847_1619143_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_011221497.1\|1619588_1620896_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_041395292.1\|1621526_1621706_-	ATPase	NA	NA	NA	NA
WP_157134421.1\|1621842_1622148_-	hypothetical protein	NA	NA	NA	NA
WP_011221500.1\|1622428_1623571_+	hypothetical protein	NA	NA	NA	NA
WP_011218058.1\|1623589_1625134_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.5e-65	32.3
WP_011218059.1\|1625242_1625590_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_011218334.1\|1626753_1627050_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041395294.1\|1627124_1627367_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011221502.1\|1627517_1628540_-	patatin-like phospholipase family protein	A0A1V0SKV5	Klosneuvirus	3.8e-37	29.6
WP_011221503.1\|1628660_1629467_-	hypothetical protein	NA	NA	NA	NA
WP_011221504.1\|1629715_1630804_-	alpha-helical pore-forming toxin family protein	NA	NA	NA	NA
WP_011217183.1\|1631240_1632464_-\|transposase	IS4-like element ISPpr1 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.4e-102	50.9
WP_011221506.1\|1632515_1632902_+	hypothetical protein	NA	NA	NA	NA
WP_011221508.1\|1633660_1635643_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA
WP_041395296.1\|1635626_1636655_-	glutathione synthase	NA	NA	NA	NA
WP_011221510.1\|1636778_1637129_-	DUF413 domain-containing protein	NA	NA	NA	NA
WP_011221511.1\|1637294_1638155_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_172635992.1\|1638471_1638633_+	hypothetical protein	NA	NA	NA	NA
WP_011218334.1\|1638817_1639114_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011218059.1\|1639113_1639461_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-21	48.1
WP_157134464.1\|1643252_1644287_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1672297 : 1719532

Sulfolobus_monocaudavirus(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172635969.1\|1672297_1673332_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_081470418.1\|1673360_1674647_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011221548.1\|1675367_1676318_+\|transposase	IS1595-like element ISPpr6 family transposase	NA	NA	NA	NA
WP_041395319.1\|1676774_1677482_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011221550.1\|1677520_1678306_+	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
WP_011221551.1\|1678315_1679494_+	hypothetical protein	NA	NA	NA	NA
WP_011221552.1\|1679514_1679796_+	hypothetical protein	NA	NA	NA	NA
WP_041393917.1\|1679874_1680303_+\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011221553.1\|1680834_1681602_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	2.4e-12	24.7
WP_011221554.1\|1681614_1682529_+	hypothetical protein	NA	NA	NA	NA
WP_011221555.1\|1682534_1684844_+	MMPL family transporter	NA	NA	NA	NA
WP_011221557.1\|1685644_1686130_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011221558.1\|1686383_1687247_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041395324.1\|1688009_1688567_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041395326.1\|1688614_1690450_-	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	1.1e-13	24.2
WP_011221562.1\|1690446_1691862_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_011221563.1\|1692629_1693052_+	GrdX family protein	NA	NA	NA	NA
WP_081470419.1\|1693155_1694454_-	glycine/betaine/sarcosine/D-proline family reductase selenoprotein B	NA	NA	NA	NA
WP_041395331.1\|1694467_1695760_-	glycine/sarcosine/betaine reductase component B subunit	NA	NA	NA	NA
WP_081470420.1\|1695832_1696879_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_011221567.1\|1697014_1698211_-	glycine/sarcosine/betaine reductase complex protein C subunit alpha	NA	NA	NA	NA
WP_011221568.1\|1698223_1699759_-	ketoacyl-ACP synthase III family protein	NA	NA	NA	NA
WP_081470449.1\|1699864_1700329_-	glycine/sarcosine/betaine reductase complex selenoprotein A	NA	NA	NA	NA
WP_081450071.1\|1700343_1700829_-	glycine/sarcosine/betaine reductase complex selenoprotein A	NA	NA	NA	NA
WP_011221570.1\|1700930_1701257_-	thioredoxin family protein	NA	NA	NA	NA
WP_011221571.1\|1701266_1702478_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.8e-68	43.7
WP_011221572.1\|1703459_1704872_+	aminopeptidase	NA	NA	NA	NA
WP_011221573.1\|1705097_1705454_-	DsrE family protein	NA	NA	NA	NA
WP_011221574.1\|1705589_1706381_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_172635994.1\|1706415_1706652_-	hypothetical protein	NA	NA	NA	NA
WP_011221576.1\|1707133_1707553_+	D-ribose pyranase	NA	NA	NA	NA
WP_011221577.1\|1707588_1709103_+	ribose ABC transporter ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	4.9e-17	26.8
WP_011221578.1\|1709099_1710089_+	ribose ABC transporter permease	NA	NA	NA	NA
WP_011221579.1\|1710188_1711067_+	ribose ABC transporter substrate-binding protein RbsB	C6ZCU4	Enterobacteria_phage	2.3e-06	23.9
WP_011221580.1\|1711222_1712143_+	ribokinase	NA	NA	NA	NA
WP_011221581.1\|1712286_1713288_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_041395337.1\|1713408_1714143_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_011221584.1\|1715456_1716689_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041393917.1\|1716870_1717299_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_081470421.1\|1718245_1719532_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1788665 : 1918963

101

uncultured_marine_virus(19.05%)

holin,integrase,transposase

attL 1806709:1806724|attR 1876459:1876478

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011221656.1\|1788665_1789694_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011221658.1\|1790354_1790921_+	HD domain-containing protein	NA	NA	NA	NA
WP_041395368.1\|1791059_1791368_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011221660.1\|1791475_1792816_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011221661.1\|1792825_1793593_+	oxidoreductase	M1PY53	Moumouvirus	5.8e-06	37.5
WP_011221662.1\|1793608_1794757_+	radical SAM protein	NA	NA	NA	NA
WP_011221663.1\|1794885_1795506_-	LysE family translocator	NA	NA	NA	NA
WP_011221666.1\|1797647_1798739_-	alkene reductase	NA	NA	NA	NA
WP_041395370.1\|1798741_1799845_-	alkene reductase	NA	NA	NA	NA
WP_041395372.1\|1799971_1800853_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011221670.1\|1801779_1802310_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049789033.1\|1802937_1803459_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	9.3e-32	41.8
WP_011221673.1\|1803743_1804112_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041395375.1\|1804345_1804909_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011221675.1\|1804921_1805506_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011221676.1\|1806248_1806599_+	DUF3316 domain-containing protein	NA	NA	NA	NA
1806709:1806724	attL	NA	NA	NA	NA
WP_081470427.1\|1806901_1807603_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	9.5e-40	44.1
1806709:1806724	attL	NA	NA	NA	NA
WP_011221679.1\|1807937_1808231_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_011221681.1\|1809666_1810092_-	riboflavin-specific deaminase	A0A2I2L4R9	Orpheovirus	1.6e-18	35.9
WP_011221682.1\|1810675_1810972_-	Dabb family protein	NA	NA	NA	NA
WP_041395378.1\|1811050_1811803_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_081470428.1\|1811814_1812207_-	heme-binding protein	NA	NA	NA	NA
WP_011221685.1\|1812313_1813009_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_041395380.1\|1814271_1814910_-	hypothetical protein	NA	NA	NA	NA
WP_011221687.1\|1815105_1815474_-	hypothetical protein	NA	NA	NA	NA
WP_157134428.1\|1815473_1815740_-	hypothetical protein	NA	NA	NA	NA
WP_041395386.1\|1816113_1816359_-	hypothetical protein	NA	NA	NA	NA
WP_049789034.1\|1816355_1816631_-	hypothetical protein	NA	NA	NA	NA
WP_041395388.1\|1816726_1817026_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	1.5e-18	51.5
WP_041395390.1\|1817098_1818073_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.0e-87	48.8
WP_041395392.1\|1818252_1819425_+	cation:proton antiporter	NA	NA	NA	NA
WP_011221693.1\|1819584_1822656_-	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	3.4e-17	23.8
WP_011221694.1\|1822652_1823738_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011221695.1\|1823740_1824808_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011221696.1\|1825422_1826646_-	HlyD family secretion protein	NA	NA	NA	NA
WP_011221697.1\|1826638_1827016_-	hypothetical protein	NA	NA	NA	NA
WP_041395395.1\|1827214_1828228_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011221699.1\|1828237_1828750_-	hypothetical protein	NA	NA	NA	NA
WP_011221700.1\|1829042_1829978_+	universal stress protein	NA	NA	NA	NA
WP_011221701.1\|1830304_1831792_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.1e-24	26.7
WP_011217183.1\|1834045_1835269_-\|transposase	IS4-like element ISPpr1 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.4e-102	50.9
1833970:1833985	attR	NA	NA	NA	NA
WP_011220747.1\|1835300_1836566_+\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
1833970:1833985	attR	NA	NA	NA	NA
WP_041395397.1\|1836572_1837187_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_011221704.1\|1837720_1838518_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011221357.1\|1838596_1838905_-	hypothetical protein	NA	NA	NA	NA
WP_011221705.1\|1839385_1840273_+\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	1.9e-21	25.6
WP_011220948.1\|1840269_1841322_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_041395399.1\|1841544_1843155_+\|transposase	transposase	NA	NA	NA	NA
WP_157134429.1\|1844035_1844203_-	hypothetical protein	NA	NA	NA	NA
WP_041395402.1\|1844256_1844790_-	hypothetical protein	NA	NA	NA	NA
WP_011221711.1\|1844930_1846154_+\|transposase	IS4-like element ISPpr1 family transposase	A0A0F7LAS3	uncultured_marine_virus	3.1e-102	50.9
WP_011221710.1\|1846267_1846774_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011221711.1\|1846839_1848063_+\|transposase	IS4-like element ISPpr1 family transposase	A0A0F7LAS3	uncultured_marine_virus	3.1e-102	50.9
WP_011221713.1\|1849987_1850524_-	hypothetical protein	NA	NA	NA	NA
WP_011221714.1\|1850535_1851036_-	hypothetical protein	NA	NA	NA	NA
WP_157134430.1\|1852578_1852851_-	hypothetical protein	NA	NA	NA	NA
WP_011220284.1\|1853073_1854360_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA
WP_011221717.1\|1855125_1855512_-	hypothetical protein	NA	NA	NA	NA
WP_081470432.1\|1856727_1857951_+\|transposase	IS4-like element ISPpr1 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.0e-102	50.7
WP_041395406.1\|1859755_1861366_+\|transposase	transposase	NA	NA	NA	NA
WP_011221723.1\|1863330_1863750_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_011221724.1\|1863914_1865357_+	cytochrome P450	A0A0B5JAC4	Pandoravirus	4.4e-07	29.7
WP_011221726.1\|1866310_1867354_-	GMP reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	3.2e-100	54.1
WP_011221727.1\|1867720_1868050_+	hypothetical protein	NA	NA	NA	NA
WP_157134431.1\|1868366_1869374_-	hypothetical protein	NA	NA	NA	NA
WP_086000053.1\|1869420_1870856_-\|transposase	IS66-like element ISPpr14 family transposase	NA	NA	NA	NA
WP_157134432.1\|1870956_1871952_-	hypothetical protein	NA	NA	NA	NA
WP_011221730.1\|1872236_1873403_-	oligogalacturonate lyase	NA	NA	NA	NA
WP_041395410.1\|1873454_1875224_-	Na+:solute symporter	NA	NA	NA	NA
WP_011217584.1\|1875393_1876344_-\|transposase	IS1595-like element ISPpr6 family transposase	NA	NA	NA	NA
WP_041395413.1\|1876685_1878917_-	exopolygalacturonate lyase	NA	NA	NA	NA
WP_041395415.1\|1878931_1879630_-	DUF2490 domain-containing protein	NA	NA	NA	NA
WP_041395417.1\|1879919_1880684_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_011221735.1\|1880819_1882127_-	TRAP transporter large permease	NA	NA	NA	NA
WP_041395965.1\|1882139_1882634_-	TRAP transporter small permease	NA	NA	NA	NA
WP_041395420.1\|1882737_1883727_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_011221738.1\|1883764_1884604_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_011221739.1\|1884871_1885495_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_011221740.1\|1885506_1886436_-	sugar kinase	NA	NA	NA	NA
WP_041395422.1\|1886624_1887260_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_011221742.1\|1887302_1887623_-	cupin domain-containing protein	NA	NA	NA	NA
WP_041395424.1\|1887641_1888157_-	YgjV family protein	NA	NA	NA	NA
WP_011221744.1\|1888191_1888953_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-19	29.8
WP_011221745.1\|1889211_1889997_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_011221746.1\|1890074_1891943_+	CBS domain-containing protein	NA	NA	NA	NA
WP_011221747.1\|1891945_1892656_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_157134433.1\|1892741_1894520_-\|holin	choline/carnitine O-acyltransferase	NA	NA	NA	NA
WP_011221749.1\|1894726_1895929_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.0e-25	33.7
WP_011221750.1\|1895931_1896780_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011221751.1\|1896924_1897875_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011221752.1\|1898021_1899728_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.1e-57	31.2
WP_041395426.1\|1901331_1901925_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_011221755.1\|1902620_1904669_+	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	1.1e-06	30.4
WP_011221756.1\|1904722_1905904_-	quorum-sensing autoinducer synthase	NA	NA	NA	NA
WP_041395429.1\|1906307_1908137_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.3e-15	81.0
WP_172635995.1\|1908253_1908682_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011221758.1\|1909132_1909504_-	hypothetical protein	NA	NA	NA	NA
WP_011221759.1\|1909518_1910181_-	hypothetical protein	NA	NA	NA	NA
WP_065814495.1\|1910344_1916866_-	tandem-95 repeat protein	NA	NA	NA	NA
WP_157134434.1\|1917196_1917400_+	hypothetical protein	NA	NA	NA	NA
WP_011220917.1\|1917352_1918963_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1932285 : 1964598

Streptococcus_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049789038.1\|1932285_1932981_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.8e-36	40.8
WP_041395435.1\|1934522_1934720_+	hypothetical protein	NA	NA	NA	NA
WP_011221774.1\|1934816_1936400_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_041395437.1\|1936389_1936584_-	hypothetical protein	NA	NA	NA	NA
WP_011221775.1\|1936947_1937388_+	thioredoxin TrxC	A0A191VYQ9	Roseobacter_phage	1.5e-06	27.8
WP_011221776.1\|1937661_1938897_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_041395439.1\|1939428_1940289_+	hypothetical protein	NA	NA	NA	NA
WP_011221778.1\|1940303_1940750_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011221779.1\|1940837_1941539_-	cupin domain-containing protein	NA	NA	NA	NA
WP_041395442.1\|1941790_1942702_+	transcriptional regulator GcvA	NA	NA	NA	NA
WP_065814496.1\|1942802_1944011_-\|transposase	IS4-like element ISPpr2 family transposase	NA	NA	NA	NA
WP_157134478.1\|1944255_1944681_+	DUF3429 family protein	NA	NA	NA	NA
WP_011218617.1\|1945144_1945354_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.2e-17	65.7
WP_011221784.1\|1945695_1947081_-\|transposase	IS4-like element ISPpr3 family transposase	Q9JMP3	Wolbachia_phage	4.8e-51	29.4
WP_172635948.1\|1947256_1948291_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	9.5e-12	66.0
WP_041393917.1\|1948662_1949091_-\|transposase	IS200/IS605-like element ISPpr13 family transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	1.6e-18	35.0
WP_011221785.1\|1949258_1950188_-	carbamate kinase	NA	NA	NA	NA
WP_041395977.1\|1952429_1953284_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011221789.1\|1953384_1954668_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-27	37.9
WP_011221790.1\|1954669_1955560_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_011221791.1\|1955620_1956619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011221792.1\|1957012_1957822_+	sugar-phosphatase	NA	NA	NA	NA
WP_011221793.1\|1957953_1959126_+	HlyD family secretion protein	NA	NA	NA	NA
WP_011221794.1\|1959115_1960183_+	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_041395445.1\|1960274_1961165_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041395447.1\|1961223_1961433_-	hypothetical protein	NA	NA	NA	NA
WP_041395448.1\|1961432_1962671_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_011220284.1\|1963311_1964598_-\|transposase	IS4-like element ISPpr4 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_005871

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_006371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection