CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_007617	Nitrosospira multiformis ATCC 25196 plasmid 3, complete sequence	0 crisprs	NA	0	0
NC_007615	Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence	1 crisprs	NA	2	0
NC_007616	Nitrosospira multiformis ATCC 25196 plasmid 2, complete sequence	0 crisprs	NA	0	1
NC_007614	Nitrosospira multiformis ATCC 25196, complete sequence	2 crisprs	RT,DinG,DEDDh,csa3	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007615_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007615_1

121-270

Orphan

Consensus_repeat	Method
CAAAGTCCGAGGTTTGGCTCCCA	PILER-CR

2 spacers

The CRISPR arrays of NC_007615_1

>merge|NC_007615|1|121-270|PILER-CR
CAAAGTCCGAGGTTTGGCTCCCACATGTCCGAGGTTTGGCTCCCAATTCACTTTTTAATGTGGATAAAACAGGTTAAAAGTCCGAGGTTTGGCTCCCAATTCAACTCTTCACAGGTAGTTTTTACCTCAAAGTCCGAGGTTTGGCTCCCA

>NC_007615|1|1|121-270|PILER-CR
CAAAGTCCGAGGTTTGGCTCCCA	CATGTCCGAGGTTTGGCTCCCAATTCACTTTTTAATGTGGATAAAACAGGTT
AAAAGTCCGAGGTTTGGCTCCCA	ATTCAACTCTTCACAGGTAGTTTTTACCT
CAAAGTCCGAGGTTTGGCTCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007615.1\|WP_011382055.1\|3065_4604_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|378923
NC_007615.1\|WP_011382060.1\|6553_6907_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NC_007615.1\|WP_146063223.1\|2820_3054_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377091
NC_007615.1\|WP_011382054.1\|2370_2787_+\|hypothetical-protein	unknown	unknown	unknown
NC_007615.1\|WP_011382056.1\|4600_5188_+\|hypothetical-protein	unknown	unknown	unknown
NC_007615.1\|WP_011382058.1\|5628_5874_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_007615.1\|WP_167535604.1\|1228_2368_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_007615.1\|WP_011382059.1\|6170_6557_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227024
NC_007615.1\|WP_011382057.1\|5287_5632_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_007615.1\|WP_011382052.1\|849_1188_+\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	gnl\|CDD\|368576

Protein	Function_ID	Function_description	E-value
NC_007615.1\|WP_011382055.1\|3065_4604_+\|TraM-recognition-domain-containing-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	2.34774e-05
NC_007615.1\|WP_011382060.1\|6553_6907_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	2.11988e-24
NC_007615.1\|WP_146063223.1\|2820_3054_+\|hypothetical-protein	gnl\|CDD\|377091	pfam03648, Glyco_hydro_67N, Glycosyl hydrolase family 67 N-terminus. Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the N-terminal region of alpha-glucuronidase. The N-terminal domain forms a two-layer sandwich, each layer being formed by a beta sheet of five strands. A further two helices form part of the interface with the central, catalytic, module (pfam07488).	0.00734133
NC_007615.1\|WP_011382058.1\|5628_5874_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.06336e-10
NC_007615.1\|WP_167535604.1\|1228_2368_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	7.46723e-16
NC_007615.1\|WP_011382059.1\|6170_6557_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227024	COG4679, COG4679, Phage-related protein [Function unknown].	8.82604e-30
NC_007615.1\|WP_011382057.1\|5287_5632_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	7.08496e-23
NC_007615.1\|WP_011382052.1\|849_1188_+\|plasmid-mobilization-relaxosome-protein-MobC	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	0.00196357

>NC_007615.1|WP_011382052.1|849_1188_+|plasmid-mobilization-relaxosome-protein-MobC
MPRPKKEQAQKRPHRISIRLSDDELLHIRERANQAGGSTSKYLRKAALSGKVVIQQKTGNGPIVRQLLGIGNNLNQLTRMAHIHGGHDREKLREVLNDVQTVVMRFIDDSQD
>NC_007615.1|WP_167535604.1|1228_2368_+|relaxase/mobilization-nuclease-domain-containing-protein
MHDKDATSAERVAWWETGNLLTNDPKEAAKVMAYTDMNSEQLKRDNQGSLAGRQATAGAVYHYSLSWAHGENPNPEQQKTEAKATLEQLGLDKHQYLMVAHNDTQHAHLHIVVNLTDQETGKRNIPSYDKRELQSWALEYERTHGIYCDQRVENVHKREQGNPTKYRDEKQSYAGRVTEAYKQADSGKAFAAALETHGLTLAQGRRGGLVIVDMQGDIQKLARQIDGASTKEIKARLSDLDIDSLPLANELAKKRQETTLPEQAEPQAQATPPASAVRQPANIYEYKEAIQGNNNPPPASLNEFSSMVTKTMQENNGELHMNDGLTWWQRPVVSQAMRDWAIETAKEILDMAKDKWQEFVRRFDTGPENHERDGHERER
>NC_007615.1|WP_011382054.1|2370_2787_+|hypothetical-protein
MIDSFDEFRKQGMAQASQEKAAPDLVINRPARQPYEAFAAKDKVLRLDIRCPSSDMGHSLPYNYITNITYKLSDYSEIFLTVSGITVTITGKNLRPVVEALKLHTCEFIQEYSSDKFIEHGDRNKPFVSSITIAVIGR
>NC_007615.1|WP_146063223.1|2820_3054_+|hypothetical-protein
MKKDSLMEEFVAGVTGAINDIREKVVEEGWFGRTVTTSSPEAGSSNAIDTWESYVQQAQRNAPAEKEEIAPGNDIDR
>NC_007615.1|WP_011382055.1|3065_4604_+|TraM-recognition-domain-containing-protein
MSFASSLDTPLLNLSAKDSFTLRDACNGVHIFGGIGSGKTSGSGKTLAGAYLRAGMGGLVLCAKPEEVNLWLDYANQHGRRRSVILFDENGGFNFIDYELARQGTKGISNVTECLLRVLEAADQATGRHGGTSDQFWVDAIRQILNYTIPAIYSAYARVTVSDIIYFVSSASTKPEQLADDNWVAESYYARTLRRVIENPKVPIEENARQSLLHYWSTQYPAIPEKTRGNMVISLSTRLDRFRHGSLQKSFCGNTDIVPEMTFHGAIIIMNMPALTWNEDGIIGQQLFKFMWQRAVESRNGLDKTQHERPVFLWADEAQYFTNLKDDQFLSTCRGSRACVVFLTQTLPSYYAVFGRDKSDAADGLVGKFNTQIFHQNACNRTNHFASEMIGRALQLRNTTGRSTGTSQSEGLSQGSSETSGHTRGNSGYGKSGGSGENIGSNIGMGRTETFSTGASEQMDYLVQPMFFASNLKSGGKKHGNQVSALWFKVGGHFQNAIGAKGGNTLHVTFRQ
>NC_007615.1|WP_011382056.1|4600_5188_+|hypothetical-protein
MKPHPFIFLIGSNAICALLLIALGAVIFDWSQGIPQNPLVIASLFALAIYSFRANQRVTAYKKFQGEWDAIGGKQLKPRRKSQIVAAVFLWLISLYILLKTPRESDRLLYDLVLGVFFIPFTLWFCYLFLHNFPGLAVNLFRRGKSRSHTPKDYIVSHCQSVPRSAAVAAQINRNLPGYCKSLLEQKQNPARENK
>NC_007615.1|WP_011382057.1|5287_5632_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKRYILSPAAKTDITNIRKYTIQKWGKSQADKYTLELRERMRWLADNPMLGRARDEVKEGYRSFKEGSHIIFYRVVESTIEIIGIPHQNMDIEQNLEEEILLFTNIADGGFEGD
>NC_007615.1|WP_011382058.1|5628_5874_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKAIAAKEAKNNFGEMLDTVQREPLTIEKHGRAVAVVMSAREYQQMKLERLQAKLAVGEGQLNRGEGVDGEAVFAELLSEA
>NC_007615.1|WP_011382059.1|6170_6557_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MQDVRKTIKPVEWVGSSFRDFRAFPDAVKDEMGYALHQAQIGGKSLSAKPLQGFGGAGVLEIVTNEMGDTFRAVYTVKFATAIYVLHAFQKKSKSGIKTPAEDMKLIEQRFKAAEADYRLQLEKGKIS
>NC_007615.1|WP_011382060.1|6553_6907_+|XRE-family-transcriptional-regulator
MTQDIENTIVRGSENLFADLGYADAETHLLKAGLVNRIQEVINEQKMTQTVAAKRMGLSQPDVSRLLKGHFRDISVERLMRLLTRLGCEIDIVIREQGKKTSRRNTIHLGMDVNVTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007615_1	1.1\|144\|52\|NC_007615\|PILER-CR	144-195	52	NC_007615	Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence	144-195	0	1.0
NC_007615_1	1.2\|219\|29\|NC_007615\|PILER-CR	219-247	29	NC_007615	Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence	219-247	0	1.0

1. spacer 1.1|144|52|NC_007615|PILER-CR matches to NC_007615 (Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

catgtccgaggtttggctcccaattcactttttaatgtggataaaacaggtt	CRISPR spacer
catgtccgaggtttggctcccaattcactttttaatgtggataaaacaggtt	Protospacer
****************************************************

2. spacer 1.2|219|29|NC_007615|PILER-CR matches to NC_007615 (Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

attcaactcttcacaggtagtttttacct	CRISPR spacer
attcaactcttcacaggtagtttttacct	Protospacer
*****************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10275

Escherichia_phage(40.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011382069.1\|672_1593_+	Abi family protein	NA	NA	NA	NA
WP_011382070.1\|1652_2528_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_011382071.1\|2520_2841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_080557727.1\|3205_3430_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_104009798.1\|3475_4557_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-40	36.7
WP_011382072.1\|5107_6079_-	type II restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	1.2e-152	82.2
WP_104009786.1\|6075_7467_-	class I SAM-dependent methyltransferase	A0A2L1IV91	Escherichia_phage	1.3e-186	68.5
WP_011382074.1\|7747_8062_-	hypothetical protein	NA	NA	NA	NA
WP_011382075.1\|8048_8699_-	AAA family ATPase	B0ZSI1	Halomonas_phage	1.2e-17	33.0
WP_041353370.1\|9174_10275_+	replication initiator protein A	A0A0K1LLD0	Rhodobacter_phage	2.5e-66	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_007614

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CRISPR-Cas detection and classification

Crispr_ID: NC_007614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007614_1

730127-730236

Orphan

Consensus_repeat	Method
GGTGGCGAACACCACGAGTTTGCTCTTAATACTCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007614_1

>merge|NC_007614|1|730127-730236|CRISPRCasFinder
GGTGGCGAACACCACGAGTTTGCTCTTAATACTCTTTAATCCGAGCCCCAGCGACGGAATCAGGCTAGCCACGGTGGCGAACACCACGAGTTTGCTCTTAATGCTCTTTA

>NC_007614|1|1|730127-730236|CRISPRCasFinder
GGTGGCGAACACCACGAGTTTGCTCTTAATACTCTTTA	ATCCGAGCCCCAGCGACGGAATCAGGCTAGCCAC
GGTGGCGAACACCACGAGTTTGCTCTTAATGCTCTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007614.1\|WP_011379990.1\|720719_721988_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NC_007614.1\|WP_011379988.1\|717474_719487_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NC_007614.1\|WP_011380004.1\|745039_747163_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NC_007614.1\|WP_049783140.1\|719488_720481_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|133464
NC_007614.1\|WP_104009619.1\|743858_745043_+\|cell-division-protein-ZipA-C-terminal-FtsZ-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|367907
NC_007614.1\|WP_011379993.1\|726338_727169_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|182988
NC_007614.1\|WP_011380002.1\|740137_743710_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NC_007614.1\|WP_049783141.1\|736042_737176_-\|DUF1207-domain-containing-protein	unknown	unknown	gnl\|CDD\|310969
NC_007614.1\|WP_104009612.1\|727714_728533_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NC_007614.1\|WP_011380006.1\|748109_748655_+\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NC_007614.1\|WP_011379997.1\|734128_735970_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NC_007614.1\|WP_011380000.1\|738137_739229_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|147458
NC_007614.1\|WP_011379992.1\|723667_726292_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_007614.1\|WP_041352362.1\|722314_723550_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271234
NC_007614.1\|WP_167535551.1\|711415_711577_-\|hypothetical-protein	unknown	unknown	unknown
NC_007614.1\|WP_011380001.1\|739574_739994_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|237320
NC_007614.1\|WP_011379987.1\|715309_717409_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_007614.1\|WP_041352361.1\|711732_713586_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131258
NC_007614.1\|WP_011380005.1\|747162_748047_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NC_007614.1\|WP_011379996.1\|730433_733904_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118

Protein	Function_ID	Function_description	E-value
NC_007614.1\|WP_011379990.1\|720719_721988_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.43307e-114
NC_007614.1\|WP_011379988.1\|717474_719487_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NC_007614.1\|WP_011380004.1\|745039_747163_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NC_007614.1\|WP_049783140.1\|719488_720481_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|133464	cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.	3.65762e-84
NC_007614.1\|WP_104009619.1\|743858_745043_+\|cell-division-protein-ZipA-C-terminal-FtsZ-binding-domain-containing-protein	gnl\|CDD\|367907	pfam04354, ZipA_C, ZipA, C-terminal FtsZ-binding domain. This family represents the ZipA C-terminal domain. ZipA is involved in septum formation in bacterial cell division. Its C-terminal domain binds FtsZ, a major component of the bacterial septal ring. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ.	2.6147e-48
NC_007614.1\|WP_011379993.1\|726338_727169_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	2.01601e-84
NC_007614.1\|WP_011380002.1\|740137_743710_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_007614.1\|WP_049783141.1\|736042_737176_-\|DUF1207-domain-containing-protein	gnl\|CDD\|310969	pfam06727, DUF1207, Protein of unknown function (DUF1207). This family consists of a number of hypothetical bacterial proteins of around 410 residues in length which seem to be specific to Chlamydia species. The function of this family is unknown.	0
NC_007614.1\|WP_104009612.1\|727714_728533_+\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	2.80276e-07
NC_007614.1\|WP_011380006.1\|748109_748655_+\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	1.06056e-102
NC_007614.1\|WP_011379997.1\|734128_735970_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NC_007614.1\|WP_011379992.1\|723667_726292_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.41541e-53
NC_007614.1\|WP_041352362.1\|722314_723550_+\|hypothetical-protein	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	0.002362
NC_007614.1\|WP_011380000.1\|738137_739229_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|147458	pfam05268, GP38, Phage tail fibre adhesin Gp38. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, gp57, catalyzes the organisation of gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition.	0.000374518
NC_007614.1\|WP_011380001.1\|739574_739994_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|237320	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional.	1.06633e-73
NC_007614.1\|WP_011379987.1\|715309_717409_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	3.06141e-126
NC_007614.1\|WP_041352361.1\|711732_713586_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	9.90426e-171
NC_007614.1\|WP_011380005.1\|747162_748047_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.88213e-167
NC_007614.1\|WP_011379996.1\|730433_733904_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

>NC_007614.1|WP_104009612.1|727714_728533_+|SH3-domain-containing-protein
MWPEKISAQVVVVLIGVNIAACSHIQKVHSPAPEPAGNFPLAREVAQFEFGCSNLRAEREAQQQEIQRLQKLLAEKEAYIRSQEVRQQDQQKALQETSNRAAHAQVRLRRLATRPAAASTIAEVEMVMENLKSSPFTGSELILQNQAQRLLDAAVSAYEGDNYAAAMDYASQAREFINMMKNNRARKVSDAHQVTVLFQMPIPLRASADSKLREKPGLKAPILGVLKKESAMTAEAYRGEWLQILTADGRSGWIFSTLVEAQVAKGIDMGVK
>NC_007614.1|WP_011379993.1|726338_727169_-|phosphoserine-phosphatase-SerB
MNLIIQGLEIQNSDLRELAKLVDANHIERITGQAFRLENAARREEVAAYCAEADLDFAFVDPSARLSDFGLVAMDMDSTLLAIESIDEIADMQGVKAQVAEITQRAMRGEIVFAESLRLRTALLEGLDEDALQRVYDERVRLSPGAEKMLQRMKSAGLKTMVISGGFTFFTDRVKARLDLDYAAANRFEVSNGKLTGKVLGDIIGATGKGEVLKKVREELGLKREQVIAIGDGANDLKMMEEAGVSIAYHAKPVVQAKATYALNHVGLDGVVNLFR
>NC_007614.1|WP_011379992.1|723667_726292_+|TonB-dependent-receptor
MKRIPFALVGLLCVPSAWAMQEIEQPKQFSQKRIPVRLPATSLSMNPAQSDTPVSSMGSETRSGMLVAEATAVTTSGQPQTGETGTGKPDKDREDKENKGGKEKKDDIPAVQKETVFKEMVVTGETERDTHFTSPSTRVTRAQIERQNAQTTEEVLKYMPSLQIRQRYVGDPNGVLGIRGADMFSTARNMVYADGLPLHNFLQATFNGAPRWSLVGPNEIDSVDVVYGPFSAEYSGNSIGGVVNIKTRMPHKQEFYVESSLFIQPFKIYGPDKGTFIGDRQYVSYGNRIQDKFTVFLAYNRLEAQSHPQSYFIDNTGLFDVPGGTPVSGGIRTPDTRGTPSVIYGDTGPEKVNTHLFKGKFGYDITSNLQALFTVAYEDRTRHQNRPRNYLRDGSGNLFWGGPAPTCAPGAPCANPENALGNASLDGTRFDVMQRGFGGSQDKRETLNLGLSLRGALTPDWNIDTTMSYFDVLKDIRASAFFNQGDPANSGTGQLQDFRRFSWLNYDLKLSAPVLLGNDKVSFLAGYHFDQYNLSFRQYSLTDYSTLTRGALQANRNNDGQTSMHAMFAQSTFRFLPQWDVTAGVRQEWWAATKGVVGNLEVPDRSLAATSPKVSVGYEPGQWKYRYSFGRAHRFPVIAELYQSLSTPTSILTANAMLKPENGVHHNFMVEYGLPKGYIRVNAFRDDIKDAIQQVNTVSGVVITSGFQNIGQVSTTGVELIYDQRRILGSKLDFMFNGTWMNAKVEKGPIVDFTTSTGVPADYNLTGKQIIRLPHWRANFFGTYHMTEAWDISLSGRYTSDSFNDPDNGDHVNNVFGSQSDFFFMDFKTSYRYKFQNGLKSRFSFGISNLNNDKAWVFHPYPQRTYLVEAAFSY
>NC_007614.1|WP_041352362.1|722314_723550_+|hypothetical-protein
MRKSMFALPGFAGLFLALVSVAVVAAEPHSSGETHHHPAMHSAKSVKTALAVGVTLDQDGRLWLARVVDQHLLVSWSEDSGSSFSEPAVVTPEPENISIDGENRPKIEVARDGSVLVTWTQVLPQKYSGNVRFSRSIDSGRTFSKPITLNDDGRVTSHRFDSLAIDGDGRVIVAWLDARDRDAAREKGEEYRGVSLYTTQSFNNGESFGRNRRIQEHTCECCRTALIWSREGPIVLLRNIFGANTRDFALINLDKGGIRRVNRDEWQVDACPHNGGSLATDRRGQLHLVWFTNGPADQGLFYKRIDGNWESKPKPIGNADAQANHASVVADGETVILTWREFDGNAYSAKMMYSNDSGESWSEPMRLMESDGATDYPIPLIDNRKVLIVWNTAKEGLRILPIERVTARYSG
>NC_007614.1|WP_011379990.1|720719_721988_+|dicarboxylate/amino-acid:cation-symporter
MKKISLNTQILWGVFAGLFLGLGLSLLDEESVIFRAGLYGAELLGTLFIDLLKMVLIPLVFTSIAVGVANLRAHQQMHKVWKATLGFFLFSMALAILLGLTAANIVRPGEGLQLAMFQDDMQNFQAGQMPLTEFVAQLLHSLFQNPMTALAQGNVLAVVVFALLLGIAMVVGGERYANILILLQELLELMLMLVGWIMRLAPLGIMGLLVKLAATQDVTLLATLVEFIAVVIGATLLHGMVVLPLILYLVTGMTPFKFWRGAREALLTAFATSSSSATLPVTLRCVEQHLHVKRDIAGFVIPLGATLNMDGTALYEAVAALFVANLIGIELNLAQQMIVFLTAMLAAMGAPGIPSAGMVTMVVVLQSVGLPAEAIAILLPVDRLLDTFRTAVNVEGDMVGSLVVQKWVRKESIRGSRSDSEG
>NC_007614.1|WP_049783140.1|719488_720481_-|glycosyltransferase-family-4-protein
MNSGSPILYLIPPFIAFAVSLGTISCLIKGNILKILDQPNSRSLHTRPVPRTGGLGLMSGIFVSWTFLPVKPPVSIWVAIVLLVTISFADDVRSLPVWPRLVIYTGLGIWFSAVTLAATYGWLVAVAAALCITWMLNLYNFMDGSDGLAGGMTLIGFSCYGATAWISGNEAFAIANFCIAAAAGAFLLFNFHPARIFMGDAGSIPLGFLAAALGMMGWINGCWPPWFPLLVFSPFIVDASVTLIKRGLRGEKIWRAHREHYYQRLVRSGLGHRNTALIGYVLMSATAISALWATQQHTNVQFGMVTAWIGIYLVMICLCDRRLRHAPDSP
>NC_007614.1|WP_011379988.1|717474_719487_-|polysaccharide-biosynthesis-protein
MPAPKLNIRTVIAFGHDVVAAAIAWSLAYLFRFNFEIPFVYLASLEEILPWVVPIHAAAFLFFGLYRGLWHYASLPDLRRILFAVSASAAAVPLVLYMLQILVGVPRTVLILAPILLLFIMGSSRLAYRFWKEHRLYGRSKTGGNLVLVIGASDAAVGLVKELARNVEWRVAGFLDDDPAKRGLMLHGFKVLGRINDLPEVARKLGVAHAIIALTSSASDRRKSYRTHSDRRRPDRLLRDRRRALQLCAAAGVKALIVPSYNDLVSGNIKVSQIRTVEPEDLLGRDPVVLDNDGLHDLLTGKTVLVTGAGGSIGSELCRQIVKFAPAQLVLFELNEFALYSIEQEFQADFPEIPMIFAIGDVKDEARLSQVFLQYRPAIVFHAAAYKHVPLMEQENAWQAVLNNVRGTYVLAQTAIRYGVEKFVLISTDKAVNPTNVMGASKRLAEMVCQALQQSIASPDSPTENASGKIVLGSRLERRQEPRFVMVRFGNVLGSAGSVIPKFREQIEKGGPITVTHSEITRYFMSIPEAAQLVLQAGLMGGKRRGGEIFVLDMGEPIKIADLARDLIRLSGLSEDEIKIVYNGLRPGEKLYEELLADDENTLPTPHPKLRIAQARQVDRKWLTALLAWLEEHPALSDEEVKRELPRWVPEYVSAESVIPVSQVRESRIA
>NC_007614.1|WP_011379987.1|715309_717409_+|EAL-domain-containing-protein
MKKEFELNYSLSVLKAAIEATVDGLLVTDRRGKVLCYNQLYVNMWPIPGELLAHARHQAILGYCAGQLRDPEQFLRSIEEIYATLAPESFNVFEFRNGRVFERCAKVKTLEGSDIVLVWSFRDITERRQGESYKAQLAAIVESSNDAIIVKDLNGIITGWNAAAEELFGYRSGEIIGSSILTLIPPDRLEEEDRIMNLVKSGKRTDHFETVRWGKGKKSIDVSVTISPVKDSAGNIIGASKIARDITQRKESQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYAFRLALLFVDLDRFKLINDSLGHAIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTATEAARVAEKLIAVLSQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMYSAKGQGRNRYQFYSEDLTSGADERLRLEYDLRSALARDEIFPVYQPQLELATGRVVGVEALMRWKHPERGLVSPASFIPVAEDSGLILSLGEHILRESCLQARQWHEQQGFEGTIAVNVSAVQFRQNDFTDVVLRALADSGLSPECLELELTESVVMHGVESATQKMCFLESRGIKLAIDDFGTGYSSLSYLRQFAIDRLKIDRSFVRDLPQDTDAKAIIRATVAMGRSLGLRVMAEGVETEGQAEYLRSVQCDESQGYLYARPMRPDDFEAWLKGRKPDFRGSRYQMAQS
>NC_007614.1|WP_041352361.1|711732_713586_+|ATP-binding-cassette-domain-containing-protein
MQNTQNTGARQLCLRLTRYVAPYWDAIILATGCMIATAATVPMLAALMQPTMDEVIANRNPELLQLVLLGIISLFAVRAVAGHLATYVLHWAGSKLAVDLLCEIFDKLLVLPHSYYESCPGSNHISVDHVSRITSDAPEVARAFVNVMTVMIRDTSTVIGLLGWMFYLNWPLALLILLMSSVILLVTQLLGERLREMGRESERAIEGLTRILKGAALNFMVVKLYGGEQYENQRMREQAEEARRFFMKRAAVASLYVPLIQTIGAAAIVLTLYFAANEAVASELTTGSFASLITAILLLIVPGRRIAEVGGTFQRGLLAAGSLFSLLDGEVESETGTVVIQRVRGELQFEEVGYGERTERNPGTSLKVRSLGNSDPAAVLRRGLNSGLHDVTLIIQPGETVAVVGCAETMDVLTYMVPRFLTPTSGRILLDGHDLRSITLASLRANIALVSPHTTLFNDTVAANIAYGAMGRATEARITWAARAAHASEFIRKLPDGLQTMVGDGGVELPVSQRVRIAVARALLKNAPLLILNEKLGMLEPDSVPLVQAAFDTVMQGRTTFVIADRLSTLEKADQVVMVDKERIVDRGSHRELMARDGAYTRLIRRVFGSKTAVAAR
>NC_007614.1|WP_167535551.1|711415_711577_-|hypothetical-protein
MIRTRAMRVQADNLHGNDARRLGKGSQMATGAWARDLAEPEGGTLKCSGAQSN
>NC_007614.1|WP_011379996.1|730433_733904_-|transcription-repair-coupling-factor
MAFKLTIPSSGSTIRYGHFDGSSDSLALAQLALEAKKAKPVTIITASALAAQRLLEEIPFFAPELRTRLLPDWETLPYDTFSPHQDLVSERLATLYQLMNGACDILIVPVTTALYRMPPPEYLAAHTFFLARGETLDLNALRSQMTLAGYSHVTQVLSPGEYSVRGGLIDLFPMGSPLPYRIDLLDNEIETIRTFDVDTQRSVYPVTEIRLLPAREFPLDEEGRTRFRGRFREKFEGDPSRSLIYKDISKGGSPAGIEYYLPLFFEHTATLFDYLPQTALLCLHHELYQTVESFWHDTQARYQLLRGDSDRPLLKPADLFLTTEAFFGALKPYPRIEIPPEERATKTGGAEVQGLSIPLPPLQIDRRAVNPAEKLSAFIAEFESSGGGRTLLLAESLGRRELIADHLKQYRLNPDICDNYAQFRASTSPFVLGVGPLHNGFIYPEKGIAFVTESELYARHLHGRGERDSRKTSAVADAVLRDLSEIKAGDPVVHEQHGIGRYLGLVSMDLGEGETEFLSLEYASGDKLYVPVSQLHLIGRYSGASPESAPLHKLGSGQWDKAKRKAMQQVRDTAAELLNIYAQRAARVGHAFRLKEQDYEAFVEGFGFEETPDQATAIAAVIDDLTSARPMDRLICGDVGFGKTEVALRAAFVAVADGRQVAVLVPTTLLAEQHFQNFSDRFGLIAEEWPVKIAELSRFRSGKEQAQALAGLADGQIDIVIGTHKLIQKGVRFKNLGLVIIDEEHRFGVRHKEQLKSLRSEVDVLTLTATPIPRTLALSLEGLRDFSVIATAPQRRLAIKTFVNRFSEGIIREACLRELKRGGQIYFLHNEVSTIQTMHDKLARLLPEARIGIAHGQMRERELEHVMKDFYQQRFNLLLCTTIIETGIDVPTANTIIIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPEEEALGTQARKRLEAVQSMEELGAGFYLAMHDLEIRGAGEVLGESQSGEMQEIGFTLYANMLEAAVRSLKEGKEPDMQHPLGVATEINLHVPALLPEDYCSDIHERLILYKRMANCTSDEQLDEMQIELTDRFGLLPDPVKALLDCHRLRIAAAPLGIIRVEASSESIQVQFTPNPPVDAARIVALLQRSRDYQLSGPDRLKIKTCIPEAGERVRRIMDLFTELGT
>NC_007614.1|WP_011379997.1|734128_735970_-|single-stranded-DNA-specific-exonuclease-RecJ
MPNIIVRDYPHQTFDTLIRHGFHPVLARVYSARGIEEPGQLEIDWSRLIPFARLKNATAMAQFLATAIALRKRLLIVADYDSDGATACAVGIRALRKFGAQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDILITVDNGIASVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVGVMFYVMLALRAELRAKGMFASPQQEPNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKRIRKGSGCAGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPRAAQLALQLDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRSHDSPQEGTSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPGFHLRDALDLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRVIETDGDLDESEITLELAEQLVRQVWGQGFPQPAFRSRFHVEDQRVVGQKHLKLKLRKARPAAGNNPPEKPVLLYDAILFLQDGPLPGVIDAVYRLQVNDFKSDVSLQFILEHWSEATMM
>NC_007614.1|WP_049783141.1|736042_737176_-|DUF1207-domain-containing-protein
MLFFTSTVHAAVTEDAYIAGYAAGVLKHGFGMEIPTLVVKDGIITVPEDKLKSENQAQVVQALSKIPGVTGVTIAEKSVSRIAEREAFKPIQHPSAISREPGAATTETAGVPAAGPTVLATGMLPEGHLFKPLLADPRWAHFSAAYRNYVGNNIDGNNNAAVSFGETIPFYRANFGQSTVQWEAGLQAAVFSDFNLGAPSSDLINSDFIASAYGSVRAGHFSAFGRIYHQSSHLGDELLLRRLTSLQRINLSYEGADLRLSYELPYGLRVYGGGGGIFHKEPSNIKPWSIQYGVEFRSPWRIAFLPLRPIVAVDLKNHQQNDWNADVSARAGVQLDHFRAFGRNLQFLVEYFHGNSPTGQFFRQRVDYLGIGAHYHF
>NC_007614.1|WP_011380000.1|738137_739229_+|PEP-CTERM-sorting-domain-containing-protein
MMSIRRIVWQLSMCAGITLSTNAYAIALFQSESVAPAALQSEYHVSWVRREADDPEGTGGHSTHPSWNGSPNFLLPLASGYFDILSPFENFASPSTALYLTLLRGDEAFGVNIAGFTNDEAGLVNMLALPDLFMQAQWQPAEGNSQTTPFTPHSNSGNMARARNTPHACAQLREVRRNRLELRDDDCIGLGGGSEGNGNANRNGSKAGGGSNAIIARNKNARDSNAGDGAYTGGGGGGGGGAGGGTPGTGEKGNGGMSPPDSNNSEPDNGSEGNAGGTEGAVSNHGNENGGTGEGGNGGTGGGDGSGGNGGTGNWNNPDEGEGPPPSEVTEVTPLPEPATLALLALGLAALCAVRRNQGKIAD
>NC_007614.1|WP_011380001.1|739574_739994_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MPSRPDKNLETFPNPTQERDYHIHMEIPEFTCLCPKTGQPDFATLILDYIPDKKCVELKSLKLYIWSFRDENAFHEAVTNRIVDDLATALQPRYLRLTAKFYVRGGIFTTVVAEHRHSGWTPLPSVDLFHFDSQPSTRG
>NC_007614.1|WP_011380002.1|740137_743710_+|chromosome-segregation-protein-SMC
MRLSHIKLAGFKSFVDPTEIPFPGDLVGVVGPNGCGKSNVIDAVRWVLGESRASALRGESMQDVIFNGSTTRKPVGRASVELAFDNSLGKAAGQWSSYAEICIKRVLRRDGESTYYINNIHVRRRDIADIFLGTGLGGRGYAIIEQGMISRIIEAKPEELRVFLEEAAGISKYRERRRETESRLADTRENLLRVNDICQELEKQLVRLGQQAETARRFEDLQSRLDKAQNLLWFARKQEAASQRALAEKEIQSLQTTLEAEAAALRRAEKQLEEKRADHFAASDLLHDAQGELYAANAEVAYTEQQIQHVRENYQRIAQQIAATRHQLEHYATQADTSVDSLNRWHEEYKQARSDSEASKQKATVENEKLPLAEAAFRTRQEKLAEVQRDLLLAEQSEQLEKSHRDHAEKALQQLEMRRKRLLVEYAALPESKVEELSELTREAEATAHDLKQKQEEFAQTENLLLDAEEVKREFARNVQALEQQVVQAEARLSALQRLQGRLESSEGLNTWFARHRLDSLPRLWQGIQIEKGWEDALEAVLRERLNGTRVGQLEVALEWANPPPGKCALFEPAEMKLQKTTKAGKIAGAEGGGGKPPRDGEAGVALRSYLTCSDTSVKSVVDEWLSGIFAIDSLEAGLSRRNLLSPGEMLVTREGCVVTSHSLTFYSPDSQLHGVLARQREIGQIEVEMEALRAKLDIEQSALDTAGDTCYDLESSLSSLRHENEQLQQLHHNVQMQALKLTQTVERSEQRRKQIDSDLAEIEQHAEAEASRQCSAEARLAEHGVRIKFLQEQVRTEQLARDTAEESLTGQRRLAQNASREMQEAIFHEKTCEHKIAEAENAIEGIERSVGELKAHLEKLQVEQDSFDEGELVGVLEERLTLREQREQKLAEARNALEALATELRQIEQERMASEQKLHPLREAINHMRLKEQEARITENQFGEQLQGCEIPEEELINSLGKTRPAALQSEVNRLRGDITALGPVNTAALEELESCQTRKTYLDSQARDLEEASETLRNAIRRIDRETRERLLETVEKVNAHLGDMFPTIFGGGHAKLMLRGEEILDAGVQIVAQPPGKKNSSIHLLSGGEKALTALAFVFSLFQLNPAPFCMLDEVDAPLDDSNTERFCNLVRKMSRQTQFVFISHNKIAMEMAQQLIGVTMQEKGVSRVVAVEIEEAVRLGDTALAT
>NC_007614.1|WP_104009619.1|743858_745043_+|cell-division-protein-ZipA-C-terminal-FtsZ-binding-domain-containing-protein
MLLGASASVKGEERIEPRLSPGAEPHEPEAAPSRHSNASPEVAEPAQKVNVNPALHPPSRPKAGKAVERTWFKGPASFTVPARRSGDEDSRHEGGVVPERFSVPAAASGDEERPVEGDNVSDAVDYVVEIARETPFADLTLAEVLDRKFDFSKPVRWMGKQSADASWEEIVTDTRGREGRASYVSLKGFLQLADRAGPVSEVSLGEFRDMAENFAARVNATARCPDIYKSYRRALMLDEFCTQVDVMAGINIISRDNSVFTGAKIRVMAEACGFKLGNEGMFHYRDENNVVLFSLGNYEPSPFLPDNIRTLTTRGITLFLDVPRVANGERIFNQMVHLAETFSEALGGFMVDDNRVPLSDTGIRKIKQQLSSIQSVMISRNIPPGGQIALRLFA
>NC_007614.1|WP_011380004.1|745039_747163_+|NAD-dependent-DNA-ligase-LigA
MSERLSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELITPDSPTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLGIAQVEYAVEPKFDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVRGEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCEGGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYKVNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGGATVTNATLHNEDEIRRKDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNAKPFVMPEHCPVCGSRTIRLPGETLTRCTGGLFCPAQRKQAILHFASRRAMNIHGLGDKLVDHLVDNAIIRTPADLYKLGLAALAALDRMGEKSAGNIINEIEKSKDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLMDADVETLQQVSDVGPVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSKIAGRSFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGVALLDEAELIRLLQASQADNSSTHVDPERMV
>NC_007614.1|WP_011380005.1|747162_748047_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MPKIRKAVFPVAGMGTRFLPATKANPKEMMPVVDKPLIQYAVEEAIAAGITEMIFITGRHKRAIEDHFDKAYEIENELEARGKNETLEMLRSILPKNIHCIYIRQSEALGLGHAILCARPAVGNDPFAVLLADDLLVGDEPIMRQLGKVYEENGCSILAVQNVEPEDTLNYGIVKCGPGMNGLHPITGIVEKPAPENAPSRLGVVGRYILTPKIFEHLERVQPGAGGEIQLTDGIASLLREERALAYEFHGTRYDCGSKIGYLKATIALALQHPEVGREFAAYLDARCSGHTSV
>NC_007614.1|WP_011380006.1|748109_748655_+|hypoxanthine-guanine-phosphoribosyltransferase
MLPYQDAQKILREAEQIFPAEVVVETVRRMAADITATLAHRYPLVLSIMGGAVVFTGQLLPLLQFPLNFDYLHVSRYAEKMHGGRIDWKASPGENVQDRVVLVVDDILDQGITLAAIREWVMSQGAAAFYSAVFAEKDIPGPKPISADFVGLVVPNRYVFGFGMDIYGAWRNLPAIYALKE

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Crispr_ID: NC_007614_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007614_2

1576924-1577023

Orphan

Consensus_repeat	Method
ACTTGGTCGCGCGATTGACAGTCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007614_2

>merge|NC_007614|2|1576924-1577023|CRISPRCasFinder
ACTTGGTCGCGCGATTGACAGTCGTGCAACAGCAGCTAAGCGACCAGGTTCGGGATCTGATGACAGCGAAAGACGACTTGGTCGCGCGATTGACAGCCGT

>NC_007614|2|2|1576924-1577023|CRISPRCasFinder
ACTTGGTCGCGCGATTGACAGTCGT	GCAACAGCAGCTAAGCGACCAGGTTCGGGATCTGATGACAGCGAAAGACG
ACTTGGTCGCGCGATTGACAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007614.1\|WP_011380717.1\|1571727_1572471_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NC_007614.1\|WP_167535562.1\|1583311_1583512_+\|hypothetical-protein	unknown	unknown	unknown
NC_007614.1\|WP_041353007.1\|1574899_1575823_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271180
NC_007614.1\|WP_011380725.1\|1578234_1579341_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|235898
NC_007614.1\|WP_011380714.1\|1569471_1569873_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NC_007614.1\|WP_011380712.1\|1559120_1565051_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|315027
NC_007614.1\|WP_011380729.1\|1581953_1583093_+\|TIGR03118-family-protein	unknown	unknown	gnl\|CDD\|132162
NC_007614.1\|WP_146063196.1\|1577211_1577655_-\|hypothetical-protein	unknown	unknown	unknown
NC_007614.1\|WP_011380727.1\|1580215_1580962_+\|hypothetical-protein	unknown	unknown	unknown
NC_007614.1\|WP_011380713.1\|1565076_1569165_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|375703
NC_007614.1\|WP_167535535.1\|1571529_1571721_-\|DUF1269-domain-containing-protein	unknown	unknown	gnl\|CDD\|227140
NC_007614.1\|WP_011380732.1\|1585644_1589634_+\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|273900
NC_007614.1\|WP_011380728.1\|1581008_1581536_-\|DUF1269-domain-containing-protein	unknown	unknown	gnl\|CDD\|227140
NC_007614.1\|WP_104009670.1\|1573006_1573633_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_007614.1\|WP_011380720.1\|1573660_1574425_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_007614.1\|WP_041352446.1\|1569941_1570640_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_007614.1\|WP_011380731.1\|1583744_1585163_-\|hypothetical-protein	unknown	unknown	unknown
NC_007614.1\|WP_011380718.1\|1572598_1573003_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|319909
NC_007614.1\|WP_011380726.1\|1579337_1579955_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NC_007614.1\|WP_011380733.1\|1589681_1590608_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697

Protein	Function_ID	Function_description	E-value
NC_007614.1\|WP_011380717.1\|1571727_1572471_-\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.73506e-109
NC_007614.1\|WP_011380733.1\|1589681_1590608_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.12931e-132
NC_007614.1\|WP_041353007.1\|1574899_1575823_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271180	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase). Cre-like recombinases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.	1.38621e-67
NC_007614.1\|WP_011380725.1\|1578234_1579341_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|235898	PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated.	6.05121e-107
NC_007614.1\|WP_011380714.1\|1569471_1569873_-\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	2.89911e-45
NC_007614.1\|WP_011380712.1\|1559120_1565051_-\|VCBS-repeat-containing-protein	gnl\|CDD\|315027	pfam12256, TcdB_toxin_midN, Insecticide toxin TcdB middle/N-terminal region. This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with pfam05593. This family is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB. This region appears related to the FG-GAP repeat pfam01839.	1.2849e-56
NC_007614.1\|WP_011380729.1\|1581953_1583093_+\|TIGR03118-family-protein	gnl\|CDD\|132162	TIGR03118, PEPCTERM_chp_1, TIGR03118 family protein. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. [Hypothetical proteins, Conserved].	5.07782e-171
NC_007614.1\|WP_011380732.1\|1585644_1589634_+\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|273900	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. The HrpA/B homolog from Borrelia is 500 amino acids shorter but appears to be derived from HrpA rather than HrpB. [Unknown function, Enzymes of unknown specificity].	0
NC_007614.1\|WP_011380728.1\|1581008_1581536_-\|DUF1269-domain-containing-protein	gnl\|CDD\|227140	COG4803, COG4803, Predicted membrane protein [Function unknown].	4.4597e-68
NC_007614.1\|WP_011380713.1\|1565076_1569165_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|375703	pfam18276, TcA_TcB_BD, Tc toxin complex TcA C-terminal TcB-binding domain. This domain is found in the C-terminal region of the Tc toxin TcA, present in Photorhabdus luminescens. Tc Toxin complexes bind to the cell surface, are endocytosed and perforate the host endosomal membrane by forming channels that translocate toxic enzymes into the host. This domain is responsible for binding to toxin TcB. Binding of TcA to TcB/TcC opens the beta-propeller gate.	1.09968e-12
NC_007614.1\|WP_167535535.1\|1571529_1571721_-\|DUF1269-domain-containing-protein	gnl\|CDD\|227140	COG4803, COG4803, Predicted membrane protein [Function unknown].	2.5602e-15
NC_007614.1\|WP_104009670.1\|1573006_1573633_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.39723e-24
NC_007614.1\|WP_011380720.1\|1573660_1574425_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	3.92024e-119
NC_007614.1\|WP_041352446.1\|1569941_1570640_-\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	7.03526e-48
NC_007614.1\|WP_011380718.1\|1572598_1573003_-\|diguanylate-cyclase	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.57175e-27
NC_007614.1\|WP_011380726.1\|1579337_1579955_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.01621e-109

>NC_007614.1|WP_041353007.1|1574899_1575823_-|tyrosine-type-recombinase/integrase
MRERHQRFISAATSENTRRTYRSAIRHFYAWGGALPCDSGAVLRYLLAYSDSLNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITRTQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQIGFFGALRRSELAALMVEELGWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRVTRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKRQGGWRHDGTVQGYIEEAGRFEANAALTLLRRKGKK
>NC_007614.1|WP_011380720.1|1573660_1574425_-|TatD-family-hydrolase
MFVDSHCHLDFPDLASRLDELLARMRENDVSHALCVSVNLQDFPRVRALAENHPNLYASVGVHPDYENLAEPQAAQLASLADHPKVVAIGETGLDYFRLKGDLEWQRERFREHIRAARQCSKPLIIHTREAAADTLRIMAEEGADKVGGVMHCFTESWEVARQAMEMNFYISFSGIVTFKNAVALKDVARRISLDRILIETDSPYLAPVPHRGKTNEPAFVRNVAEEIAALRGVPIEEIGRITTDNFFNLFKAA
>NC_007614.1|WP_104009670.1|1573006_1573633_-|ankyrin-repeat-domain-containing-protein
MAGLVLAASLSQQPYAMGGVYEDLRWAAEDNNTSDISKLLAKGADPNTPDEQGNTLLMAAVRHKNADLVDLLVQAGARLNLRNRYGETAIMLASLHGLEDIVRKLYIKGAEINHEGWNPLIYAATGGHPRIIQLLLEGGVPINSTSDNGTTALMMAARGGHVEAARVLLKNGADPNLRNEWNKTALQWALSRNHSNVAELLKASGAKE
>NC_007614.1|WP_011380718.1|1572598_1573003_-|diguanylate-cyclase
MGVIDFNHYNLRAPRELLDSLKAFYCDVVGLAQGFRPPFDSFGYWLYAGDKCVLHLSETATNEVRHTHISTTFDHAAFTCTGRPEMEARLKQHGILFRKGQVPALGITQLFFKDPAGNGIELSFPDQPVEQSPE
>NC_007614.1|WP_011380717.1|1571727_1572471_-|SDR-family-oxidoreductase
MNKPLHNKVAIVTGASRGIGAEIARTLGGAGANVVVNYAKDREAAEAVCTAIQQAGAEAIAIKADVSNSAEVCRLFDAAIERFQRLDILVNNAGVLLSRKMSDISDDEFDRVLDVNVKGVFYALREAAVRLEDGGRVVNLSSTVTRLMLPNYGAYAASKGAVEQLTRVFAREVGDRGITANIVSPGPVNSEMFTAGKSEETIRRMAAISFLGRVGEPEDIAGVVLFLVSEESRWVTGQNISASGGAA
>NC_007614.1|WP_167535535.1|1571529_1571721_-|DUF1269-domain-containing-protein
MPALYWAVHSASGQKRYPALADYGINDDFIKSLSETIPLNSSALFILVRNAQPEKGSGGAHRR
>NC_007614.1|WP_041352446.1|1569941_1570640_-|MgtC/SapB-family-protein
MTNASDSVTIAVHLLAAVLSGGAIGLERSLHGHPAGFRTHALVCLASSLLMLVTLYQWKWLPPTIAIEAVRMDPVRMAQGIMTGIGFLGAGVIFKEGLSVRGLTTAASIWITAGIGILMGIGFFLPGILGTLLTLGILSLFRLIEDRVPRQSYAQYYVSFDRHKVMPEDQVRALAIDHGFEIATMSYRITRAGLFEYRMDIRTTKAGRAVGLAKALQNIESVREFRVSTTGT
>NC_007614.1|WP_011380714.1|1569471_1569873_-|VOC-family-protein
MQLNPYLNFNGQCETAFKFYEKCLGGKITAMLTFGSSPMAEQTPPEWHDKIMHARLAVGEAVLMASDASPEHYEKTRGMSVALNTDKPEEAERIFAALSENGAVQMPIQPTFWAARFGMLIDQFGIPWMINCE
>NC_007614.1|WP_011380713.1|1565076_1569165_-|tetratricopeptide-repeat-protein
MATKYLSNYYSYKFVPQVLKFGVIEVDPKAALEKQVQEHLASGHRYFFQDEFQNALTEYQTAYALLHKFLHPQFPVDVTAIATVVLKPLQLTEAMIAATAQVAKYRSTITAGPIVAAGSPPREISSVVQKFSGTGSAVVAPPAAVLYEQAAVYLQAGATSEAQPIIQQALELNGGRDLELESNLLVASGIAGVQRGEFDNARDNFAKAFELARRVSAVPGTAPGAAGPGVAGIPGITDVAGEGAAAAVPPARTAELGAISNNIGVVSALTGDARSSGAAFQAAGDSVPLSFGRTLTQPLNPGTATAMQRPMGSEGLGFILNSSSGSNQYMNVSPTVSAASAAQQFGVFKGDQIVSVDLQGDAVANLTATLYQPRITATALPELATFEILEINFIAYIPHTYGFTLPLSLGDCHLELGDYEEAISWYEKARDYPYLNQGIETPMVWLKLANAYLRWGHFLFEGGQKAEARTRYEQIVRLTDPILDPASPLYKSPVFDGLAAQVQAILVAPQPLDPEVHNPSIASVVLLAKLNIQNIQDGIDFPLLSLAREQVPVFRFDYLQNAARYFAEHAIQAERTYINFKTSAEQEEFQRTMLQNAVDLEAANEQLEIKKVEIAQEQKEAIEANQAYANTQLENARDLKEEYADVSLEEMALDAEITYVGAPTTEYDFSGYEEYGISNGTHRVDEVLRTLTRRRREISRDFELNNMDRRISELEAAKRVADEQVDIATKQKEAADIQKNIATLRKQQAEQQLALFDSQEFTPDLWNRLANEIRQISQSYLSQSIVIARLMEQAYEYEVGKAVNIIKPSYNRNDLADLLAGDFLLRDIDSFTFMRIILGEKKQPMKEIISLSDRYPVQFLRDFQRTGTMGFRTELSDFDRNYPGAYLQRIKRVEVIVEGLIGRGGIHASLTNTGLCLSRMRNGGIKMRLLQPETLLLSQYRIAADAVIFTPDGEMLGIFEHSPVSTSWVFELNPAANDIVLNYITDIKLVIYYESFFDPNLKPRVLEELAVTQVNAGRRTVALRYELFDEFFAFQDTGEVTFTLRSTMLPFYHLDPRVRELTFLIETEEGVSAENLTVIVSTADGTTATQSTTADGALSTGGSSPLNAFIGKPWLQEWKITIPVAQNQARFDAGFEWSQVQNIVMTTEYEFTPRRIPGQPYLLLLDRFDADTLANFDVVDDPQATVSAPSQWVFNAAAQRIDQMSSIHGDAFEPGATGPEKPGTYLVRKTTTELPAIQDHIVAVDVSSEDNGGIGVVFRWQDVDNFYYFLMDGQRNYRRMGKKVGGVFQELDTKALDDTHGYETGTTHRLRIRLGGSEMRAYLNDEQILLGQDASLPNSGRAGLFCWGSAGAHFDNFRIVAL
>NC_007614.1|WP_011380712.1|1559120_1565051_-|VCBS-repeat-containing-protein
MANKSPVERQATSNPAGGGDIRGLGETFQPDLNSGVGNYRVPLDLLPGIRNFQPSLALGYSTGAGNGPWGLGWSLLFATISRRTFRGTPSYTEDDTFLFAGQTELVPIGSDTFRASVENGFEQFSRTETGWQVTEKSGIRHTFGTTAESRIEFDDNGTPRVFAWLVERTEDTTGNAITYRYRSEQGQRYIEEIRYAIYAIRFEYEVRPDAFSDFRSGFEQRTTLRCRRITFHVEPLGPAAVRSWSLAYDLAPLSGLSLLRSVTFSGNDPETGESASLPPLQFSYTEFTPSSRRLRKFTAEIGAAPPGLDQPNLELIDLDGRGLPGILSIENGIARYWANTGQLRWAPPRSLPQFPAAFSTAEDRVQFADMDGNGAADVLVGSGTPSGFYRNGGTGAFDGFNRYVRSPQLAFETGGLQLMDVNGDGLVDAVHDGRTGLQVYKNRGAAGWEPPRLVPKDGLPTPVPNLSSGDPRVRLADMNGDKIPDVVLFSSGYFEYWPARGEGHFSESRKMTTAPRFPYPFDPARVFITDINGDGLADVVFVGYDEITYWINQSGNAFSPPQTIRYTPPTSRADTLRVADMSGTGTAGILWTGPYPDYRYLDFTGDVKPGLLSRIDNGLGRVTTIEYATSTAEARRDQEQGQSWMSFLPFPVQVVSAVTIDDAISGLHNVTRYRYHEGHYDGYRREFDGFGRSEQIEEGDASIPSCRTVFHYHTEASGRPSEPDPELRRSLKRKLFRVEVFGEDATPSASAPYRVEESRWIVRIEQTLPDDRRVLFPFVEETVTSTFEREFEARIERRMFSFDASGNVTGEERRGEGGEGAPLIATTRAEYAQDPTGRVRDHVSRIVQRDGDGNLLNELRHYYDGPAFEGLPLGQVTKGLLTRTEKVALHKSTATSVYGAHEPDFPALGYHDGEDQDGEPAWLYDHKRLSLDERGNVLVSRDARGNDTTYTFDEFGLFATSITDAKGFIATVEHDLRIARPRRMVNPNGGVTESRYDPLARIAIVAAPGDTLAIPSVTYSYETSALPALRNTRYRVISGDSRTIAINEYLDGGGALYQRRTEHDGARVSVSGQAVTNVRGKMAEKLESFYAEGLEFEPYPADPSAPRRHFFFDALGRAIRTVHPDGGESSAEYRPFDTLFSDGGDNDPGAEVSFGTPRRELYDSWYRLIGVEERDQSTIRTTRYELDGAGRLRQITDPRGIILSRITRDLTGQEIRIEHVDAGNRLLACDASGNLALQVDAADESINRTYDELNRITATAYGGGEPEQYFYDAGSGANLTGRLARTVAPAGETTYSYDERGNVILRSRLAPGETDALALNYTFDRIGRMTRLSYPDGAVVDFEYYSGFLLRRIPGVVDTIEYTAAGVRTALQYENGVRTEYDYDPVSLRLRELRTHRLETGAVYFHTRYDIDKAGNVAAIEDLRAAAAGFVRTQSFGYDAFNNLLEASSPDPGAGYSHVYEYDQAANFLRNPLISSNPLFYENGGNSNRLSGHNDGINAVTLFGYDANGNVISMPGRTLTFDAKQQLSRVQVAGGTDVVFFYDHKGVLSRREATAGGLTETTHYVDNLFESKDGTTQRWILAGDLPVACVADGMMVFIHNDHLGSAVIYTDAGGNLLTETAFHPFGSVLVAPSGALPPAFATKKLDADIGLYYFNARWYSPVMGRFISPDPLYLYQPEQGLQEPKRLNPYAYAGNNPVRYVDPSGLGFWDVLGAIVIAIAVVVAVVAVSVLTFGVGTAIGFGTLLAYAAVAGLAGAAIGAVVGGIAYGSWEGALRGALIGFTAGANAMIGGMIFGPIIGAALGIITFLAVIPPVAKSDVYQGILGWTSYLMPMSWPGHAIGLVLFALNVVGYLVTFGQVDKLRIRDMQVDWKTGNIFTVGGWVGQLDGRAFNFGGFSFVNTARYVGGEIIPATFEHESGHMLSNAAFGFFQATRVFEGNGLDSFWERIAESNVPPGLRATDPVTPEPDRPKIPQWG
>NC_007614.1|WP_146063196.1|1577211_1577655_-|hypothetical-protein
MTATSWRNFALTSTIITGRRFQPSPRRRRMLRPVHAGYELVCVSAIEAQDAEARLQNLRHCGFPIERMIATDNAEIDDSPKAAALRELQPVVFVDDFLPYLRRIPDNIHAALILREQNGSPNVGANLVWAHSRHADLADFTLWWLNR
>NC_007614.1|WP_011380725.1|1578234_1579341_-|DNA-polymerase-III-subunit-delta'
MSNIYGWQEEVWRKLTGALGHALLLRGRKGLGKLAFARYLAKSRLCENRSVEGKACEVCASCHWFEQGNHPDFCLVEPEAATATSVSGEGAGEEGVETGDEAEVQSLPRAVNQLSGSGKSTKKPSRQISISQIRELGDFVNITSHQNGYKIILIHPAETMSTAAASALLKNLEEPPLQTLFILITHQAQYLLPTIRSRCRQIIMPAPDAASAALWLKQQGVKAPERCLASAGYAPLTALEFANEDYLVRHSAFIQQISTPSGFDVLARAEEMQKSDLVMVVSWLQKWCYDLMSFRMAQKVRYHPDMLAQIKPLASGLDPYSMATYLRALDKTQQLARHPLNPRLFLEELLFSYVTMLSEKSRNRSKAG
>NC_007614.1|WP_011380726.1|1579337_1579955_-|dTMP-kinase
MRGKFITLEGIDGAGKTTHLRWLEYFLKERGKNVMVTREPGGTPLGEALRDILLDSRQTMHAETEALLMFAARREHLDKVILPALSRGEWVISDRFTDASFAYQGGGRGLSLQKLNELECWVQGEFQPDVTLYLDVSIASGRQRTSNIRQADRFEKEQDEFFRRVREAYLERAKEFPERIRVIDANQSLEDVRRSVEKSIATIYA
>NC_007614.1|WP_011380727.1|1580215_1580962_+|hypothetical-protein
MTDDTGSLFARWALLFALMPGILIPGVSSAAAQPAERNRQDRPAPDTTESASLPRGQPLTEFEKMQLHHRRYSAAANNMAHLFKLLNQKIQEVSLAAKTVEAKDNSHNRRQLEIRLQQLESARVAYGVQYLQLQAQMQNEYRNYAALSNDLKAKHDGPARSRGESAGDTGSAKAKPGVSKSAKAKSMEDKDTGSDAKAKESPIEEQFATDSPARDPRILDLDTKEVRARREGRSTESSGSSLPAPGQP
>NC_007614.1|WP_011380728.1|1581008_1581536_-|DUF1269-domain-containing-protein
MSDLVVIGFENPQKAEEVLWRLRSLKRQHLIDLEDAVVVVRDEQGEINLKQSINLTHYDTSAGLLSGGLLGTFVGMLFLNPIAGLLIGSMIGAGAGALSGSLTDYGIPDDFIKSLGETVPLNSSALFILVRKVDPEKILAELAEFKGKVLSTNLSRDQEQRLKEALGGVPRTAAP
>NC_007614.1|WP_011380729.1|1581953_1583093_+|TIGR03118-family-protein
MRQIRSYLPSLAATAGVMASLLAIPAGAVTFTPTNLVTDDPLAHAAQITDTGLKNAWGMSYAPGGPFWVSSTDGGTVRLYGVNPATQAAVQRPLTVSIPGEGSVTGQVFNSTSSFGDNRFLFVSEDGTVSGWRPTLGTTGLIPAETLVPASPNNSYKGAAIGNTGGHDYLYAANFKAGTVDVHKGDAGAPSLSGSFTDPGLPSGYAPFNVQNLNGSLYVTYALQNAARDDEVAGAGLGFVDQYTLNGDFVARVASGGTLNAPWGLAVAPSSFGSAAGDLLVGNFGDGHINIYDPNTHTFLGQVLDANNHPVVIDGLWSISPGNDTLAGSSHLLYFTAGPDDEAHGLVGVLTPVPEPSAYAMMLAGMGALMLLIRRRTPG
>NC_007614.1|WP_167535562.1|1583311_1583512_+|hypothetical-protein
MRETDTFLRDPCSFSEILDSNNSMLGLGLLSVVSEDEARDFDAETKNEEKCADPDIFRREEHQYSA
>NC_007614.1|WP_011380731.1|1583744_1585163_-|hypothetical-protein
MRATIQFSQPDKKFDILQKLFSFVKGFKNLRQHILEQGILLERLNSGEIENVQRALAGINYLEGRVIDNSVRIFVTDGELRALFDLMMPVSRKQNDFSRILWERGFTIEELSQDQAENLRNQFSAIATVTIGPDVPRTRIYTVGGQIFQEDGVPLCARGFTVCAFDALSVNTFVRCGAMGAVQEDGFYRIDYAWRSNGRIGPDLFVRVFDPEGDIVAEARKNPAAVQEFLDITVKTLCIVRGTIRQVDDFPLPHLLVRAFDRDMRAETLLGQAMTDAEGSYQITYGTNKLRMKDKADLIVRVFEPADSEGKETGDEIGASEIIFNAPLQQAVDLEVKSGKFRGPSEYERYITALKLLIEGEPVHQLTDKDLSFLGGKTGIPLEHLNYLRLDDQWCFHYSMEPAVVYSLLRQGLPADLHHLSTEKPTRLHEALQASLAHNIAPAVLADKVDQAIKPLLSLADSMVFELERRAK
>NC_007614.1|WP_011380732.1|1585644_1589634_+|ATP-dependent-RNA-helicase-HrpA
MKNSPIVNAKSRNFEQRLANLPKPAYPEELPVVALRQEIAQAIQKNQVVIISGETGSGKTTQLPKICLELGWGLHAMIGHTQPRRIAARTVAARIASELKSPLGHAVGYKVRFSDKVSPETYVKLMTDGILLAETQGDPNLLAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIVTSATINSERFSAHFHNAPVIEVSGRMYPVEVRYRPIEAPARAASAIAEDRNEDKAGNKTRDKDKDRQKDKHKDRDRDEGDIEQAILDAVDEINRCGPGDVLVFLPGEREIRDTAEALRKHAFGGPGTGRAGAEILPLFARQSYADQERVFKPGGSSLRRIVLATNVAETSLTVPGIRYVIDTGVARIKRYSYRNKVEQLQVEKISRASANQRAGRCGRVMSGICFRLYSEQDYLARPEFTDPEILRSSLAAVILRMKSLKIGSIENFPFLEPPLPRMIADGYQLLAELGAVDESNTLTSIGWRLARFPIDPRIARMILAAKEENCLTEMLIIASALSVQDPRDRPFERQEAADRAHQSFQDERSDFLGYLKLWDFFDDLLKHKKSNRKLIEQCQENFLSHRRMREWREVHGQLHTLVVETGFKPNKIPANYDEIHRALLAGLLGNIGFRIDEDNEYLGTRGIKFSIFPGSVLKKAKPKWIVAAELTETTRLYGRGVAKIDPAWVERIGGKFCKKHYFDPHWEKKSAQVSAFERVTLYGLTVVPKRRVYYGNINPKEAREIFIRSALVAGEYITQAPFFKHNHELIANVAALEHKTRRPDVLVDEQEIFVFYDGLIPEGISNGAAFEKWHREAERENSRLLYIPKEYLMRHTAQSVTEERFPDTMLVDGFPLSLTYRFDPGHVLDGVTITVPLPLLNKLDATQFDSLVPGLVREKITWYLRALPKQIRRHVVPVPEFVTQFLESAEHAAATSPPEPSPSLLTETLARFIRTKTGLTVPPDAWDEKPPSHLMMNYKIVDDAGQELAMNRDLGQLKTQLGQAAQLTFSRSESGEHNPLERDDVKHWDFGDLPQEITFTRAGKNMTGFPALAERDGKVAIRLFDTREAAELSMRGGVRQLLGFELKEQMKQLEKDLSGQGAKSGKGRYLAQAAFQLHTLIKPEQLKEDILNAVADRAFIADDALPRSEKEFVAQRQRARTRLPAVSEALVRIVQNVASESQVLMARISSIGGTGKVGVQKTGAASGGGSGNPGADLMIQLRNLVYPGFLSATPWERLQHLPRYLKGMILRLDKYDANPERDARHAAAIAGLWNRYEQRLEKHRKARIDDPRLVEFRWQIEELRISLFAQELKTPSPVSAKRLQKLWEEINSTV
>NC_007614.1|WP_011380733.1|1589681_1590608_-|D-hexose-6-phosphate-mutarotase
MNIEELNKNHGIDGQVKFMEGAGGFPFIRVDNAKGGAVISVYGGQVLSFQPANEQNLMFLSEAAYYEAGKGIKGGAPVCWPWFGPDPQQQGRPVHGFVRTRLWNVIKTETTGNGDSKVTLGLSDTAETRAIWPHAFDLDLEVTVGNSLNLELITRNKDTAPFSITQALHTYFKVGHIDRITILGLEGVSYLDKVDNYAQKTQAGAITINSEVDRIYQDVQKELVIDDTAYDRRIRIQSSDSRTAVVWNPWARISAQMGDLKDDDYEHFVCVETANAGSEVVEVAAGGECRVAANYLIERNIPELKPAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50135 : 62150

Dickeya_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041352685.1\|50135_53867_+	methionine synthase	A0A140XBC7	Dickeya_phage	5.3e-12	60.3
WP_193363987.1\|53990_54744_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.3e-22	43.5
WP_011379412.1\|54841_55651_+	hypothetical protein	NA	NA	NA	NA
WP_011379413.1\|55668_56367_-	SOS response-associated peptidase	NA	NA	NA	NA
WP_011379414.1\|56538_58686_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	9.8e-11	34.3
WP_011379415.1\|58819_59026_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_011379416.1\|59208_59841_-	guanylate kinase	A0A218KC48	Bacillus_phage	8.6e-16	36.1
WP_011379417.1\|60013_60454_-	thioredoxin TrxC	F2WLG3	Lausannevirus	2.1e-13	39.8
WP_148235530.1\|60898_62150_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	7.3e-67	49.5

DBSCAN-SWA_2

1873694 : 1933195

Paenibacillus_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146063213.1\|1873694_1874021_-\|transposase	transposase	NA	NA	NA	NA
WP_167535569.1\|1874349_1874487_-	hypothetical protein	NA	NA	NA	NA
WP_011380965.1\|1874669_1875008_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_011380966.1\|1875026_1878086_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.3e-82	25.3
WP_011380967.1\|1878082_1879237_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_104009757.1\|1879349_1880729_-	TolC family protein	NA	NA	NA	NA
WP_148235532.1\|1881788_1882545_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-12	31.5
WP_080557682.1\|1882538_1883072_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_148235532.1\|1883102_1883860_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-12	31.5
WP_080557683.1\|1883896_1884193_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011380969.1\|1884658_1887217_+	cation-translocating P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	3.0e-67	29.5
WP_080557717.1\|1887552_1887861_-	BON domain-containing protein	NA	NA	NA	NA
WP_011380971.1\|1888137_1888920_-	TSUP family transporter	NA	NA	NA	NA
WP_011380974.1\|1891996_1892929_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_011380975.1\|1892976_1894512_-	alternate F1F0 ATPase, F1 subunit alpha	NA	NA	NA	NA
WP_011380976.1\|1894619_1895495_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_011380977.1\|1895498_1895780_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_011380978.1\|1895789_1896545_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_011380979.1\|1896550_1896892_-	hypothetical protein	NA	NA	NA	NA
WP_011380980.1\|1896888_1897380_-	AtpZ/AtpI family protein	NA	NA	NA	NA
WP_011380981.1\|1897411_1897804_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_011380982.1\|1897883_1899296_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_011380983.1\|1899976_1901338_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011380984.1\|1901653_1902781_+	HD domain-containing protein	NA	NA	NA	NA
WP_011380985.1\|1903065_1903302_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_011380986.1\|1903294_1903642_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_011380987.1\|1903660_1904467_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_011380988.1\|1904463_1905621_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_011380989.1\|1905706_1908019_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_011380990.1\|1908008_1909013_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_041353067.1\|1909022_1910816_+	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_011380992.1\|1910812_1911550_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_011380993.1\|1911539_1912088_+	NADP oxidoreductase	NA	NA	NA	NA
WP_011380994.1\|1912153_1913635_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA
WP_041353068.1\|1914023_1914629_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_104009750.1\|1914640_1915138_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_011380997.1\|1915118_1917788_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011380998.1\|1918217_1919084_+	HAF repeat-containing PEP-CTERM protein	NA	NA	NA	NA
WP_011380999.1\|1919224_1920118_-	universal stress protein	NA	NA	NA	NA
WP_041352502.1\|1920151_1921846_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_011381001.1\|1921970_1922483_-	hypothetical protein	NA	NA	NA	NA
WP_011381002.1\|1922672_1923503_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011381003.1\|1923506_1924790_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011381004.1\|1924882_1925224_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011381006.1\|1925736_1926171_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_011381007.1\|1926343_1927204_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_167535570.1\|1927225_1927390_+	hypothetical protein	NA	NA	NA	NA
WP_148235532.1\|1927593_1928351_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-12	31.5
WP_167535571.1\|1929089_1930148_+	Type 1 glutamine amidotransferase-like domain-containing protein	NA	NA	NA	NA
WP_011381009.1\|1930426_1931335_-	ion transporter	NA	NA	NA	NA
WP_041352505.1\|1931456_1931933_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_011381011.1\|1932052_1933195_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.1e-42	37.7

DBSCAN-SWA_3

2310762 : 2324595

Paenibacillus_phage(33.33%)

transposase,integrase

attL 2322277:2322298|attR 2332855:2332876

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011381327.1\|2310762_2311752_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.3e-21	32.4
WP_011381328.1\|2312041_2312329_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_041352554.1\|2312578_2312932_-	VOC family protein	NA	NA	NA	NA
WP_011381331.1\|2315212_2315692_+	RHS repeat protein	NA	NA	NA	NA
WP_011381332.1\|2315732_2316035_+	hypothetical protein	NA	NA	NA	NA
WP_193363987.1\|2316072_2316826_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.3e-22	43.5
WP_104009795.1\|2316875_2317736_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_104009798.1\|2318129_2319211_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-40	36.7
WP_011381335.1\|2319474_2319711_-	recombinase family protein	F1BUU6	Erwinia_phage	1.5e-13	51.9
WP_167535582.1\|2319714_2319879_+	hypothetical protein	NA	NA	NA	NA
WP_148235541.1\|2320058_2321311_-\|transposase	IS3-like element ISNmu3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.3e-67	49.5
WP_011381338.1\|2321683_2322382_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
2322277:2322298	attL	NA	NA	NA	NA
WP_148235532.1\|2322552_2323310_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-12	31.5
WP_041353182.1\|2323346_2324015_-	hypothetical protein	NA	NA	NA	NA
WP_080557720.1\|2324025_2324595_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
2332855:2332876	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007615

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007616

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_007614

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection