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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009348 Aeromonas salmonicida subsp. salmonicida A449, complete sequence 11 crisprs csa3,DinG,cas3,DEDDh,WYL,TnsE_C 0 0 7 0
NC_009349 Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence 2 crisprs NA 0 3 1 0
NC_009350 Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, complete sequence 0 crisprs NA 0 0 1 0
NC_004925 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa2, complete sequence 0 crisprs NA 0 0 0 0
NC_004923 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa1, complete sequence 0 crisprs NA 0 0 0 0
NC_004924 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_009348
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_1 1539-1625 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_2 196465-196563 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_3 1216945-1217089 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_4 1684946-1685069 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_5 2868865-2868960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_6 3261270-3261404 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_7 3324082-3324172 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_8 3675008-3675120 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_9 3920438-3920537 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_10 4446086-4446228 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009348_11 4528834-4528927 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1587728 : 1680948 92 Aeromonas_virus(66.67%) transposase,holin,integrase,portal,plate,tRNA,head,terminase,capsid,tail attL 1635685:1635706|attR 1673070:1673091
DBSCAN-SWA_2 2596427 : 2633525 31 uncultured_Mediterranean_phage(16.67%) transposase,protease,tRNA,plate NA
DBSCAN-SWA_3 3267440 : 3322899 49 Bacillus_phage(18.18%) capsid,transposase,tRNA,integrase attL 3317719:3317734|attR 3325959:3325974
DBSCAN-SWA_4 3750736 : 3760660 10 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_5 3879707 : 3887904 6 Klosneuvirus(16.67%) NA NA
DBSCAN-SWA_6 4079826 : 4158663 81 Aeromonas_virus(78.57%) holin,transposase,integrase,portal,plate,tRNA,head,terminase,capsid,tail attL 4082830:4082845|attR 4159049:4159064
DBSCAN-SWA_7 4573219 : 4640552 53 Indivirus(13.33%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_009349
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009349_1 2971-3101 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009349_2 134704-134815 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NZ_KT033469 Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence 41059-41091 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 MF495478 Aeromonas salmonicida plasmid pS121-1b, complete sequence 75548-75580 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NZ_CP034301 Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence 87656-87688 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NZ_CP022170 Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence 77998-78030 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NC_016852 Aeromonas hydrophila plasmid pAHH01, complete sequence 2909-2941 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 MN865127 Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence 171654-171686 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NC_009349 Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence 2988-3020 0 1.0
NC_009349_1 1.1|2997|33|NC_009349|PILER-CR 2997-3029 33 NZ_CP038450 Aeromonas media strain R50-22 plasmid pAeme6, complete sequence 75578-75610 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NZ_KT033469 Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence 41004-41032 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 MF495478 Aeromonas salmonicida plasmid pS121-1b, complete sequence 75493-75521 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NZ_CP034301 Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence 87601-87629 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NZ_CP022170 Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence 77943-77971 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NC_016852 Aeromonas hydrophila plasmid pAHH01, complete sequence 2968-2996 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 MN865127 Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence 171713-171741 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NC_009349 Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence 3047-3075 0 1.0
NC_009349_1 1.2|3056|29|NC_009349|PILER-CR 3056-3084 29 NZ_CP038450 Aeromonas media strain R50-22 plasmid pAeme6, complete sequence 75637-75665 0 1.0
NC_009349_2 2.1|134732|56|NC_009349|CRISPRCasFinder 134732-134787 56 NC_009349 Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence 134732-134787 0 1.0
NC_009349_2 2.1|134732|56|NC_009349|CRISPRCasFinder 134732-134787 56 NZ_KT033469 Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence 96755-96810 0 1.0
NC_009349_2 2.1|134732|56|NC_009349|CRISPRCasFinder 134732-134787 56 NZ_KT033470 Aeromonas salmonicida subsp. salmonicida strain JF2267 plasmid pAsa4c, complete sequence 72890-72945 0 1.0
NC_009349_2 2.1|134732|56|NC_009349|CRISPRCasFinder 134732-134787 56 NZ_CP022176 Aeromonas salmonicida strain S44 plasmid pS44-1, complete sequence 72984-73039 0 1.0

1. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NZ_KT033469 (Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

2. spacer 1.1|2997|33|NC_009349|PILER-CR matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

3. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

4. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

5. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NC_016852 (Aeromonas hydrophila plasmid pAHH01, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

6. spacer 1.1|2997|33|NC_009349|PILER-CR matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

7. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NC_009349 (Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

8. spacer 1.1|2997|33|NC_009349|PILER-CR matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 0, identity: 1.0

ggcagatcaaagtattcaatgagttaacgatac	CRISPR spacer
ggcagatcaaagtattcaatgagttaacgatac	Protospacer
*********************************

9. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NZ_KT033469 (Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

10. spacer 1.2|3056|29|NC_009349|PILER-CR matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

11. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

12. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

13. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NC_016852 (Aeromonas hydrophila plasmid pAHH01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

14. spacer 1.2|3056|29|NC_009349|PILER-CR matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

15. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NC_009349 (Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

16. spacer 1.2|3056|29|NC_009349|PILER-CR matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 0, identity: 1.0

caaaagtaatactacatctgctccgtgag	CRISPR spacer
caaaagtaatactacatctgctccgtgag	Protospacer
*****************************

17. spacer 2.1|134732|56|NC_009349|CRISPRCasFinder matches to NC_009349 (Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	CRISPR spacer
tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	Protospacer
********************************************************

18. spacer 2.1|134732|56|NC_009349|CRISPRCasFinder matches to NZ_KT033469 (Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	CRISPR spacer
tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	Protospacer
********************************************************

19. spacer 2.1|134732|56|NC_009349|CRISPRCasFinder matches to NZ_KT033470 (Aeromonas salmonicida subsp. salmonicida strain JF2267 plasmid pAsa4c, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	CRISPR spacer
tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	Protospacer
********************************************************

20. spacer 2.1|134732|56|NC_009349|CRISPRCasFinder matches to NZ_CP022176 (Aeromonas salmonicida strain S44 plasmid pS44-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	CRISPR spacer
tgctcccctgtctgaccaccagcatccactgacgtatcccgaggctcctcagtcac	Protospacer
********************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 34882 : 96613 57 Staphylococcus_prophage(15.38%) transposase,integrase attL 82128:82157|attR 100817:100846
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_009350
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 85032 : 140931 48 Acidithiobacillus_phage(18.18%) integrase,transposase attL 89964:90023|attR 139109:139427
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage