CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010160	Bartonella tribocorum CIP 105476 plasmid pBT01, complete sequence	0 crisprs	NA	0	0	1	0
NC_010161	Bartonella tribocorum CIP 105476, complete genome	4 crisprs	cas3	0	2	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010161_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010161_1

1164482-1164619

Orphan

Consensus_repeat	Method
TAAACGTTATCGACCAGGAGATCGAATTCTTGAACTTGGTGATGATGTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010161_1

>merge|NC_010161|1|1164482-1164619|CRISPRCasFinder
TAAACGTTATCGACCAGGAGATCGAATTCTTGAACTTGGTGATGATGTTTACGTAGCCGATTATCCTCTTAATCCCAGCAATTCAGGTAAACGTTATCGACCAGGAGATCGAGTTCTTGAACTTGGTGATGATGTTTA

>NC_010161|1|1|1164482-1164619|CRISPRCasFinder
TAAACGTTATCGACCAGGAGATCGAATTCTTGAACTTGGTGATGATGTTTA	CGTAGCCGATTATCCTCTTAATCCCAGCAATTCAGG
TAAACGTTATCGACCAGGAGATCGAGTTCTTGAACTTGGTGATGATGTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010161.1\|WP_012231673.1\|1158418_1158799_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231684.1\|1169928_1170507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223974
NC_010161.1\|WP_012231625.1\|1180463_1180769_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231679.1\|1162074_1162998_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231685.1\|1170588_1171362_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223974
NC_010161.1\|WP_038474548.1\|1179946_1180258_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231670.1\|1156387_1157554_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NC_010161.1\|WP_012231675.1\|1159096_1159408_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NC_010161.1\|WP_012231687.1\|1173597_1178559_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|227226
NC_010161.1\|WP_012231672.1\|1158026_1158407_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_158305290.1\|1181231_1181381_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_007347430.1\|1181478_1181679_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225848
NC_010161.1\|WP_012231674.1\|1158831_1159116_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|226162
NC_010161.1\|WP_012231678.1\|1161647_1162073_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231686.1\|1171444_1172215_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273834
NC_010161.1\|WP_012231680.1\|1163037_1164474_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231682.1\|1166713_1167394_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366654
NC_010161.1\|WP_012231676.1\|1159481_1160189_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231677.1\|1160190_1161648_+\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231683.1\|1169044_1169824_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010161.1\|WP_012231686.1\|1171444_1172215_-\|hypothetical-protein	gnl\|CDD\|273834	TIGR01853, UDP-3-O-acylglucosamine_N-acyltransferase, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.16633e-05
NC_010161.1\|WP_012231674.1\|1158831_1159116_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|226162	COG3636, COG3636, Predicted transcriptional regulator [Transcription].	6.64297e-26
NC_010161.1\|WP_007347430.1\|1181478_1181679_-\|DNA-binding-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.09991e-11
NC_010161.1\|WP_012231685.1\|1170588_1171362_-\|hypothetical-protein	gnl\|CDD\|223974	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].	4.87474e-07
NC_010161.1\|WP_012231675.1\|1159096_1159408_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	8.43598e-41
NC_010161.1\|WP_012231682.1\|1166713_1167394_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|366654	pfam01464, SLT, Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.	5.41748e-13
NC_010161.1\|WP_012231670.1\|1156387_1157554_-\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.01645e-42
NC_010161.1\|WP_012231684.1\|1169928_1170507_-\|hypothetical-protein	gnl\|CDD\|223974	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].	3.95575e-09
NC_010161.1\|WP_012231687.1\|1173597_1178559_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	0

>NC_010161.1|WP_012231680.1|1163037_1164474_+|hypothetical-protein
MAFPLLFPLAGAAFMAARAAPHIFRYIAPKAVTGANRLGQLITKSPVGKFVTKNPKSSAFTVGGAAIESMMTPEKAHAPNNPYLQSMQNPYGPFMPYTVPGVEMPLGVDQQPPMPNALEEAPEDLKTHVNEQMQSLAPASQTPPREPTDAEKFLQSNTYKFFQSDAYQKLKDLFAGMAESSSDGSGWDALASGVKRLNEGDKQRGQVNQTVEYLKSKGYSEEEAAIMARNPQMLSALLTGGKSPEGFQSYTNPETGELEYRPVKGSMQELEYNQKLQAQKEWEGRRIKNMFTTKQQLRAGLNDLKAAFKLIQKGKATGFKGWFSKKAGGSDGYKLDKLLEGIRGGVLRTVFENLKSMSSSGTVGTGPISNFESQALSSMFGSLDVGRDKEGLERTLKVIKTAFDFFNRHNDLQLYNALTGQPIDTPQEISEKYFVDSPVSQGGSASLPIISSREELDRYPLGTIVNYNGHPVYKGAKR
>NC_010161.1|WP_012231679.1|1162074_1162998_+|hypothetical-protein
MGSETPSTTQQKQVQTSAPPAWMQNVFKRGGADAYNLYDTGMGGNVYGGPRVAPLSDQTLYGIGGLGSIPNHYQNRSLMNTIYNPTSSMMNLRHVASGGMMGENSYFKQALQEALDDSDTQINRYFSGIGRYATPDHREEVRKGRDSIYARAMLEQYNRDADRMMQANAMIDQANQNQLGASNNFLQGYGNAYSNAIQGGGVLDTHNQRVVDANRERWLEQDNSGWNRLNMLMNAGHGFARNYGTTTNNSTSSKMEGNSPWKNAGVIGSLALQAAPMAFGYMAGGPMGAALAAGAPYAFLDYMNKKQ
>NC_010161.1|WP_012231678.1|1161647_1162073_+|hypothetical-protein
MAKVYLTTSWDMERIAPYLEDIIASFRAYVERFKHEITLQDLIEAICSGKKQLWLVLDDDARFLAAVTTQIQQTVLGKKRALICECSGKGVLDQVDNLQIAEDWARENGAFEIEILGRLGWKRALTKQGYGITMLYYRKEL
>NC_010161.1|WP_012231677.1|1160190_1161648_+|hypothetical-protein
MVYFPIADYRPDVAVVNGSFTDTLVNVLPADGGYIPMPSAMVVSHPLEEKPLGCIAFRSGDGVKIIVGGKQKLYSYDSQTKGWKDISQSGVMYQANEDNQWSFALFGESIIAVNKNDKPQIFKVRSSERFEELGGNPPKAGLVKVWGDFVCLMQLTDHPNRIHWSGLNDATHWTVGDKDCYYHNFNDGEYVQGATESSNPLVFLRSAIYAGCFTLGSKVPFIFQKLQDKRGARSAASIACRGSDAFFAGDGGFYQMSADGQFLPIGFEKVDRTVFKSFDKFALDEMQGVIDPIDNRIYWSLKRGNNEQTTFVYDWGLQKWSTIQGKPFTLFPVFTTGYTLEQLDEISINLESLPASLDSPRWQSGAPMLGAFDENNCLVMFTGAPMEATVVSQEMGAPDGSFNFITKMFAEVDTTQGLLSIGERRLRNHQTPITWHKERECSYATGAYHGRSRNRYHRFKLRIPKNEPWTAITGFDVDLRPLGRG
>NC_010161.1|WP_012231676.1|1159481_1160189_+|hypothetical-protein
MTRHYIRVRTGGPIPASQNVYRHRKTLSHLVSVIQDEIDDTTDEYVAQIQESIFAAIRFCERESFYFNESRDVTFQTRAGQGIYDASDTRHLETAVKIKSVYLKSDQHHKLELERRSPFALEASLSSEQQGTPVCYSYFDRKLYLYPTPDKAYQIQLILSPQRLSEIERVDEEHPWFVHGFDLIKARAKYELYKNILKEPDCATAAYNDFTEQLHELRAETSKRHNVTRIIPTDF
>NC_010161.1|WP_012231675.1|1159096_1159408_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MVAIIKTTDEFDEWLEKLKDRKAANIILTRLHRIRSGLLGDAKFFNGIGELRIHYGAGYRIYFTQKGDRIIILLCGGDKSTQSNDIQKALSLVKDLKNEIENL
>NC_010161.1|WP_012231674.1|1158831_1159116_-|putative-addiction-module-antidote-protein
MKLKTFNFEKHLTTPESQEVFLNEAFKTGDAAHIADAIGIVARAQNMCTLAKETNRERSGLYRSLSKTGDPKLSTLVAVLSALNLQLSVQSATS
>NC_010161.1|WP_012231673.1|1158418_1158799_+|hypothetical-protein
MADYLPEPLQGRNLHTQQVSFLRLNFSYQDKEKVMKIGTLPRGALITSIKAFIKTAFSDTKVKIGSTAGGTEFGELEIKQAGIKAATISNQKEFVPSDKEITLYAKADKTVQAGQASIVVEFVTNH
>NC_010161.1|WP_012231672.1|1158026_1158407_+|hypothetical-protein
MADQLPPPLQGRNLHTQQVSFLRLNISHKEKHLTEKIGILPRGALITSIKAFVKTAFSEAKLKIGSTYGGNEFGEKDIKAQNTQDFTPTDQKVFAPEDKEMTLYATRDKTTDAGECVVVVQFVANH
>NC_010161.1|WP_012231670.1|1156387_1157554_-|site-specific-integrase
MALMNRLNARAVATLGAGKYNDGAGLLLHKRKDGGAQWIYRYTIHGRRREMGLGALRDVSLKQARELATGWRSVLREGRDPIKERNKQKREAISNLHYLKDIALDTFESRKAELKNDGKDGRWFAPLQLHILPKLGCFPVSEITQTEIRNTLAPIWHTKADTARTALIRLKLCLKHAAALGLDVDLQATEKARALLGKQRHKTQNFPAMDWKDIPAFYKTLCEASTLTQLALRLLILTGVRTNSLRHIREDQIEDDIWTIPAENMKGKRDTTKEFRVPLSSEALDILKQARLLSRNDFFFSATGRGPLAANCMAQYMQQTGLNACPHGFRSSLRDWLAETTDAPYEVAETILSHTVGGKVERAYRRTDYLEQRRVYMDKWAAYVTGQS
>NC_010161.1|WP_012231682.1|1166713_1167394_+|transglycosylase-SLT-domain-containing-protein
MPRYNPSVDQAIRQAAARYGLPESYLYRVAQVESGGNPNARNPRSSAGGLYQFIDSTAKQYGLQDRFDPMQAADAMGRLTLDNRNHLSRVLGRAPTDAELYLAHQQGAGGAARLLQNPHANAAQLVGSNAVGLNAGNNAMRASDFVNRVLQMYGGQPYRASPIVQGGFGNRDNMLEVLRALLASQEESSEEEESDEDDNPLMTPFMRAFYGPFYPKLGFILYRKIQ
>NC_010161.1|WP_012231683.1|1169044_1169824_-|hypothetical-protein
MCKKYELTSEIKKIKHALTRNITSLYRIRALRDFDDIKAGALGGFIEKEVNLAHDGNCWVYDDACVYGHARVYDDAKIRHYSQVCGLVYGNAEVYSKAFISQYAKIYDQACVYGSAHVYGNVYGNAHVSGAARVLADAHIYDHAHVSYDATVFSYARVYGHARVCGSACIYSHAKIYNYAVINGRAKIYGKVYGNARVGGSCEVYGSVYGNAKILHCATIWGRAYGNATINTKSKAKLVPKNCEVYQSDNVVKIIDKTE
>NC_010161.1|WP_012231684.1|1169928_1170507_-|hypothetical-protein
MQKKFALTNETRVFGNHTLYRIQALKDFADVKAGALGGFIEKEDNLSHDGNCWVYDDALVFKNGHVYENARVFGKAVACGHIYGHARVYDNAIAAGYIYDNAHVYGNAVVSDNSRVYGNAHVYGKAIIYDNAYVYDNARVYENARIANDVHIYENAHIHGIAVIRENVGGSTKIKTYTERLSPYGELEIVWV
>NC_010161.1|WP_012231685.1|1170588_1171362_-|hypothetical-protein
MSTITASKKYELTNENHTFEGITVHRIRALRDFDDVKAGALGGFIENESNLSHDGNCWVYDNATVFCNAVVSDNAKIRNDAIIARGSKVYGNAVVCDKAWVFGHDASIYDNAKISNNARICGLVYGNAMVCDNANVSPNAHIYDNARVYENAHVSGFVYGNSHVYGKSRIYGGACIYGNAHVFCNAWIKSFASIFDDAKVSGSARVGSFARIYENAKVYGKSNIDHDVQIYGNAVVNSREKITNDICDDNQSIKDAA
>NC_010161.1|WP_012231686.1|1171444_1172215_-|hypothetical-protein
MTNILKNTPLLSNISNEIASVNQKEPAKKYEFIDDCEYIDGHFLTRIRALRDFDDVKKGDLGGYIESEDNLSHEGNCWVYNKARVFQNARVFGNAKVKSFFVDVYGNAQIYGNAIFEGRTLKDNAKLSGNAHASNAVVIEGNAQLYDNAYVTDYAHISDNAVICDNAHVGGNAKISGSAYICDDARVFDDAMVCDALISGNSYIHSNASLTANEDVCDDAYPEFGSEDDYYRHEYYADCEGYYDDDNDSEYESDAA
>NC_010161.1|WP_012231687.1|1173597_1178559_-|DEAD/DEAH-box-helicase
MLQSLKSDHEHVTLRSLLEYYRQQAKSLRELGTLFENLVIAYLTKDPLHYGRYEKVETYYEWAKEREGWNKNDIGIDLVAKLRNQEGYVAIQCKFYQADHQISKKDIDSFIAASGKDIFKYRLLVDSTEVELSDNVNAMIKGQAIPVYRIDLRHMENSRIDWQIYATKKEVLLKSTKKPRPHQEEAIKKVCEGLKEADRGKLIMACGTGKTFTSLKIAETLAGKGKRVLFLVPSLALVSQTIREWTTDAQVPLRSFAVCSDTKVGKRRKNQEDIVGMETSDLVLPATTDAQALAKEACENLEDAMTVVFSTYHSIQVISDAQKEHGLPEFDLIICDEAHRTTGASLGSEDNESEFIKVHDNSIIRGKKRLYMTATPRIFSDTAKRRADEINAVLASMDDETLFGKQLHHYTFAEAVDNELLTPYKIVVLGINETYITPAIQEIIANENREIDLDDAAKIIGCYRALTKIDKQAAIDDDDTEPMQCALAFCKDINTSQYITKLFNKIIKSHIDDFLQTVPFLNCEVRHIDGTQSVKKRNEELDWLKEDTGQNVCRILSNVRCLSEGIDVPALDAIMFLHPRNSQVDVIQAVGRVMRRAPNKKTGYIILPIIIPSHLEAKKALKNNKRYRVIWQVLDALHSHDERLARTINQMSLGQDSSHTIEIIEIKRANELQELTTTVDEISIPSKTESSGHTIGTAESKTQSVSGGQGDLFPRSEFFDFVKAIFLDSFKITDYWGIWANNVAEIAQNHINHLKDMISDEKSEAFHAFDAFHKELKNNVNSEIKKEEAIEMLAQHLVTRPVFEALFDGNEFVQNNAISQAMDKILTELDKTNIEEKTKDLDKFYKSVTFCTAGITETHAKQNLIIKLYESFFAKAFKKTTDKLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIETTYHSLMKGEYIPFKHIGLTDTFRMLEEKNLLQELFKENSEYLEYQKKLDIKVIFGNPPYSVGQKNENDNAKNTPYPILDNRIRETYAAQSKVTNIRALYDSYIRAIRWASDRIDNAGVIGFVSGSGYIDKPTMDSLRKSLAKEFTSIYVLNLRGDIRKNMMNKNNAQEGENVFGNGSMTGIAVTLFIKNPNVSGDCKIYYHDIGDNLTTKEKLTALEYFGSIGGVMRESGWQLIKPDEHGDWIKQRDDSFATFLTLGDKKGNNNKKLFETFSRGIITTRDIWAYNASHQALANNMSNMIAFYNSEVERFNDAYTDTDRKKRAKAVNDFVNTDERKISWSRALKQDLVKGKIFEFEETYLTQSLYRPFTRQWLYYSRTFNEMVYQIPRIFPMEKVVENMVIQVASVGTMSGFSVLMSKDLPNLHAIDTGQCFPRYIYEDTTVSESKNERQSHLFTEANTTAGLQRRDAITDEGLAHFKAAYPNEKITKDDLFYYVYGLLHSEDYRARYADNLCKELPRIPCVKNADDFWKFVTAGRELGHLHVNYEDVEPYPVTFKKGNPKLTDISNPEKFYYVTEMKFAGNSKEKDKSTVIYNSNITITDIPLEAYEYIVNGKPALEWVMGRQCVKTDKKSGIVNDANRYAVETIGNPAYPLELFQRVITVSLETMKIVKNLPKLEIRETE
>NC_010161.1|WP_038474548.1|1179946_1180258_-|hypothetical-protein
MVSSLETALIEIGVVKDHIKLVSNPEKYDAINRGHSLSKHRKGGLPYDEARKAMASHYTRLGNLDKARLTSIEKSIIDVRRENIKAMQKLYEKMQAKAIGIDF
>NC_010161.1|WP_012231625.1|1180463_1180769_-|hypothetical-protein
MQKKLPKSYMTDAEREELRAGGLPQNSIYMVEAEAASKANDSKTTWEWLAMAEYPAHALLHLRHQRGAQFIRDMGFSTKNADEEYGPDWLDKGVVIGGHHF
>NC_010161.1|WP_158305290.1|1181231_1181381_-|hypothetical-protein
MMCSFKNARGITHALRGGWHGRYGLAHCPAHDDRLLSLNKLAYLINYAH
>NC_010161.1|WP_007347430.1|1181478_1181679_-|DNA-binding-protein
MTENDILLTDRESAKLLHMSVSTFRRHVTNGSLPKPLKFGFLSRWLQSDLLNVIEQAKQQRYNDVA

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Crispr_ID: NC_010161_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010161_2

1340899-1341024

Orphan

Consensus_repeat	Method
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010161_2

>merge|NC_010161|2|1340899-1341024|CRISPRCasFinder
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAAAAGCCTTCTTTTGGCAAAGGGACAACTTGTCCCTTTGCCACTTTGTCTCCTTCACACCCAGTTTCATGATGCTCTGAA

>NC_010161|2|2|1340899-1341024|CRISPRCasFinder
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAA	AAGCCTTCTTTTGGCAAAGGGACAACTTGT
CCCTTTGCCACTTTGTCTCCTTCACACCCAGTTTCATGATGCTCTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010161.1\|WP_012231818.1\|1333171_1333513_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231790.1\|1343710_1344532_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_010161.1\|WP_012231822.1\|1334871_1335489_-\|regulatory-protein-GemA	unknown	unknown	gnl\|CDD\|377635
NC_010161.1\|WP_012231791.1\|1344674_1345658_-\|phage-late-control-protein	unknown	unknown	gnl\|CDD\|222877
NC_010161.1\|WP_012231820.1\|1333789_1334371_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225720
NC_010161.1\|WP_012231825.1\|1336385_1336655_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_169309789.1\|1341860_1341998_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231827.1\|1338040_1340011_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|367246
NC_010161.1\|WP_012231830.1\|1341478_1341877_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_038473706.1\|1342074_1342368_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372675
NC_010161.1\|WP_012231795.1\|1349003_1349417_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231832.1\|1342520_1343051_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_010161.1\|WP_012231823.1\|1335499_1336123_-\|DUF3164-family-protein	unknown	unknown	gnl\|CDD\|371491
NC_010161.1\|WP_012231821.1\|1334457_1334865_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379154
NC_010161.1\|WP_012231792.1\|1345657_1345912_-\|tail-protein-X	unknown	unknown	gnl\|CDD\|283209
NC_010161.1\|WP_012231828.1\|1340007_1340466_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231793.1\|1345908_1346379_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NC_010161.1\|WP_012231794.1\|1346535_1348872_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NC_010161.1\|WP_012231826.1\|1336651_1337683_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|370281
NC_010161.1\|WP_012231819.1\|1333505_1333793_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010161.1\|WP_012231790.1\|1343710_1344532_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.06952e-32
NC_010161.1\|WP_038473706.1\|1342074_1342368_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	7.21442e-27
NC_010161.1\|WP_012231791.1\|1344674_1345658_-\|phage-late-control-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.7796e-63
NC_010161.1\|WP_012231820.1\|1333789_1334371_-\|peptidoglycan-binding-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	2.25079e-33
NC_010161.1\|WP_012231827.1\|1338040_1340011_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|367246	pfam02914, DDE_2, Bacteriophage Mu transposase.	1.01229e-29
NC_010161.1\|WP_012231822.1\|1334871_1335489_-\|regulatory-protein-GemA	gnl\|CDD\|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	7.6531e-38
NC_010161.1\|WP_012231832.1\|1342520_1343051_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.43804e-05
NC_010161.1\|WP_012231823.1\|1335499_1336123_-\|DUF3164-family-protein	gnl\|CDD\|371491	pfam11363, DUF3164, Protein of unknown function (DUF3164). This family of proteins has no known function.	4.10598e-89
NC_010161.1\|WP_012231821.1\|1334457_1334865_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	2.15383e-05
NC_010161.1\|WP_012231793.1\|1345908_1346379_-\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	2.89808e-22
NC_010161.1\|WP_012231794.1\|1346535_1348872_-\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	1.14846e-44
NC_010161.1\|WP_012231826.1\|1336651_1337683_-\|AAA-family-ATPase	gnl\|CDD\|370281	pfam09077, Phage-MuB_C, Mu B transposition protein, C terminal. The C terminal domain of the B transposition protein from Bacteriophage Mu comprises four alpha-helices arranged in a loosely packed bundle, where helix alpha1 runs parallel to alpha3, and anti-parallel to helices alpha2 and alpha4. The domain allows for non-specific binding of Mu to double-stranded DNA, allowing for integration into the bacterial genome, and mediates dimerization of the protein.	9.73235e-20
NC_010161.1\|WP_012231792.1\|1345657_1345912_-\|tail-protein-X	gnl\|CDD\|283209	pfam05489, Phage_tail_X, Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	5.31747e-09

>NC_010161.1|WP_012231828.1|1340007_1340466_-|hypothetical-protein
MKTRGSHQLDFFQRPVFPCREPVAQIDLERFRSRIKRAMARALRECRYERSEVAERMAHYLGIGCLSKASLDAYVAESKQVDISLPRFKAFVRATGAFWLWDEVVSEDGLLLLQGDEARLAEIARLQQEQREIAARLKAMRATPVRIKRGQP
>NC_010161.1|WP_012231827.1|1338040_1340011_-|Mu-transposase-C-terminal-domain-containing-protein
MKEWFSIAELAKAALPGLPKSKGGLRKILATTWRHQSELTRKVKGVSRPVVEVHISLLPEVARAALLVRSGGGCVKESDQKTSVWARYEGLSKVHKRRCEERLKALCSMEDLLQAGMGVHDAASLCAVQFGVSRMSLFNWRQMVEGYERTDWLAALAPCYGEERFSQWAECHEEAWEVLCSDYLRSSRPAFSACYRRMVLVAREKGWEPIPSERALRRRFKAQVSKAVVVLAREGEEKAKKLYPAQRRDRSSLHALQAVNMDGHKLDVFVRVPWSLKPVRLYLIAIQDLYSGKILSWRLSDAETWEIVRLVIGDMVEAYGIPERMTLDNGRAFTSKWISGGVQNRFRFKIKADEPQGLLTSLGIQLQWTTPYSGQSKPIERAWRDLAEAISKHPFCAGAYTGNKPDAKPEDYGKRAIEFEAFKAHVGAQIVAHNAQAGRKALTCAGRSFDETFAESLTAEGTIIRQATAAQRALWLLTSEALRTQKGTGEIHFYGNRYWARALNEYAGKKVIVRFDPDYLHQDLRVYDLNNRLLCMAECLADVGFYDQQAARLNGRLRKEYVRAVKAEKQLAAKLAPDHLADVYGRLEKKDDGSKSKLVVKPKVSRLMPNHAGNLAVKVQDDEALEPQEFSQHLHKALRRFSASDEGREVIKFPKR
>NC_010161.1|WP_012231826.1|1336651_1337683_-|AAA-family-ATPase
MKYAINATVEKNPWARPKKQPDGAAQNRNSDDIALWNTLVDSVRALAQMNDWTKAEVARRIGMPDGTFSQWYAGSYAGQLGKQNAKVHQWVEALKETAGFLEKIPEKPAFQKNRIACEIIDTLTLAQSTGDMVMITLDAGNGKTETCRHYRATRPHVYLVTASPHTRSVHGILNDMAAELEVVEYNPTRLTRAIGKRLERVGGGTLLIVDEAQNLTDEAINQLRHFVDINGTGLALVGNDEISGRLVHRQNGPSYAQIKSRLAMHLKRRKPYSEDIAARIHDWGIEDAGAIKFLTGIGLKAGALRQIDKTMMLARMAALGDGCEVTLKHVKAAWKNRDVEELA
>NC_010161.1|WP_012231825.1|1336385_1336655_-|hypothetical-protein
MISLCDKELSDTLVGLYDDYQCGFDIGEKLKLCVDLALLLELELSVHRLGEADAVLEGQVAEVLAECDSSDRDEDKSNRVIYMDFGGSK
>NC_010161.1|WP_012231823.1|1335499_1336123_-|DUF3164-family-protein
MNPQIELEGTRYMKDAKGALVPVNLIRPADLLEDETVRKIMGFAKELSARIARFNNHTIADLSDFDSLLAQEYGVERRGKKGNCTYTSFDGLQRIKVQVQESVDFGPQLQIAKSLLDECLNEWSADARPEIRAIITRAFNTDKEGKVNRGEIFMLLRLDIDDPRWKEAMRAIREAIRVTTSKEYVRFYERDTLESAWRAVTIDLAKT
>NC_010161.1|WP_012231822.1|1334871_1335489_-|regulatory-protein-GemA
MSLAVLHMGKRALGLDDETYRALLYRLTGKQSAKDLNFSEKHLVIAEMKAFGFKPNGKRLEGKYAKKLQALWIAGWNLGIIRDRSDKALLAFVKRQTGIDHIRFLRDSDDACRAIEALKGWLQREGGVDWRGKNREDSWRKKPSISILCAQWKCLNPDAMFELGAFHQSVMALSGKALGEMSGGDFREVMNVWGRKIRKGVKSEG
>NC_010161.1|WP_012231821.1|1334457_1334865_-|helix-turn-helix-domain-containing-protein
MQEEIYSDFPALLREIADVAGSEAAWNMMRAFGGREVYIPGRLENADWLIEIVGFEEAEQLINHFCFNGSGVRLLIPLGRDAERRQKMMQALQKGWSVDAAAAVSGMHVRTAYRLKKRISSKEPQGLLFPEFYEY
>NC_010161.1|WP_012231820.1|1333789_1334371_-|peptidoglycan-binding-protein
MISIDASFLHQLAPKLTHHARQDFIIVEMARVLPKALSYGELTTHLRIAHFLSQCAHESDGFFTLREYASGRAYEGRRDLGNVNPGDGVHFKGRGLIQLTGRNNYRRFTKFWRLIDEQAVDCEAFPEVLEKFPAALWSAVWFWQMKGLNKLADRDDVVGITKAINGGRNGLVHRLTYLNRAKKLLGIGGEVEA
>NC_010161.1|WP_012231819.1|1333505_1333793_-|hypothetical-protein
MKPSYRGSKRYLWWSFWFAWGVIFLLIAGGLWGAPRIVDMAAISIPSMVAIIVGNLGVHRGFGSVDFSNRKHSHKQHSSVYDEVEITGWSDKRHV
>NC_010161.1|WP_012231818.1|1333171_1333513_-|hypothetical-protein
MFSPLSKLSLGLLFWGGVMLAAFGFMKAQVLKAEKARDAYWRLEIAKVSLQARLEQERQREAAQKAGLQAQAVISSLEQKLTKMEEINAVLPTVPSGCLGLERVRLLNTQAKG
>NC_010161.1|WP_012231830.1|1341478_1341877_-|hypothetical-protein
MVAAYNLWTPDVRRDIVNPYSEVERLQIMLSCSFKAVSGGFRHLPIRYIIAPPHGLFDAALARQIAIHILHYQFEVPRRRIVAIQERQRTSISLSLQVINRRLEEPVFAKAYRRWAGRAMDLFLREMEKAAA
>NC_010161.1|WP_169309789.1|1341860_1341998_-|hypothetical-protein
MSKDQYEIGKINCIALHHGAADWMGCFLGLAGQVFFIGGGYGCCL
>NC_010161.1|WP_038473706.1|1342074_1342368_-|helix-turn-helix-domain-containing-protein
MTTTQKWDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRPNEKAERAIADFIGLPVEQVFSDRYPKSRRRIFKAAKHANTDSRTQSALRGNAA
>NC_010161.1|WP_012231832.1|1342520_1343051_+|helix-turn-helix-transcriptional-regulator
MARPEKEPKTELAQRLREIRRVLGNEERGVFAQRLNLQRTTLANYETGAHEPTSSAINAYHRVYNINPHWLVTGEGEMFSDMEKAKAAGFKPQTIPAGLMKKLGRIAYTTYRDEKIKLPPENIAELAAELCIKLQELVQNINDMEEVEATFPLLKIHLKRQIEAEKEHSKATQNSA
>NC_010161.1|WP_012231790.1|1343710_1344532_-|DNA-adenine-methylase
MDILHKEKLKSVEPISPAAAYIGGKRRLAKTIVKIIEDIPHSIYAEPFVGMGGIFFRRKLIPSTEIINDFSGDVVNFFRVLQRHYHPFIELLAFQISSRETFERLQTQNPETLTDLERALRFLYLQRLSFSGKVAERTFRVETDRCARFNPFKLEGILKLIYRRLARVIIEHLDWSDFIVRYDRPNTLFYLDPPYFGVEDYYGKDLFKREDYQTMSMLLAQLKGKFLLSLNDVPEIRKTFSQFHIKEVRTIYSCNLSNNAIPAKELIITNCDI
>NC_010161.1|WP_012231791.1|1344674_1345658_-|phage-late-control-protein
MRTHPFIEVRVGENLVHEVFYQRLLTATITDHVGNEADTFEAEFDDSGNDLEIPSSNSALHVTFGYQNSIRAFMGRFVVESVVSIGGSDGEILRLCGKSASMRKELKEQASEHFDHKTIAEIVEALAKRHGYQAKVSPQFTKQTLPYVVRTDQSAVDFLTRLADRMRARFLIKDHKFLFLSGDNLPALDIHKHDCSSWEFTLEPRTQYGTIETSYFDRAKGQQCQVKHQTGFTGPVRRLRSCYPSQEEAQAAAASESDRLCRAVGSGSLTLAGRPEIMADQPLLLQGFRKEINGSWKAATVTHRYEKQSGYTTEITFEAPNQGKEQK
>NC_010161.1|WP_012231792.1|1345657_1345912_-|tail-protein-X
MKIPEKHLVVELEDMSLDLICFQHAMAVLGDRSQVGAIKGYCEATLQANPGIAGYGALLPRGLKVILPEFLSCEKNSVVKRLWD
>NC_010161.1|WP_012231793.1|1345908_1346379_-|phage-tail-protein
MRDPLLMLGPHLFYVDWLNFQSFEEEFSASWVCLERFGEAPGLQFTGYGNDPKTIHGVLFPEEFGDRVAIDAITRTIRAAKPVQMIRWMSDNGYSAILHGSVVITSVTKDHDYISRSGQSGRIRYAISLLPFFDGGKPQGQYQEGYDQYSQGGETP
>NC_010161.1|WP_012231794.1|1346535_1348872_-|phage-tail-tape-measure-protein
MDVSLVVRFVNHLQEGIASAKRDLRAFSLDVAHFQNQTRKHFKGWFDPEHLKEATAHAENAFIHARGRMVGAIAQTATLIAPLYKAMQFDQSMKGLEKVLDAPLDRLKELRRFALETSTKIPLAAREVLELMTSASQAGIGEQDLEAFSIYAAKAAVAFDMTGDQIGERFAKLRNVFKLNQEGIEDLGDAINHLSNHMAAKASEVSDFTNRATGAATMFKLTARETAAFGTAMISAGIVPESAARGFNTMSARIQAGGKHIEDAFSNIGLSRQKFMEDLEKDATGTLVRFFNVLGKSEQGMRSLIAIAGREFTGDFAKLVGNPQLLGQALDYVKDPQVFKGSVEQEADKQATGAMRQFELLQNRIVALGITIGEVLLPPLNSLMESVGGFVNGLMAWANEHPVLTGVIIKTIAALMAFNIALRVVRFTMAGTRLGLLQLMGSFIKMRVVSRTLKASWRGLVASGRSLGLMAAGLGGSALRLLRPMTLLVGALRGIAVSGAAFSASFGFIGTVIEVVGAAIASVVGGIFTPIGALIAAVVAVILASGFALWKYWDRFSSFVKGFARGITRAWGQAFEAVMRFFGADTATITKWKNIIAAAFDLSSHWQKFKQGLSSVSQSFAGLWEGVKQSFSNFWGWLKRFFVREKLTESAKAGMEQAGEDLASWIVDGFMSSISQLMDYCKSLPHRIKGWIGSIDVREFLPSFLGGKTSIQPIVQFAGASPVNSSAREPRDKDRSPITHNQNVTVHVNGARDPMATGRAVAHALQRARANALHGGTE
>NC_010161.1|WP_012231795.1|1349003_1349417_-|hypothetical-protein
MTSLQTSLDVELQVPLVYKESDGKELTRHKLTFYRPNFKQARQLAVLIGPQLAKLVLLGLEEDKTTLSNDVLILKVCEALLTHEAMEGIAVLLADMSHESVELINRLDVIDIMAVLKAFFAFFPTRQSSLPDNLEQN

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Crispr_ID: NC_010161_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010161_3

1518276-1518401

Orphan

Consensus_repeat	Method
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010161_3

>merge|NC_010161|3|1518276-1518401|CRISPRCasFinder
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAAAAGCCTTCTTTTGGCAAAGGGACAACTTGTCCCTTTGCCACTTTGTCTCCTTCACACCCAGTTTCATGATGCTCTGAA

>NC_010161|3|3|1518276-1518401|CRISPRCasFinder
CCCTTTGCCACTTTGTCTCCTTCACATCCAGTTTCATGATGCTCTGAA	AAGCCTTCTTTTGGCAAAGGGACAACTTGT
CCCTTTGCCACTTTGTCTCCTTCACACCCAGTTTCATGATGCTCTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010161.1\|WP_012231934.1\|1528316_1528823_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_010161.1\|WP_012231929.1\|1524076_1525195_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_010161.1\|WP_038473706.1\|1519451_1519745_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372675
NC_010161.1\|WP_012231820.1\|1511166_1511748_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225720
NC_010161.1\|WP_012231823.1\|1512876_1513500_-\|DUF3164-family-protein	unknown	unknown	gnl\|CDD\|371491
NC_010161.1\|WP_012231830.1\|1518855_1519254_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231933.1\|1527711_1528314_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NC_010161.1\|WP_038473713.1\|1528847_1531631_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_010161.1\|WP_012231819.1\|1510882_1511170_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231828.1\|1517384_1517843_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231818.1\|1510548_1510890_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231928.1\|1521685_1522885_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_010161.1\|WP_012231932.1\|1527180_1527693_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NC_010161.1\|WP_012231832.1\|1519897_1520428_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_010161.1\|WP_012231827.1\|1515417_1517388_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|367246
NC_010161.1\|WP_012231825.1\|1513762_1514032_-\|hypothetical-protein	unknown	unknown	unknown
NC_010161.1\|WP_012231821.1\|1511834_1512242_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379154
NC_010161.1\|WP_012231822.1\|1512248_1512866_-\|regulatory-protein-GemA	unknown	unknown	gnl\|CDD\|377635
NC_010161.1\|WP_012231826.1\|1514028_1515060_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|370281
NC_010161.1\|WP_169309789.1\|1519237_1519375_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010161.1\|WP_012231934.1\|1528316_1528823_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.42511e-81
NC_010161.1\|WP_012231929.1\|1524076_1525195_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_010161.1\|WP_038473706.1\|1519451_1519745_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	7.21442e-27
NC_010161.1\|WP_012231820.1\|1511166_1511748_-\|peptidoglycan-binding-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	2.25079e-33
NC_010161.1\|WP_012231823.1\|1512876_1513500_-\|DUF3164-family-protein	gnl\|CDD\|371491	pfam11363, DUF3164, Protein of unknown function (DUF3164). This family of proteins has no known function.	4.10598e-89
NC_010161.1\|WP_012231932.1\|1527180_1527693_-\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	3.02443e-70
NC_010161.1\|WP_012231821.1\|1511834_1512242_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	2.15383e-05
NC_010161.1\|WP_012231826.1\|1514028_1515060_-\|AAA-family-ATPase	gnl\|CDD\|370281	pfam09077, Phage-MuB_C, Mu B transposition protein, C terminal. The C terminal domain of the B transposition protein from Bacteriophage Mu comprises four alpha-helices arranged in a loosely packed bundle, where helix alpha1 runs parallel to alpha3, and anti-parallel to helices alpha2 and alpha4. The domain allows for non-specific binding of Mu to double-stranded DNA, allowing for integration into the bacterial genome, and mediates dimerization of the protein.	9.73235e-20
NC_010161.1\|WP_012231933.1\|1527711_1528314_-\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	2.98936e-59
NC_010161.1\|WP_012231832.1\|1519897_1520428_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.43804e-05
NC_010161.1\|WP_012231827.1\|1515417_1517388_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|367246	pfam02914, DDE_2, Bacteriophage Mu transposase.	1.01229e-29
NC_010161.1\|WP_038473713.1\|1528847_1531631_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_010161.1\|WP_012231822.1\|1512248_1512866_-\|regulatory-protein-GemA	gnl\|CDD\|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	7.6531e-38
NC_010161.1\|WP_012231928.1\|1521685_1522885_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.09289e-79

>NC_010161.1|WP_012231828.1|1517384_1517843_-|hypothetical-protein
MKTRGSHQLDFFQRPVFPCREPVAQIDLERFRSRIKRAMARALRECRYERSEVAERMAHYLGIGCLSKASLDAYVAESKQVDISLPRFKAFVRATGAFWLWDEVVSEDGLLLLQGDEARLAEIARLQQEQREIAARLKAMRATPVRIKRGQP
>NC_010161.1|WP_012231827.1|1515417_1517388_-|Mu-transposase-C-terminal-domain-containing-protein
MKEWFSIAELAKAALPGLPKSKGGLRKILATTWRHQSELTRKVKGVSRPVVEVHISLLPEVARAALLVRSGGGCVKESDQKTSVWARYEGLSKVHKRRCEERLKALCSMEDLLQAGMGVHDAASLCAVQFGVSRMSLFNWRQMVEGYERTDWLAALAPCYGEERFSQWAECHEEAWEVLCSDYLRSSRPAFSACYRRMVLVAREKGWEPIPSERALRRRFKAQVSKAVVVLAREGEEKAKKLYPAQRRDRSSLHALQAVNMDGHKLDVFVRVPWSLKPVRLYLIAIQDLYSGKILSWRLSDAETWEIVRLVIGDMVEAYGIPERMTLDNGRAFTSKWISGGVQNRFRFKIKADEPQGLLTSLGIQLQWTTPYSGQSKPIERAWRDLAEAISKHPFCAGAYTGNKPDAKPEDYGKRAIEFEAFKAHVGAQIVAHNAQAGRKALTCAGRSFDETFAESLTAEGTIIRQATAAQRALWLLTSEALRTQKGTGEIHFYGNRYWARALNEYAGKKVIVRFDPDYLHQDLRVYDLNNRLLCMAECLADVGFYDQQAARLNGRLRKEYVRAVKAEKQLAAKLAPDHLADVYGRLEKKDDGSKSKLVVKPKVSRLMPNHAGNLAVKVQDDEALEPQEFSQHLHKALRRFSASDEGREVIKFPKR
>NC_010161.1|WP_012231826.1|1514028_1515060_-|AAA-family-ATPase
MKYAINATVEKNPWARPKKQPDGAAQNRNSDDIALWNTLVDSVRALAQMNDWTKAEVARRIGMPDGTFSQWYAGSYAGQLGKQNAKVHQWVEALKETAGFLEKIPEKPAFQKNRIACEIIDTLTLAQSTGDMVMITLDAGNGKTETCRHYRATRPHVYLVTASPHTRSVHGILNDMAAELEVVEYNPTRLTRAIGKRLERVGGGTLLIVDEAQNLTDEAINQLRHFVDINGTGLALVGNDEISGRLVHRQNGPSYAQIKSRLAMHLKRRKPYSEDIAARIHDWGIEDAGAIKFLTGIGLKAGALRQIDKTMMLARMAALGDGCEVTLKHVKAAWKNRDVEELA
>NC_010161.1|WP_012231825.1|1513762_1514032_-|hypothetical-protein
MISLCDKELSDTLVGLYDDYQCGFDIGEKLKLCVDLALLLELELSVHRLGEADAVLEGQVAEVLAECDSSDRDEDKSNRVIYMDFGGSK
>NC_010161.1|WP_012231823.1|1512876_1513500_-|DUF3164-family-protein
MNPQIELEGTRYMKDAKGALVPVNLIRPADLLEDETVRKIMGFAKELSARIARFNNHTIADLSDFDSLLAQEYGVERRGKKGNCTYTSFDGLQRIKVQVQESVDFGPQLQIAKSLLDECLNEWSADARPEIRAIITRAFNTDKEGKVNRGEIFMLLRLDIDDPRWKEAMRAIREAIRVTTSKEYVRFYERDTLESAWRAVTIDLAKT
>NC_010161.1|WP_012231822.1|1512248_1512866_-|regulatory-protein-GemA
MSLAVLHMGKRALGLDDETYRALLYRLTGKQSAKDLNFSEKHLVIAEMKAFGFKPNGKRLEGKYAKKLQALWIAGWNLGIIRDRSDKALLAFVKRQTGIDHIRFLRDSDDACRAIEALKGWLQREGGVDWRGKNREDSWRKKPSISILCAQWKCLNPDAMFELGAFHQSVMALSGKALGEMSGGDFREVMNVWGRKIRKGVKSEG
>NC_010161.1|WP_012231821.1|1511834_1512242_-|helix-turn-helix-domain-containing-protein
MQEEIYSDFPALLREIADVAGSEAAWNMMRAFGGREVYIPGRLENADWLIEIVGFEEAEQLINHFCFNGSGVRLLIPLGRDAERRQKMMQALQKGWSVDAAAAVSGMHVRTAYRLKKRISSKEPQGLLFPEFYEY
>NC_010161.1|WP_012231820.1|1511166_1511748_-|peptidoglycan-binding-protein
MISIDASFLHQLAPKLTHHARQDFIIVEMARVLPKALSYGELTTHLRIAHFLSQCAHESDGFFTLREYASGRAYEGRRDLGNVNPGDGVHFKGRGLIQLTGRNNYRRFTKFWRLIDEQAVDCEAFPEVLEKFPAALWSAVWFWQMKGLNKLADRDDVVGITKAINGGRNGLVHRLTYLNRAKKLLGIGGEVEA
>NC_010161.1|WP_012231819.1|1510882_1511170_-|hypothetical-protein
MKPSYRGSKRYLWWSFWFAWGVIFLLIAGGLWGAPRIVDMAAISIPSMVAIIVGNLGVHRGFGSVDFSNRKHSHKQHSSVYDEVEITGWSDKRHV
>NC_010161.1|WP_012231818.1|1510548_1510890_-|hypothetical-protein
MFSPLSKLSLGLLFWGGVMLAAFGFMKAQVLKAEKARDAYWRLEIAKVSLQARLEQERQREAAQKAGLQAQAVISSLEQKLTKMEEINAVLPTVPSGCLGLERVRLLNTQAKG
>NC_010161.1|WP_012231830.1|1518855_1519254_-|hypothetical-protein
MVAAYNLWTPDVRRDIVNPYSEVERLQIMLSCSFKAVSGGFRHLPIRYIIAPPHGLFDAALARQIAIHILHYQFEVPRRRIVAIQERQRTSISLSLQVINRRLEEPVFAKAYRRWAGRAMDLFLREMEKAAA
>NC_010161.1|WP_169309789.1|1519237_1519375_-|hypothetical-protein
MSKDQYEIGKINCIALHHGAADWMGCFLGLAGQVFFIGGGYGCCL
>NC_010161.1|WP_038473706.1|1519451_1519745_-|helix-turn-helix-domain-containing-protein
MTTTQKWDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRPNEKAERAIADFIGLPVEQVFSDRYPKSRRRIFKAAKHANTDSRTQSALRGNAA
>NC_010161.1|WP_012231832.1|1519897_1520428_+|helix-turn-helix-transcriptional-regulator
MARPEKEPKTELAQRLREIRRVLGNEERGVFAQRLNLQRTTLANYETGAHEPTSSAINAYHRVYNINPHWLVTGEGEMFSDMEKAKAAGFKPQTIPAGLMKKLGRIAYTTYRDEKIKLPPENIAELAAELCIKLQELVQNINDMEEVEATFPLLKIHLKRQIEAEKEHSKATQNSA
>NC_010161.1|WP_012231928.1|1521685_1522885_-|MFS-transporter
MKDFHKQNVFALGIDSRIRRLAILALAVGSFAIGTAEFVAMGLLPEMARSSYVDIPTAGQYISAYALGVVIGAPLLAVATAQISRKTVLIGLMFFYALANIASAFFSDFSILVALRFLSGLPHGIYFGLAAMVAASMVEMNERSKAVGSVMLGLTIATVLGAPGATWIGQLIGWQIAFILVGMIALLCCLLIWNFLPCDSSSPRTSPLREMGALKQKQVWLLLAMVSVGASGLFSVFTYIKSTLMHISGISLEWVPLIMPLVGLGMVGGNLLGPKLAIKIGISPMIFFSMLWSVFVFFLFFFLSYAPLTAAIGCFFVGTSFAAMPSIQTKIMDVALQGQILAGALMQSAFNIANALGAEAGALVLKLGYSYEYTAVLGSVLTLCGLMIFCISWSMEKHA
>NC_010161.1|WP_012231929.1|1524076_1525195_-|tRNA-guanosine(34)-transglycosylase-Tgt
MIKTFHYRKIAQDGYARRGEIITGRGCVRTPAFMPVGTAGTVKAMYMDQIRELGADIILGNTYHLMLRPGAERVARLGGLHEFSRWNGPILTDSGGFQVMSLAGIRKITEQGVIFRSYINGAYYEMSPERSIEIQGLLDADVQMQLDQCIALPATEKEIEEAMELSLRWAQRCKTAFGNQPDKALFGIVQGGDNMKLRERSAQALKEMNLKGYAIGGLAVGEPQSVMTAVLDVTCPILPEDKPRYLMGVGTPDDILQSVARGVDMFDCVMPTRAGRHGLAFTRFGRINLRNARYAEDPHPLDPQSLCPAANDYSCAYLHHLIKSDESLGGMLLTWNNLFYYQQLMQGIRDAIEEGCYADFCAETRALWAQGR
>NC_010161.1|WP_012231932.1|1527180_1527693_-|peptidylprolyl-isomerase
MAENKNLENTLVLETTKGRVVIELFADLAPCHVARIKELVREGAYDNVIFHRVIDGFMAQTGDVQFGKKDSEEFNLSRAGMGGSEKPNLTAEFSNLSHKRGTVSMARSQNPNSANSQFFICFADAPWLDRQYSIWGQVVEGMENVDKIKRGEPVADPDTITKAVIAADEK
>NC_010161.1|WP_012231933.1|1527711_1528314_-|peptidylprolyl-isomerase
MYRRIFAVLMCVFCFFSLHAVADNSSSASPTSDASLLVLSLKDGDVIIRLRPDLAPKHVAQIKKLTEEGAYNNVVFHRVIPGFMAQTGDVKFGKKGSRDFDLKRVGMGGSNYPNIPAEFSKQPFKRGTVGMARSQDPDSANSQFFICFDDAAFLNGQYTVVGEVIKGMDVVDKIKKGTASNNGSVTNPDVIHAATLQIER
>NC_010161.1|WP_012231934.1|1528316_1528823_-|pantetheine-phosphate-adenylyltransferase
MKIAFYAGSFDPLTNGHLDVLKGCFVLADKVVVAIGLQANKKTLFSFEERVDFITQVGKDLLGADSNRLQVLSFNNLLIEKAREVGASFLIRGLRDGTDLDYEMQMAGMNGIMAPELQTVFLPASVSGRAITSTLVRQIASMGGDVTPFVPSNIAQALHSKFQSVRGE
>NC_010161.1|WP_038473713.1|1528847_1531631_-|DNA-gyrase-subunit-A
MTDLTPQPERDVLSGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAKVDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILASRVRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGDKVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDEGEKHSDIVNMSEEE

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Crispr_ID: NC_010161_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010161_4

2370116-2370207

Orphan

Consensus_repeat	Method
GTTCCAGCCAAAGCACCAAATGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010161_4

>merge|NC_010161|4|2370116-2370207|CRISPRCasFinder
GTTCCAGCCAAAGCACCAAATGCTGCACCGGTAAGCGCTGCTCCAGCAGTGCTTCCACCAATAGCAGTTCCAGCCAAAGCACCAATTGCTGC

>NC_010161|4|4|2370116-2370207|CRISPRCasFinder
GTTCCAGCCAAAGCACCAAATGCTGC	ACCGGTAAGCGCTGCTCCAGCAGTGCTTCCACCAATAGCA
GTTCCAGCCAAAGCACCAATTGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010161.1\|WP_081458171.1\|2378615_2378777_+\|integrase	unknown	unknown	unknown
NC_010161.1\|WP_012232463.1\|2363512_2364949_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NC_010161.1\|WP_012232461.1\|2357903_2359910_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NC_010161.1\|WP_012232475.1\|2381194_2382100_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_010161.1\|WP_012232471.1\|2376326_2376668_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NC_010161.1\|WP_038474306.1\|2353773_2354805_-\|fructose-bisphosphate-aldolase-class-I	unknown	unknown	gnl\|CDD\|380231
NC_010161.1\|WP_012232472.1\|2376973_2377558_+\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NC_010161.1\|WP_012232468.1\|2371196_2372795_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227123
NC_010161.1\|WP_005774573.1\|2360243_2360519_+\|DUF4164-domain-containing-protein	unknown	unknown	gnl\|CDD\|372702
NC_010161.1\|WP_012232460.1\|2356698_2357706_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_010161.1\|WP_012232462.1\|2360531_2360915_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|225571
NC_010161.1\|WP_049776898.1\|2380200_2380392_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|223410
NC_010161.1\|WP_012232465.1\|2368063_2369926_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_010161.1\|WP_012232464.1\|2364945_2365473_-\|DUF1036-domain-containing-protein	unknown	unknown	gnl\|CDD\|227767
NC_010161.1\|WP_012232469.1\|2373207_2374119_-\|RNA-polymerase-factor-sigma-32	unknown	unknown	gnl\|CDD\|236033
NC_010161.1\|WP_012232459.1\|2354920_2356114_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_010161.1\|WP_005774555.1\|2380589_2380769_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|223410
NC_010161.1\|WP_012232467.1\|2370415_2371051_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NC_010161.1\|WP_005774567.1\|2365689_2365950_+\|DUF2312-domain-containing-protein	unknown	unknown	gnl\|CDD\|237474
NC_010161.1\|WP_038474323.1\|2374718_2376305_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010161.1\|WP_012232463.1\|2363512_2364949_-\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NC_010161.1\|WP_012232461.1\|2357903_2359910_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_010161.1\|WP_012232475.1\|2381194_2382100_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	5.1969e-84
NC_010161.1\|WP_012232471.1\|2376326_2376668_+\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	2.75219e-19
NC_010161.1\|WP_038474306.1\|2353773_2354805_-\|fructose-bisphosphate-aldolase-class-I	gnl\|CDD\|380231	NF033379, FrucBisAld_I, fructose-bisphosphate aldolase class I. This family consists of fructose-bisphosphate aldolase class I. All members of the seed alignment are from prokaryotes, although class I is the common form in plants and animals. The common form in prokaryotes is class II.	0
NC_010161.1\|WP_012232472.1\|2376973_2377558_+\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	1.63414e-67
NC_010161.1\|WP_012232468.1\|2371196_2372795_+\|M48-family-metalloprotease	gnl\|CDD\|227123	COG4784, COG4784, Putative Zn-dependent protease [General function prediction only].	1.3744e-159
NC_010161.1\|WP_005774573.1\|2360243_2360519_+\|DUF4164-domain-containing-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.43891e-13
NC_010161.1\|WP_012232460.1\|2356698_2357706_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	5.45201e-179
NC_010161.1\|WP_012232462.1\|2360531_2360915_+\|cell-division-protein-ZapA	gnl\|CDD\|225571	COG3027, zapA, Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning].	2.92635e-19
NC_010161.1\|WP_012232465.1\|2368063_2369926_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	4.79646e-163
NC_010161.1\|WP_012232464.1\|2364945_2365473_-\|DUF1036-domain-containing-protein	gnl\|CDD\|227767	COG5480, COG5480, Predicted integral membrane protein [Function unknown].	1.27434e-53
NC_010161.1\|WP_012232469.1\|2373207_2374119_-\|RNA-polymerase-factor-sigma-32	gnl\|CDD\|236033	PRK07500, rpoH2, RNA polymerase factor sigma-32; Reviewed.	6.43185e-173
NC_010161.1\|WP_012232459.1\|2354920_2356114_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_010161.1\|WP_005774555.1\|2380589_2380769_-\|50S-ribosomal-protein-L32	gnl\|CDD\|223410	COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal structure and biogenesis].	1.61988e-21
NC_010161.1\|WP_012232467.1\|2370415_2371051_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	6.90065e-62
NC_010161.1\|WP_005774567.1\|2365689_2365950_+\|DUF2312-domain-containing-protein	gnl\|CDD\|237474	PRK13694, PRK13694, hypothetical protein; Provisional.	7.35817e-36
NC_010161.1\|WP_049776898.1\|2380200_2380392_-\|50S-ribosomal-protein-L32	gnl\|CDD\|223410	COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal structure and biogenesis].	1.1108e-09

>NC_010161.1|WP_012232465.1|2368063_2369926_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MAVPLLRLDRIFLTFGTTPLLNQACLSVEQGARIALVGRNGCGKSTLLKIAAGILEPHGGEIFRHPRVTLRYVSQNPDCLGFEDINAYMEAELDETSDVQWINTLRTNLGFSGGEKLETLSGGEKRRVSLLRAIAAKPDILFLDEPTNHLDLPTIEWLEGVLSSLRSAIVVISHDRRFLENVTRSTVWLDRGTTKRLEKRFSEFESWRDKALQEEAIEQHKLGRQIAREEQWLRYGISARRKRNVRRLSELKDLRQRHQTYKGQPGSALLSAAKSHDSGQLVLEAKKISKSYGERVIVKDFSLRIQRGARIGLVGPNGIGKTTLLSVLIGKEAVDSGTVRHGYNLSMALLDQQRIVNEEETLAHYLTGGRGDTLVINGQERHVVSYMKDFLFLPEQARTPLKEFSGGERARLMLARLLSRPANFLILDEPTNDLDMETLDLLQEFIADFAGTVLLVSHDRDFLDRTVTHMLAPEGDGHWVLYAGGYSDMMAQNKQALRLQRKEIELSHRKASSKPHAGAFSKQISSTDPSLIAREKKTPRRLSYKQVYALEKLPEEIAVLQNEIKKIEQELSDPALYRRDKERFERLSTALEKKKNTCTQKQEEWLELEILREEMEACSR
>NC_010161.1|WP_005774567.1|2365689_2365950_+|DUF2312-domain-containing-protein
MNDTVTDQTHAISVNQLRSFIERIERLEEEKKTISDDIKDVYTELKGSGFDSKAVRSIIRLRKKEEHERMEEEAIIELYKNALGMN
>NC_010161.1|WP_012232464.1|2364945_2365473_-|DUF1036-domain-containing-protein
MVCFENLHYREIFLILKKQCWAFETRLKVFLLSILLLFPFSVCVKADFRVCNTTQQSVGIALGYRTFSGWVSEGWWVVPVTECKTLIEGPLASRFYYFYAEGAQKKGNWAGSVTMCVQDSQFTIQGVHDCFPRGYQKAEFQEIDTGNQTSWMVQLTDDSLLNNSVVPSFSGSSPP
>NC_010161.1|WP_012232463.1|2363512_2364949_-|pyruvate-kinase
MKRARKVKIIATLGPSSFSRLMIEKLFRAGADVFRLNMSHTDCDTMGDLVKSIREVEKIVQRPIGILVDLQGPKLRIGHFAKGQEDLCVGQSFTLDHRDVAGDARRVFFPHEDVFSALKPGDRLLIDDGRVELRAEVCDDHFVQCRVVAGTRISDRKGVSFPDTVLPFDSMTSKDKADLQALLQYPVDWVALSFIQRPEDIIAVRQLTKSKVSLMAKIEKPQALEHIEKIIEISDGIMIARGDLGVEMPLERIPALQMELIKACRLAGKPVVVATQMLESMITSPVPTRAEVSDVATAVYSGTDAVMLSAESASGRYPEEAVLMMDKIARQIEQDHTYAAQVGAQHPAPESTGTDAISLAARQIAETLALAAIVAYTASGTTGVRASRERPNRPIIALSPIVETARRLALVWGLHCVVSDDAKNLEDMVDRAAAIAFQEGFCQGGDRFLVTAGVPLGTPGATNLLRIASVSPDGTKGI
>NC_010161.1|WP_012232462.1|2360531_2360915_+|cell-division-protein-ZapA
METVSVTIDGKNYRMACNKGQERHLIALAAQLDQYITHLKKNFGEIGDHRLSVMAGIMIIDEMEEIKRENKKLQEDYNALLRLHNEKERTMEKIMRDTTQRIENLTNQLLKDDQYSTNIQEQEQEDF
>NC_010161.1|WP_005774573.1|2360243_2360519_+|DUF4164-domain-containing-protein
MNQETTVLQDALEHLEKALRTLEITIINRNAVIDKNNEWEEEIQRMNADRSHLAQALDKAEAQIERLESVNKEVSKRLIKAMETIRVVIDR
>NC_010161.1|WP_012232461.1|2357903_2359910_-|transketolase
MTNTLQQNQMANAIRFLAIDAIEKANSGHPGLPMGAADIATVLYTQFLAHDPKNPRWPNRDRFVLSAGHGSMLLYALLYLSGYEDICIEDLKDFRQLGAKLAGHPEYGHAAGIETTTGPLGQGLANAVGMALAERLQNARFGDLINHYTYVLVGDGCLMEGISQEAISLAGHLKLHKLIVLWDDNNISIDGEISLADSTDQCARFKASGWNTVKVDGHSQTAIAHAIEEAKNSDKPTLIACKTTIGFGAPNKAGTNKVHGSPLGVREIAETRIALGWEAEPFVIPADILDNWRLAGLNAAKRRQKWEEKLAALSVSERVEFERLMRGDLVGGFDGAVDAYKQKLVEECPVVATRKASEMALEVINEVVSETIGGSADLTGSNNTKSSQMKSISANDFSGRYLHYGIREHAMGAIMNGLALHGGFIPYGGTFLCFSDYMRPAMRLSSLMGLRVIYVMTHDSIGLGEDGPTHQPVEHLACLRAMPNHLVFRPADAMETVECWQLALKARGTPSTLALSRQNLPLLRQEYEEENLCMLGAYELLTASDEAQVTLFASGSELQIAVKAHAVLEEKGIPTRVVSVPCFELFSQQSCSYQRALIGDAPIKIAIEAAVAQGWDRFIGCDGVFIGMEGFGASGTIDDLYAHFGITWENVVATAEGELEKIEEEKTK
>NC_010161.1|WP_012232460.1|2356698_2357706_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVAINGFGRIGRNILRALIESGRKDIEVVAINDLGSVETNAHLLRYDSVHGRFPGDVKVVGDAIDVGSGLIKVCAERDPVQLPWKDLDIDIALECTGIFTACDKAKAHLDAGAKRVLVSAPSEGADLTVVYGVNHQSLNKEHRVVSNASCTTNCLAPVAQVLHNTVGIENGFMTTIHSYTGDQPVLDTMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIATAARGSLKGILDTTQEKLVSCDFNHNPHSAIFHNDQTKVIDGKLCRVLVWYDNEWGFSNRMSDTAVAFAKTI
>NC_010161.1|WP_012232459.1|2354920_2356114_-|phosphoglycerate-kinase
MVFRTLDDVDVLGKRVLVRVDFNVPMALGKVCDETRLVRHKETLVELQKRGAKLILLSHCGRPKGKIEPEFSLRPVVSVLEKIINQPVAFAPDCIGSTVQVAVEALQNGDVLLLENVRFYAGEEKNDCSFAGALAHNGDLYVNDAFSVSHRAHASVEGITRLLPSYAGRSLQGELQALEKGLGNPTRPVVALVGGAKVSSKLFVLNHLVEKVDTLVIGGGMANSFLAAQGIHVGKSLCEHTLMETVKKIIKKAQECHCTLLLPVDVVVGFRFEKDAPHRLYDIGDIPEEGMILDIGTRSIVHINSVIDKAATLVWNGPLGVFEMPPFDKGTIAVARHAAERSLTGRLVSIAGGGDTVFALNHADVANDFTYLSTAGGAFLEWMEGKVLPGILALMQP
>NC_010161.1|WP_038474306.1|2353773_2354805_-|fructose-bisphosphate-aldolase-class-I
MTERLEDIALSLVQAGKGILAADESTATIGKRFESIGVESNEDRRRAYREMLFSAKEAMQNAISGVILFDETIRQKASTGQMLTNLIRDAGALPGIKVDTGAKPLAAFPQETITEGLDGLRERLKDYYTLGARFAKWRAVIAINADTLPTRGAINQNAHALARYAALCQELNIVPIVEPEVLMDGPSCGHSIARCFEVTGAVLQTVFKELFEARVVLEGMILKPNMVIDGKDARKAGVEEVAEKTVCVLKQTVPSAVPGIAFLSGGQSDQEATAHLSAMNSLGALPWKLTFSYGRALQAAALKAWAGKDENIAIAQKAFHHRAQMNHLAALGQWTKSQEKVSA
>NC_010161.1|WP_012232467.1|2370415_2371051_-|thiamine-diphosphokinase
MTTFTILLNGDLSITDRLLNQIQNSRVIAADGGMRHAAALNVKPELWLGDFDSSDQTLIDKYNHISREVFPSDKDMTDSALACERALQNGAKKLILCGALGGERSDHSLSHMTQALMMAEKGISVLLTSGLEEGWPVLPKLASYDLPKGCLFSLIGFSDLKGLTLKGVKWPICDKNVSFGSSLTLSNRICGTFSCHLGSGKAILLASVPIP
>NC_010161.1|WP_012232468.1|2371196_2372795_+|M48-family-metalloprotease
MKFAKLHRRDDLHCNPNPTHAIAQRNFLFRSLPYKVTFISFMLLLSACHTHLSQNDRLSSSSSETTKHTNNHNIYVTLSALQHPRILQMYGGVYHNAKLERFLAKIIRKLTIASHHLHQSYFITILNSESVNAFALPNGSIYITRGMLALANDSSEVAAILAHEMAHIRANHGILRLQKEAQLKMANHMSPHLLSSMNKKLHPPLKNKQQLAQFSRNQELEADSLALEMLQQAGYDSFALPRFLQTMEAYSHLQNISGTQNAPLDFLTSHPTTPQRIRLAIEKARKISKDNHKIIDRDSFFTSIDGMTFGGSFDTGFLRGNQFIHPQWRIAFSVPNNFTIEHSAQTVWASGPDKIAIRFDVVPHPAGISVSDYLKSGWIIGLDSSSIRPLTIQGLPNQEFTRPGFTHQGYLGQSLLGAQARATHEQWQFDVVVILFNNYIFRFLTAAPYNSPNFAEIAQKTVQSFHPLSTSQLKKLKPLKIRVVRVKQGENIANLANKMQHTPDKEKLFRILNALSPTQALSAGTKVKIITE
>NC_010161.1|WP_012232469.1|2373207_2374119_-|RNA-polymerase-factor-sigma-32
MGNLSNAVYKSSKNYSDADKSLGRNMMRSAMKAPYLERQKEHDLALRWKDKRDDDAMHQIAAAHMRLVIAIANRFKRFKMPLGDLVQEGYVGLLEAAARFEPDREVRFSTYATWWIRASIQDYILRNWSIVRGGTSSSQKALFFNLRRLRAKLVQDDSALSKQDIFRTIAEKLGVSVRDVETMDFRFSSSDNSLSVSVSENSDSPVAKMDVLVDESPLPDALIEQVIDGQRRTQWLYDALQILNERELEIIRFRRLNEEGATLEVLGEKLGISKERVRQIEARALQKLRSALLTVHSEDAYDI
>NC_010161.1|WP_038474323.1|2374718_2376305_+|hypothetical-protein
MDSKIVQQNEILQDDILIEKHGRGKFEGFRFYANKNNTDQTTEEQCSIENEHLILAFSKRAIRFCACANGDFTLSSDGIVRWIGQPVGQLVATEDFFKPKLIVLADSQLIGESRDNVVKRLERFVTFHFETALKPLFDLRNADNLTDSTNSLALQLINSLGVIPRREVLDLVKNLAQESRAILRRLGIRFGAFHIYVAGMLKPVPVQAITLLWNLQNAGQNQTGLAEIFTALSAGRTSLSVDPTYNRQFYQLAGYRILGQRAVRIDILERLANLIRPALHWKQGSDPKPDGAYDGKSFFVTPAMMSILGANGNDMEEILKGLGYQSHSISNTVFEQNLLAHKASSLINGTTQEVPAAECVGSLWQTINTPKTAQEEQNTSSLNILSSSSRIEKHSHNTNHLPAAEPVGNFAKATPPKAEDKVVLLWYYKHQLHHHSQKRRDKSGHKWKNRPKSAVQKEGNANGNFPQEAPSQTKRSHKFHKSQDKRANYKPFQKEKRFNPDSPFAKLAVLRDQLSHHKNTHTLSSKEH
>NC_010161.1|WP_012232471.1|2376326_2376668_+|ferredoxin-family-protein
MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIVPDTEPGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGSGEE
>NC_010161.1|WP_012232472.1|2376973_2377558_+|CarD-family-transcriptional-regulator
MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVPIAKALSVGMRKLSAGDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVRDLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTEREETVENSKAVYAA
>NC_010161.1|WP_081458171.1|2378615_2378777_+|integrase
MDLMNALKCQELPQHPRAGKYNDGAGLLLHKRKDGSAILFHGGFIVYHSQAPP
>NC_010161.1|WP_049776898.1|2380200_2380392_-|50S-ribosomal-protein-L32
MRRLADALKALAYIEDKNSGELRCPHAIDLKTGMYRGRSVLVVKTLAFYLSFRSAACAVRLML
>NC_010161.1|WP_005774555.1|2380589_2380769_-|50S-ribosomal-protein-L32
MAVPKRKTSPAKRGMRRSADALKAPTYIEDKNSGELRRPHHIDLKTGMYRGRSVLVVKD
>NC_010161.1|WP_012232475.1|2381194_2382100_+|polyprenyl-synthetase-family-protein
MHEFTTLLAKHGHTVESRLSTLLSDHIQNGEISRPENLIKAMRYGVLNGGKRLRPFLVIQSAALFDIPVEHSLDVACALECVHCYSLIHDDLPAMDNDILRRGKPTVHVEFDEATAILAGNALLTFAFEIIAHKANTLSTDTRIKLITALAQSAGLGGMLGGQMLDLEAEKKPQENTDIITLQRMKTAALISFACQAGAIIGNASQELLTKLTAFGSYLGLAFQLTDDLLDVTANTQTLGKTAGKDETAQKATFVRLYGIEETQKKREALLTKAEALLYPFDDAKALPLQQAARFSATRKH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010161_2	2.1\|1340947\|30\|NC_010161\|CRISPRCasFinder	1340947-1340976	30	MN693707	Marine virus AFVG_250M784, complete genome	13714-13743	8	0.733
NC_010161_3	3.1\|1518324\|30\|NC_010161\|CRISPRCasFinder	1518324-1518353	30	MN693707	Marine virus AFVG_250M784, complete genome	13714-13743	8	0.733

1. spacer 2.1|1340947|30|NC_010161|CRISPRCasFinder matches to MN693707 (Marine virus AFVG_250M784, complete genome) position: , mismatch: 8, identity: 0.733

aagccttcttttggcaaagggacaacttgt	CRISPR spacer
ccgccttcctttggctaagggacaagccga	Protospacer
  ******.****** ********* ..*

2. spacer 3.1|1518324|30|NC_010161|CRISPRCasFinder matches to MN693707 (Marine virus AFVG_250M784, complete genome) position: , mismatch: 8, identity: 0.733

aagccttcttttggcaaagggacaacttgt	CRISPR spacer
ccgccttcctttggctaagggacaagccga	Protospacer
  ******.****** ********* ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

312384 : 422731

109

Acidithiobacillus_phage(14.29%)

tRNA,capsid,tail,integrase,head,portal,plate,terminase

attL 315519:315536|attR 429941:429958

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012230653.1\|312384_313761_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_012230656.1\|313792_314284_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_012230659.1\|314283_314970_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
315519:315536	attL	NA	NA	NA	NA
WP_012230660.1\|315864_316893_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_012230662.1\|316942_317548_-	recombination protein RecR	NA	NA	NA	NA
WP_012230664.1\|317579_317903_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_012230666.1\|317917_319858_-	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	1.7e-41	34.7
WP_012230668.1\|320694_321099_-	hypothetical protein	NA	NA	NA	NA
WP_012230670.1\|321645_322509_-	prephenate dehydratase	NA	NA	NA	NA
WP_012230672.1\|322505_323237_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_012230679.1\|323341_323905_+	cytochrome c family protein	NA	NA	NA	NA
WP_012230681.1\|324798_325593_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_012230683.1\|325680_326619_+	glutathione synthase	NA	NA	NA	NA
WP_012230685.1\|326758_327805_+	substrate-binding domain-containing protein	A0A1B1IWY0	uncultured_Mediterranean_phage	1.6e-62	39.4
WP_012230688.1\|327881_329342_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012230690.1\|329338_330628_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_012230692.1\|330679_331438_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	31.6
WP_012230694.1\|331459_332182_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_012230696.1\|332784_333621_+	cell wall hydrolase	NA	NA	NA	NA
WP_012230698.1\|333798_335046_+	aminopeptidase	NA	NA	NA	NA
WP_012230700.1\|335325_336201_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.6e-26	32.2
WP_012230701.1\|336286_337681_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_012230702.1\|337673_338294_+	ribonuclease D	U3REX2	uncultured_virus	1.8e-13	31.7
WP_038473220.1\|339727_340045_+	hypothetical protein	NA	NA	NA	NA
WP_012230703.1\|341575_342409_+	porin family protein	O11861	Bartonella_henselae_phage	4.0e-77	57.1
WP_012230704.1\|342746_343619_+	porin family protein	O11861	Bartonella_henselae_phage	4.3e-74	53.0
WP_012230705.1\|345026_346661_+	outer membrane beta-barrel protein	O11861	Bartonella_henselae_phage	3.6e-21	48.3
WP_012230706.1\|346910_349826_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	5.2e-63	25.6
WP_012230711.1\|350003_350495_+	hypothetical protein	NA	NA	NA	NA
WP_012230713.1\|351150_351597_-	nucleoside deaminase	NA	NA	NA	NA
WP_012230715.1\|351864_353265_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_012230716.1\|353245_353812_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_012230724.1\|354611_355058_+	hypothetical protein	NA	NA	NA	NA
WP_012230726.1\|356551_357883_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_038473230.1\|357869_358673_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_012230730.1\|358718_358964_+	DUF4170 domain-containing protein	NA	NA	NA	NA
WP_012230731.1\|360193_361516_+	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_012230734.1\|361505_362546_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_012230735.1\|362565_362802_-	DUF2093 domain-containing protein	NA	NA	NA	NA
WP_012230736.1\|362913_364767_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.7e-107	39.2
WP_012230737.1\|365040_366129_+	2'-deoxycytidine 5'-triphosphate deaminase	NA	NA	NA	NA
WP_012230738.1\|367212_368364_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
WP_038473233.1\|372563_372791_-	hypothetical protein	NA	NA	NA	NA
WP_012230743.1\|372787_373450_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	9.0e-48	64.9
WP_122364081.1\|374544_375165_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	5.1e-53	56.9
WP_012230745.1\|375594_376752_+\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	3.6e-76	40.5
WP_012230746.1\|377024_377615_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	3.9e-26	52.0
WP_012230747.1\|377734_378010_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_012230749.1\|378022_378304_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_012230750.1\|378428_378641_-	hypothetical protein	NA	NA	NA	NA
WP_012230751.1\|378769_378997_-	hypothetical protein	NA	NA	NA	NA
WP_012230752.1\|378993_379656_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	1.2e-47	61.5
WP_012230755.1\|379762_380086_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.2e-15	48.1
WP_012230757.1\|380097_380409_+	addiction module antidote protein	NA	NA	NA	NA
WP_012230759.1\|380481_381789_-	phage late control protein	K4HZC6	Acidithiobacillus_phage	1.1e-70	39.9
WP_012230761.1\|381785_382010_-\|tail	tail protein X	Q8H9M2	Vibrio_phage	9.8e-07	44.6
WP_012230762.1\|382006_382387_-\|tail	phage tail protein	V5YTC2	Pseudomonas_phage	3.4e-23	46.3
WP_012230763.1\|382392_384528_-\|tail	tail protein	NA	NA	NA	NA
WP_120100553.1\|384524_384638_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012230764.1\|384634_384922_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012230765.1\|384923_385430_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	5.5e-29	40.0
WP_012230766.1\|385429_386641_-\|tail	phage tail sheath subtilisin-like domain-containing protein	D5LGY7	Escherichia_phage	5.5e-128	53.2
WP_012230767.1\|387027_387759_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	6.9e-49	41.5
WP_012230777.1\|387755_388034_+	hypothetical protein	NA	NA	NA	NA
WP_012230778.1\|388079_388409_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012230779.1\|388496_388676_+	hypothetical protein	A0A222YXG1	Escherichia_phage	9.6e-13	60.7
WP_012230782.1\|390369_393513_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012230791.1\|393514_394621_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	1.7e-19	35.8
WP_012230798.1\|394620_395448_-\|plate	baseplate J/gp47 family protein	K4HZB7	Acidithiobacillus_phage	8.9e-37	34.1
WP_038473244.1\|395444_395786_-	GPW/gp25 family protein	Q75QM0	Wolbachia_phage	6.0e-32	60.6
WP_012230800.1\|395782_396448_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.1e-16	33.1
WP_012230801.1\|396428_396971_-	hypothetical protein	NA	NA	NA	NA
WP_012230802.1\|397024_397339_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	9.9e-05	32.3
WP_012230805.1\|397355_397652_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	9.0e-08	36.4
WP_012230806.1\|397698_397977_-	hypothetical protein	NA	NA	NA	NA
WP_012230810.1\|399088_400174_+	hypothetical protein	NA	NA	NA	NA
WP_012230813.1\|400556_401633_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	2.7e-54	34.7
WP_012230814.1\|401645_402014_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	1.3e-11	46.7
WP_038474435.1\|402010_402355_-	hypothetical protein	NA	NA	NA	NA
WP_038473247.1\|402273_403338_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.8e-67	48.3
WP_012230821.1\|403327_404899_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	3.1e-91	39.3
WP_012230825.1\|404898_405147_-	hypothetical protein	NA	NA	NA	NA
WP_012230826.1\|405150_407079_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	4.3e-167	52.3
WP_012230827.1\|407109_407661_-	hypothetical protein	NA	NA	NA	NA
WP_038473250.1\|407745_408012_+	BrnT family toxin	NA	NA	NA	NA
WP_012230834.1\|407989_408295_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_012230838.1\|408347_408626_-	hypothetical protein	NA	NA	NA	NA
WP_012230839.1\|408622_409363_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	2.0e-24	37.0
WP_012230840.1\|409961_410540_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	1.2e-08	33.8
WP_012230843.1\|410543_410885_-	hypothetical protein	NA	NA	NA	NA
WP_038473253.1\|411236_411419_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012230844.1\|411439_411862_+	hypothetical protein	Q7Y3V7	Yersinia_phage	1.3e-15	36.6
WP_012230845.1\|411864_412407_-	hypothetical protein	NA	NA	NA	NA
WP_012230846.1\|412417_412864_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	5.1e-31	54.8
WP_012230847.1\|413006_413381_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012230849.1\|413406_414279_-	DNA adenine methylase	A7YGS0	Campylobacter_phage	2.7e-07	22.3
WP_038474438.1\|414413_414929_-	hypothetical protein	NA	NA	NA	NA
WP_012230851.1\|414915_415272_-	hypothetical protein	NA	NA	NA	NA
WP_012230856.1\|415435_415855_-	hypothetical protein	NA	NA	NA	NA
WP_012230859.1\|415847_416921_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	4.4e-12	50.0
WP_012230860.1\|416910_417390_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.1e-50	62.7
WP_038473256.1\|417451_417763_-	hypothetical protein	A0A076G8E5	Sinorhizobium_phage	1.6e-10	50.0
WP_012230862.1\|417813_418464_+	helix-turn-helix transcriptional regulator	A0A076G6G1	Sinorhizobium_phage	8.9e-08	45.3
WP_012230863.1\|418626_419001_+	hypothetical protein	NA	NA	NA	NA
WP_012230865.1\|419069_419462_+	Rha family transcriptional regulator	A0A067YYV5	Escherichia_phage	3.8e-14	39.6
WP_012230867.1\|419471_420230_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.3e-39	38.6
WP_012230869.1\|420587_421178_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	2.3e-23	50.8
WP_012230871.1\|421329_422106_+	ERF family protein	A0A125RNR3	Pseudomonas_phage	1.3e-16	29.1
WP_012230877.1\|422107_422731_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	1.6e-46	46.0
429941:429958	attR	NA	NA	NA	NA

DBSCAN-SWA_2

475774 : 561008

Acidithiobacillus_phage(13.04%)

capsid,tail,integrase,head,portal,plate,terminase

attL 494105:494164|attR 572775:575054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012230948.1\|475774_476074_+	HigA family addiction module antidote protein	I6ZVM3	Aeromonas_phage	1.6e-07	34.2
WP_012230950.1\|476131_477169_-\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	4.9e-32	30.8
WP_012230952.1\|477171_477420_-	hypothetical protein	NA	NA	NA	NA
WP_012230954.1\|477531_478155_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	7.2e-47	46.5
WP_038473282.1\|478156_478963_-	ERF family protein	A0A0U2C0X9	Paracoccus_phage	4.5e-17	30.3
WP_012230958.1\|479036_479579_-	hypothetical protein	A0A076G7L7	Bacillus_phage	6.7e-09	52.6
WP_012230960.1\|479572_480064_-	hypothetical protein	K4PXF0	Edwardsiella_phage	7.7e-12	54.4
WP_012230962.1\|480067_480682_-	hypothetical protein	A0A0A7NNQ1	Lactobacillus_phage	9.3e-07	58.7
WP_012230964.1\|480693_481011_-	hypothetical protein	A0A0A7NQP6	Lactobacillus_phage	2.5e-11	63.0
WP_012230966.1\|481023_481755_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	1.4e-25	34.9
WP_012230968.1\|481827_482184_-	antA/AntB antirepressor family protein	NA	NA	NA	NA
WP_012230972.1\|482777_483380_-	helix-turn-helix transcriptional regulator	A0A1X9HW95	Ruegeria_phage	2.0e-17	43.5
WP_038474456.1\|483481_483727_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012230977.1\|484238_485384_+	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	2.1e-12	52.9
WP_038474459.1\|485547_485754_+	hypothetical protein	NA	NA	NA	NA
WP_012230985.1\|487592_487919_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012230987.1\|487915_488140_-	antitoxin MazE family protein	NA	NA	NA	NA
WP_012230988.1\|488362_488809_+	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.2e-32	55.7
WP_012230989.1\|488862_489363_+	hypothetical protein	NA	NA	NA	NA
WP_012230990.1\|489415_489673_+	antitoxin	NA	NA	NA	NA
WP_012230991.1\|489669_489996_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_007346764.1\|490206_490434_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_012230995.1\|490417_490687_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5S8E8	Streptococcus_phage	5.9e-14	44.4
WP_012231000.1\|491235_491679_-	hypothetical protein	NA	NA	NA	NA
WP_081458153.1\|493825_494350_-	hypothetical protein	A0A076G7L7	Bacillus_phage	8.5e-09	67.5
494105:494164	attL	NA	NA	NA	NA
WP_012231004.1\|494484_495063_-	hypothetical protein	A0A076G7L7	Bacillus_phage	3.4e-11	55.2
WP_012231005.1\|495144_495825_-	hypothetical protein	A0A076G7L7	Bacillus_phage	2.0e-10	55.4
WP_038473297.1\|502208_502388_+	hypothetical protein	NA	NA	NA	NA
WP_012231008.1\|502693_504310_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_007347209.1\|505304_505505_-	DNA-binding protein	NA	NA	NA	NA
WP_012231012.1\|507476_509531_+\|portal	phage portal protein	NA	NA	NA	NA
WP_012231013.1\|509547_510444_+	hypothetical protein	NA	NA	NA	NA
WP_012231014.1\|510541_511684_+\|capsid	N4-gp56 family major capsid protein	A0A1Y0SUD3	Pseudomonas_phage	8.3e-33	29.8
WP_012231015.1\|511703_512162_+	hypothetical protein	NA	NA	NA	NA
WP_012231020.1\|512236_512935_+	hypothetical protein	NA	NA	NA	NA
WP_012231022.1\|512934_514392_+	hypothetical protein	NA	NA	NA	NA
WP_012231024.1\|514433_514817_+	hypothetical protein	NA	NA	NA	NA
WP_012231026.1\|514818_515874_+\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_012231028.1\|515873_517823_+	hypothetical protein	C8CLJ2	Xylella_phage	1.7e-06	26.1
WP_012231029.1\|517815_520026_+	hypothetical protein	NA	NA	NA	NA
WP_012231031.1\|520749_521907_+\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	6.1e-76	40.3
WP_012231033.1\|522178_522736_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.0e-20	50.5
WP_012231039.1\|523495_523774_+	hypothetical protein	NA	NA	NA	NA
WP_012230747.1\|523893_524169_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_012230749.1\|524181_524463_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_012230750.1\|524587_524800_-	hypothetical protein	NA	NA	NA	NA
WP_012231042.1\|524928_525156_-	hypothetical protein	NA	NA	NA	NA
WP_012231043.1\|525152_525815_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	5.3e-48	62.1
WP_006589072.1\|525974_526277_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-18	49.0
WP_012231054.1\|526263_526584_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	2.6e-16	46.2
WP_012231055.1\|526627_526906_-	hypothetical protein	NA	NA	NA	NA
WP_012231056.1\|526902_527628_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	4.0e-25	36.9
WP_012231057.1\|527929_529237_-	phage late control protein	K4HZC6	Acidithiobacillus_phage	2.5e-70	39.7
WP_012230761.1\|529233_529458_-\|tail	tail protein X	Q8H9M2	Vibrio_phage	9.8e-07	44.6
WP_012230762.1\|529454_529835_-\|tail	phage tail protein	V5YTC2	Pseudomonas_phage	3.4e-23	46.3
WP_012230763.1\|529840_531976_-\|tail	tail protein	NA	NA	NA	NA
WP_120100553.1\|531972_532086_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012230764.1\|532082_532370_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012231058.1\|532371_532878_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	1.9e-29	40.6
WP_012230766.1\|532877_534089_-\|tail	phage tail sheath subtilisin-like domain-containing protein	D5LGY7	Escherichia_phage	5.5e-128	53.2
WP_012230767.1\|534475_535207_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	6.9e-49	41.5
WP_012230777.1\|535203_535482_+	hypothetical protein	NA	NA	NA	NA
WP_012231059.1\|535527_535869_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012231060.1\|535879_536158_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012231061.1\|536391_536643_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012231062.1\|536635_537022_+	hypothetical protein	NA	NA	NA	NA
WP_012231063.1\|537031_537328_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012230779.1\|537415_537595_+	hypothetical protein	A0A222YXG1	Escherichia_phage	9.6e-13	60.7
WP_012230782.1\|539288_542432_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012230791.1\|542433_543540_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	1.7e-19	35.8
WP_012230798.1\|543539_544367_-\|plate	baseplate J/gp47 family protein	K4HZB7	Acidithiobacillus_phage	8.9e-37	34.1
WP_038473244.1\|544363_544705_-	GPW/gp25 family protein	Q75QM0	Wolbachia_phage	6.0e-32	60.6
WP_012231064.1\|544701_545367_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	8.0e-12	30.3
WP_012230801.1\|545347_545890_-	hypothetical protein	NA	NA	NA	NA
WP_012231065.1\|545939_546212_+	toxin HicA	A0A2P1A0R7	Gordonia_phage	1.2e-06	65.0
WP_012231066.1\|546201_546519_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_012231067.1\|546564_546837_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_012231068.1\|546907_547216_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_012231069.1\|547212_547461_-	BrnT family toxin	NA	NA	NA	NA
WP_012231070.1\|547555_547912_-	hypothetical protein	NA	NA	NA	NA
WP_012231071.1\|547913_548990_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	5.0e-56	35.2
WP_012230814.1\|549002_549371_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	1.3e-11	46.7
WP_038474435.1\|549367_549712_-	hypothetical protein	NA	NA	NA	NA
WP_038473315.1\|549630_550698_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.8e-67	48.3
WP_012230821.1\|550687_552259_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	3.1e-91	39.3
WP_012230825.1\|552258_552507_-	hypothetical protein	NA	NA	NA	NA
WP_012230826.1\|552510_554439_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	4.3e-167	52.3
WP_012230827.1\|554469_555021_-	hypothetical protein	NA	NA	NA	NA
WP_038473250.1\|555105_555372_+	BrnT family toxin	NA	NA	NA	NA
WP_012230834.1\|555349_555655_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_012230838.1\|555707_555986_-	hypothetical protein	NA	NA	NA	NA
WP_012230839.1\|555982_556723_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	2.0e-24	37.0
WP_012231073.1\|557321_557900_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	5.5e-09	35.0
WP_012231074.1\|557903_558218_-	hypothetical protein	NA	NA	NA	NA
WP_038473319.1\|558532_558715_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012231075.1\|558735_559158_+	hypothetical protein	Q7Y3V7	Yersinia_phage	2.4e-14	35.7
WP_081458154.1\|559161_559668_-	hypothetical protein	NA	NA	NA	NA
WP_012231077.1\|559841_561008_+\|integrase	site-specific integrase	A0A088F800	Sulfitobacter_phage	3.1e-75	40.8
572775:575054	attR	NA	NA	NA	NA

DBSCAN-SWA_3

577389 : 590218

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231087.1\|577389_577869_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.8e-51	62.7
WP_038473333.1\|577947_578385_-	hypothetical protein	NA	NA	NA	NA
WP_122364095.1\|578508_578874_-	hypothetical protein	NA	NA	NA	NA
WP_038473334.1\|578973_579249_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004856665.1\|579343_579997_+	helix-turn-helix domain-containing protein	A0A076G6G1	Sinorhizobium_phage	2.5e-50	55.3
WP_012231089.1\|580017_581073_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	3.5e-62	38.3
WP_012231090.1\|581481_581856_+	hypothetical protein	NA	NA	NA	NA
WP_012231091.1\|581924_582317_+	Rha family transcriptional regulator	A0A067YYV5	Escherichia_phage	2.2e-14	39.6
WP_012231093.1\|582326_583085_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	4.6e-40	39.0
WP_012230964.1\|583097_583415_+	hypothetical protein	A0A0A7NQP6	Lactobacillus_phage	2.5e-11	63.0
WP_012230962.1\|583426_584041_+	hypothetical protein	A0A0A7NNQ1	Lactobacillus_phage	9.3e-07	58.7
WP_012230960.1\|584044_584536_+	hypothetical protein	K4PXF0	Edwardsiella_phage	7.7e-12	54.4
WP_012230958.1\|584529_585072_+	hypothetical protein	A0A076G7L7	Bacillus_phage	6.7e-09	52.6
WP_038473337.1\|585145_585907_+	ERF family protein	A0A0U2C0X9	Paracoccus_phage	5.5e-17	30.3
WP_012231098.1\|585908_586532_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	2.1e-46	46.0
WP_007347214.1\|586610_586814_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012231100.1\|587389_588547_+	phosphoserine transaminase	NA	NA	NA	NA
WP_012231101.1\|588928_590218_+	adenylosuccinate synthase	A0A291AUF9	Pandoravirus	4.3e-38	36.3

DBSCAN-SWA_4

934724 : 1012967

Tupanvirus(11.76%)

protease,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231439.1\|934724_935999_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.8e-133	58.6
WP_012231441.1\|936183_938610_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.1e-204	49.8
WP_012231443.1\|938841_939120_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	9.0e-18	57.3
WP_012231445.1\|940118_941543_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_012231446.1\|941928_943356_+	trigger factor	NA	NA	NA	NA
WP_012231448.1\|943481_944981_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_012231450.1\|945161_945560_+	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_012231452.1\|945645_946062_+	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_012231454.1\|947286_948018_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012231456.1\|948014_948845_-	RNA methyltransferase	NA	NA	NA	NA
WP_012231465.1\|949420_950596_+	elongation factor Tu	A0A2K9L516	Tupanvirus	1.4e-11	24.2
WP_012231467.1\|950952_951165_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_012231469.1\|951185_951716_+	transcription termination/antitermination protein NusG	A0A068C9G5	Rhizobium_phage	1.3e-12	31.7
WP_012231471.1\|951865_952294_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_012231473.1\|952298_953003_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_012231475.1\|953360_953879_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_012231477.1\|953980_954352_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_012231479.1\|954638_958790_+	DNA-directed RNA polymerase subunit beta	R4TQG3	Phaeocystis_globosa_virus	2.5e-26	30.0
WP_012231481.1\|958960_963172_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	1.3e-67	27.2
WP_012231485.1\|964330_965020_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	1.7e-25	33.0
WP_012231486.1\|965358_966750_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_012231487.1\|968629_968908_-	hypothetical protein	NA	NA	NA	NA
WP_012231488.1\|968940_970290_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.9e-28	36.2
WP_012231489.1\|970523_970895_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.6e-15	48.1
WP_012231491.1\|970901_973253_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.1e-180	45.0
WP_012231492.1\|973278_973701_-	HIT family protein	NA	NA	NA	NA
WP_012231493.1\|973834_974296_-	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	3.7e-24	43.1
WP_012231494.1\|974438_975275_+	cell envelope integrity EipB family protein	NA	NA	NA	NA
WP_038473465.1\|975443_976244_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_012231496.1\|976347_977271_+	elongation factor Ts	NA	NA	NA	NA
WP_012231497.1\|977427_978147_+	UMP kinase	NA	NA	NA	NA
WP_012231499.1\|978184_978745_+	ribosome recycling factor	NA	NA	NA	NA
WP_012231501.1\|979471_980287_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_038473468.1\|980302_981451_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_012231505.1\|981655_984052_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012231507.1\|984120_985167_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_012231508.1\|985168_985636_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_012231509.1\|985660_986473_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_012231510.1\|986487_987360_+	UDP-2,3-diacylglucosamine diphosphatase LpxI	NA	NA	NA	NA
WP_012231511.1\|987352_988549_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_012231512.1\|988569_989343_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	38.1
WP_012231513.1\|989423_990131_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_012231516.1\|990127_990850_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_012231518.1\|990927_991680_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012231520.1\|992108_992861_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012231522.1\|993703_994999_-	citrate (Si)-synthase	NA	NA	NA	NA
WP_012231524.1\|995263_996694_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_012231526.1\|996808_999118_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_012231527.1\|999414_1000119_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_012231528.1\|1000216_1000774_+	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_012231530.1\|1000979_1002371_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	5.1e-45	27.2
WP_012231532.1\|1002442_1003822_+	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA
WP_012231534.1\|1003949_1005611_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	6.9e-97	38.3
WP_012231536.1\|1005621_1006995_+\|tRNA	glutamate--tRNA ligase	A0A2K9L594	Tupanvirus	2.8e-11	36.8
WP_012231541.1\|1007055_1008459_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.4e-50	32.9
WP_012231543.1\|1008602_1009376_-	NAD kinase	NA	NA	NA	NA
WP_012231545.1\|1010155_1011334_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_081458177.1\|1011701_1011857_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_012231548.1\|1011998_1012325_+	hypothetical protein	NA	NA	NA	NA
WP_012231550.1\|1012481_1012967_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_5

1017869 : 1027710

Mannheimia_phage(10.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231565.1\|1017869_1018151_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	4.5e-17	46.2
WP_007346872.1\|1018166_1018454_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012231568.1\|1018498_1018777_-	hypothetical protein	NA	NA	NA	NA
WP_012231569.1\|1018773_1019487_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.2e-34	35.1
WP_012231073.1\|1020082_1020661_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	5.5e-09	35.0
WP_012231570.1\|1020664_1020985_-	hypothetical protein	NA	NA	NA	NA
WP_012231571.1\|1021458_1021854_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_012231574.1\|1021850_1022051_-	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	2.7e-08	47.4
WP_012231576.1\|1022115_1022652_-	hypothetical protein	NA	NA	NA	NA
WP_038473476.1\|1022662_1023109_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	2.1e-32	56.5
WP_038473479.1\|1023349_1023541_+	hypothetical protein	NA	NA	NA	NA
WP_012231580.1\|1023610_1024039_+	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	1.3e-10	34.4
WP_012231582.1\|1024087_1024636_-	antA/AntB antirepressor family protein	A0A0N6WET9	Escherichia_phage	2.8e-23	50.8
WP_012231584.1\|1024849_1025227_-	hypothetical protein	NA	NA	NA	NA
WP_012231586.1\|1025388_1025808_-	hypothetical protein	NA	NA	NA	NA
WP_012231587.1\|1025800_1026904_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	1.6e-12	51.4
WP_012231588.1\|1026893_1027241_-	YdaU family protein	A0A223W0C2	Agrobacterium_phage	6.2e-08	40.0
WP_012231589.1\|1027233_1027710_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.5e-49	61.8

DBSCAN-SWA_6

1032019 : 1110314

Edwardsiella_phage(24.24%)

integrase,terminase,portal

attL 1068625:1068658|attR 1125078:1125111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231595.1\|1032019_1032337_+	hypothetical protein	A0A0A7NQP6	Lactobacillus_phage	2.5e-11	61.1
WP_012231596.1\|1032348_1032918_+	hypothetical protein	K4PWT3	Edwardsiella_phage	7.1e-09	55.0
WP_038473484.1\|1032991_1033813_+	ERF family protein	Q9MC70	Pseudomonas_phage	1.9e-15	28.4
WP_012231598.1\|1033814_1034438_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	1.5e-44	42.9
WP_012231599.1\|1034516_1034720_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012231600.1\|1034913_1035951_-\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.5e-33	30.7
WP_012231601.1\|1035959_1036178_-	hypothetical protein	NA	NA	NA	NA
WP_012231602.1\|1036299_1036923_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	9.3e-47	44.6
WP_012231603.1\|1036924_1037740_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	1.2e-41	45.9
WP_012231605.1\|1038350_1038818_-	hypothetical protein	A0A0A7NP48	Lactobacillus_phage	4.7e-11	58.2
WP_012231606.1\|1038832_1039579_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	5.5e-54	45.7
WP_012231607.1\|1039627_1040047_-	hypothetical protein	NA	NA	NA	NA
WP_038473488.1\|1040275_1040608_-	hypothetical protein	NA	NA	NA	NA
WP_038473490.1\|1040714_1041032_+	hypothetical protein	NA	NA	NA	NA
WP_171815237.1\|1041591_1041930_+	hypothetical protein	S5MLS6	Pseudoalteromonas_phage	2.0e-19	56.6
WP_038473493.1\|1041944_1042160_+	hypothetical protein	NA	NA	NA	NA
WP_012231610.1\|1042203_1042680_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.2e-49	63.0
WP_012231611.1\|1042666_1043044_+	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_012231612.1\|1043033_1044122_+	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_171815238.1\|1044081_1044534_+	hypothetical protein	NA	NA	NA	NA
WP_012231614.1\|1044727_1045117_+	hypothetical protein	NA	NA	NA	NA
WP_012231615.1\|1045410_1045926_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	7.8e-23	59.6
WP_012231616.1\|1046006_1046666_+	hypothetical protein	K4Q356	Edwardsiella_phage	5.7e-10	50.8
WP_012231618.1\|1049203_1049983_-	hypothetical protein	K4Q356	Edwardsiella_phage	3.7e-08	47.6
WP_012231619.1\|1050088_1050667_-	hypothetical protein	A0A076G7L7	Bacillus_phage	5.9e-11	55.2
WP_012231620.1\|1050748_1051522_-	hypothetical protein	A0A076G7L7	Bacillus_phage	1.9e-09	53.3
WP_012231621.1\|1051603_1052335_-	hypothetical protein	K4PXF0	Edwardsiella_phage	1.1e-11	63.6
WP_012231622.1\|1053949_1058908_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	3.5e-43	26.7
WP_012231623.1\|1059439_1059841_-	hypothetical protein	NA	NA	NA	NA
WP_038474548.1\|1060294_1060606_-	hypothetical protein	NA	NA	NA	NA
WP_012231625.1\|1060811_1061117_-	hypothetical protein	NA	NA	NA	NA
WP_012231626.1\|1061567_1061717_-	hypothetical protein	NA	NA	NA	NA
WP_007347430.1\|1061814_1062015_-	DNA-binding protein	NA	NA	NA	NA
WP_012231627.1\|1062223_1063390_-\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	2.3e-75	38.8
WP_012231628.1\|1063813_1064338_+	hypothetical protein	NA	NA	NA	NA
WP_012231629.1\|1064339_1065074_-	hypothetical protein	NA	NA	NA	NA
WP_012231630.1\|1066930_1067710_-	hypothetical protein	K4Q356	Edwardsiella_phage	1.6e-08	49.2
WP_012231631.1\|1067823_1068402_-	hypothetical protein	A0A076G7L7	Bacillus_phage	2.6e-11	55.2
WP_012231632.1\|1068484_1069147_-	hypothetical protein	A0A076G7L7	Bacillus_phage	5.7e-10	51.7
1068625:1068658	attL	NA	NA	NA	NA
WP_012231633.1\|1069227_1069863_-	hypothetical protein	K4PXF0	Edwardsiella_phage	7.9e-09	52.8
WP_012231634.1\|1071504_1076493_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	6.3e-45	26.5
WP_012231635.1\|1077037_1078525_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_169309787.1\|1078496_1078646_-	hypothetical protein	NA	NA	NA	NA
WP_007347430.1\|1078952_1079153_-	DNA-binding protein	NA	NA	NA	NA
WP_012231636.1\|1079361_1080528_-\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	6.8e-75	38.8
WP_012231638.1\|1080929_1082258_+\|terminase	terminase	A0A088F6U9	Sulfitobacter_phage	1.7e-146	57.8
WP_012231639.1\|1082242_1084204_+\|portal	phage portal protein	H2DE37	Erwinia_phage	6.2e-36	24.0
WP_012231640.1\|1085696_1086476_-	hypothetical protein	K4Q356	Edwardsiella_phage	2.5e-09	50.8
WP_012231641.1\|1086592_1087171_-	hypothetical protein	A0A076G7L7	Bacillus_phage	3.4e-11	55.2
WP_012231642.1\|1087253_1087895_-	hypothetical protein	K4PXF0	Edwardsiella_phage	1.0e-08	52.8
WP_012231643.1\|1089618_1094562_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	1.7e-45	26.8
WP_012231644.1\|1095600_1097388_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_012231645.1\|1097412_1105458_+	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	2.1e-29	34.4
WP_012231646.1\|1105478_1105895_+	hypothetical protein	NA	NA	NA	NA
WP_038473522.1\|1105986_1106463_+	hypothetical protein	NA	NA	NA	NA
WP_012231649.1\|1108116_1108521_+	hypothetical protein	NA	NA	NA	NA
WP_012231650.1\|1108736_1108937_-	DNA-binding protein	NA	NA	NA	NA
WP_012231651.1\|1109147_1110314_-\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	3.5e-71	38.2
1125078:1125111	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1241366 : 1363047

116

Ochrobactrum_phage(77.59%)

transposase,tRNA,holin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231741.1\|1241366_1242926_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.1e-101	42.3
WP_012231742.1\|1242915_1243689_+	TatD family hydrolase	NA	NA	NA	NA
WP_012231743.1\|1243699_1244509_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012231744.1\|1244621_1244981_+	hypothetical protein	NA	NA	NA	NA
WP_012231745.1\|1245385_1245799_-	hypothetical protein	NA	NA	NA	NA
WP_012231746.1\|1245795_1246842_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_038473576.1\|1246866_1247685_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_012231748.1\|1247864_1249091_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_012231749.1\|1250115_1250460_+	hypothetical protein	NA	NA	NA	NA
WP_038473579.1\|1250437_1250794_+	membrane protein	NA	NA	NA	NA
WP_012231751.1\|1251231_1251759_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	2.2e-49	56.5
WP_012231752.1\|1252371_1253310_-	hypothetical protein	NA	NA	NA	NA
WP_012231753.1\|1253750_1256501_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_012231754.1\|1256524_1258165_-	site-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	1.4e-97	46.2
WP_012231755.1\|1258222_1258624_-	SUF system Fe-S cluster assembly protein	NA	NA	NA	NA
WP_012231756.1\|1258616_1259861_-	cysteine desulfurase	Q2XUY6	environmental_halophage	3.4e-96	39.8
WP_012231757.1\|1259871_1261137_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_012231758.1\|1261148_1261904_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.8e-07	24.1
WP_012231759.1\|1262064_1263576_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_012231760.1\|1263746_1264892_-	cysteine desulfurase	NA	NA	NA	NA
WP_012231761.1\|1265053_1265734_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012231762.1\|1266021_1267275_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	5.6e-67	40.9
WP_012231763.1\|1267487_1267973_+	peroxiredoxin	NA	NA	NA	NA
WP_122364087.1\|1268329_1269458_-	peptide chain release factor 2	NA	NA	NA	NA
WP_012231765.1\|1269626_1272092_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_038473585.1\|1272261_1273491_-	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	1.4e-09	27.1
WP_012231767.1\|1274086_1276702_+	ribonuclease E/G	NA	NA	NA	NA
WP_012231768.1\|1276771_1277383_-	invasion associated locus B family protein	NA	NA	NA	NA
WP_012231769.1\|1279749_1280619_-	hypothetical protein	NA	NA	NA	NA
WP_012231770.1\|1280869_1284370_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_012231771.1\|1284375_1284663_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_012231772.1\|1284729_1285410_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-23	32.7
WP_012231773.1\|1285409_1286678_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_012231774.1\|1286689_1288015_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_012231775.1\|1288216_1289893_-	ribonuclease J	NA	NA	NA	NA
WP_012231776.1\|1289939_1290749_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_012231777.1\|1290748_1292203_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_012231778.1\|1292220_1293690_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_012231779.1\|1293686_1295654_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_012231780.1\|1295660_1295969_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_012231781.1\|1295983_1296604_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_004860049.1\|1296700_1297192_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_012231782.1\|1297206_1298253_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_012231783.1\|1298275_1300345_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_012231784.1\|1300410_1301718_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_012231785.1\|1301819_1302491_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_012231786.1\|1302490_1303681_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_012231787.1\|1303801_1304413_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_012231788.1\|1304427_1305009_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_012231789.1\|1304999_1305365_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_012231790.1\|1307409_1308231_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_012231791.1\|1308373_1309357_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	5.4e-89	52.8
WP_012231792.1\|1309356_1309611_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	1.8e-12	48.8
WP_012231793.1\|1309607_1310078_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012231794.1\|1310234_1312571_-\|tail	phage tail tape measure protein	A0A219VHB3	Ochrobactrum_phage	2.0e-113	49.2
WP_012231795.1\|1312702_1313116_-	hypothetical protein	NA	NA	NA	NA
WP_012231796.1\|1313125_1313644_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.9e-62	65.3
WP_012231797.1\|1313640_1314930_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	3.3e-147	61.4
WP_012231798.1\|1315075_1315288_-	hypothetical protein	NA	NA	NA	NA
WP_012231799.1\|1315297_1316614_-	hypothetical protein	NA	NA	NA	NA
WP_012231800.1\|1316628_1319772_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012231801.1\|1319773_1320880_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	8.9e-16	35.3
WP_012231802.1\|1320879_1321746_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.9e-45	36.4
WP_012231803.1\|1321732_1322119_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	4.2e-29	53.4
WP_012231804.1\|1322122_1322323_-	hypothetical protein	NA	NA	NA	NA
WP_012231805.1\|1322335_1322929_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_038473602.1\|1322925_1323447_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	7.6e-42	50.6
WP_012231807.1\|1323443_1323938_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	6.7e-40	56.1
WP_012231808.1\|1323939_1324365_-	DUF1320 domain-containing protein	A0A219VH93	Ochrobactrum_phage	1.6e-26	47.5
WP_012231809.1\|1324380_1325346_-	hypothetical protein	A0A219VH83	Ochrobactrum_phage	1.2e-109	61.4
WP_012231810.1\|1325358_1325700_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	4.4e-14	46.4
WP_012231811.1\|1325696_1326746_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	3.1e-66	43.6
WP_012231812.1\|1327357_1328563_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	8.5e-129	53.4
WP_012231813.1\|1328555_1330133_-	DUF935 domain-containing protein	A0A219VH73	Ochrobactrum_phage	7.3e-173	56.5
WP_012231814.1\|1330145_1331768_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.8e-182	65.4
WP_012231815.1\|1331760_1332342_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	9.0e-36	47.5
WP_012231816.1\|1332304_1332661_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.5e-17	46.9
WP_012231817.1\|1332657_1332972_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	3.4e-13	39.4
WP_038473613.1\|1332981_1333206_-	hypothetical protein	A0A219VHE3	Ochrobactrum_phage	2.1e-09	52.3
WP_012231818.1\|1333171_1333513_-	hypothetical protein	NA	NA	NA	NA
WP_012231819.1\|1333505_1333793_-	hypothetical protein	A0A219VHD7	Ochrobactrum_phage	2.8e-14	57.6
WP_012231820.1\|1333789_1334371_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	1.1e-44	51.8
WP_012231821.1\|1334457_1334865_-	helix-turn-helix domain-containing protein	A0A219VHE2	Ochrobactrum_phage	2.4e-27	48.8
WP_012231822.1\|1334871_1335489_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	7.6e-41	44.7
WP_012231823.1\|1335499_1336123_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	7.1e-71	63.2
WP_012231825.1\|1336385_1336655_-	hypothetical protein	NA	NA	NA	NA
WP_012231826.1\|1336651_1337683_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	1.9e-89	53.1
WP_012231827.1\|1338040_1340011_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A219VHD4	Ochrobactrum_phage	1.1e-160	59.9
WP_012231828.1\|1340007_1340466_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	2.7e-43	64.3
WP_012231829.1\|1340462_1341479_-	ParB N-terminal domain-containing protein	A0A219VHB6	Ochrobactrum_phage	3.6e-72	46.7
WP_012231830.1\|1341478_1341877_-	hypothetical protein	NA	NA	NA	NA
WP_169309789.1\|1341860_1341998_-	hypothetical protein	NA	NA	NA	NA
WP_038473706.1\|1342074_1342368_-	helix-turn-helix domain-containing protein	A0A219VHB8	Ochrobactrum_phage	2.3e-19	65.3
WP_012231832.1\|1342520_1343051_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012231790.1\|1343710_1344532_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_012231791.1\|1344674_1345658_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	5.4e-89	52.8
WP_012231792.1\|1345657_1345912_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	1.8e-12	48.8
WP_012231793.1\|1345908_1346379_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012231794.1\|1346535_1348872_-\|tail	phage tail tape measure protein	A0A219VHB3	Ochrobactrum_phage	2.0e-113	49.2
WP_012231795.1\|1349003_1349417_-	hypothetical protein	NA	NA	NA	NA
WP_012231796.1\|1349426_1349945_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.9e-62	65.3
WP_012231797.1\|1349941_1351231_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	3.3e-147	61.4
WP_012231798.1\|1351376_1351589_-	hypothetical protein	NA	NA	NA	NA
WP_012231799.1\|1351598_1352915_-	hypothetical protein	NA	NA	NA	NA
WP_012231834.1\|1352929_1356073_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	9.2e-151	32.0
WP_012231835.1\|1356074_1357181_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	3.1e-16	35.3
WP_012231802.1\|1357180_1358047_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.9e-45	36.4
WP_012231803.1\|1358033_1358420_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	4.2e-29	53.4
WP_012231804.1\|1358423_1358624_-	hypothetical protein	NA	NA	NA	NA
WP_012231836.1\|1358636_1359230_-\|plate	phage baseplate assembly protein V	A0A219VHA3	Ochrobactrum_phage	1.2e-27	37.5
WP_049776837.1\|1359271_1359748_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	4.5e-41	51.6
WP_012231807.1\|1359744_1360239_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	6.7e-40	56.1
WP_012231808.1\|1360240_1360666_-	DUF1320 domain-containing protein	A0A219VH93	Ochrobactrum_phage	1.6e-26	47.5
WP_012231809.1\|1360681_1361647_-	hypothetical protein	A0A219VH83	Ochrobactrum_phage	1.2e-109	61.4
WP_012231838.1\|1361659_1362001_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	3.3e-14	47.3
WP_012231839.1\|1361997_1363047_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	3.1e-66	43.6

DBSCAN-SWA_8

1448983 : 1519745

Ochrobactrum_phage(78.38%)

transposase,plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231901.1\|1448983_1450777_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_012231902.1\|1450909_1452064_+	ribonuclease D	NA	NA	NA	NA
WP_012231903.1\|1452546_1454064_-	exopolyphosphatase	NA	NA	NA	NA
WP_012231904.1\|1454070_1456251_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_012231905.1\|1456575_1456824_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_012231906.1\|1456870_1458118_+	FAD-binding protein	NA	NA	NA	NA
WP_038473666.1\|1458295_1461784_-	DNA polymerase III subunit alpha	A0A1C9LWI9	Streptomyces_phage	5.6e-181	36.1
WP_012231908.1\|1462155_1464264_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_012231909.1\|1464665_1466489_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	6.9e-106	38.6
WP_012231910.1\|1466661_1468026_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	5.2e-26	34.3
WP_012231911.1\|1468040_1468826_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_049776891.1\|1468875_1469838_-	hypothetical protein	NA	NA	NA	NA
WP_012231913.1\|1469899_1470223_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	1.7e-20	45.3
WP_012231914.1\|1470349_1471552_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_012231915.1\|1471582_1473340_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_012231916.1\|1473490_1476019_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_012231917.1\|1476213_1476501_-	hypothetical protein	NA	NA	NA	NA
WP_012231918.1\|1476787_1477897_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_012231919.1\|1478006_1478993_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_012231920.1\|1479129_1480446_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_012231921.1\|1482625_1483840_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_012231790.1\|1484786_1485608_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_012231791.1\|1485750_1486734_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	5.4e-89	52.8
WP_012231792.1\|1486733_1486988_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	1.8e-12	48.8
WP_012231793.1\|1486984_1487455_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012231794.1\|1487611_1489948_-\|tail	phage tail tape measure protein	A0A219VHB3	Ochrobactrum_phage	2.0e-113	49.2
WP_012231795.1\|1490079_1490493_-	hypothetical protein	NA	NA	NA	NA
WP_012231796.1\|1490502_1491021_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.9e-62	65.3
WP_012231797.1\|1491017_1492307_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	3.3e-147	61.4
WP_012231798.1\|1492452_1492665_-	hypothetical protein	NA	NA	NA	NA
WP_012231799.1\|1492674_1493991_-	hypothetical protein	NA	NA	NA	NA
WP_012231800.1\|1494005_1497149_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012231801.1\|1497150_1498257_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	8.9e-16	35.3
WP_012231802.1\|1498256_1499123_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.9e-45	36.4
WP_012231803.1\|1499109_1499496_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	4.2e-29	53.4
WP_012231804.1\|1499499_1499700_-	hypothetical protein	NA	NA	NA	NA
WP_012231805.1\|1499712_1500306_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_038473602.1\|1500302_1500824_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	7.6e-42	50.6
WP_012231807.1\|1500820_1501315_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	6.7e-40	56.1
WP_012231808.1\|1501316_1501742_-	DUF1320 domain-containing protein	A0A219VH93	Ochrobactrum_phage	1.6e-26	47.5
WP_012231809.1\|1501757_1502723_-	hypothetical protein	A0A219VH83	Ochrobactrum_phage	1.2e-109	61.4
WP_012231810.1\|1502735_1503077_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	4.4e-14	46.4
WP_012231811.1\|1503073_1504123_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	3.1e-66	43.6
WP_012231812.1\|1504734_1505940_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	8.5e-129	53.4
WP_012231813.1\|1505932_1507510_-	DUF935 domain-containing protein	A0A219VH73	Ochrobactrum_phage	7.3e-173	56.5
WP_012231814.1\|1507522_1509145_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.8e-182	65.4
WP_012231815.1\|1509137_1509719_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	9.0e-36	47.5
WP_012231816.1\|1509681_1510038_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.5e-17	46.9
WP_012231817.1\|1510034_1510349_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	3.4e-13	39.4
WP_038473613.1\|1510358_1510583_-	hypothetical protein	A0A219VHE3	Ochrobactrum_phage	2.1e-09	52.3
WP_012231818.1\|1510548_1510890_-	hypothetical protein	NA	NA	NA	NA
WP_012231819.1\|1510882_1511170_-	hypothetical protein	A0A219VHD7	Ochrobactrum_phage	2.8e-14	57.6
WP_012231820.1\|1511166_1511748_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	1.1e-44	51.8
WP_012231821.1\|1511834_1512242_-	helix-turn-helix domain-containing protein	A0A219VHE2	Ochrobactrum_phage	2.4e-27	48.8
WP_012231822.1\|1512248_1512866_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	7.6e-41	44.7
WP_012231823.1\|1512876_1513500_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	7.1e-71	63.2
WP_012231825.1\|1513762_1514032_-	hypothetical protein	NA	NA	NA	NA
WP_012231826.1\|1514028_1515060_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	1.9e-89	53.1
WP_012231827.1\|1515417_1517388_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A219VHD4	Ochrobactrum_phage	1.1e-160	59.9
WP_012231828.1\|1517384_1517843_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	2.7e-43	64.3
WP_012231829.1\|1517839_1518856_-	ParB N-terminal domain-containing protein	A0A219VHB6	Ochrobactrum_phage	3.6e-72	46.7
WP_012231830.1\|1518855_1519254_-	hypothetical protein	NA	NA	NA	NA
WP_169309789.1\|1519237_1519375_-	hypothetical protein	NA	NA	NA	NA
WP_038473706.1\|1519451_1519745_-	helix-turn-helix domain-containing protein	A0A219VHB8	Ochrobactrum_phage	2.3e-19	65.3

DBSCAN-SWA_9

1527180 : 1535626

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012231932.1\|1527180_1527693_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.7e-46	59.9
WP_012231933.1\|1527711_1528314_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-44	53.0
WP_012231934.1\|1528316_1528823_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.0e-22	35.2
WP_038473713.1\|1528847_1531631_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.7e-103	34.3
WP_012231936.1\|1531871_1532378_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.9e-45	59.4
WP_012231937.1\|1532710_1535626_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.8

DBSCAN-SWA_10

1837012 : 1971311

Ochrobactrum_phage(69.57%)

transposase,plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041582682.1\|1837012_1838500_-\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	8.2e-33	27.4
WP_012232144.1\|1841244_1842090_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012232145.1\|1842594_1843671_+	TIGR04086 family membrane protein	NA	NA	NA	NA
WP_012232146.1\|1844451_1846284_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	6.0e-126	42.5
WP_012232147.1\|1846295_1849271_+	DEAD/DEAH box helicase family protein	A0A2K5B256	Erysipelothrix_phage	1.8e-204	42.9
WP_038473833.1\|1854120_1854309_-	hypothetical protein	NA	NA	NA	NA
WP_012232148.1\|1857683_1858076_+	transcriptional repressor	NA	NA	NA	NA
WP_012232149.1\|1858231_1859326_+	HlyD family secretion protein	NA	NA	NA	NA
WP_012232150.1\|1859350_1860922_+	DHA2 family efflux MFS transporter permease subunit	A0A0M3UL24	Mycobacterium_phage	3.2e-11	23.5
WP_012232151.1\|1863804_1864389_-	N-acetyltransferase	NA	NA	NA	NA
WP_012232152.1\|1864466_1865600_-	type III PLP-dependent enzyme	NA	NA	NA	NA
WP_038474647.1\|1867922_1868840_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_012232154.1\|1868955_1869639_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_038473839.1\|1870011_1870839_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_012232155.1\|1871936_1873052_+	alanine racemase	NA	NA	NA	NA
WP_038474649.1\|1874729_1877525_-	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.7e-268	53.0
WP_012232158.1\|1877530_1877899_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_012232159.1\|1877905_1879018_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_012232160.1\|1879698_1880361_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012232161.1\|1880374_1880581_+	Trm112 family protein	NA	NA	NA	NA
WP_038474653.1\|1881542_1881923_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	1.4e-13	55.1
WP_012232163.1\|1882420_1883452_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012232164.1\|1884003_1884684_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_012232165.1\|1885144_1885963_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012232166.1\|1885990_1887025_+	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-28	35.2
WP_012232167.1\|1887017_1887677_+	ABC transporter permease	NA	NA	NA	NA
WP_012232171.1\|1889411_1889891_-	MaoC family dehydratase	NA	NA	NA	NA
WP_012232172.1\|1890058_1891387_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_012232173.1\|1891667_1891832_+	hypothetical protein	NA	NA	NA	NA
WP_012232174.1\|1892824_1893181_-	hypothetical protein	NA	NA	NA	NA
WP_038473849.1\|1894086_1894383_-	hypothetical protein	NA	NA	NA	NA
WP_038473852.1\|1895178_1895376_-	hypothetical protein	NA	NA	NA	NA
WP_012232175.1\|1896059_1896803_+	creatininase family protein	NA	NA	NA	NA
WP_012232176.1\|1896824_1897856_+	GTP-binding protein	NA	NA	NA	NA
WP_012232177.1\|1897873_1898845_+	hypothetical protein	NA	NA	NA	NA
WP_012232178.1\|1900298_1903679_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012232179.1\|1903846_1907152_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012232180.1\|1907324_1909985_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012232181.1\|1910179_1913554_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_162467692.1\|1913949_1914090_-	hypothetical protein	NA	NA	NA	NA
WP_012232182.1\|1914498_1917183_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012232183.1\|1918358_1921547_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_149030170.1\|1922215_1927813_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012232185.1\|1929074_1930025_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012232186.1\|1930124_1931081_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.9e-62	42.8
WP_012232187.1\|1931073_1932024_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_012232188.1\|1932020_1932779_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	3.6e-16	29.1
WP_012231790.1\|1933106_1933928_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_012231791.1\|1934070_1935054_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	5.4e-89	52.8
WP_012231792.1\|1935053_1935308_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	1.8e-12	48.8
WP_012231793.1\|1935304_1935775_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012232189.1\|1935931_1938268_-\|tail	phage tail tape measure protein	A0A219VHB3	Ochrobactrum_phage	2.0e-113	49.2
WP_012231795.1\|1938399_1938813_-	hypothetical protein	NA	NA	NA	NA
WP_012231796.1\|1938822_1939341_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.9e-62	65.3
WP_012231797.1\|1939337_1940627_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	3.3e-147	61.4
WP_012231798.1\|1940772_1940985_-	hypothetical protein	NA	NA	NA	NA
WP_012231799.1\|1940994_1942311_-	hypothetical protein	NA	NA	NA	NA
WP_012231800.1\|1942325_1945469_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012231801.1\|1945470_1946577_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	8.9e-16	35.3
WP_012231802.1\|1946576_1947443_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.9e-45	36.4
WP_012231803.1\|1947429_1947816_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	4.2e-29	53.4
WP_012231804.1\|1947819_1948020_-	hypothetical protein	NA	NA	NA	NA
WP_012231805.1\|1948032_1948626_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_038473602.1\|1948622_1949144_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	7.6e-42	50.6
WP_012231807.1\|1949140_1949635_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	6.7e-40	56.1
WP_012231808.1\|1949636_1950062_-	DUF1320 domain-containing protein	A0A219VH93	Ochrobactrum_phage	1.6e-26	47.5
WP_012231809.1\|1950077_1951043_-	hypothetical protein	A0A219VH83	Ochrobactrum_phage	1.2e-109	61.4
WP_012231810.1\|1951055_1951397_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	4.4e-14	46.4
WP_012231811.1\|1951393_1952443_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	3.1e-66	43.6
WP_012231812.1\|1953054_1954260_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	8.5e-129	53.4
WP_012231813.1\|1954252_1955830_-	DUF935 domain-containing protein	A0A219VH73	Ochrobactrum_phage	7.3e-173	56.5
WP_012231814.1\|1955842_1957465_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.8e-182	65.4
WP_012231815.1\|1957457_1958039_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	9.0e-36	47.5
WP_012232190.1\|1958001_1958358_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.5e-17	48.0
WP_012232191.1\|1958354_1958669_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	1.2e-13	40.4
WP_038473872.1\|1958652_1958904_-	hypothetical protein	NA	NA	NA	NA
WP_012232192.1\|1958869_1959211_-	hypothetical protein	NA	NA	NA	NA
WP_012232193.1\|1959203_1959491_-	hypothetical protein	A0A219VHD7	Ochrobactrum_phage	6.2e-14	56.1
WP_012232194.1\|1959487_1960069_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	1.8e-44	51.3
WP_012232195.1\|1960155_1960563_-	helix-turn-helix domain-containing protein	A0A219VHE2	Ochrobactrum_phage	4.1e-27	48.8
WP_012232196.1\|1960569_1961187_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.5e-36	43.1
WP_012232197.1\|1961209_1961833_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	4.6e-70	61.7
WP_041582725.1\|1961825_1962095_-	hypothetical protein	NA	NA	NA	NA
WP_012231825.1\|1962094_1962364_-	hypothetical protein	NA	NA	NA	NA
WP_012231826.1\|1962360_1963392_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	1.9e-89	53.1
WP_012232199.1\|1963749_1965729_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A219VHD4	Ochrobactrum_phage	1.1e-160	59.9
WP_012232200.1\|1965725_1966184_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	6.0e-43	64.3
WP_041582684.1\|1966180_1967041_-	ParB/RepB/Spo0J family partition protein	A0A219VHB6	Ochrobactrum_phage	1.5e-71	51.2
WP_012232202.1\|1967040_1967439_-	hypothetical protein	A0A219VHC3	Ochrobactrum_phage	3.0e-30	60.0
WP_169309790.1\|1967422_1967560_-	hypothetical protein	NA	NA	NA	NA
WP_005864619.1\|1967633_1967939_-	helix-turn-helix domain-containing protein	A0A0C4UQU0	Shigella_phage	2.7e-07	43.8
WP_041582726.1\|1968089_1968620_+	helix-turn-helix domain-containing protein	A0A219VHC1	Ochrobactrum_phage	1.1e-24	39.5
WP_012231790.1\|1969109_1969931_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_038474666.1\|1970073_1971057_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	1.1e-89	53.1
WP_012232099.1\|1971056_1971311_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	8.0e-13	48.8

DBSCAN-SWA_11

2244787 : 2262552

Brucella_phage(20.0%)

capsid,terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012232354.1\|2244787_2245918_-\|tail	tail fiber protein	B2ZY49	Ralstonia_phage	2.6e-18	39.7
WP_012232355.1\|2245925_2246939_-\|tail	tail fiber protein	D5LGZ0	Escherichia_phage	5.3e-15	45.5
WP_012232356.1\|2246947_2247949_-\|tail	tail fiber protein	F6LQE6	Bdellovibrio_phage	6.6e-18	34.5
WP_012232357.1\|2247961_2248615_-	transglycosylase SLT domain-containing protein	L7TQZ1	Rhizobium_phage	1.3e-30	49.4
WP_012232358.1\|2248652_2250842_-	hypothetical protein	NA	NA	NA	NA
WP_012232359.1\|2250855_2252151_-	hypothetical protein	NA	NA	NA	NA
WP_012232360.1\|2252185_2253037_-	hypothetical protein	NA	NA	NA	NA
WP_012232361.1\|2253038_2253464_-	hypothetical protein	NA	NA	NA	NA
WP_012232362.1\|2253463_2254921_-	hypothetical protein	A0A1B1IQM4	uncultured_Mediterranean_phage	6.0e-36	27.0
WP_012232363.1\|2254922_2255630_-	hypothetical protein	NA	NA	NA	NA
WP_012232364.1\|2255695_2256004_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.1e-15	45.3
WP_012232365.1\|2255984_2256269_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	2.6e-12	49.4
WP_012232366.1\|2256304_2256685_-	hypothetical protein	NA	NA	NA	NA
WP_012232367.1\|2256695_2257076_-	hypothetical protein	NA	NA	NA	NA
WP_012232368.1\|2257098_2258226_-\|capsid	N4-gp56 family major capsid protein	A0A248SKT9	Klebsiella_phage	3.9e-43	32.4
WP_012232369.1\|2258319_2259207_-	hypothetical protein	NA	NA	NA	NA
WP_012232370.1\|2259220_2261239_-\|portal	phage portal protein	H2DE37	Erwinia_phage	6.3e-36	24.0
WP_012231638.1\|2261223_2262552_-\|terminase	terminase	A0A088F6U9	Sulfitobacter_phage	1.7e-146	57.8

DBSCAN-SWA_12

2269186 : 2276832

Acidithiobacillus_phage(16.67%)

integrase

attL 2271234:2271249|attR 2277110:2277125

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012232380.1\|2269186_2269654_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.0e-46	60.7
WP_012232381.1\|2269729_2270440_+	hypothetical protein	NA	NA	NA	NA
WP_012232383.1\|2271020_2271302_-	hypothetical protein	NA	NA	NA	NA
2271234:2271249	attL	NA	NA	NA	NA
WP_012232384.1\|2271422_2271752_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012232385.1\|2272014_2272434_+	hypothetical protein	NA	NA	NA	NA
WP_012232386.1\|2272482_2273229_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	9.2e-49	42.4
WP_122364100.1\|2273244_2273712_+	hypothetical protein	A0A0A7NP48	Lactobacillus_phage	9.5e-12	58.2
WP_012232388.1\|2273851_2274673_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	6.5e-40	41.5
WP_012232389.1\|2274674_2275298_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	7.2e-47	43.9
WP_012232390.1\|2275379_2275655_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012232391.1\|2275659_2276832_-\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	3.6e-76	41.0
2277110:2277125	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2472335 : 2566850

Ochrobactrum_phage(67.5%)

transposase,tRNA,tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012232545.1\|2472335_2473034_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012232546.1\|2473335_2473881_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_012232547.1\|2474012_2474834_+	SapC family protein	NA	NA	NA	NA
WP_012232548.1\|2474837_2475806_+	tyrosine recombinase XerC	A0A0F6SJK8	Mycobacterium_phage	2.3e-15	28.1
WP_012232549.1\|2476367_2476640_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_012232550.1\|2476764_2477385_+	J domain-containing protein	NA	NA	NA	NA
WP_012232551.1\|2477590_2478571_+	cobaltochelatase subunit CobS	L7TKP0	Rhizobium_phage	1.5e-38	34.0
WP_012232552.1\|2478586_2480497_+	cobaltochelatase subunit CobT	J9Q7G6	Salmonella_phage	1.3e-14	30.1
WP_012232553.1\|2481611_2482295_-	VUT family protein	A0A2I7SAW6	Vibrio_phage	1.8e-22	35.9
WP_012232554.1\|2482442_2482760_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_012232555.1\|2483039_2483837_+	SURF1 family protein	NA	NA	NA	NA
WP_012232556.1\|2484983_2486603_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.8e-65	48.1
WP_012232557.1\|2486952_2487105_+	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_012232558.1\|2488592_2488790_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_012232559.1\|2489167_2490913_-	heparinase II/III family protein	NA	NA	NA	NA
WP_012232560.1\|2490977_2492342_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_012232561.1\|2492401_2493451_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_012232562.1\|2493534_2493750_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_012232563.1\|2493898_2494273_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_038474769.1\|2494289_2494619_-	chorismate mutase	NA	NA	NA	NA
WP_012232565.1\|2494643_2496206_-	signal recognition particle protein	NA	NA	NA	NA
WP_012232566.1\|2496457_2497114_-	carbonic anhydrase	NA	NA	NA	NA
WP_012232567.1\|2497397_2502113_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_171815244.1\|2504384_2505440_-	DUF2125 domain-containing protein	NA	NA	NA	NA
WP_012232569.1\|2506307_2507054_-	glutamine amidotransferase	NA	NA	NA	NA
WP_012232570.1\|2507213_2508776_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012232571.1\|2508787_2509972_-	membrane protein	NA	NA	NA	NA
WP_012232572.1\|2510348_2511443_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.8e-73	45.9
WP_012232573.1\|2512121_2512550_+	EVE domain-containing protein	NA	NA	NA	NA
WP_012232574.1\|2513446_2514127_+	response regulator transcription factor	NA	NA	NA	NA
WP_012232575.1\|2515404_2516175_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_038474775.1\|2516400_2518812_-	TIGR02302 family protein	NA	NA	NA	NA
WP_012232577.1\|2518928_2520203_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_012232578.1\|2520212_2520395_-	hypothetical protein	NA	NA	NA	NA
WP_012232579.1\|2520446_2521847_-	argininosuccinate lyase	NA	NA	NA	NA
WP_012232580.1\|2521880_2522579_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_038474778.1\|2522580_2523057_-	YaiI/YqxD family protein	NA	NA	NA	NA
WP_012232582.1\|2523092_2523944_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_012232583.1\|2525103_2526042_-	prephenate/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_158305319.1\|2526567_2526711_+	hypothetical protein	NA	NA	NA	NA
WP_012232584.1\|2527002_2528043_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_012232585.1\|2528047_2528842_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	5.1e-05	20.6
WP_012232586.1\|2528834_2529731_-	ABC transporter permease	NA	NA	NA	NA
WP_012232587.1\|2529793_2530771_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012231790.1\|2531282_2532104_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.5e-81	59.3
WP_012231791.1\|2532246_2533230_-	phage late control protein	A0A219VHA9	Ochrobactrum_phage	5.4e-89	52.8
WP_012231792.1\|2533229_2533484_-\|tail	tail protein X	A0A219VHB0	Ochrobactrum_phage	1.8e-12	48.8
WP_012231793.1\|2533480_2533951_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012232189.1\|2534107_2536444_-\|tail	phage tail tape measure protein	A0A219VHB3	Ochrobactrum_phage	2.0e-113	49.2
WP_012231795.1\|2536575_2536989_-	hypothetical protein	NA	NA	NA	NA
WP_012231796.1\|2536998_2537517_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.9e-62	65.3
WP_012231797.1\|2537513_2538803_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	3.3e-147	61.4
WP_012231798.1\|2538948_2539161_-	hypothetical protein	NA	NA	NA	NA
WP_012231799.1\|2539170_2540487_-	hypothetical protein	NA	NA	NA	NA
WP_012231800.1\|2540501_2543645_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	5.4e-151	32.0
WP_012231801.1\|2543646_2544753_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	8.9e-16	35.3
WP_012231802.1\|2544752_2545619_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.9e-45	36.4
WP_012231803.1\|2545605_2545992_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	4.2e-29	53.4
WP_012231804.1\|2545995_2546196_-	hypothetical protein	NA	NA	NA	NA
WP_012231805.1\|2546208_2546802_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_038473602.1\|2546798_2547320_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	7.6e-42	50.6
WP_012231807.1\|2547316_2547811_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	6.7e-40	56.1
WP_012231808.1\|2547812_2548238_-	DUF1320 domain-containing protein	A0A219VH93	Ochrobactrum_phage	1.6e-26	47.5
WP_012231809.1\|2548253_2549219_-	hypothetical protein	A0A219VH83	Ochrobactrum_phage	1.2e-109	61.4
WP_012231810.1\|2549231_2549573_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	4.4e-14	46.4
WP_012231811.1\|2549569_2550619_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	3.1e-66	43.6
WP_012231812.1\|2551230_2552436_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	8.5e-129	53.4
WP_012231813.1\|2552428_2554006_-	DUF935 domain-containing protein	A0A219VH73	Ochrobactrum_phage	7.3e-173	56.5
WP_012231814.1\|2554018_2555641_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.8e-182	65.4
WP_012231815.1\|2555633_2556215_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	9.0e-36	47.5
WP_012232190.1\|2556177_2556534_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.5e-17	48.0
WP_012232191.1\|2556530_2556845_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	1.2e-13	40.4
WP_038473872.1\|2556828_2557080_-	hypothetical protein	NA	NA	NA	NA
WP_012232192.1\|2557045_2557387_-	hypothetical protein	NA	NA	NA	NA
WP_012232193.1\|2557379_2557667_-	hypothetical protein	A0A219VHD7	Ochrobactrum_phage	6.2e-14	56.1
WP_012232194.1\|2557663_2558245_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	1.8e-44	51.3
WP_012232195.1\|2558331_2558739_-	helix-turn-helix domain-containing protein	A0A219VHE2	Ochrobactrum_phage	4.1e-27	48.8
WP_012232196.1\|2558745_2559363_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	2.5e-36	43.1
WP_012232197.1\|2559385_2560009_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	4.6e-70	61.7
WP_041582725.1\|2560001_2560271_-	hypothetical protein	NA	NA	NA	NA
WP_012231825.1\|2560270_2560540_-	hypothetical protein	NA	NA	NA	NA
WP_012231826.1\|2560536_2561568_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	1.9e-89	53.1
WP_012232199.1\|2561925_2563905_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A219VHD4	Ochrobactrum_phage	1.1e-160	59.9
WP_012232200.1\|2563901_2564360_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	6.0e-43	64.3
WP_012232588.1\|2564356_2565265_-	ParB/RepB/Spo0J family partition protein	A0A219VHB6	Ochrobactrum_phage	6.1e-71	49.2
WP_012232589.1\|2565264_2565663_-	hypothetical protein	NA	NA	NA	NA
WP_169309794.1\|2565646_2565787_-	hypothetical protein	NA	NA	NA	NA
WP_005864619.1\|2565860_2566166_-	helix-turn-helix domain-containing protein	A0A0C4UQU0	Shigella_phage	2.7e-07	43.8
WP_012232590.1\|2566319_2566850_+	helix-turn-helix domain-containing protein	G8GWB1	Rhodobacter_phage	2.5e-08	42.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010160

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7554 : 18660

Edwardsiella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012230213.1\|7554_8277_-	hypothetical protein	K4Q356	Edwardsiella_phage	1.4e-09	52.4
WP_012230215.1\|8389_8968_-	hypothetical protein	A0A076G7L7	Bacillus_phage	2.2e-10	53.4
WP_012230222.1\|9050_9824_-	hypothetical protein	K4Q356	Edwardsiella_phage	3.3e-09	52.6
WP_012230225.1\|9906_10569_-	hypothetical protein	A0A076G7L7	Bacillus_phage	1.5e-10	53.4
WP_012230227.1\|10650_11292_-	hypothetical protein	K4PXF0	Edwardsiella_phage	1.0e-08	52.8
WP_012230229.1\|13030_13531_+	hypothetical protein	NA	NA	NA	NA
WP_040132227.1\|13689_18660_-	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	2.7e-43	28.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010160

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection