CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014614	[Clostridium] sticklandii, complete genome	1 crisprs	cas3,DinG,csa3,cas14j,WYL,casR,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014614_1

1407987-1408174

Orphan

I-B

Consensus_repeat	Method
GTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTAC	CRISPRCasFinder
GTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTACT	PILER-CR

2 spacers

The CRISPR arrays of NC_014614_1

>merge|NC_014614|1|1407987-1408174|CRISPRCasFinder,PILER-CR
TTTTTAATCATATTTTTAGCGGAATGTGGTTTCTTACTTAATTGTGACAGAGAGTCACGATTAGAAGGACTCTGGTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTACTCAAAATGATAATTATTATCTAATATATCATTTTGTCGTGTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTACC

>NC_014614|1|1|1407987-1408173|CRISPRCasFinder
TTTTTAATCATATTTTTAGCGGAATGTGGTTTCTTAC	TTAATTGTGACAGAGAGTCACGATTAGAAGGACTCTG
GTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTAC	TCAAAATGATAATTATTATCTAATATATCATTTTGTCGT
GTTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTAC

>NC_014614|1|1|1407988-1408174|PILER-CR
TTTTAATCATATTTTTAGCGGAATGTGGTTTCTTACTT	AATTGTGACAGAGAGTCACGATTAGAAGGACTCTGG
TTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTACTC	AAAATGATAATTATTATCTAATATATCATTTTGTCGTG
TTTCAATCCTTGTTTTAGTGGAATGTGGTTTCTTACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014614.1\|WP_013361454.1\|1397791_1399561_-\|nitric-oxide-reductase-activation-protein	unknown	unknown	gnl\|CDD\|238731
NC_014614.1\|WP_013361471.1\|1417337_1417571_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361470.1\|1416517_1416715_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361463.1\|1408635_1409136_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361457.1\|1401931_1403272_+\|citrate/2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|184465
NC_014614.1\|WP_013361472.1\|1417968_1419066_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276962
NC_014614.1\|WP_013361462.1\|1406832_1407735_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NC_014614.1\|WP_013361464.1\|1409217_1409769_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361453.1\|1397472_1397799_+\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361458.1\|1403554_1404481_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NC_014614.1\|WP_013361467.1\|1411633_1412584_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NC_014614.1\|WP_013361469.1\|1413164_1416167_-\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NC_014614.1\|WP_013361466.1\|1410585_1411107_+\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361452.1\|1396120_1397302_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NC_014614.1\|WP_013361465.1\|1409844_1410381_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361468.1\|1412640_1413171_-\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361461.1\|1405940_1406807_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_014614.1\|WP_041487134.1\|1399583_1400504_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_014614.1\|WP_013361459.1\|1404500_1405400_+\|hypothetical-protein	unknown	unknown	unknown
NC_014614.1\|WP_013361456.1\|1400907_1401912_+\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549

Protein	Function_ID	Function_description	E-value
NC_014614.1\|WP_013361467.1\|1411633_1412584_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	5.35864e-28
NC_014614.1\|WP_013361469.1\|1413164_1416167_-\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.45444e-82
NC_014614.1\|WP_013361462.1\|1406832_1407735_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.87282e-16
NC_014614.1\|WP_013361452.1\|1396120_1397302_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NC_014614.1\|WP_013361457.1\|1401931_1403272_+\|citrate/2-methylcitrate-synthase	gnl\|CDD\|184465	PRK14032, PRK14032, citrate synthase; Provisional.	0
NC_014614.1\|WP_013361461.1\|1405940_1406807_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.96947e-13
NC_014614.1\|WP_041487134.1\|1399583_1400504_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.79321e-21
NC_014614.1\|WP_013361456.1\|1400907_1401912_+\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	2.43556e-149
NC_014614.1\|WP_013361472.1\|1417968_1419066_-\|hypothetical-protein	gnl\|CDD\|276962	cd02202, CetZ_tubulin-like, Cell-structure-related euryarchaeota tubulin/FtsZ homologs. CetZ proteins comprise a distinct tubulin/FtsZ family. The crystal structures of CetZ contain the FtsZ/tubulin superfamily fold and its family members have mosaic of tubulin-like and FtsZ-like amino acid residues. However, a recent study found that CetZ proteins (formerly annotated FtsZ type 2) are not required for cell division, whereas FtsZ proteins play an important role. Instead, CetZ proteins are shown to be involved in controlling archaeal cell shape dynamics. The results from inactivation studies of CetZ proteins in Haloferax volcanii suggest that CetZ1 is essential for normal swimming motility and rod-cell development.	1.23006e-15
NC_014614.1\|WP_013361454.1\|1397791_1399561_-\|nitric-oxide-reductase-activation-protein	gnl\|CDD\|238731	cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------> NO2- ------> NO -------> N2O ---------> N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.	3.01574e-16
NC_014614.1\|WP_013361458.1\|1403554_1404481_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.47055e-73

>NC_014614.1|WP_013361462.1|1406832_1407735_+|tyrosine-type-recombinase/integrase
MRTIKTVVKEYKEFLQCEDLAESTKEKYSATIDELVDFIKVKYKKAKFISILKHDIIIDFSEHLFEKNEKTETIRVKLYAIKKFVMFVIDMQYINQKNISISRNFINHIISTRRTIKNKRGVIKDKDFNLILKAFENNNKKKLILLLKHEYGFRISEVLSIKWKDVNLEENKIYINNKKGNDAKVFKIDDKYMRQIDKLDRKSEWVFSSDKNQNGQIHRSTISKNFKNIRELNSIDENICLHSLRNTFTTNSVIKNTEDAYIQRHTGHKSLDVLNKYIVFEADNLRDVVDNSSLDFIIGN
>NC_014614.1|WP_013361461.1|1405940_1406807_+|site-specific-integrase
MKSLKVAVEMYQCDLMLTGKKESTILSYMKDATTFQEFLEKNMKKSSWEIDIKSIKRKEIVKFKQYLIKDKNYSDTSVKRIFNSLRTFYKFLNEQFEVENLMLNEAFGKKKDIVALKTSKREKIIAQESLLEFFDKLRKTNDSIRNTSIFSILLLVGINAEEVIKLKWSDLDFNKRTIKIQRDELIELPISLSLANQLKTYYILQKEKKINSIYIFNSINNPNQAMSINSLKSIYKNNSKNINITGGIKAFQVTFIIENLKKNISLHKIAEFTGHKRVDSLSIYKDLA
>NC_014614.1|WP_013361459.1|1404500_1405400_+|hypothetical-protein
MKESTIIKISKFLDENGFELLNHKNNTLRIRHLSCDTEFDLNYTSKKNIKCIRCNPIEKLKKESSLKIYQLNEKLKENNQDLVARFSYIRTTKDKVVIENTKTKEVSKSNRYENIIHHNNTISFDISTKNETIVQHAFQEFGFNPDPDFVLNIAKNLQFPDCKSKQPLRFDLALRYYESIVLIIEIDLDSHFYDNSKNKMFNEYVSLNDRIKKDSIKDKYCLYREYPLLRLTPISSRSKYDESRLIKLNNNKYCAQLIGTTNSFNKSVDIMTQVNKETNNKSFEKFIKDIKDNIIYCIN
>NC_014614.1|WP_013361458.1|1403554_1404481_+|tyrosine-type-recombinase/integrase
MFVHEKKEKIKLEYFDEFLAYMTVERNASKFTISSYTSDFRILEEYLKERNMKVSIETLNVATIRTFIHFLRLEKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRTLLDTIMKTGGKDAIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGKKQRILPMPETLYQDLLAYMNNSLPITNTALFITSNNKRVNFRGMNNLFQKYIKRAGLSGKGYTLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDSVDKHPLSHI
>NC_014614.1|WP_013361457.1|1401931_1403272_+|citrate/2-methylcitrate-synthase
METAIDKLAILTESNSLIEPELYDKYNVKRGLRNSNGTGVLVGLTKIGSVEGYKLIDDKKIPKEGKLFYRGINVEEIVDGFQKDNRMGFEETTYLLLFGKLPNKTELDDFNKLLSEMRCLPKHFTENMILKIPSSNIMNKLQRSVLVLYSSDDNPEDLSVRNVLKQSLNLIAKFPTIISYGYQAKSHYFYDNSLFIHSPRKDLSTAENILHMIRPDSTYTKTEAETLDLSLVLHAEHGGGNNSAFATHVVSSSGTDTYSAIATAVGSLKGPKHGGANLKVRDMVADIKENVTNWSDKNLLKDYLVKILKKDAFDNSGLIYGMGHAVYTLSDPRAELLKKKAKELACEKDSLKEYELYTNIEELSKEIYKTFKGEDAVISANVDLYSGFVYELLNIPYDLYTALFATSRISGWCAHRIEQIISDKKIMRPAYKSIDKNINYIDLDLR
>NC_014614.1|WP_013361456.1|1400907_1401912_+|isocitrate/isopropylmalate-dehydrogenase-family-protein
MYKITVIPGDGIGEEVTQSVIQMVDSLNLPIEWEIVSAGLNTYNNTGELLPESALNSIETNKIVLKGPITTPIGYGFKSINVTLRTKYNLYANIRPVKNLGVIDSKYKNIDLVIFRENTEDLYAGIEEKISDNECHSLKIITKSATLKIAHEAFKYAQSMNKTKVTVVTKANIMKLTDGLFLNTVREVALDYPNIELEELLIDNMCMQLVLNPSRYQIILTSNLYGDILSDLCAGLIGGLGLVPSANIGKDIALFEAVHGSALDIAGANKANPTALALSAAMMLDYIGENLAAKKLKNALNEVLCYEDNFTYDLGGNLSTSDFTQKVIETIQTL
>NC_014614.1|WP_041487134.1|1399583_1400504_-|MoxR-family-ATPase
MAMIEFLKSHNVDEKLIEDLLHFRKFYDNKEENLLRIPKPRFYYYGREVWNMAIAALLEGEHILISGPKATGKNVLADNLACAFNRPAWTVSFHVNTDSSALIGTDTFVDNRVDLRKGSVYQCAENGGFGIFDEINMAKNDAVAVLHSALDHRRIIDVPGYDKIYLNEATRFIGTMNYGYAGTKELNEALVSRFMVIDIPPMTKSKLTKILLSEFPNLNEEYLEQFSGLFLDLQLKSQNSEISTKAVDLRGLIGALRTINRGLEPLLAVKMGILGKTFDEFEKEIISDVIELRIPKSLGKEDIFRL
>NC_014614.1|WP_013361454.1|1397791_1399561_-|nitric-oxide-reductase-activation-protein
MEDNNLLRRESEERFSNVVWTISEKYSIDPDFTLVKFTGDRKIDLYNNTVLGGIYRFFDYEMIYSYINKIKVEISDPKPFFQIAVLVLEENVISNIEISRPAIKKLKEDVYKKILSSFFFNKPKDSADEIRFAYYSRKIGKSPAVNSKVYKLVKEIDKGKSISSTIELIEFLSKIFQDYFHFESYFDNENVAPEEKEALSDNTDTTTKDSPNSYLYDELQEEYVSAEYNPNASKIDPKDGYEFEDNKMNFNINPEVYNKLTDKIEQYYGASIVSFDELRKLEKKICTGMHKGCHIHITDGNFKLSHINNYRVKYVKKQKEKNMIDYNDHYRVYNRNISKLKDIIQRTILRDTEYSKNISDNGMLRGDIIWKIKYLNNSKVFEKEVKEDIGDFAVDILLDSSGSQMERQSRVASQGYVISQALSLVNIPNRVLSFNNFLDFTIIRRFRDYNDPIIKNKNIFEYYATGSNRDGLAIRAVVESLEKRPEEHKILIVLSDGKPNDVKVTKTSSLAFNRDADYKGIKAVKDTAHEVRKARMKGIAVLGVYTGEIEDLDAEKLIYGKDFAYIHSIDRFSEIVGLYLKRQINNMIN
>NC_014614.1|WP_013361453.1|1397472_1397799_+|hypothetical-protein
MYNKNINIKVDYRIIREDGMDQDIIIPIENGLIDLNVSDFKIFDRIQFTHIYAILLRITNQNMTICIHLLKDIDIFSSFVNMDIDLAKKNMVISKNDNHTIINIESVN
>NC_014614.1|WP_013361452.1|1396120_1397302_-|pyridoxal-phosphate-dependent-aminotransferase
MEYSKKYSAIEPSITLAISAKEKKMKSEGIDIIGFSVGEPDFKTPENIRKKAIDSIENDPIGYTAADGMPNLKKSIIKKLKNDNGLDYEPGQIVVSNGAKHSLHNAIEAIVNPGDEIIVPSPYWVSYIELINMSGAKPVIIEGLEENEFKITAADISSVISDKTKAIIINSPSNPTGALYTRDELMKIADLAIKEDLIVISDEIYEKLIYDGEHISIASFSEEIKERTIVINGMSKAYAMTGWRIGYTASNKEIASIMSNMQSHATSNPNTVAQYASIEALEGDTSSIDNMKAEFNLRRDLMVSLVNEIPLLSCKKPKGAFYVMVNISNAIGKKIKNIDINGSMDFANLLLEDAQVAVVPGIAFGVDNYVRLSYATSQEKIKEGLNRIKKCLE
>NC_014614.1|WP_013361463.1|1408635_1409136_-|hypothetical-protein
MNIYQVGSKYDELVGEEGIKIDVTDSGIIMNVKFCNPSSQEIKNISKDKVKLELVKRNGILFFVIKFGNMQWMDAPYTPHLSKNLSHIKEISQNQGFLLNIILSDSRNGEIKSMRAIGVSNSKSVMLKEIIEDELKEEFDIRLYDLNLRKVYSRYSTKDLLKYKLQ
>NC_014614.1|WP_013361464.1|1409217_1409769_-|hypothetical-protein
MIKILNKITKNQTIEANSLFFYSIDKEEVKKKDFKRLDDAIKFFETAGVDARGKLIITFSGYMDNPLEIYQIDEIRDYVKELYQKHSNLFYFLSDYITTNQYIWLCLCNIQETRTLSNSSIKASEINIGENFFLINSVYDSFVNYADSIFDYSYESSLLLSSIGFLDVDKVVFFRKAQRVTRL
>NC_014614.1|WP_013361465.1|1409844_1410381_-|hypothetical-protein
MVNMNSNLNFFDAQVEKNWLNYINLDGITKRYSAKEFYEEMQIDPSERVRAINLINSKVLSTLTVGSLFKGGFTNYFIICDPAYGIICEKCNSYGAIILLLDQNLKSNFENKIFLPATENYINFSTDLYWLILHHYPAIPVNYKTDYWYCPYCNEMHGFEYDSDYGLMYNQDVVKILE
>NC_014614.1|WP_013361466.1|1410585_1411107_+|hypothetical-protein
MNLELNVMEYVELLREVIENEDKESFIDNILSKYEKTKCVFHLTLSLSHKAEIEQVIKKSDNTSLGLYIQRLVQSKGKRDPIIYMKANLSKDYWNKLINNRIENPSKYRMIRIGLALNLDCEEMNNLLKKAGHSFTNNNKDSLLIWFFDKNIYDINFIDEVMIKYDIEPIFNS
>NC_014614.1|WP_013361467.1|1411633_1412584_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MKNLSKISILSLIIFFSFAVISFASTARVDLFVNNAQVHPDSPAYISSTNRTMVPISFVSQAFGFNTTWNGKTQEVKVEADGTVVVLTIGSKYAVVNGQRVEVDPGKGTAPVIRNSRTMVPVSFIASSFGVEVKWTAYPGSGGRVNFISKDFTPPVVPPTNLPTLPNGQKFEEGKVLTPDQLQGALAPLPGNDPSEYNITATNADAVRVTSRLTLYPKDIFVAKAGTSGKDFIFMRASGGGAATMYAYKGDELRSINPVGDNYSGWMMMGEKEDFGKLDYLLFYGTEHKLVPMPTRDMWDGVVYLSIDAAKKAWTN
>NC_014614.1|WP_013361468.1|1412640_1413171_-|hypothetical-protein
MVEVEKLNSTIEEFEGYVSNIKTVSQTLSEIEQLYQQTKINKQNLDNTINSIIKIEDMLQNNLMHYKLDTTKINQELSNSTKEMKAKIDDLYTEIDDKNSFMFHNIIKENKKNMDIVEQNIIQYIDIENKSIKSKITDEIQRIKSENEILSNKLFRNQIVNLGLSIAIIALVLFLK
>NC_014614.1|WP_013361469.1|1413164_1416167_-|RecQ-family-ATP-dependent-DNA-helicase
MNQQVDFYLEQAKLVIEIDGQSHKTDNKTRINDKQRDLYLAKNGIKTIRIDAKDIKRKTEILLKKIHEIKNHLSSHEEKLYKYKFFLELQKDINTFRNYESILKYTAIIRFQILILSLLEKDMLKLNDKNWILNIIERDIKDFEELALNDLFIWLEHLCKLNKLEFNRPIIKIYKSTNEKLVLNKKAINIDFSLFKRWTDENDIDEIERNKIYVRSDYFDENNYFKVSTDKPIKYPLEIGGSSGDLKSLKFILKNIFGFDNFNDGQLPVVVNSLKGEDTLGLLPTGGGKSLIYQFVGLLQPCISFIVVPIKSLMKDQRDGLDKKSIHNTNFINSSQNASEKNKIQNELGSEKYQFVWISPERFQTEEFRLKLQKISNFSNFGLAVIDEVHCLSEWGHDFRTSYLNLAKTIKEYCKGTRILGLTATASVNVLKDIMVEFDIPKENVKTKLSFTREELNFHIINDDGKNKRGKYNELIKLFKKLIHEKNDNKGSGLIFTQFVNNGLLGCFELSESLKKEFKIDVQWYSGSIPKGLKYEMRMDKFQEHQEQVQERFINDEFDWLVATKSFGMGIDKPNIRNTIHFGIPSSLESLYQEAGRAGRDKQKADCYILLSEEFKGKDYFDDIFTGIPKIEDISSKLEEHKYNSRDVFNSLFLFTSSAKDIKDEFNIIRHIFHSFAKPNYEVSISGVEDILKNKKGSEDKFLLKKSDLEKAIYKLSIIGIVKDWIIESWDEHHPQIKVTFEDYSQESIETSLIKYVNKYDKEFNFKNSNKVSSNKYFQIYKRENYSHINKMIHILLEWQYENILYHRLQSIYTVYTQCSKNQSKEEFKAYMEQYFKFDEGVFKFDYISEDPENKDLWFSLIFNEKNEILKKEELEKLDISLRRFLESFKNNTGLNFLSGIIKLLNDDYLNVDGKTRLESSFEEIQNFPEKEKDEIYEKCILISKHLDNKNKNYISELLHLKLNKNPIKTYKAINDEYSLSEVLKESTKRIRAIEGERLW
>NC_014614.1|WP_013361470.1|1416517_1416715_-|hypothetical-protein
MDKKKTLSSSIIGEPENKNVKNLFHENDLILKKPREKKKPYMDNSFMENTVQTILILLIISLFKI
>NC_014614.1|WP_013361471.1|1417337_1417571_-|hypothetical-protein
MLTDIKNEAHLLAIKTVMELIVKFDKILIDAENIVKSSKREEFIVQNPITLHESAYNWAVKLLTEIGDLDTLEKYLT
>NC_014614.1|WP_013361472.1|1417968_1419066_-|hypothetical-protein
MKNEMLVLGLGQAGGNMAEELYKRGFNVIAINSSTDDLDSLDIEKEFKFHIKNGDGTAKNRTLSKQLVKSVAKQIIDLINQKYTSMKYIHIMSSLGGGTGGGSVAGIANMMQSVFTDKHISVSAILPSSFENIRLKNNSLEAFAELAAIQDKIGPFFLLSNENVEKFRVNKMHAEVLDDLVNLRSSNKKGSLDAKELEEIMTSKAILLPCKIEETNEGNKPVLIDCYAKVEGNARLTALSLSKNYRQEEISKFETYKGMSISSVAARLDDKNYAFYCSIDFNDSAIKNINNRLKEEIELMKKQDNKATSLEIETYDLSHSNLKIDTKSNKTTIFNHKNQIQDENIIEDATNNKNKKEMNLDIFFK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

378847 : 391266

Synechococcus_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013360555.1\|378847_380179_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.3e-48	30.9
WP_013360556.1\|380279_380768_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	7.4e-23	42.7
WP_013360557.1\|380848_381544_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.6e-47	43.7
WP_013360558.1\|381546_382890_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.0e-55	33.3
WP_041487073.1\|382929_383976_+	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	1.3e-64	41.4
WP_013360560.1\|383983_384550_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.7e-18	36.4
WP_013360561.1\|384656_386171_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.3e-65	45.2
WP_013360562.1\|386256_391266_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.9e-37	25.4

DBSCAN-SWA_2

478640 : 486187

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157858315.1\|478640_480809_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-11	53.0
WP_013360631.1\|480876_481074_-	CsbD family protein	NA	NA	NA	NA
WP_013360632.1\|481245_482109_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	5.0e-99	63.5
WP_041487078.1\|482535_483636_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.4e-52	38.7
WP_013360634.1\|483715_484393_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-32	36.7
WP_013360635.1\|484511_485729_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.2e-110	51.3
WP_013360636.1\|485725_486187_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-42	61.5

DBSCAN-SWA_3

1635611 : 1693424

Clostridium_phage(23.81%)

tRNA,capsid,terminase,tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013361694.1\|1635611_1636223_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_013361695.1\|1636301_1637966_-	ribonuclease J	NA	NA	NA	NA
WP_013361696.1\|1638113_1638899_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_013361698.1\|1638901_1639336_-	transcriptional repressor	NA	NA	NA	NA
WP_013361699.1\|1639429_1639690_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_013361700.1\|1639705_1640125_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_013361701.1\|1640137_1641088_-	aldo/keto reductase	NA	NA	NA	NA
WP_013361702.1\|1641099_1643268_-	hypothetical protein	NA	NA	NA	NA
WP_173361310.1\|1643272_1643521_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_013361704.1\|1643643_1646292_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.0e-65	34.3
WP_041487150.1\|1646672_1647113_-	Fe-S cluster assembly scaffold protein NifU	A0A2H4N7M4	Lake_Baikal_phage	2.7e-32	58.5
WP_013361707.1\|1647105_1648302_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	2.4e-43	43.1
WP_013361708.1\|1648305_1648752_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_013361709.1\|1648846_1650103_-	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	2.8e-90	43.4
WP_013361710.1\|1650277_1651057_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_013361711.1\|1651216_1653271_-	type I DNA topoisomerase	A0A167R9A0	Powai_lake_megavirus	4.0e-102	41.1
WP_013361712.1\|1653534_1654605_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_157858334.1\|1654655_1655144_-	ATP-binding protein	NA	NA	NA	NA
WP_013361714.1\|1655104_1655554_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013361715.1\|1655666_1656278_-	hypothetical protein	NA	NA	NA	NA
WP_013361716.1\|1656355_1656568_-	hypothetical protein	NA	NA	NA	NA
WP_013361717.1\|1656564_1657626_-	glucosaminidase domain-containing protein	A0A0A7RUS8	Clostridium_phage	1.0e-29	45.9
WP_041487152.1\|1657627_1657999_-	hypothetical protein	NA	NA	NA	NA
WP_013361719.1\|1657998_1658346_-	hypothetical protein	NA	NA	NA	NA
WP_013361720.1\|1658394_1659078_-	hypothetical protein	NA	NA	NA	NA
WP_013361721.1\|1659179_1659353_-	hypothetical protein	NA	NA	NA	NA
WP_013361722.1\|1659355_1659613_-	hypothetical protein	NA	NA	NA	NA
WP_013361723.1\|1659622_1660381_-	hypothetical protein	NA	NA	NA	NA
WP_013361724.1\|1660393_1660963_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_013361725.1\|1660946_1662029_-\|plate	baseplate J/gp47 family protein	S5MBX0	Brevibacillus_phage	2.9e-27	31.7
WP_013361726.1\|1662029_1662389_-	hypothetical protein	NA	NA	NA	NA
WP_013361727.1\|1662385_1662817_-	hypothetical protein	NA	NA	NA	NA
WP_013361728.1\|1662816_1663842_-	hypothetical protein	NA	NA	NA	NA
WP_013361729.1\|1663846_1664500_-	LysM peptidoglycan-binding domain-containing protein	Q94ML9	Bacillus_amyloliquefaciens_phage	4.4e-07	54.2
WP_013361730.1\|1664553_1665453_+	hypothetical protein	NA	NA	NA	NA
WP_013361731.1\|1665473_1667645_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_013361732.1\|1667835_1668312_-	hypothetical protein	NA	NA	NA	NA
WP_049779773.1\|1668351_1668777_-	hypothetical protein	NA	NA	NA	NA
WP_013361734.1\|1668789_1669896_-	hypothetical protein	NA	NA	NA	NA
WP_013361735.1\|1669895_1670414_-	hypothetical protein	NA	NA	NA	NA
WP_013361736.1\|1670413_1670953_-	hypothetical protein	NA	NA	NA	NA
WP_013361737.1\|1670945_1671407_-	hypothetical protein	NA	NA	NA	NA
WP_013361738.1\|1671411_1671801_-	hypothetical protein	NA	NA	NA	NA
WP_013361739.1\|1671801_1672089_-	hypothetical protein	NA	NA	NA	NA
WP_013361740.1\|1672121_1673165_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_013361741.1\|1673178_1673529_-	hypothetical protein	NA	NA	NA	NA
WP_013361742.1\|1673545_1674727_-	hypothetical protein	NA	NA	NA	NA
WP_013361743.1\|1674738_1676838_-	hypothetical protein	NA	NA	NA	NA
WP_013361744.1\|1676860_1678150_-\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	8.4e-175	70.0
WP_013361745.1\|1678139_1679021_-\|terminase	terminase small subunit	A0A0A7RTY1	Clostridium_phage	3.8e-46	41.3
WP_013361746.1\|1679083_1679275_-	hypothetical protein	NA	NA	NA	NA
WP_013361747.1\|1679416_1679899_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013361748.1\|1679938_1680109_-	hypothetical protein	NA	NA	NA	NA
WP_081455104.1\|1680117_1680573_-	DUF1064 domain-containing protein	A0A0R6PIZ9	Moraxella_phage	3.8e-13	44.2
WP_041487154.1\|1680526_1680778_-	hypothetical protein	NA	NA	NA	NA
WP_013361751.1\|1680779_1680932_-	hypothetical protein	NA	NA	NA	NA
WP_013361752.1\|1680924_1681167_-	hypothetical protein	NA	NA	NA	NA
WP_013361753.1\|1681176_1681530_-	dUTP diphosphatase	NA	NA	NA	NA
WP_013361754.1\|1681546_1681963_-	single-stranded DNA-binding protein	E2ELN0	Clostridium_phage	1.9e-35	57.2
WP_013361755.1\|1682007_1683408_-	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	3.0e-109	47.5
WP_013361756.1\|1683473_1683623_-	hypothetical protein	NA	NA	NA	NA
WP_162091644.1\|1683644_1684007_-	hypothetical protein	NA	NA	NA	NA
WP_013361758.1\|1684035_1684365_-	hypothetical protein	NA	NA	NA	NA
WP_013361759.1\|1684364_1684739_-	HNH endonuclease	Q7Y4J8	Streptococcus_phage	1.2e-28	52.1
WP_013361760.1\|1684759_1685569_-	DNA adenine methylase	A0A2H4JFS7	uncultured_Caudovirales_phage	1.3e-77	56.1
WP_013361762.1\|1685719_1686628_-	DUF4373 domain-containing protein	A0A0H4TKJ7	Bacillus_phage	1.2e-31	50.8
WP_013361763.1\|1686647_1687355_-	MBL fold metallo-hydrolase	A0A0H4TGC9	Bacillus_phage	2.1e-55	44.4
WP_013361764.1\|1687366_1688257_-	recombinase RecT	A0A1L2JY28	Aeribacillus_phage	2.3e-54	42.7
WP_013361765.1\|1688258_1690193_-	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	3.5e-100	37.2
WP_013361766.1\|1690224_1690428_-	hypothetical protein	NA	NA	NA	NA
WP_049779775.1\|1690468_1690939_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013361768.1\|1690895_1691138_-	hypothetical protein	NA	NA	NA	NA
WP_013361769.1\|1691138_1691318_-	hypothetical protein	NA	NA	NA	NA
WP_013361770.1\|1691332_1691506_-	hypothetical protein	NA	NA	NA	NA
WP_013361771.1\|1691569_1691776_+	hypothetical protein	NA	NA	NA	NA
WP_013361772.1\|1691853_1692633_-	antA/AntB antirepressor family protein	A0A0A7RUT3	Clostridium_phage	1.2e-27	34.1
WP_013361773.1\|1692661_1692868_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013361774.1\|1693043_1693424_+	helix-turn-helix transcriptional regulator	A0A0A8WE28	Clostridium_phage	1.1e-21	44.3

DBSCAN-SWA_4

2374414 : 2382895

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013362469.1\|2374414_2375596_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	4.0e-30	28.2
WP_013362470.1\|2375588_2376284_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.0e-34	35.1
WP_013362471.1\|2376459_2376903_-	DUF4342 domain-containing protein	NA	NA	NA	NA
WP_013362472.1\|2377024_2378944_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.9e-08	30.4
WP_013362473.1\|2379243_2380791_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.9e-71	40.1
WP_013362474.1\|2380895_2381093_-	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	8.3e-18	64.5
WP_013362475.1\|2381245_2382895_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-18	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage