Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011312 Aliivibrio salmonicida LFI1238 chromosome 1, complete sequence 0 crisprs DinG,csa3,cas3,DEDDh,csx1,RT 0 0 19 0
NC_011315 Aliivibrio salmonicida LFI1238 plasmid pVSAL54, complete sequence 0 crisprs NA 0 0 0 0
NC_011316 Aliivibrio salmonicida LFI1238 plasmid pVSAL43, complete sequence 0 crisprs NA 0 0 0 0
NC_011313 Aliivibrio salmonicida LFI1238 chromosome 2, complete sequence 0 crisprs cas3,csa3,DEDDh,RT 0 0 11 0
NC_011311 Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence 0 crisprs NA 0 0 0 0
NC_011314 Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_011312
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 810 : 61040 53 Sodalis_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_2 145901 : 205308 51 Leptospira_phage(40.0%) transposase,protease NA
DBSCAN-SWA_3 431803 : 496130 48 uncultured_Caudovirales_phage(18.18%) integrase,transposase,tRNA attL 426304:426319|attR 486172:486187
DBSCAN-SWA_4 799057 : 859318 58 Synechococcus_phage(12.5%) transposase,tail,tRNA,capsid,protease,head NA
DBSCAN-SWA_5 1064842 : 1171501 106 Vibrio_phage(59.09%) transposase,tail,portal,tRNA,head,capsid,plate,terminase,integrase attL 1103351:1103410|attR 1156003:1157624
DBSCAN-SWA_6 1214071 : 1271517 47 Acinetobacter_phage(37.5%) transposase,plate,protease NA
DBSCAN-SWA_7 1278702 : 1326340 45 Leptospira_phage(40.0%) plate,transposase NA
DBSCAN-SWA_8 1385663 : 1455925 59 Leptospira_phage(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_9 1485913 : 1542980 58 Leptospira_phage(25.0%) transposase NA
DBSCAN-SWA_10 1553949 : 1601275 46 uncultured_Caudovirales_phage(37.5%) transposase NA
DBSCAN-SWA_11 1684329 : 1737788 55 Leptospira_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1741944 : 1788784 51 Leptospira_phage(66.67%) tRNA,transposase NA
DBSCAN-SWA_13 1802252 : 1875639 51 Leptospira_phage(23.08%) integrase,transposase,tRNA,protease attL 1826967:1826990|attR 1859970:1859993
DBSCAN-SWA_14 2135105 : 2198878 47 Leptospira_phage(33.33%) transposase NA
DBSCAN-SWA_15 2380543 : 2438347 52 Leptospira_phage(33.33%) tRNA,protease,transposase NA
DBSCAN-SWA_16 2684814 : 2695358 12 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_17 2931787 : 2992031 52 Leptospira_phage(53.85%) tRNA,transposase,protease NA
DBSCAN-SWA_18 3060370 : 3115178 44 Feldmannia_species_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_19 3205840 : 3269529 55 uncultured_Mediterranean_phage(20.0%) tRNA,transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_011313
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7795 : 96307 54 Leptospira_phage(36.36%) transposase,protease,tRNA NA
DBSCAN-SWA_2 105882 : 154305 42 Leptospira_phage(33.33%) transposase,integrase attL 118419:118478|attR 155995:156796
DBSCAN-SWA_3 184825 : 232207 47 uncultured_Caudovirales_phage(37.5%) transposase NA
DBSCAN-SWA_4 244431 : 307848 51 Leptospira_phage(62.5%) transposase NA
DBSCAN-SWA_5 471380 : 532173 48 Bacillus_phage(20.0%) transposase,protease NA
DBSCAN-SWA_6 559880 : 568463 6 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_7 681508 : 687830 11 Vibrio_phage(66.67%) integrase attL 677454:677471|attR 698287:698304
DBSCAN-SWA_8 805301 : 866014 58 uncultured_Caudovirales_phage(25.0%) transposase,capsid,protease,tRNA NA
DBSCAN-SWA_9 959425 : 1017321 49 Leptospira_phage(28.57%) transposase NA
DBSCAN-SWA_10 1060537 : 1115951 37 Leptospira_phage(44.44%) transposase,tRNA NA
DBSCAN-SWA_11 1124237 : 1187067 53 Bacillus_virus(28.57%) transposase,protease,tRNA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage