CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015067	Bifidobacterium longum subsp. longum JCM 1217, complete genome	4 crisprs	cas3,c2c9_V-U4,DEDDh,WYL,casR	0	1	0	0

Cas Category Instructions

Results visualization

1. NC_015067

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CRISPR-Cas detection and classification

Crispr_ID: NC_015067_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015067_1

179737-180105

Orphan

Consensus_repeat	Method
CGATGACCCGTGGAATCAACCGCA	CRISPRCasFinder

6 spacers

The CRISPR arrays of NC_015067_1

>merge|NC_015067|1|179737-180105|CRISPRCasFinder
CGACGATCCATGGAATCAGACGCAGTCTCAGGCCGCGGTCTCACCGGCGTCGCAACCGGCCGAAGCCGACCCGTGGAACCAGCCATATCAGCAGTCTCCTCACGATGATCCGTGGAATCAACCGCAGGGGAACCATGCTCAGGCGGCTCCGCAGCCAGGAGACGACCCGTGGAATCAGCCTCAGTCCCAGACTCCGGCTTCTTCGGTTCCTCAGACAGTGTCGGGCAATATGTCGGGCGATGACCCGTGGAACCAGCCCCAATCGGTTCCGCAGCCGGCTGCCGGCGATGACCCGTGGAATCAACCGCAGGCAGTTCCACAATCGGCTCCGCAGGCCACCCCGCACGGTGACCCGTGGAATCAACCGCA

>NC_015067|1|1|179737-180105|CRISPRCasFinder
CGACGATCCATGGAATCAGACGCA	GTCTCAGGCCGCGGTCTCACCGGCGTCGCAACCGGCCGA
AGCCGACCCGTGGAACCAGCCATA	TCAGCAGTCTCCTCA
CGATGATCCGTGGAATCAACCGCA	GGGGAACCATGCTCAGGCGGCTCCGCAGCCAGG
AGACGACCCGTGGAATCAGCCTCA	GTCCCAGACTCCGGCTTCTTCGGTTCCTCAGACAGTGTCGGGCAATATGTCGGG
CGATGACCCGTGGAACCAGCCCCA	ATCGGTTCCGCAGCCGGCTGCCGG
CGATGACCCGTGGAATCAACCGCA	GGCAGTTCCACAATCGGCTCCGCAGGCCACCCCGCA
CGGTGACCCGTGGAATCAACCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015067.1\|WP_007051630.1\|170610_171561_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|274798
NC_015067.1\|WP_007055558.1\|188329_189796_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277329
NC_015067.1\|WP_032740573.1\|173287_173890_+\|Flp-pilus-assembly-protein-TadC	unknown	unknown	unknown
NC_015067.1\|WP_007051613.1\|187374_187995_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007051614.1\|186112_187207_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236329
NC_015067.1\|WP_162094056.1\|182476_182773_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007051627.1\|174174_174462_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NC_015067.1\|WP_007054686.1\|180979_182113_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NC_015067.1\|WP_007051612.1\|188068_188239_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007054687.1\|183000_184284_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NC_015067.1\|WP_007054679.1\|172634_173291_+\|Flp-pilus-assembly-protein-TadB	unknown	unknown	gnl\|CDD\|227300
NC_015067.1\|WP_007051626.1\|174467_174845_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NC_015067.1\|WP_007051616.1\|184644_185409_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_015067.1\|WP_013582333.1\|176648_177248_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015067.1\|WP_007051615.1\|185464_186031_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|235843
NC_015067.1\|WP_013410434.1\|174894_175272_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NC_015067.1\|WP_007051624.1\|175320_176451_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237021
NC_015067.1\|WP_007051631.1\|169662_170388_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|182775
NC_015067.1\|WP_007051621.1\|180380_180983_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_015067.1\|WP_007051629.1\|171567_172635_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|200328

Protein	Function_ID	Function_description	E-value
NC_015067.1\|WP_007051630.1\|170610_171561_+\|P-loop-NTPase	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	9.19902e-11
NC_015067.1\|WP_007055558.1\|188329_189796_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277329	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	9.95244e-33
NC_015067.1\|WP_007051614.1\|186112_187207_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|236329	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NC_015067.1\|WP_007051627.1\|174174_174462_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	3.09108e-14
NC_015067.1\|WP_007054686.1\|180979_182113_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.19515e-84
NC_015067.1\|WP_007054687.1\|183000_184284_+\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	1.02552e-37
NC_015067.1\|WP_007054679.1\|172634_173291_+\|Flp-pilus-assembly-protein-TadB	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	0.00112832
NC_015067.1\|WP_007051626.1\|174467_174845_+\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	7.94662e-07
NC_015067.1\|WP_007051616.1\|184644_185409_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	3.11844e-146
NC_015067.1\|WP_013582333.1\|176648_177248_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.29562e-15
NC_015067.1\|WP_007051615.1\|185464_186031_+\|ACT-domain-containing-protein	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	1.06061e-66
NC_015067.1\|WP_013410434.1\|174894_175272_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	8.00327e-24
NC_015067.1\|WP_007051624.1\|175320_176451_+\|hypothetical-protein	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	4.36051e-31
NC_015067.1\|WP_007051631.1\|169662_170388_+\|DedA-family-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.7339e-45
NC_015067.1\|WP_007051621.1\|180380_180983_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	4.73611e-118
NC_015067.1\|WP_007051629.1\|171567_172635_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	3.56402e-90

>NC_015067.1|WP_013582333.1|176648_177248_-|TetR/AcrR-family-transcriptional-regulator
MSDTLDEKRPTRGDARRDAIVQAARKVCLEKGFSKITVSDIASEVGMTRSLFYHYFEDKEAVADAVLDNVIDEILTTLKQWNQARETGNVNKALDDIVHVLRSLIADESPFSNRMIQDGNAELYIKFIDRAADRIADYIAQTTVRDFEQMHGLPITNVHETFFTLIVGLISLIRSHLNISDRTIKEVMAQTLHIESYVV
>NC_015067.1|WP_007051624.1|175320_176451_+|hypothetical-protein
MSESERNERRRVVAMVGNPTSDKGRGAKVDAQVLGLLEEAGRAHNFDVIDITGTSFDDSLNQARERAHEYDYLVVVGGDGMIALGANAVGCSGKPLGIVATGSGNDFARGLKLPVNRIETAVEGIVGAIVRGSHIDVDMGRVTSLDGGYAVDPSTGEEYEYQESKSAEHPIDRYYAGMLSCGLDASINDRANHSHLPTGTMRYFAAVLVELTHMKRYGYHIKATLADGTTDERDIITPLLTIANSRHIGGGIEVSPYSCFSDGLLDLVWMDHVPNFGECAVAISNAYNGKLLASKVFGWKRIREIEVTRATEGDEPPVLMADGEYIGHLPFRVVAEDCALRVLVPPAVAAREVDSRQEVLNAIARDGRDPVTGQFA
>NC_015067.1|WP_013410434.1|174894_175272_+|flp-pilus-assembly-TadE/G-like-family-protein
MRYEEGSGTMAGAMLVMVVGIALAVAASVGNLMICQNRARSLADLIAFDAAYALWHADIGDPCALAANMAEANGVVLGSCSVRDEDVLVTIKVETMVLVASSVERMARAGPVSCTEGDNYHNNGP
>NC_015067.1|WP_007051626.1|174467_174845_+|pilus-assembly-protein
MKTMTCRWRLARLPPDLCTGSATAEFAIVLPSIIAIAGLILAIGRVVIVSMDCQSAAAAAAREFVVTGDESSARSIAADVAGGEPHVSIAHDGQSTSVTVECSVLPGPLDVTPTRVTGNATAISQ
>NC_015067.1|WP_007051627.1|174174_174462_+|DUF4244-domain-containing-protein
MNTPIPVIVDGQAGIFAHSKARVATLNAKAKERLCLMDARIRTLMAEPEEGAATAEYAVVLVAATGFAAVLVAILKSDAIKTLLTNIIKQALKVG
>NC_015067.1|WP_032740573.1|173287_173890_+|Flp-pilus-assembly-protein-TadC
MSTVWVHAAAGCAAIASWLYKAPSRHDSRLPGEEPVVAHDCGSSWTILILRMLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGSSLARGVPWADAWHAAMAVQHEGAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFMM
>NC_015067.1|WP_007054679.1|172634_173291_+|Flp-pilus-assembly-protein-TadB
MMWCAVLVALAVLIWPGNKSGRLYRLAYRGRAVDSAAINEPRYAGSPRVGVAQVITSAIARLRGGGTLVEAFEEQSSRRFATQRITVERLITVFEQRRLPDESPAQVLEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALPAVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLKGSGL
>NC_015067.1|WP_007051629.1|171567_172635_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MAAVITRADEPGAVPRTVFFGLLNDVASDPQVTDLAVTCDGRVWADRGNGMRETVLRVPFRSPQVVREYAVQLCAQLGRRLDDACPIADAASPDGIRVHAVIAPLVPQGAAISIRFPDRTMASLRHLSQLGVFPAAWLPMFVGLVRRHATVLITGGTGVGKTTLLKALLAQCDVNERIVTVEEVRELGELGRGDHVSLVTREANVEGVGAISLTDLVKATLRMRPDRVVLGECRGAEIVDLLRAFNSGHHGGMTTVHADGVNRVPSRLISLGLLAGVSPQALAMLAAGAFDAVVHLERVNGQRRITQIGELRVAHGELAGTPLAVWNGCHPPRYAAEWGHFIERWGIVPGPSGGG
>NC_015067.1|WP_007051630.1|170610_171561_+|P-loop-NTPase
MNSNTTPRVARRITSPAVAPPGIPLPTDDAPIPAHRYYTPPPRPLASCERQRSGEAPALALTTDTSFHNIVTMTSGHGGVGLSVMASMLAWTLARREHSCALIDADFVAGCLDLLLGVEREPGLRFSQVDAPLGRIEGDAMNHELMMWEGVRVLPYDPWSARQPDWWEVQAAIRALAETNDVVIVDAGQGGLIETVPDLRSGMQVIAAELSVMGLARAKSHRSRLDSWGCEAPHIVGVEPRGAPRGRGHVGIGEAQDYLTATVLGPVKPSVNLCGDVLEGLGIRSVTKGSRKAVSLLADLVEQAIRPVSGASCKDR
>NC_015067.1|WP_007051631.1|169662_170388_+|DedA-family-protein
MGFVNFIIELLKDPRAAIAGWIAMGVAPTLGFIFLIVFIETGVVFFPFLPGDSLLFAAGVFAAPDAATGKAALPLFWLLPVVWCAPIIGDQCNYFIGHFFGRRIIQSGKVKALTPERLAKTEGMIEKWGPLAVFLGRFFPFIRTFMPFISGISGMRWSRFTPFSVLGGLCWSTLFTLLGYFFGNIPAVQDHFELVIVLILLVSLAPTIIGLLKAKFGKKKPAKVTDAQLDVMEDGIKNLDK
>NC_015067.1|WP_007051621.1|180380_180983_+|recombination-protein-RecR
MALAYDGAIQRLIDAFGRLPGIGPKGAQRIAFYMLSAPEDEARDLAEAIEEVKAKIRFCDICGNVCESSPCPVCADPRRDRSVICVVEEPKDVMSIERTREYHGLYHVLGGAINPMANVGPADLRIPGLLKRLEGDEVKEVIMALDPNIEGEATTSYLTQLLRPVGVKVTRLASGLPVGSDLEYADEITLGRALAGRREA
>NC_015067.1|WP_007054686.1|180979_182113_-|class-C-sortase
MALLHRRSTSKRASQKMWENNAAMPDDASANDNVSSARPEPAAFVPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTAARAYNKKLAESGQPILGEAVDPFAAAQGGSQASGEDSASKKDKEYQSLLNTGNGVMGTIKVPKQSINLPFYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMFTRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIVPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLARRHKAARIIRHGAFWPWMRRKGESANDTLA
>NC_015067.1|WP_162094056.1|182476_182773_+|hypothetical-protein
MHKEGICYLDKRGAIAVFVDVGSSSSRWFRRREGRSRVFCFPTKEMNHEERLSKSSFAGLPNVKGAVAEDARIADSPLRSELASVIREKMALSGHLSF
>NC_015067.1|WP_007054687.1|183000_184284_+|ATP-binding-protein
MAVESSEIQRGEYLPRVADGLLTQALQSSGAVQIKGPKWCGKTATAERQSASQVFMQDPDRSATLLALADTKPSLILRGEEPRLIDEWQMAPQLWDAVRFAIDRGRGRGRFILTGSATPQQEPAHSGVGRIARLTMRTMSLFESQESTGVVSLGELFDGNHDVSGFSDFDIENTAFALCRGGWPEAVVESRVNVALRMAADYVEELLDSDINRMDGIKRNKTWMRLIMRSYARNISSQASQSTIAADMQGEPPSEGTLSDYLDALSRACVTEDLPAWNPRLRSKTAVRTSPTRHFSDPSIACAVLHATPEKLLNDFETFGLLFESMCIRDLRVYADALGGDVFHYRDKTGLESDAVIGLHDGRWALIEVKLGEKQVDIAAAHLKKLADRIDQDHEGRPSFLMVLTATAAAYRRDDGVLVVPLATLAP
>NC_015067.1|WP_007051616.1|184644_185409_+|aspartate-kinase
MALIVQKYGGSSVADTESIKRVAKRVVETEKKGNKVAVVVSAMGDTTDDLIDQALSIDSNPPEREMDMLMTAGERISMSLLAMAIHAEGSRAHSFTGQQAGFFTDARYGAAHIKAVRPDRVKNALSLGDIAIVAGFQGINAKGDATTLGRGGSDTSAVALAVALGADICEIYTDVDGIFTADPRIVPSARRIPSIDYESILEMASCGSKVLALRCVEYAQRFNMPLHVRSSFSRRPGTLVVPDGIDPRTLPNLD
>NC_015067.1|WP_007051615.1|185464_186031_+|ACT-domain-containing-protein
MTEEEAKSMGDLFPDLGPEAPVISGIAHDRSEALATVRGVPNEPGMAAKVFTELATAGVNVDMIVQAGASVGTADISFTVPESAVKQVQNTLLDKQEVLGYHSFDVDTNVGKVAVVGVGMKTHAGLAAKFFQALSDEGINVLMISTSEIRIAALVPLDQLNDAVKALHTAYGLDADQIEAVVYGGTGR
>NC_015067.1|WP_007051614.1|186112_187207_-|aspartate-semialdehyde-dehydrogenase
MSEKLKVGILGATGMVGQRFITLLENHPWFEVVTLAASAHSAGKTYAEAVGDRWKMETPMPEYVKNMVVVDGDDAESVASGVDFMFSAVNMPKDQIRAIEERYAKTETPVVSNNSAHRWTPDVPMVVPEINPEHFEVIEHQRKRLGTTRGFIAVKPNCSIQAYTPALAAWKEFEPREVVVSTYQAISGAGKTFKDWPEMVGNIIPFISGEEAKSEKEPLKVFGHVDAAKGEIVPFDGDLKITSQCIRVPVLNGHTATVFLNFGKKATKEELIDRLVNYTSKASELELPHAPKHFIQYLTEDDRPQVKLDVDYEGGMGVSIGRLREDSIFDWKFVGLAHNTLRGAAGGALECAEMLKALGYITKK
>NC_015067.1|WP_007051613.1|187374_187995_+|hypothetical-protein
MSIASVEAQKQLDRIVALGYPDVADISAAAFRSLARPLIGALEHSDLGSNILLVPTRELVSPESLIARTSINRMAGFTTMPPRDIASFLPQDGFMPPEGPFYLVVNPHTGTCYVNREPDVARKLIDSDERLPLTLEEGLAIATQHPEWLLEKNGFNLLGSRSADGRVPSIWMSQNAPRLGAVWPNSRHTWLGNAYCTARRGVSLFR
>NC_015067.1|WP_007051612.1|188068_188239_+|hypothetical-protein
MKVNKDGTFSGSYHDSDMGATGDGYLIGNDVDTLNGKALLNVTSGADKGYTFYDFS
>NC_015067.1|WP_007055558.1|188329_189796_+|metallophosphoesterase-family-protein
MTNLRFREDGSFRVLQMADIQDGPNVLPDTIRLIREAIRKADPDLVVFTGDQIRGYDPAYIDTFLRRRGEEPGARVRAVTEVEAKLRGIKRRARNRVNNRLLAMKSDGSNPDVQQTASTASTTSTLVYSTTSDPQDVPTTLDELMDETRDKVRRTFAGFLGPVIEAEVPFAATYGNHDFQCGILADEQDGIYREFPGCLNPVDSLEPGTFALPIEASDGSGRVAMSVMMVNSGDYAGKPEENDAQYPAYVVNPRGLDLADSDGYGTPSPEAIDWLGAVQSELGERNGDGKPVPAIAFQHIPPQEFYDCLKEVPAWTPNAVEGARTHAGHCYVLNHEICRPGSRLGEAIGCADENVGEVDALREAGGYFALFCGHDHKNAFVGHAHGIDLGYAPTCGFECYGPKSRYRGIRLFEFHESNPAGYVTRMLTWGDLVGRYSSNEVRVWFEDHCVTGAISMRNELRRPQVFAVLSGAMSLGFMAVIRSLVKKR

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Crispr_ID: NC_015067_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015067_2

301823-301908

Orphan

Consensus_repeat	Method
GACAGCTCCCGCCAGCGGGAGCACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015067_2

>merge|NC_015067|2|301823-301908|CRISPRCasFinder
GACAGCTCCCGCCAGCGGGAGCACTTATTTGTAGGGAAATTCTCCAGTTCAAATCCGTTAGACAGCTCCCGCCAGCGGGAGCCTTT

>NC_015067|2|2|301823-301908|CRISPRCasFinder
GACAGCTCCCGCCAGCGGGAGCACTT	ATTTGTAGGGAAATTCTCCAGTTCAAATCCGTTA
GACAGCTCCCGCCAGCGGGAGCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015067.1\|WP_007051529.1\|302022_303087_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_015067.1\|WP_007056503.1\|307476_309546_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
NC_015067.1\|WP_007051530.1\|300227_301727_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NC_015067.1\|WP_007054746.1\|295198_296623_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NC_015067.1\|WP_007054756.1\|312674_315410_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|380147
NC_015067.1\|WP_007051521.1\|315553_317080_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173859
NC_015067.1\|WP_011068473.1\|298357_298657_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_015067.1\|WP_007051535.1\|297342_298191_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349969
NC_015067.1\|WP_007051539.1\|292054_294763_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319774
NC_015067.1\|WP_007051520.1\|317141_317828_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_015067.1\|WP_007051527.1\|305657_307271_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235967
NC_015067.1\|WP_007051536.1\|296619_297249_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NC_015067.1\|WP_007051540.1\|291236_291971_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NC_015067.1\|WP_003828150.1\|303097_303412_+\|DUF2469-domain-containing-protein	unknown	unknown	gnl\|CDD\|313765
NC_015067.1\|WP_013582355.1\|310364_312449_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007054751.1\|298660_300202_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_015067.1\|WP_007051524.1\|309853_310243_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|181719
NC_015067.1\|WP_007051538.1\|294874_295156_+\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224848
NC_015067.1\|WP_007054753.1\|303585_305439_+\|histidine-type-phosphatase	unknown	unknown	gnl\|CDD\|132717
NC_015067.1\|WP_007051542.1\|289323_291003_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
NC_015067.1\|WP_007051529.1\|302022_303087_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.07656e-13
NC_015067.1\|WP_007056503.1\|307476_309546_+\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NC_015067.1\|WP_007051530.1\|300227_301727_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NC_015067.1\|WP_007054746.1\|295198_296623_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	1.22195e-106
NC_015067.1\|WP_007054756.1\|312674_315410_-\|valine--tRNA-ligase	gnl\|CDD\|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
NC_015067.1\|WP_007051521.1\|315553_317080_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173859	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_015067.1\|WP_011068473.1\|298357_298657_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.21183e-29
NC_015067.1\|WP_007051535.1\|297342_298191_+\|RNA-methyltransferase	gnl\|CDD\|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.64827e-41
NC_015067.1\|WP_007051539.1\|292054_294763_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	1.26045e-151
NC_015067.1\|WP_007051520.1\|317141_317828_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.51632e-96
NC_015067.1\|WP_007051527.1\|305657_307271_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|235967	PRK07208, PRK07208, hypothetical protein; Provisional.	0
NC_015067.1\|WP_007051536.1\|296619_297249_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	0.00689965
NC_015067.1\|WP_007051540.1\|291236_291971_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	2.56303e-80
NC_015067.1\|WP_003828150.1\|303097_303412_+\|DUF2469-domain-containing-protein	gnl\|CDD\|313765	pfam10611, DUF2469, Protein of unknown function (DUF2469). Member proteins often found in Actinomycetes clustered with signal peptidase and/or RNAse-HII.	1.30549e-58
NC_015067.1\|WP_007054751.1\|298660_300202_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_015067.1\|WP_007051524.1\|309853_310243_+\|chorismate-mutase	gnl\|CDD\|181719	PRK09239, PRK09239, chorismate mutase; Provisional.	9.5939e-49
NC_015067.1\|WP_007051538.1\|294874_295156_+\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|224848	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown].	2.43596e-30
NC_015067.1\|WP_007054753.1\|303585_305439_+\|histidine-type-phosphatase	gnl\|CDD\|132717	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.	2.78266e-06
NC_015067.1\|WP_007051542.1\|289323_291003_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>NC_015067.1|WP_007051530.1|300227_301727_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MAEKLMKYADATKKYDVVFGLETHVELSTNTKLFCPAHIEFGGEPNTELTPVSLGLPGSLPVINKTAVDYAIKLGLALHCEIAEWSQFARKNYFYPDMPRDYQISQYDKPTNGNGYLDVELEDGTVFRVPIERAHIEDDAGKNTHVGGADGRIEGADHSLVDYNRAGVPLIEIVTKPIEGAGDRAPEIAGAYVRAIRDIVRALNISHARMEQGNMRADVNVSLRPSPDAPYGTRSETKNVNSFRGIEKTIQYEIRRQAARLDDGKEILQETRHWDEATQTTAGGRLKSDADDYRYFPDPDLVMLHITKEHIEEMKAQMPEMPRERRNRLKSEWGLSDLQMRDILNADALDLIEETVKAGAKAAGARKWWLGELSREANAKGVSLEELPITPADVAEVEKLIASGKLNDKLAKQTVEGVLKGEGTPDEVVKKHDYKIVEDNGAIEAAVDAAFEANPDVVEKLKSGNMKPMGVIIGAVMKATRGQADAKAVTKVVMGKIKG
>NC_015067.1|WP_007054751.1|298660_300202_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSNETATLVKLSAAEQAAAVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRDSTSIPEGPRPMVAAAREGAKRDLKGMKVGLIKELGGDGFQPGVEARFNEAVDKLKEMGAEVVEVSVPHIGYSLGAYYIIMPSEVSSNLARYDGMRYGLRVMPPTGVPQTAANMMAYTREAGFGDEVKRRIILGTYALSAGYYDAWYGSAQKVRTLIIEDFKKAFEQVDVLVAPTSPSTAFKFGEKMDDPLAMYMNDIATIPANLAGVPAMSIPAGLSDDGLPVGFQFIAPQQRDEVMYKPAAALEAALEDSWNGPIWNDLKTPWLDGLGK
>NC_015067.1|WP_011068473.1|298357_298657_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPTFSREEIVHLGDLARIALTDEEITRLQGELNVIADSINKVQEVASDDVPPTANPVPLEAYLRPDVAETPLTQEEALAGGPKTEAGMFVAPRILGSEE
>NC_015067.1|WP_007051535.1|297342_298191_+|RNA-methyltransferase
MHAPNQISLAAKASGEPEFREIGLGPWSETHPGEPRPDDPTSSNYDGRFDSVLLNDGDRRNVLDRYRYWTVAAIKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELYQHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDACDARIKELQAARVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSINAGAAAAVAMHAWIAQHAVSGV
>NC_015067.1|WP_007051536.1|296619_297249_+|orotate-phosphoribosyltransferase
MTESGFRPTGTPDLAVAKSHNDFAMLEPREQLATLLKEHVVGRPFSELAAVTFDHRAATVMGHVLIDALEDAGYSIDDFDAVGALTAASVPMVSAMIQAAASRGEDLDGFVMDFVYPSIKGPSIEGRRVVLLDAWLSEKSYVQTSSLVTLRNGNELSLDFGIVEQLGAKVVAIASLVGGGAKDINVVNPSTGDEQTLPFIQVFDESELR
>NC_015067.1|WP_007054746.1|295198_296623_+|DNA-recombination-protein-RmuC
MFEQIGTVIIVIVVLVVGAGLGLFAGFVLGRHKGQEMARGVKSEELEEAKTSLENARFENAELSARNAAAQAQIEGVNQQLAFAKSQLAQAQQAEQIRIQQERERAAAEAERKRQADAQAAEAKRAEQEARLKEQSKVLEALAPVAKNLDTLQNKVTQIEEGRKREMGALGAQLKGLNDQQARLDKETSSLSAALRNNKVRGAWGEAQLKNIVESAGLLEHVDFDTQVVVTDADGRTLRPDMIVHLPGGKTIPIDAKVPYADYQRACEIPDTASPEDIARRDDLLRSHAKALREHVRALGEKAYWNAFDVAPDFVVAFIPNEALLQAALEADPTLMDDAFSRKVALTSPVTLWAVLKSVAYAWQQQSLTDDAKQLFDLSRELYERFSTLGDYAIKLGTQITKTVSAYNKFASSLERRVLPTARKLQKIEPTKIIEEVPIIESDKGNVSELSAPEVVPADEGDTHLTASGDSLES
>NC_015067.1|WP_007051538.1|294874_295156_+|metal-sensitive-transcriptional-regulator
MHGYDEDKAKVIARLRRIEGQVRAITQMVEDDKYCIDILTQISASNSALKSVALLLLDDHLNHCVRQASIQGGEVADEKLAEASAAIARLVKS
>NC_015067.1|WP_007051539.1|292054_294763_-|HAD-IC-family-P-type-ATPase
MELSIFSAATALIAAAALTWLVLRFFFGTQKATAGAMDASGERQSATITVKGGYSPAVISMRTGTPITLTFDRQETGECTSHVVFADLGLDAMLPGNATTDVELPALPAGEYPFACGMNMVHGLLRVEGEESKDGADKDGLRPRADGSAEAEGVSPSDLRVGAPVVDAAEAERREAAERANEIKALTKLVIVGAVLTLPVFAVTMLHMANPALVPHWMVNPWLQAILITPVMFYCGRPIHTVGFPALAHRSPDMNSLVSLGTSAAYLYSLVTCIAPWVFPEGSREPYFESVGVVITLVLVGRLLEAKAREGTGKAVQSLIRLRPRTAHKLNATSADNVDGIEWRNPAHFTDTDIDAIVTGDLLIVKNGERVPTDGVIVAGEARIDESMITGESKPVSKTAGDPVTGATVLLKGDCVMRATQVGADTVLSQIAAMVARAQATKAPVQQLADKIARYFVPAVMIIAIWTFAIWVSLGPAPQLAHALVTAVSVLIIACPCALGLATPLSVTVSLGLGATNGVLVTSAKALEQARRIGTVVFDKTGTITRGVVDAAADWDKPSYEQDTVKEGSREAVAALRARGIRTVMLSGDKAEVAGRIAREVGIDTVICEVKPDGKAYWIAKLQRERDEAAAKSAYGTSRTAAQSRTLIAMVGDGINDAPALAQADLGIAIGTGTDVAMQSADVTLMSGDLRGVIKTINLSNATMRNIRENLGWAFGYNVIGIPVAAGVLYPFTGWLLSPMIAGLAMALSSVCLVLNANRLHGANINVGAADGPAGSGSSTADVESAGSAESANAANITGSATSNAPHEPTVIIDDRTTLNQTNHVSDQSNNPTNKENTMDTGMHMHHTAPADGETATDPVCGMTVAVNADAITREYEGKSYYFCGEHCATNFMKAPQVFLEQ
>NC_015067.1|WP_007051540.1|291236_291971_+|aquaporin-family-protein
MDYPLFTKLAAEFFGTAILMIFGNGSVANVELKNTKGHHAGWLNIAMGYGFGVMFPVLMFGSVSGAHINPAMTIAQAVNGLFPWSDVLPYIVAQLLGALLGQLIVYITYYPHYKETEDAEAILGTFCTTDADNQKVNYFLNEMFGTLVLVFGALCCLSLAWGKQDYAAASIVVGFIVWGLVTSMGGPTGPGLNPARDLMPRLLHAILPIPHKGSSRWGEAWIPVVAPIVGAIIGAWLFVFFFAS
>NC_015067.1|WP_007051542.1|289323_291003_+|phosphoenolpyruvate--protein-phosphotransferase
MRTIQGVSVSAGIAIGTVRVLAAVDYAVERRLIDDPQAEMDRFRAARDTAVAQLKQLRDNVAAEFGENKAELFDAHRLMLQDPDYAECVEGLIAQDKVNAEFAVKSAAEQFAAMFAAMDSSTMQARAADVKDVSRRVMNVLQGKRDSTAQDGSVQGDAVQNGIVQNGIAQNGESHIIFAEDLAPSDTAQLDRAKVLGLVTAKGSANSHTAILARTMGLPAITGIGDAFDPADDGHVAVIDGTSGAVFVDPDEATLTEYRRRKAEAEEHLSLLRKLKGKPTETKSGQRVHLYANISRPSDAAAVLANDAEGIGLFRSEFLYLEREDWPTEEFQFDAYGQVAQEMGDRPVIIRTLDIGADKQVDYFNLSHEDNPALGYRAIRICLTRPEIFKVQLRALLRASAYGNIAIMLPMITSVQEVRDAKRILEEAKSELRGERIDFNESIQIGVMIETPASVIMADELAAEVDFFSIGTNDLTQYTLACDRQNPSLERFADPHSPAVLRMIQMTIEAAHRHGIWCGICGELGADLSLTDTFLRLGIDELSVSPTSVLPLRNVIRNH
>NC_015067.1|WP_007051529.1|302022_303087_+|GNAT-family-N-acetyltransferase
MTATNETLSMATEAQLKRDLPQSIVIPPIRGEMVHLRPATVEDLPRLDELDAFYGASKITGKDAVTERAIVHTWVRRSQAWEAGQAPAESGVGDPESRRTIAWAVLTDADHDDDGQLDAASTDNVIGMIFLIDIDGWSKSARIQIILGREYRGRGYSRDAMPRVMTYGFAPEPAGLGMHRIWVSVPEKNSRSISVYQSLGFVPSGTSRDALWDAENNKYQDLIVMDTLADEYDPIRSLDAFGMHLIEDNPGVKEALSAREHSIAIQQNKPEPEPAQRGEAAGATTSDVQSQAQTPAAAQPVEPQAEHHDDTQKNTRHSLEEESNWPYGQAERKPSKEAWWRTLGRGRKRDTESE
>NC_015067.1|WP_003828150.1|303097_303412_+|DUF2469-domain-containing-protein
MSAEDLDNYETDAELALYREYRDVIKLFTYVVETERRFYLANKVDFNVRSAGQDVYFDVQLTDAWVWDVYRSSRFVKSVRIVTFKDVNVEEVQKTDIDIPDDIH
>NC_015067.1|WP_007054753.1|303585_305439_+|histidine-type-phosphatase
MQQGLKGSIAGVVAAATLLAGGILTVPHAMALEADGQYYSSKQPYVAPSEATTASYSQAPEGYETVYTESMARHGSRGLSSYKYDALLMKMAEAAEADNGFKSDAIKSEFMKNLKAITAANVENGYGMLTGQGADQHQGIGARAYERNKTLFDNAAKDGGKIAYQSSGEARATESGENFARGFNAASNNKLANSTVTPADPAGTGEAAAFDKTPNTLYFHKSENPDGTEKTGEAKQRADDYQNFVENDAIIAGAEQTIAENEDVKTASHDLLSQIFTDDFLAKLADGTYAWYNTVDGTKGGEANCAPGADPSKDADACGAAKKKIASEYDAAMDLYNLYIIAADMENENTGSHTFDFNQYFQGEQADDAKLFAWALDAEDFYEKGPSYAGQDETYTIAQPLLDDFFSSIDERVNGGSTVATFRFAHAETMMPFAALLGLPGSTQQAAASTTDVYTYANNEWRGESVTPMAANVQWDVAVKSGNDPKTGRAYTPLVRMLYNEQEIAFRSECTPIADGSTWYKLTELKSCLASDHQTLGDDAHLTDDSTTQPGTGPNTGEGTSTTPNNNGAGTHQPSNTQANGTENELSRTGVAVTGVAGIMMLLALAGISLNLWKVRR
>NC_015067.1|WP_007051527.1|305657_307271_+|NAD(P)/FAD-dependent-oxidoreductase
MTDKQSVVIIGGGPAGLTAAWELIKDGGADKYDVTVLEGTREFGGISRTVKHNGNRMDIGGHRFFSKDERIMDWWKTVLPLQGAPSYDDKKLGRDHDMEPGGPDPETEDKVMLKRHRVSRIFWNRHFFDYPISLSPNTLKAMGFKLTMVAGFSYLKSMFHKLPEDNLENFYINRFGRKLYSMFFEGYTEKLWGRHPSQISADWGAQRVKGLSIMGVLKNAFQKLLPKKRSNAEVETSLIEEFWYPKYGPGQLWETVESNCEAAGVKVLTDARVVEVRQTDGAVSSVVYEDSEGNRTELSGDQFISSMPVKDLVNAIDAAGADPEAVDSKPAPADMTEVANGLPYRDFVTVGLLVKHLKLKNTTSIPTLGNPPIVPDCWIYVQDPGYKVGRLQIFNNWSPYLVKDVDDTVWIGLEYFCEEGDSFWNMSEEDVTKFAISELTRMRVINGPDEVIDSHRERVRKAYPAYFDTYEHMDELIEYLDGFGNLYCVGRNGQHRYNNMDHSMATAMEAVGNIKTGKTSKKNVWSVNTEKSYHEEK
>NC_015067.1|WP_007056503.1|307476_309546_+|transcription-termination-factor-Rho
MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAAKTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRTRRKAADDAASEPRAARRRRDDDQPDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERHEDVEVPLIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDDHEFVRRNRRDRSDRNDRDTRNDRSDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGDRRNQRQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAVERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQANTGNAVNGN
>NC_015067.1|WP_007051524.1|309853_310243_+|chorismate-mutase
MSETSSDWQRTTIDSAQAAAHPETAQAVARIKALRQTIDNIDSAVIALLAERFKATSQVGVLKANAGFAPEDTKREDYQIERLHRIAIDAGLDPEIAEMYREFVVTEAKKRHQRIADAGGDPGVLDVFA
>NC_015067.1|WP_013582355.1|310364_312449_+|hypothetical-protein
MRCGAALVSCALCVASILGGAWMSRPTPVDYGPVLATASDMYAVTDAEGEPVRWYVVGKGGAGNGASADSGNSGSTDTDSANSNSGTSKVSRIPASAATLPWKVSVTYSLDGPNVEANEVAGASGLIGVYIDIKPQTKEANRTIPVVAFTVPTQVADDVSADNSITVTTQGSNTVVAAAGKAATGLEFSCYMNAKDFSMSSVALAVLPSNSSSPAVGANPDAANAANAAAQPAADTDVAQLTASAATLVDSLTDAGSGEQQQLIEQLQTLRDNERALNKSVVAERETAHKRTFEDYMAAYVGSYTTHLSGSIGTSTQLPALMGTAGELSGDTPLAQAVLDLANAVNNVSAAHQHAGAVDALDEVIRRIQQQGTTGLVDDLIAEASEEATQGSKQYADGQSQLSAAMIPYSMKYTDVYTANLSALTGGTSSGATAYESQAIAETNGSDELADAQSKVDAAMSTLATASEHTGKATALRQIVLRFSDQFEGGASSASGSDGDGSSGDVSSDPVTEAQALTGLVDSQSQSFYGKTRVAQAKRKADAARKQAKAAQQQQSQHSKASLVDDTMSMSAGDVMNYAGGLTSAIGGGDKSDSSKSAGSGTNDSAKSSDTGDSGNGKASNASDSGNNLDTAPVLFGFGTGGTLFKHDMNALINETVKISDAGTLLAQAVAQLDSPNTQQKTAETRYLIVIPTV
>NC_015067.1|WP_007054756.1|312674_315410_-|valine--tRNA-ligase
MTEGKSIINANLTPLPDKVGVDGLEDKWRTVWDEDGTYKFRNTRDRKAVYSIDTPPPTVSGSLHVGHVFSYTHTDVIARYKRMRGYDVFYPMGWDDNGLPTERRVQNYYGVRVDVSLPYDPDFKPPFEGTDGKKIDAKDQVPISRKNFIELCERLTAQDEKLFEALWRKLGLSIDWSQTYHTIGQHPQRVAQKAFLRNLARGEAYQQDAPGLWDVTFQTAVAQAELESREYPGFYHKVAFRFEDGTPIYIETTRPELLAACTSLIANPNDERYKQYFGQYVYSPLFKVKVPILAHPAAEMDKGAGIAMCCTFGDVTDVEWWRDLKLPTRPIIQRNGRIVMDTPDWIEDPAGREVFAETAGKTTFSARKIIVDKLRESGDLDGEPTPTKRMTNFYEKGDKPLEIVTSRQWYLKNGGTDAKLNAELIERGKELEFHPDFMRVRYENWVHGLNGDWLISRQRFFGVPFPLWYPVNASGEPDYDHPITPSEDRLPIDPTIDVPEGYDESQRDVPGGFTAEKDIMDTWATSSLTPQIVTHWAEPDEASKALFASTFPMDLRPQGQDIIRTWLFSTVDRAHLENKCLPWAHATLSGWILDPDHKKMSKSKGNVVVPNEPIEKFGADAVRYWAAAARLGLDATYDIGQMKIGRRLAIKLLNATKFALAIGREDENHHVGAAAEAAWNPADVTEPLDRAAMAKLALVVRQATEALESYEHSKALEVIESYFWQFCDDYIELVKNRAYGTPDEHGNVPSEKAVKSARTALGLGLDAFARLLAPYLPYATEEVWSWMHAGSGSVHRAAWPVVDPYVEAATGASPELLTWAGKAVEQLRKIKSEAKVSMKTPILSVALSAASEGVEAIHAALGDIAQAGRVVGKFDLVAKHAEESAAEGTPETEVAVEASELGEPPAKKPKH
>NC_015067.1|WP_007051521.1|315553_317080_-|ABC-transporter-substrate-binding-protein
MQHSKRDNTWSKWGIFLGVAVALGALVVVGWTFMQNRFQPGSSLDADVTIGIDDMPQSLDIRSDSSAAAERLLVDNVYETLVTVDQDNKLQPGLATSWKTSDDGLTVTLTLQSGVTFSNGHTLDASDAVWSLQQNVTNKVADVDELGDLASVANPNATTVVITLAKPNPTLLRALSGRLGIVYDSESSSADYQRKAIGSGPFTVADFQPGHSLKLARSDTYHGTKAASNVVEFMQYSDADALSKALTDGSLDMAAPVSASTATGLNGKDGLTVKEGATTDKVLLAYNNGTDSLLSDEQARKAFRYQIDAAGIASAQPDAAGALGGPISLLEPGYEDLTGLYPHDENQAGQMFSYFGAQYLTTVNLVVPEEYRSLAETIKQQIERQPRPTVNLEVLSDEDYAKRIKDGKWELTVMSMDGTDDAGIFADPDSMFHYDHTEAQQAYADARAATNDADYEARMKAYARLISEDAASDWLYTRKCFTVASTKVSGYPTSMINRRMPLAGLTVK
>NC_015067.1|WP_007051520.1|317141_317828_-|endonuclease-III
MRETKSARLTRMHDEYDILRQVIPAPACALHFSNPLELLIATVLSAQTTDKRVNTVTPELFATYPTARDLAAANPAQVEDIIHPLGFYRSKTQHLIGLATALDERFGGVVPRTMDELTSLPGVGRKTANVVLGNAFDIPGFPVDTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPPEEWTNLSHRLILFGRATCHARTPDCANCPLSDTCPSYAPPAGKSTSKR

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Crispr_ID: NC_015067_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015067_3

1467665-1467745

Orphan

Consensus_repeat	Method
CGCACAGTGAAACCGTCTCATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015067_3

>merge|NC_015067|3|1467665-1467745|CRISPRCasFinder
CGCACAGTGAAACCGTCTCATATGTCGCCGCCGCGCGGGCAGTCTCTACCTGCAGCCACGCACAGTGAAGCCGTCTCATAT

>NC_015067|3|3|1467665-1467745|CRISPRCasFinder
CGCACAGTGAAACCGTCTCATAT	GTCGCCGCCGCGCGGGCAGTCTCTACCTGCAGCCA
CGCACAGTGAAGCCGTCTCATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015067.1\|WP_007052568.1\|1472015_1473725_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_015067.1\|WP_007057264.1\|1456802_1457747_+\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|185699
NC_015067.1\|WP_007054437.1\|1455721_1456678_+\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|185699
NC_015067.1\|WP_007057260.1\|1458332_1459085_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NC_015067.1\|WP_074710142.1\|1454438_1455497_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NC_015067.1\|WP_007052567.1\|1473728_1474898_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_015067.1\|WP_007057255.1\|1471444_1471966_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240032
NC_015067.1\|WP_013582813.1\|1459259_1460813_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_015067.1\|WP_007052563.1\|1479412_1480225_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|179028
NC_015067.1\|WP_007055264.1\|1458012_1458333_-\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_013582814.1\|1462048_1465726_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NC_015067.1\|WP_007052575.1\|1465786_1467391_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NC_015067.1\|WP_007057390.1\|1476159_1477794_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173884
NC_015067.1\|WP_007057958.1\|1478073_1479357_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NC_015067.1\|WP_013410747.1\|1460934_1461930_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379214
NC_015067.1\|WP_007057256.1\|1468645_1469497_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_013582815.1\|1469800_1471396_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NC_015067.1\|WP_007052566.1\|1474899_1475991_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_015067.1\|WP_007052562.1\|1480562_1481687_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_015067.1\|WP_007054439.1\|1453889_1454399_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976

Protein	Function_ID	Function_description	E-value
NC_015067.1\|WP_007052568.1\|1472015_1473725_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_015067.1\|WP_007052562.1\|1480562_1481687_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.7177e-37
NC_015067.1\|WP_007054437.1\|1455721_1456678_+\|aldose-1-epimerase-family-protein	gnl\|CDD\|185699	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	4.73886e-125
NC_015067.1\|WP_007057260.1\|1458332_1459085_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	8.36421e-71
NC_015067.1\|WP_074710142.1\|1454438_1455497_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	6.74807e-162
NC_015067.1\|WP_007052567.1\|1473728_1474898_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.94335e-82
NC_015067.1\|WP_007057255.1\|1471444_1471966_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.36956e-55
NC_015067.1\|WP_013582813.1\|1459259_1460813_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	1.4264e-148
NC_015067.1\|WP_007052563.1\|1479412_1480225_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|179028	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.	3.28784e-125
NC_015067.1\|WP_013582814.1\|1462048_1465726_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_015067.1\|WP_007052575.1\|1465786_1467391_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.11058e-130
NC_015067.1\|WP_007057390.1\|1476159_1477794_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173884	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_015067.1\|WP_007057958.1\|1478073_1479357_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	7.95845e-146
NC_015067.1\|WP_013410747.1\|1460934_1461930_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	7.48505e-09
NC_015067.1\|WP_007057264.1\|1456802_1457747_+\|aldose-1-epimerase-family-protein	gnl\|CDD\|185699	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	5.80439e-131
NC_015067.1\|WP_013582815.1\|1469800_1471396_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	2.4976e-108
NC_015067.1\|WP_007052566.1\|1474899_1475991_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.77009e-104
NC_015067.1\|WP_007054439.1\|1453889_1454399_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.03772e-74

>NC_015067.1|WP_007052575.1|1465786_1467391_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MRDVELDIMSRPPEHNTTNLDLDRMNLMLDILGHPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDDDFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGLWDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPILAEAAERNHAMLVRDGYEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALAALAASEVVIPVNGPLDGDLVAEALSSVKIPGRIEQIRTSPTIILDGGHNVNAAEALRKAIEESYDFKQLVGVVAMMRDKQVEEYLGVLEPILSSVVVTENSWRERVMPADELEKIAVDVFGRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICGSFVTAGDARLMLEEHASPTMRQAMAVHQPAVDPDDSDQPADKAEDEAADNLEDSVSPDDFDVFDVLGLGKEQAGDAGTGTASADTDSTDTASADTDDSADAR
>NC_015067.1|WP_013582814.1|1462048_1465726_-|chromosome-segregation-protein-SMC
MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTSMEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCRLLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHRKRKERALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRADAIQISVRDAQARLYAEDAQRSMSRRDTVRQELGAVRNQLAVAQRELAQVKVRIEQVEALSSESSPAIAKANQYWHEFSQTRERLNALAQLAEERSRSLAGQIVTNFGEDPGMLVKRAEELESQAAAQTKAVADARIALDKATEERADDEKKLASVRQTLTELRKTAQERDAQIARLRELIAREESAVQLATSRAKDYASQRDSLTSQRDDAQQQLDALRSEADSIADDDGAALDAARATLAECRERLNERADKQREIQSKIISLKSKADALADTLDSRNASGSLERDTDVASLGRLTDFIHVAEGWGEAVAHALDQYASAIVVPAAGNMLHALERAREDKLGKAVVLTASIAGDPATEPGTESEESSAENAGAAPQSGNALAALVTANPDAENPAQAEAVVRTVRLLLADVAAAGTADEAQQIVAFGEAMRAVTKNGETFTHGVAAVGGSSISQSDLSLAARRDKALAQVKQLTAQDGGMAEQVAEAKTKRDEAARLVDQESAKRTEARLKAQQAEKSLKSATDRVASFTRQLEQLDRKITETQENCNEHQLKLDDLNRALASARQSTAEHADFDELDERERTLERGLNLTREHEVAAKIAWTEASRKGESLSRQAGLLRDNAKEAAERRARIEALNDRRREQAAHLQGVADDARAVAAMVEHTLHDVAAKRDELQAAASSHDEELKALRAQRNQIEPKVTDLTGREHALDVNRERLAAESGQLMQKVSDELGLTLEELVGDYGPEQPVPVLDDEGNPVPLDETEAEAGTEEGETGGEAGTNGDSALFKTVPYNRQEQKKRLDKARRDLAALGKINPLATEEFEALEERNKYLNDQRNDVVKSRDDLMQLIKDLDSTMVQVFKSAFDDTAEAFEQMFATLFPGGTGRLRLENPEDMLTTGVLVEASPAGKRVKQLSLLSGGERSLTALALLFAIFTARPSPFYVMDEVEAALDDVNLTRLINAFNELRAHAQLIIITHQQRTMSIADALYGVTMRADGVTAVVSQKLER
>NC_015067.1|WP_013410747.1|1460934_1461930_+|GNAT-family-N-acetyltransferase
MITLEKVDGATLEAEAEKAGITLPIEQTKVWSGFQADIDGRTPWGDYLIKRDGELVAVISFIDFETHGYHYLRSMHGPAWAAKPTEAEEREVVDAIVDTVKKADKNIAFLRIDTWFADGTEKVLSTVPYDQTVVIDVTGGDDEILARMKRRGRRDVRKSLRECPAEVADETDKALADFSEYYDVMVETGQRDGFTPAPMSDYSDMIGALGADHCRVFAARIEDRVVAWSIVTVNGTHAVRYYAGMRNEVMRLHVTDKLLYSECCILGSQGITEYDLMGIGSDFAPSLKGLNEFKCKFTEEITPVAPARDVPIKKVFYKTLQTVQGVRKALR
>NC_015067.1|WP_013582813.1|1459259_1460813_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MALTLASAADLLKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTLLCCKGRFKAEYLNGIDEAGLAAYVAETEYSAATAAPGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL
>NC_015067.1|WP_007057260.1|1458332_1459085_-|sigma-70-family-RNA-polymerase-sigma-factor
MAAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAWMTTIERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSDGLKSAEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKRELASYAKERGYVTGSSAGSPSAKLSENVGRIADSGHNESSEQTVGSNGDTQAVVRHSHATGARTPQQSSKLSGKEI
>NC_015067.1|WP_007055264.1|1458012_1458333_-|hypothetical-protein
MNDQPVERTRHISITRTAADGTVSQTEVHITAVHHRSVDTGSAAASVQTDVHIVTEGDCFDPRTCCDEREQALIAALRAYLRPDVAPECLMARLKATLDHCCGEDK
>NC_015067.1|WP_007057264.1|1456802_1457747_+|aldose-1-epimerase-family-protein
MALKPRTGNQYVISSGEWSAVVTELGASLRELKWRGEDLIVPFDPNKVIPCCNGWVLAPYPNRVTNGQYSFDGEDYQMPIDEFDRQSSLHGYAYRYMWELVDLQESHVTLSWRSPDIAGYPFDITITATYALDENGLTETFTVHNNDSVKAPWAFGIHPWLANGKHATGQAITADNEPCRLELHCDTHVTVDEHLLPTGEEPVSGIFDLRDNPTLEGRGFDDAWTDITNRGEDGSTSAAFTRPDGIKVTLTGDKTINSWQVCTGNEIGEKARQAGVAVEPMTAYADAFRTGKDLVVLEPGDDYTTVVTFHAEQI
>NC_015067.1|WP_007054437.1|1455721_1456678_+|aldose-1-epimerase-family-protein
MTSKTPRTGNQYSIHYGDYSAVICELGAKIRRFDYQGKEIFCPFGVNDLTPTCNGYVLAPWPNRIENGEYDFNGKHYCAPVNEYHPAPRNNANHGYAYHYMWKLESLTDSAVTLSLRFPNLDGYPFDVTVTVTYELGDNGMTATVNARNDGDEPAPWALGLHPWLANGKQGATAAERDADSAACHLQIKAASHVTVNEALIPTGTEPVTGIYDLNDGPTLEGRAFDDAWVDVERAADGTTTTTFTRPDGIEVKIIGDETINAWQCYTATGAPFAEHPYGIAVEPMTAPANAFRTGDHLVTLAPNGDYTTVVRYEVVQK
>NC_015067.1|WP_074710142.1|1454438_1455497_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTADSCNPCLTLENTIDVQEVPMTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVEDLAGQGAVFVQELAEIPDAAAQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKVHREVLRFVREGYEIVYIGHKGHDEAVGVVGESPEHVHLIEHESDVDSLDFAPDTKLVLLSQTTLSVDETADTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANSSNSVRLMEVAQEGLGERGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDALQNLGFTGMKSVETIKENMHFVLPAELRRKK
>NC_015067.1|WP_007054439.1|1453889_1454399_+|Cys-tRNA(Pro)-deacylase
MAKKSKHDKGAGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFKTLMADTGAERVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVGVNPQDLLKVLNAVAAPIGTW
>NC_015067.1|WP_007057256.1|1468645_1469497_+|hypothetical-protein
MYDGIPSLYANTAYWDGLTPPERTLHIARALAQEHPQWVFGGLVAVSAYGFEHQWHLHDDCITIVTSDHGSRQCHQRLRHVYMPDMNNPKTHYEASGLSLISPARTLVEAAIDLDFRFALPIFDSALAKGITKEEIAADCVQWRIDYARVFRLLRYANERSENGGESLARGTIIEDRFLTPRIQVTVTDPQTNTEYRVDFVWKLDDGRVIVAEYDGTQKYVDPAMTDNRSIQEVVAKERARDEGLKRAGATEIVHFTYADVIERTPLRVKLIKAGVPQVETSA
>NC_015067.1|WP_013582815.1|1469800_1471396_+|aminopeptidase-P-family-protein
MGEVITAKDKEYEAEERATAPGANQSMSDRVNNRSLRPQSAAFKEFMKSGWADDDPEINPLESSKFTPARLEALGKAFPGERLVIPAGQPKVRNNDCDYMFRPDTTFAYYTGLGSDYEAGAVLVLNPVDPDSPEAAAGKTHTPELFVAPRADNSTEDFFMSAHYGEYWVGPRAGLKEMQAMTGIETHDIAQLADALSKDVGAEAGAVRVRVVSETDPQITSMVESIREANGFADPDKNSASDDKLHEFAAEARMVKDGYEINEMRKAVDATKHGFDRLLSALPAALDKPRSERILEGAFNAVSRELGNAVGYDSIVASGPHAPILHWMRNTGVVKTGDMLLVDAGVEVDSLYTADITRTFPTNGKFTDFQKRLYQAVLDSQQAGFEAAKPGATYSDIHHACMRVIAERLHDWGLLPVSVEESLSPQGQQHRRWLACGVAHHLGLDVHDCAQARFESYQGAPIRPGMIFTIEPGLYFREDDLLIPPEYRGIGIRIEDDVLMTENGPEWISAGIPKQIDDVEAWMAEQAAQAK
>NC_015067.1|WP_007057255.1|1471444_1471966_+|NUDIX-domain-containing-protein
MSTPEFVLELRKKIGHDLLWLNGVTGCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPADTVVREIKEETGIDAIVTDLVAVTSSNKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVGDEESLSVGWFDLDDLPTPLAASTSERLELFHTYIENKKHGDAHALFQFDGQQY
>NC_015067.1|WP_007052568.1|1472015_1473725_-|ABC-transporter-ATP-binding-protein
MSENNKNLADIKDLSVSFMTDAGSIKAVEDVNFTIPRKTVVGVVGESGSGKSVTARSIIKLLPETATTSGAVYLSKRDGSDSLDVLSLSGEQLREVRGSEAAMVFQEPNSVLNPVYTIGWQIEEGLRAHGMKDKKELRAKAINILKKVGIPDAETRVDYYPHQFSGGQKQRIVIAMALVLNPGLILADEPTTALDVTVQAEILDLLRLARDEFDASVLIITHNMGVIADIADQVVVMYRGHVVEQGDVEQIFYHPKDDYTKRLLGAVPRIGQKLVVRDREGKPIERKADWREQPIAVEAKNLTITYPGHLMQPDFKAVDGANFTIHRSEVLGLVGESGSGKSTTGRAIAGLQKVSGGSLNVLGIEMNGVKERDFKPKRADIGFVFQDPGSSFNPLMTIAENVAEPLLVHHKYGSVADAKNYVGDLLEMVQLPRAYMNRFPHELSGGQRQRASLARGLALKPSLLIADEPTSALDVSVQAKVLELFKRLQAEIGFACLFITHDLAVVDMLADRIMVMHKGQIVEHGDADQIMQHPENPYTKKLLASLPVPDPREQQQHRAHLHELLAQEA
>NC_015067.1|WP_007052567.1|1473728_1474898_-|ABC-transporter-permease
MTTASQDKITVPGDDRLTKLNVSTKTPFWTKIPIIKELRVAVGWQKGMLITGLAITAFFLLVALFAPLIAPYGHAQIKAADGTSFPAQAAPSAEHIWGTTAAGFDVFSRVVWGARTAVIAIVVAVLLSIFAGVLLGLVSGYYGGWVDRILVMIADAVYSFPSLLLAILMAIMISHGQSGLWSGILASGISITVVYIPQYFRTIRAEVIRIKESAYVESARVVGASTWRIMTKHLFKNSTRTLPVILTLNSSEAILTLAGLGFLGFGIEPTAAAEWGYDLNRSVSDVTAGIWWTAVFPGIAIVLIVLGITLVGESLNDLADPRLRARKSAGEVVGSIEDTSVDPNEKPTARNEVIAELDANVDPPATVTDHDPTIVASEWTGEGKPEGKE
>NC_015067.1|WP_007052566.1|1474899_1475991_-|ABC-transporter-permease
MSDSAIATSSTTPAKAKTKKNRLSGSFFRFVLTRFLLIIPTVFILVTIVFFVMRATGDPISAALGGRLTPAELQQRIHAAGYDRPLIVQYVDYLGGLLHGDLGTTLTDNQPVISILTHYGAATFELAFLALIVALIVGIGLGRLAARKRDRAADAGIRTFAILCYATPVFFLGLVLKLIFAVWLNILPASGRSDLNSEMQFTRLVSPTGFYIIDAIQLGDMNVLVDVLRHAVLPAVALGLLTAGVFIRLVRTNVISTYNSGYVEAARSRGVSEKRLLNKHAWRPALIPIITVMGMQIALMLAGAVLTETTFEWKGLGFMLSQYLKARDFVAVQGIVILIAIIVAVVNFLVDVIAALIDPRVRY
>NC_015067.1|WP_007057390.1|1476159_1477794_-|peptide-ABC-transporter-substrate-binding-protein
MNSKKILAAAVSVAAIASLTACGGVKDDTAAGADSGNAITIGTTDKITSLDPAGSYDNGSYAVQIQVFPFLYAQDYNTSELSPDIAADDGTWNDDGTEFTVKLKDGLKFANGNDLTASDVKFSYDRIKKINDPNGPSSLLANVESVTAKDDTTVVFKDSVPFDVTLKQVMSSPAGPIVDEDTFDADKLADADTIVSKKAFAGPYTLTAFKINESAAYAKNDSYKGLTPAKNSVVQVKYFADASNLKMAVQQGQVDVAYRSLSPTDIEDLSKDSKVKVVKGPGGEERFIAFNFKIQPYGESQPDADANKAKAVRQAVANLIDREELSTKVYKGTYTPMYSFIPDGLAGHDDTLKSAYGDGNGKPSTEKAKKVLADAGVTTPVDLKLQYNNDHYGSVSADEYAALKSQLEAGGLFKVDMQSTEWTQYNKDRVVTDDSDGVYPVYQLGWFPDYSDPDNYLSPFFRDGNFVNNGYSNKEVNDLIVKQAGEKDESARGDILKQIQKLETEDLSTIPLLQGAQVAVTGTSVKGVTLDASFRFRYASVTKG
>NC_015067.1|WP_007057958.1|1478073_1479357_-|N-acetylglucosamine-6-phosphate-deacetylase
MSDRNEIVSRVTAALEGKPAPVAIRNARKVDARGERRGYWVVSDAAGVIVAAGTGEETFEHYCRTVGLDPADRNAVIDAEGRILTPGYVDIHAHGAWEKSFDDGPDGIDVARAGHAVHGTTRQVLSLITNPVDVICRNIRTVRAKMESGRPDILGCHLEGPFLALARKGAHDPECLKDPVPDIVDKMLDASGADPASGKLGCIRQITIAPELPHGISAIRQFAAAGVVPAVGHCDADYETAKAGFDAGAGIMTHMFNAMNGLHHREPGPIPAAVEDPRVTIELINDGFHVQDPMVSLSFRFAPHRTAFVTDAMAATDCPDGAYKLGALDVNVVDGHARLVSNGAIAGSTLLLEVAVRRAVDELGFSPVDAVEAATLTPAKAFGFDRPNPVTGAPIGLIAPGFAADFNLADPADWTVEQVWCAGRKLK
>NC_015067.1|WP_007052563.1|1479412_1480225_-|glucosamine-6-phosphate-deaminase
MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVSGVRGFALDEYIGLPLTHPESYHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVALAGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGTRVKTLAEQTRIDNARFFDNDINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGVSAFCPASALQMHPHATIIVDEEAASRLRHKDYYRYAYTHKPAWQGI
>NC_015067.1|WP_007052562.1|1480562_1481687_+|ROK-family-transcriptional-regulator
MSYLGLNTTTDDHAAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRVAVSDVVGRMLEEGLLRETGQAPSGGKGKRGTLLSIDIDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKMLGMSDGEVIGIGVASPGVVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVRIERGIGSAILLSDTPVIGELHAAGELGHISIDLDGPPCPCGKHGCLETMISGTALKKQLSAADVEQHQNILARAGRYLGQALAMPVGLLDMADVCVYGQPNIINATFIGAAQQYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAVVFQHLAK

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Crispr_ID: NC_015067_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015067_4

1966971-1967056

Orphan

Consensus_repeat	Method
GGCCCTGAGCGTGCGGGCGCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015067_4

>merge|NC_015067|4|1966971-1967056|CRISPRCasFinder
GGCCCTGAGCGTGCGGGCGCGGAATCGCATTTGAAGCGGCATTGCCGCCATTGGCACCGGCGCCGCCCTGAGCGTGCGGGCGCGGA

>NC_015067|4|4|1966971-1967056|CRISPRCasFinder
GGCCCTGAGCGTGCGGGCGCGGA	ATCGCATTTGAAGCGGCATTGCCGCCATTGGCACCGGCGC
CGCCCTGAGCGTGCGGGCGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015067.1\|WP_007053048.1\|1978957_1979953_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_015067.1\|WP_016507739.1\|1977014_1977326_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007056739.1\|1956677_1956830_-\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_013582922.1\|1969136_1969865_+\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_013582925.1\|1977322_1978234_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NC_015067.1\|WP_007053813.1\|1967861_1968929_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_015067.1\|WP_004268639.1\|1959059_1959149_-\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NC_015067.1\|WP_007052308.1\|1964040_1964514_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_015067.1\|WP_161388827.1\|1957151_1958078_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NC_015067.1\|WP_008783615.1\|1971481_1973050_-\|alpha-N-arabinofuranosidase	unknown	unknown	gnl\|CDD\|226064
NC_015067.1\|WP_007055364.1\|1961653_1962778_-\|FAD-synthase	unknown	unknown	gnl\|CDD\|235536
NC_015067.1\|WP_007052314.1\|1958208_1958907_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_015067.1\|WP_013582924.1\|1974866_1977047_-\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|379601
NC_015067.1\|WP_007055359.1\|1960100_1961639_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_015067.1\|WP_007055304.1\|1973859_1974660_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NC_015067.1\|WP_013582923.1\|1969905_1970949_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_015067.1\|WP_007055328.1\|1962875_1964039_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_015067.1\|WP_007053049.1\|1978315_1978858_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_015067.1\|WP_007052313.1\|1959340_1959973_-\|hypothetical-protein	unknown	unknown	unknown
NC_015067.1\|WP_007055323.1\|1954902_1956519_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235798

Protein	Function_ID	Function_description	E-value
NC_015067.1\|WP_007053048.1\|1978957_1979953_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	0
NC_015067.1\|WP_007053813.1\|1967861_1968929_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	2.23491e-150
NC_015067.1\|WP_007052314.1\|1958208_1958907_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	3.30832e-120
NC_015067.1\|WP_007055323.1\|1954902_1956519_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	1.47009e-81
NC_015067.1\|WP_007052308.1\|1964040_1964514_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.2318e-44
NC_015067.1\|WP_161388827.1\|1957151_1958078_+\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	3.77084e-62
NC_015067.1\|WP_007055364.1\|1961653_1962778_-\|FAD-synthase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	5.18065e-81
NC_015067.1\|WP_013582924.1\|1974866_1977047_-\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	0
NC_015067.1\|WP_007055359.1\|1960100_1961639_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_015067.1\|WP_007055304.1\|1973859_1974660_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	3.46877e-29
NC_015067.1\|WP_008783615.1\|1971481_1973050_-\|alpha-N-arabinofuranosidase	gnl\|CDD\|226064	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].	0
NC_015067.1\|WP_007055328.1\|1962875_1964039_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	8.62604e-102
NC_015067.1\|WP_007053049.1\|1978315_1978858_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.51666e-56
NC_015067.1\|WP_013582925.1\|1977322_1978234_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	3.30969e-94
NC_015067.1\|WP_013582923.1\|1969905_1970949_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.41657e-80

>NC_015067.1|WP_007052308.1|1964040_1964514_-|30S-ribosome-binding-factor-RbfA
MAGTNPRAARIAALIQRVVASSIERELHDKRLASITVTEVRVTNDLQIAKVYWTQLGHEGHEEGERKRAQQALDQAKGHLRSLVGHKAGLRLTPQLQFVFDEVPGEAHEIEDILAVAKKRDEELARARATAQYAGDADPYKHDDEPSDDFEDDSDEE
>NC_015067.1|WP_007055328.1|1962875_1964039_-|tRNA-pseudouridine(55)-synthase-TruB
MLHTTPSGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVAHDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQDLLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRSGFVAGEQAAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRRTRVGRFALPDDASGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLDTPEGLAGDERRNWLLDHALTMEQAARGAMPALDITPEEASELRFGRRIERTISEPTAAIVPQTHDVAAIIERANAHQAKPVTVFPLA
>NC_015067.1|WP_007055364.1|1961653_1962778_-|FAD-synthase
MDITHLTPDAEGSIEWPSFSNDKKAVVTLGAFDGMHLGHQAVIKRVVELAHQHDAFSVVILFDPRPAFVHGWVISHHGEEPAVQNVDAEALTSVDDRLHRMEQFGVDHVLVVHYTLAFAAMSYIFFLGRLTGKLGMRTLVLGQDAAMGKGREGDVKHIANLAAATGVFELDVVDDRGPGEVRIPRDFKPEAPSEWGEPVDPLANATKAERRAWSKKNQAKAMRAWSSTNVRYLLAHGRIQDANAILGAPHSIEGEVVHGEERGRTIGFPTANLGSDIAGYIPVDGVYAGWLVDGENRWPAAISIGTKPTFSEKTGLNERVVEAYCITEEWIDLYDHKVRVEFVGFLRPQVKFDGPDQLVDELKRNVEETKRLTA
>NC_015067.1|WP_007055359.1|1960100_1961639_+|DNA-repair-protein-RadA
MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVTVANNARSAARPITEVGTESVERLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAGDSTFRGAGQRSAQQSGRAQGNASNTVPMRGNASSTHANTVLYISGEESQAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGSTQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANAAPVEGTCVTFTLDGHRSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQAKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAVIPPLRKPVHVEGLQLVESNTLSDALDALGVRK
>NC_015067.1|WP_007052313.1|1959340_1959973_-|hypothetical-protein
MTNSENSSTTQSHGKLIAVVVAAAVVIILAVLSAFVWPGWAIQKNDGTSTTTQNSQQKTESSEPTKPTIDATALPDDASELLKAMPGSVLNYARTKADASTTWNSASPLEEYTLTYSTGDAAKDVTLVAAQWSSADNAKTQYDALVAAQTGDESASGNVKVSGNVTGAYVVKADASNSKNAVAIWQNDTVVFQATGTKEAVDRFYQKFPM
>NC_015067.1|WP_004268639.1|1959059_1959149_-|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMSKKKHRKLLRKTRHQRK
>NC_015067.1|WP_007052314.1|1958208_1958907_+|ribose-5-phosphate-isomerase-RpiA
MDKAQQDALKKAAGIEAAKLVENGMIAGLGTGSTVKFLVDELGRRHQEEGLEFTGVTTSRRTQAQAESYGIKIVDIDDVDHIDVTIDGADEVDKNFNGIKGGGAALLWEKIVATNSNQIVWIVDESKVVDTIGKFPLPVEVIPFGAGQVIKKFEARGYKPVLRLDADGKEVRTDENNFVVDLHLERIDHPQELAEDLINTVGVVEHGLFLNMVDKVIVGDPNGPRVMTNANK
>NC_015067.1|WP_161388827.1|1957151_1958078_+|ribonuclease-HI
MTITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRSGARDGYLPIEGWQSLLGSEYAHGTDVPPDVQLVLDGKADAASLRKPAAATDQTDAARPETKSSSPLAAQSTQPVQSTQPVQSTQPVQSTQPVPPAKPSGLTVSGTLTFSPAPKTSPYFNGQPMPIKGSIEIEGYVDGDGNLTITNAPFVRH
>NC_015067.1|WP_007056739.1|1956677_1956830_-|hypothetical-protein
MLIAGNSKTVALGPGGMALAPGLPLGLGWFIRRRLGLDASDILDRKLGLK
>NC_015067.1|WP_007055323.1|1954902_1956519_+|FAD-dependent-oxidoreductase
MSISTPNAISTPSTSPTITTDALIIGFGKGGKTLAAKLSAAGRKVVVAEASADMYGGTCINIGCLPSKSLILSAEQARRDGANSTPETREAAFEAAIKEKRRVTSMLRDKNYHKLADQDNITVITGRAHFTGPHSVEIATAEGPVAVTASKIFINTGATPRIPDIPGIHTTPGVYTSTGLMDLDDMPQRLVIIGSGFIGLEFASMFADFGTAVTVLQHNAEFLPREDADVAAAIRAQLEAQGVKFLFNADTKAIAPAADGGVRLSVAVKGMTRGASQACDSTPAGTGNAHTDITGATDTTTTTSPTSNPTDHATMSHVQTKPSDDGEPRFAEPAEARFCLTTDAVLVATGRTPNVEGLHLEAAGVELTERGAVKVDELLRTTAADIWALGDVNGGPQHTYISLDDYRVVWSQLNGSDRPYTVKDRKHVPSSTFLATPYSRVGLNEREAKAAGLDYVVKRLPVAAVPKAQVMRRPDGLMKAIVERNTGRILGAMLLSVESHEVINIVKLAMDLDAPASTLRDMVFTHPTIAEALNDLFA
>NC_015067.1|WP_007053813.1|1967861_1968929_-|transcription-termination/antitermination-protein-NusA
MELDLTGIHKLAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTEDNPYPVPKLGEEYDDTPRDFGRLAAATARQVITQLFRRAEDEKVFGAFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKVAAEKAAQAAAEAAAPEAE
>NC_015067.1|WP_013582922.1|1969136_1969865_+|hypothetical-protein
MTPCEKAMTLANYATHPAEGTPLLEQYATGLAAPLAWIDVAGYCSGRFAEGTLRDAQTKQWMAFLADKFGQSAPEVTPARLDGVTSANVDRSVLDAMAVAEDRAGFAIEVLAARGQTAGATLALSDMHKTAGQQLVALANGNFDDSGAQSSSSGQSDPRQKVYAIDQLLANPTTIADKASGQTVPTAAAIEMDCARAQIKAVTESKSSTESDMLLILAALAAKHAYTAFQLGYPATDAELFE
>NC_015067.1|WP_013582923.1|1969905_1970949_-|LacI-family-DNA-binding-transcriptional-regulator
MGNRVTIKDVAREANVSIKTVSNVLNDTGSMRPDTRRRVEEVMRKLGYTVNISARAMRSGGTKLIGLNIFDFSQPFVPFFTDKVIEYAKERHYGVVINTYGSDGEGLVASVDEFYRLGTEGWILFVMSPLADEGAVLEQPYPIVTTGDHLAYGKSDWITMPNIESISTVVGRFLDEGAQTVALMGVLPELVDEAVLRRQTEGTQALRAQGYVKAFEERGLSVNWRYVIPAESMNQREGMRVTKAMLDKLPCPDVVVCLNDAIALGAIHELQRCGLHVPDDVQVVGFDNVPEAEYSVPALTTIDPHIDDYAKHAVDMLIDRIEGYSGPARTYTTDFTLVERASTRLAH
>NC_015067.1|WP_008783615.1|1971481_1973050_-|alpha-N-arabinofuranosidase
MSEHSHDNKPGELEESRLVVDNDFEVAPVNDRLFGSFVEHLGRCVYDGIYEPGHPEADEDGFRKDVIELVKELGATTIRYPGGNFVSGYRWEDGVGPRDERPRRLDLAWHSTETNQFGLHEMAKWLEKTGGNELMEAVNLGTRGLEEALDLLEYANIPGGTKLSEERRANGADQPFGIKMWCLGNEMDGPWQTGHKSAEDYGTLAASVAAGMRAIDPNVELVVCGSSSHVMDTFGKWEETVLEKTFDNVNFVSCHAYYHPELQPDGTRDMKSFLASGVDMDGFINDVAAAIDATKARLKSKHDVFISFDEWNVWYLNEEPSKNPEGIGNWPVAPRLLEDVYSAADAVVFGDLMITLLKNADRVHAASLAQLVNVIAPIMTEPGGPAWRQTTFYPFSLTAKLAKGGTVLEPKLASGTYETDKYGEVPTINSVAVRGEDGTISVFVVNRSMEAANDFAIKLPEGFALSAVEAQTLHEDDLLAKNTLEDQNRVVLHPNTTITSDADTGTVRVTLPPVSWTAVHVK
>NC_015067.1|WP_007055304.1|1973859_1974660_-|transglutaminase-family-protein
MKKLVFDYEMRLSFSAPVTDHRFQLRCIPSTGPRQQVIDVEVKIQPETELETTIDSFDSVVMTGFIPEPHDIFSYSVTGIAFVDNAHIHKEAYKPLYRFNSALTIPGPNVEAMIAVCRERLAALPSDATPVQQAAEVMDEVYKAFVYTPGSTTIRTTAEQALAQRKGVCQDYAHVMLSVCRHVGLTARYIAGLLGGEGATHAWVEVYQDGRWVGLDPTHNRLVDDSYITIAHGRDYRDCMLDIGIFSGYNVQQSQWVNASVHEQVA
>NC_015067.1|WP_013582924.1|1974866_1977047_-|circularly-permuted-type-2-ATP-grasp-protein
MIESAARRLAHELVNRREAINRELSRNGVRFGIYKNGEYHDRLFPYDPVPRIIESDEYDELEKGLKQRVNALNAYLKDIYSDKAIIHDGVVPEEYVYTSAGYFPQVNGVTPPGGIFAHIAGEDLVQGEDGRWWVLEDNLRIPSGASYPLFVRDIERRISPRLFRDVRIRDNREYPRLLRKAMDFVSTEGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKVYFLDYAGKRHRVGVVYRRLSDEFLDPFAFNPDSVIGVPGILSAYRAGNVAIVNAPGNGAADDKAIYYFVPQMIKYYLGEEPILNNAPTYMPMFEADRKEVLNRMGELVIKDVAEAGGYGVVFGSSLDAAAREELANRIKEEPRRFIAQEVIQFRDIDVVDPKTGEMSPRKCDLRAFVVTGKNTHVWYSGLTRYSSVPGQMIVNSSQGGGFKDTWVLAPESGVEHEYGAETQVANLLSQSRHHSLSLVTASKADNLYWLGRYTERAFTTLNQFFPFYDRVMDTDVDAFRPFAHALDLPEDFEDFDGFVNSFLYDGSNPDSVRSAVTSAFNNAVILRPELSSRLLQYVELAMTNITDAAKYAADAEDIYKQRDITDDMLAFWGGIENSPVDPTLKAFIFIGKYLERIDLYTRFGLTMEDLEAPLKKLAAYSMTLDGMPLPSCFADGLSWLVGQLPSRGYQEVADLLKKYLDDYSGRVSALAIKDMGSLSSMNMDAKRP
>NC_015067.1|WP_016507739.1|1977014_1977326_+|hypothetical-protein
MGQSACCGFDHRACSLLWRLLWLQAVRRFERTLTPQAVTGFDGFNLRRTRFNKRARMLQAGHFAGRVHLDDRTHLADHTHLADRTHLDDRTRLADRTRYNEWL
>NC_015067.1|WP_013582925.1|1977322_1978234_+|tRNA-pseudouridine(38-40)-synthase-TruA
MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDTGVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDARFSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNPGGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLVGSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAPQGLTLEHIAYPADDQLAARAEAIRAVRTL
>NC_015067.1|WP_007053049.1|1978315_1978858_-|50S-ribosomal-protein-L17
MPTPKKGPRLASSPAHERLMLANMATSLFQNGRITTTLPKAKRLRPLAERLITFAKRGDLHSRRRVMRVIRNKSVVHILFTQIAEQMEQREGGYTRIVKIAPRVGDAAPAAVIELVTEPVAKKAVVKEAEAAAKVAEEEAPAVEAEATEAAEAVEAPVEETAAAEAEAPAEEAADAEKAE
>NC_015067.1|WP_007053048.1|1978957_1979953_-|DNA-directed-RNA-polymerase-subunit-alpha
MLIAQRPTLTEESLNPQRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGALHEFTTLPGVQEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGKGEAVAGDITPPAGVTIANPEQHIATLADDGELEIEFTVERGRGYVPAQMNKQDNDEIGRIPVDSIYSPVLKVSYKVEATRVEQRTDFDKLILDVETKPAISPRDAVASAGSTLVELFGLCRELNAQAEGVEVGPAPVAEETNPEMAVPIEDLNLTQRSYNCLKREGIHTIGELVSHTEQDLLDIRNFGMKSIDEVKEKLQTLGLSLKSSPMAFDTNNLEGGTFFSPEDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015067_1	1.5\|179998\|24\|NC_015067\|CRISPRCasFinder	179998-180021	24	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	98015-98038	3	0.875
NC_015067_1	1.5\|179998\|24\|NC_015067\|CRISPRCasFinder	179998-180021	24	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1789555-1789578	4	0.833

1. spacer 1.5|179998|24|NC_015067|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

atcggttccgcagccggctgccgg	CRISPR spacer
atcggttccgcagcgggcagccgt	Protospacer
************** *** ****

2. spacer 1.5|179998|24|NC_015067|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.833

atcggttccgcagccggctgccgg	CRISPR spacer
gtcggttccgccgccggctgcctc	Protospacer
.********** **********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage