CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	0 crisprs	csa3	0	1
NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	10 crisprs	csa3,WYL,cas3,DinG,DEDDh,RT,cas4	5	4
NC_015313	Pseudonocardia dioxanivorans CB1190 plasmid pPSED03, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

93250 : 119886

Mycobacterium_phage(33.33%)

integrase,transposase

attL 115729:115747|attR 121704:121722

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013678750.1\|93250_93541_+\|transposase	transposase	NA	NA	NA	NA
WP_013678751.1\|93537_94428_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	1.8e-19	27.2
WP_013678752.1\|94532_94709_+	hypothetical protein	NA	NA	NA	NA
WP_013678753.1\|95455_96754_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_083845521.1\|96813_97875_-	AMP-binding protein	A0A1V0SBX8	Catovirus	2.0e-12	32.1
WP_013678754.1\|98120_99746_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_158511367.1\|99796_99967_-	hypothetical protein	NA	NA	NA	NA
WP_083845522.1\|100005_101148_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_013678755.1\|101356_102130_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_049803824.1\|102185_103358_+	CoA transferase	NA	NA	NA	NA
WP_013678757.1\|103877_104399_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_143771205.1\|104607_104982_-	hypothetical protein	A0A0M5M147	Mycobacterium_phage	7.4e-07	46.2
WP_013678758.1\|105440_105689_-	hypothetical protein	NA	NA	NA	NA
WP_013678761.1\|109020_110250_-	CoA transferase	NA	NA	NA	NA
WP_013678762.1\|110246_111305_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_158511368.1\|111399_111900_-	CoA transferase	NA	NA	NA	NA
WP_083845524.1\|111877_112549_-	CoA transferase	NA	NA	NA	NA
WP_041763336.1\|112726_113056_-	hypothetical protein	NA	NA	NA	NA
WP_041763338.1\|113076_113526_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_158511369.1\|113719_114565_+\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	1.4e-16	37.8
WP_013678763.1\|114671_116084_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	7.9e-94	45.6
115729:115747	attL	NA	NA	NA	NA
WP_013678764.1\|116325_117927_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_049803818.1\|117956_118418_-	hypothetical protein	NA	NA	NA	NA
WP_041763341.1\|118998_119886_-\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	3.3e-37	35.8
121704:121722	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015312

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CRISPR-Cas detection and classification

Crispr_ID: NC_015312_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_1

842912-843105

Orphan

Consensus_repeat	Method
GCTCGCCGCGGTTCCGGGCGTCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_015312_1

>merge|NC_015312|1|842912-843105|CRISPRCasFinder
GCTCCCGGCGGTGCCCGGCGTCGACACCGGACCCGTCGGCGCGGCAGGCTCGCTCGCCGCGGTTCCGGGCGTCGTTGTCGAGCCGGGCGTCGTCGAGCCGGGCGTCGTCGAGCCGGGCGTCGCCGCGGTTCCGGGCGTCGCCGCGGGGCCGGGCGTCGTTGCAGAGCCCTGGGTCGGCGCGGCTCCGGGCGGCG

>NC_015312|1|1|842912-843105|CRISPRCasFinder
GCTCCCGGCGGTGCCCGGCGTCG	ACACCGGACCCGTCGGCGCGGCAGGCTC
GCTCGCCGCGGTTCCGGGCGTCG	TTGTCGAGCCGGGCGTCGTCGAGCC
GGGCGTCGTCGAGCCGGGCGTCG	CCGCGGTTCCGGGCGTCGCCGCGGGGCCGGGCGTCGTTGCAGAGCCCTG
GGTCGGCGCGGCTCCGGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013672984.1\|836905_838369_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_015312.1\|WP_013672979.1\|831538_833197_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372323
NC_015312.1\|WP_013672987.1\|841109_842120_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NC_015312.1\|WP_013672992.1\|846093_846522_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NC_015312.1\|WP_013672998.1\|850541_851210_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_015312.1\|WP_013672993.1\|846539_847214_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NC_015312.1\|WP_013672982.1\|835262_836156_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NC_015312.1\|WP_013672991.1\|845220_846087_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NC_015312.1\|WP_013672994.1\|847324_847684_-\|FmdB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225210
NC_015312.1\|WP_158511290.1\|839195_840359_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_015312.1\|WP_013672989.1\|843578_843743_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_143770779.1\|833371_834019_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_015312.1\|WP_013672990.1\|844244_845150_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_015312.1\|WP_013672996.1\|848402_849299_+\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
NC_015312.1\|WP_013672981.1\|834041_835196_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NC_015312.1\|WP_041760415.1\|830354_831260_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182137
NC_015312.1\|WP_013672995.1\|847763_848366_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NC_015312.1\|WP_013672983.1\|836207_836909_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_015312.1\|WP_013672997.1\|849305_850532_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_015312.1\|WP_013672986.1\|840355_840937_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013672984.1\|836905_838369_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.08721e-51
NC_015312.1\|WP_013672979.1\|831538_833197_-\|hypothetical-protein	gnl\|CDD\|372323	pfam12810, Gly_rich, Glycine rich protein. This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant.	1.11013e-05
NC_015312.1\|WP_013672987.1\|841109_842120_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.11151e-81
NC_015312.1\|WP_013672992.1\|846093_846522_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	2.8449e-45
NC_015312.1\|WP_013672993.1\|846539_847214_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.08576e-14
NC_015312.1\|WP_013672982.1\|835262_836156_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	5.86028e-63
NC_015312.1\|WP_013672991.1\|845220_846087_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.51587e-26
NC_015312.1\|WP_013672994.1\|847324_847684_-\|FmdB-family-transcriptional-regulator	gnl\|CDD\|225210	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown].	9.96106e-28
NC_015312.1\|WP_158511290.1\|839195_840359_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.74024e-79
NC_015312.1\|WP_013672998.1\|850541_851210_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.10038e-31
NC_015312.1\|WP_143770779.1\|833371_834019_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.43341e-22
NC_015312.1\|WP_013672990.1\|844244_845150_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.55577e-32
NC_015312.1\|WP_013672996.1\|848402_849299_+\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	6.58289e-130
NC_015312.1\|WP_013672981.1\|834041_835196_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.68616e-77
NC_015312.1\|WP_041760415.1\|830354_831260_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182137	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional.	1.90049e-52
NC_015312.1\|WP_013672995.1\|847763_848366_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	1.5852e-40
NC_015312.1\|WP_013672983.1\|836207_836909_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.48045e-90
NC_015312.1\|WP_013672997.1\|849305_850532_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.28364e-111
NC_015312.1\|WP_013672986.1\|840355_840937_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	3.48466e-51

>NC_015312.1|WP_013672987.1|841109_842120_-|NADP-dependent-oxidoreductase
MEEPSVITSTTTGRAVRFESFGGPEALSVREVPVPQPGPGQIRVRVTAAGLNPMDWFMTSDAETAARFGLSLPCGFGTDYAGIVDQVGDGVSEFAVGDRVFGGVLSRAVADYVVVDEAGPIAVGGEAHRTPAGVDDHTAATLAIAGRTAAAALAVVHPGPGDTVLIGGAGGGVGVFAVQLARLAGARVIGTGSATSADALRALGAEPVAYGDGLVERVRALAPAGVTAAMDLHGTDTAHAARELGVPDERITTIATRIDGITAANGANAPRSALDDIAGLVAAGRLRVPIAARFPVEQIRAAVELQAGRHVHGKVVIDLQDVSAGSWKPGAQGGEV
>NC_015312.1|WP_013672986.1|840355_840937_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MTDTRTGSRTLRAAGSGARGASRYGDHMEMAPPQIGRALVVIVDDRASHGEREDATGPLVTELLEEANFVVDAVVIVPGESVAIRNALNTAVIGGVDLVVTVGGTGVSPRDVTADATAGVLDRPIPGIAEALRASGLAAGAVDAGLSRGLVGVSGSTLVVNLASSRAAVRDGMATLTPLVTHVIAQLSDLDPD
>NC_015312.1|WP_158511290.1|839195_840359_+|trypsin-like-peptidase-domain-containing-protein
MHLSSGPRHTGPQPPWTAGDQSTRTAPEPGRRRGGLIAGLVAALLVAALLGGGVGGWVGYRLADRGQPPAASGSVLDQPLPDVDANPAAAGPVEAVADRVLPSTVQLRVTGVRTEGEGSGMILSVDGLILTNNHVVADAANGGTVTAVFQDGRSAPATIVGRDPSSDVAVVRASNVSGLTPIELGNSDGVRVGQPVVAFGSPLGLGGTVTTGIISALDRAVGVGGDALSGSDPTVFSALQTDAAINPGNSGGPLVDMQGRVIGINSAIATTGSQGGSIGVGFAIPVNSAKRIAQELETTGRATRAVLGVGVADDQTITGARIQSVVPGGPADAAGIRPGDVVVKFGQKQIVTGLDLQAQIRSAAPGAVLPVQLSDRTVQVTLGSATG
>NC_015312.1|WP_013672984.1|836905_838369_+|HAMP-domain-containing-histidine-kinase
MSRAGVADRVAPATRKTASVRTRLPALERISLRARIGILAALVAAAAVVLVSVAAFLIVRANILATLDDNLLQRASAAAQSELADPASLAGIPPEVLGAADIRIALLQTGGAGIPKALSAEGPASAPPLGDDEIAVARGEDPYSVRTADSPDGAYRVVAVQAGQGRALVIGQRLAPTQEVLTKLGIALPIIGALGVGVAAAAGVAVGRAGMRPVQRLTNATERIAATGELDPIPVSGSDELARLTHSFNEMLGALAASQEQQRRLVADAGHELRTPLTSLRTNLELLAAADQPGAPLLPESDRVEILDDVRAQVAELSQLVGDLVELARDDPPRVMAEPVELTDVVERALERARRRAGDVEFDVTLVPWTTVGDATALERAVLNLLDNAAKWSPPGGHVRVEMKPIDDWTVVLEVADRGPGIADEDLPHVFDRFYRADGARTMPGSGLGLAIVRQAAGRHGGAVWAGRAPEGGALLALRLPGRRPPD
>NC_015312.1|WP_013672983.1|836207_836909_+|response-regulator-transcription-factor
MRILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVMMPRLDGLEVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRTPDEIAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHPRRVLTRAQILEQVWGYDFPTTGNALEVYIGYLRRKTEAGGEPRLIHTVRGVGYVLRESPP
>NC_015312.1|WP_013672982.1|835262_836156_+|NAD(P)-dependent-oxidoreductase
MTTVALLGTGIMGAGMGHNMLAAGLDLRVWNRTAAKTKRLEDEGAQAFAEPADAVRGADVVVTMLGDADDVRAVMDRAAPGLAEGQVWAQMTTVGVEPVGTLAEFAREHGLVFLDAPVLGTRAPAESGQLQVFAAGPASAREAITPVFDAVGRQTVWLGDDGAQAAASRFKLVANSWVLAITAATGETLGLAKGLGVDPQTFLDAIEGGPLDLPYLRAKAKAILDDDWTPSFSAANAAKDAGLIVDAATAAGIRLDVAAATRDRLLRACDLGHADDDMAVAYLAGFPDGHPTSDSDE
>NC_015312.1|WP_013672981.1|834041_835196_-|metallophosphoesterase
MFAVLTLLLVVVTHVYLYRRAVHDVFDGRRARRIGATVIVLLGLAVAAAFTTQRALDPGAARPLHTAGYLWLAVVLYATCVLVVGELVRLGLRAAGRAPDPERRRFLSRVLAGTAAVVALGTVTYGAVAARRVRTERRELLLDRLDPAFDGFTIAAISDVHLGPLVGRADLAGFVATINAAAPDAVAIVGDLVDGDVATLGPYAEPLRDLQAPAYFVTGNHEYYSGAAQWVEHLPTLGVRVLRNERVTVRRGGAVLHIAGCDDRTAARSDVPGHGFDLDAALAGRGPDEPVVLLTHQPVMVDQAARADVDLQVSGHTHGGQLWPLTTVALIDQPVLAGLTRVGRTWLYVTRGVGFWGPPVRVGSPPEITVLTLRARGGGTVGPG
>NC_015312.1|WP_143770779.1|833371_834019_-|methyltransferase-domain-containing-protein
MTQPADLDGVRDSYDRVADNYVDMIATTSLGDIRHQPWLRAAMDVFADAVRGLGPVLDVGCGPGTITAYLAERGLDVSGVDLSPRMIEHARRLHPECTFGVGSATDLDLAEASWGGLLGWWSLFNLPRDVLPQVLSAFARALVPGGQLIVATHVGDGDVQRTEAYGGVAVRWTTHLWQPDQLLALIEQTGLTPKAELRLPAEGEIGPGVVLVAEA
>NC_015312.1|WP_013672979.1|831538_833197_-|hypothetical-protein
MSAALRVAVVTASVILAAAGLEAPTASAATLPVPLHVTSAAQTSAPCDLASSTSCTYTGSGELPTVTVPPGISRLTAIVTGSQGGTPRGHDPDGGEGGGAGQVIAQLDVHHGQQLQLWIGRRDPQAGYTHGGGGATSSSSQGGASGGGSSAIVSDNKPLVVAGGGGGGGGGGATTTIVRAGSGGHGGSGGKPAQNGQQGNGNYSGGKSPYRCSGGYGGSGEKAHSGKGDSAVANFVLGGGGGGGGGGGYPHGGTAGYSGDGTLTCGGGGGGGGGESFVGKGAHLLAFDGVAGNGDGSIVLSTHLTAAVFHCTHRKEAWRVPTTVTSVDAIVVGAAGGIPTDPGVSGRPGYGARVAATIAPAGSDLTVTVGCDGNSGAGYGDAHGGGRGIAHTFTGFNGGGGGGASSITDAAGTRLVVAGGGGGGGGSTYFAPQARGGNGGSAGYGPGRAGAHGGSGGQGIYGHGGDGAHESKPRGADGEDSAKPPLLGGGGGGGGGGGYAHGGGRGESNSFGGAGGGGGAGDSYADPTRTRGATFEPGADGGNGVVILLYTP
>NC_015312.1|WP_041760415.1|830354_831260_+|LysR-family-transcriptional-regulator
MELRHLRSFVVLADERHFGRAAVRLHIAQPALSQQLKQLERETGARLLDRSTRRVELTEAGRLLRGRAAEILAAVDRTSADLGLLGAGRAGRVRLGFVGTATYDVLPHVTRRVRDELPDVELEVRGELLGPELMAQLREGDLDIAVFRPGAAVTDDLEVLRLRDEPLVAVLPGDHPSARADAVDLRELDGMPLITHPSGYHSTMQPLVLDVCRRAGLDPHVVEVGETGTLVVFVAAGLGFGLVPHSVRALRLDGVAYVPLSGEPVTAPLVLAHRPDPAPVVARVSALVAAVTSGSGRDASG
>NC_015312.1|WP_013672989.1|843578_843743_+|hypothetical-protein
MAELSEQMRRRIEEIFGDVLPATTRDERGEDEPRRDDEGDEWLRANRPPHHDRD
>NC_015312.1|WP_013672990.1|844244_845150_-|LysR-family-transcriptional-regulator
MPTDFSPTGLRVLVEVAQSGSFSAAARTLGYSQSAVSRQVAALESVAGSALFERRSDGVALTPQGNRLLVRAVRILDELDAAARELTGSPATPEPVRLGAFSSAVAGLLPRALAALPRALLVTVREGSTPSLTRALRAGTLDLAVLAQVPPFRPPDAESPGLEVTLLGEEELVLGVGPRHPFAGRRAVEVGELVGQVWVASRSDAAEPMLGAWPGLAERPDVRYVVRDWHAKLRLVAANLAITTLAPVALSALPPDVRVVAVRGEPQESRRMILARRPGPLHPGITAVTDALLHAAHADPP
>NC_015312.1|WP_013672991.1|845220_846087_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTTGRIALVTGANQGLGRALVEGLAARMGPRDRILLTGRDPERVRAAAASVARGDAAVEGRVLDVRDVSAVAGLAAELGGIDIVVSNATARMRPEDDPADVVDDVVNTNDVATATVLREFGPRLRPGGRLIVVASALGTLDKLDERVRPRFAAAADAGLDAVEELVEQWRLAVHAGRAETEGFGRWLNIPSKVAQVAAVRAVARGRRTADLASNRLVAALCPGLIDTAASRPWFADMSQAQTPAEAARWPVELVLGDTADPAFHGELVQFGRVVPWTTGIPVPHRAVA
>NC_015312.1|WP_013672992.1|846093_846522_-|large-conductance-mechanosensitive-channel-protein-MscL
MLKGFKDFILRGNVVDLAVAVVIGAAFGVIVSSFTDKIIQPLLNAITPPTATGLGITVIAGKPSTYIDFAAVITAAINFLIVAAVVYFAIVLPLKSLKERRKRGEEAGPAEPTDVQLLAEIRDLLAAQNGTPTGKHAPTDRS
>NC_015312.1|WP_013672993.1|846539_847214_-|Flp-pilus-assembly-protein-CpaB
MPAPSASPPRPWRALVARLPATRWRRAVLARRVIAGALVVTAVVLALRPAADPGVPVVVAVHDLPAGTTLAAADVAVRSWPQGLVPGGVAAAPSDVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRADAVSVPVRLADPGVAGLLTPGSLVDVVTPGATADEAVVLASAAAVTAVLPAENGPVAGAAKGRLVLVALPPAQATRLAAASLTQQVAITLRPSTG
>NC_015312.1|WP_013672994.1|847324_847684_-|FmdB-family-transcriptional-regulator
MPTYQYACTACDHRFEAVQSFSDDSLTVCPECGGPLRKVFSSVGIVFKGSGFYRTDSRGSSNGVAASSSESKSDSSSSTSSSDSGSTPQTVSGKPPKHGELVKTSGSNSASSSGSSPAA
>NC_015312.1|WP_013672995.1|847763_848366_-|5-formyltetrahydrofolate-cyclo-ligase
MTACGESRAQDAAKAELRRSLVTARRAVSPQRRAERDRRLAAGAVAAAAGRAVVCAYLPVGSEPGSASMLDALRDAGHVVLLPVVPPEPGSLDWARYEGRCSVTDGPLGLQEPTGPRLGVSGITRAAVIFVPALAVDRRGHRLGRGGGYYDRTLPLAAPDALVTAVVDDHELLDVVPAEPHDVRVGAVLRPATGVTLLPA
>NC_015312.1|WP_013672996.1|848402_849299_+|UTP--glucose-1-phosphate-uridylyltransferase
MSESSARRSFRSAVVPAAGLGTRFLPTTKTVPKELLPVVDTPGIELVAEEAAQAGAERLLIVTSPGKDAVAAHFAPQPALEEMLKERGKDALLAKVRRAPDLLEVATVTQHEPKGLGHAVGCVADVLDDDEEAVAVLLPDDLVLPTGVLTRMAQVRDQHGGTVLCAFDIPGPEISAYGVFDVADTADADVKRVHGMVEKPPADEAPSTYAAAGRYLLDRAIFDALGRITPGAGGELQLTDAVALLIEEGHPVHVVVHRGGRHDLGNPGGYVRAFVDFALQHPDYGDDLRSWLAARLEG
>NC_015312.1|WP_013672997.1|849305_850532_+|molybdopterin-molybdotransferase-MoeA
MRPVDEQLERVLAAAVRPAPVRVAISDAHGLRSAEAVVASRPLPGFDQAAIDGYAVRSVDLSGASEAEPVSLPVVGEIPAGSRQPLRLQPGQAVRVVSGAPLPTLADAVLPADHTDAGTARISVHRGVPSAVFVRRIGEDVQPGDVAVGRDQVIGTAQVAMLAAAGRDKVLVHPRPRVSVLAVGDELVDVSRGAGPGQVPDVCTHAIAAAAREAGAAVSRLRLVRADVREVRSALEDMLPFSEVLVVCGAVAGRPGAELKSAFDGIGEIDATRVAMHPGSSQGFGMVGRDAVPTFLFPAHPSTALLLFEVFVRPLIRVGLGLQDPHRRVLSARLTSPISSRKGRRGYVRGRLLREQDTGDYLVQPLATSGTHLLSSLADANGLVVVPEDVSDLTVDERVSVAFLSARR
>NC_015312.1|WP_013672998.1|850541_851210_+|GNAT-family-N-acetyltransferase
MAHAGPERHGRHPGWPARLGGLRVAAGAVELRPVRLRDAGTWSAIRLRDEEHLAPWEPTAPGTWAQRHSAAEWPARWMLLRSAARRGAALPFVITVDGRLVGQVMLGNVVREPLLSAYVGYWCDSTVGSKGVTTAAVALALDHCFGSVGLHRVEATVRPENAASLRVLAKLGFRHEGLFRRYLDVDGAWRDHLCFALTVEDVPAAGMAAMLVERGLATPAQD

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Crispr_ID: NC_015312_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_2

3653482-3653608

Orphan

Consensus_repeat	Method
CGGGCGCGGTCGGGTACACGGCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015312_2

>merge|NC_015312|2|3653482-3653608|CRISPRCasFinder
CCGGCGCAGTCGGACACCAGGCGCAGTCGGACACCGGGCGCAGTCGGACACCCGGGCGCGGTCGGGTACACGGCGCGGTCGGGTTGACGGCGCGGTCGGGTTGACGGCGCGGTCGGGTACACGGCGC

>NC_015312|2|2|3653482-3653608|CRISPRCasFinder
CCGGCGCAGTCGGACACCAGGCGC	AGTCGGACACCGGGCGCAGTCGGACACC
CGGGCGCGGTCGGGTACACGGCGC	GGTCGGGTTGACGGCGCGGTCGGGTTG
ACGGCGCGGTCGGGTACACGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013675525.1\|3653089_3653323_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_015312.1\|WP_013675516.1\|3643581_3644694_+\|transaldolase	unknown	unknown	gnl\|CDD\|235117
NC_015312.1\|WP_013675533.1\|3662355_3663063_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NC_015312.1\|WP_013675519.1\|3647896_3648850_+\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	unknown	unknown	gnl\|CDD\|378404
NC_015312.1\|WP_049803432.1\|3653735_3654554_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_015312.1\|WP_013675528.1\|3655778_3656792_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_015312.1\|WP_041759760.1\|3649807_3650203_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013675536.1\|3665163_3665646_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NC_015312.1\|WP_041761478.1\|3659100_3659958_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_015312.1\|WP_013675527.1\|3654603_3655782_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_015312.1\|WP_013675532.1\|3659990_3662219_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_015312.1\|WP_013675529.1\|3656912_3657896_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NC_015312.1\|WP_013675520.1\|3648898_3649681_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
NC_015312.1\|WP_041761476.1\|3657980_3659069_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NC_015312.1\|WP_013675534.1\|3663077_3663800_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|130495
NC_015312.1\|WP_013675517.1\|3644701_3646213_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|236551
NC_015312.1\|WP_041759762.1\|3651835_3652669_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NC_015312.1\|WP_041761469.1\|3646308_3647868_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NC_015312.1\|WP_041761471.1\|3650594_3651824_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NC_015312.1\|WP_041761474.1\|3652704_3653046_-\|RNA-polymerase-binding-protein-RbpA	unknown	unknown	gnl\|CDD\|379162

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013675525.1\|3653089_3653323_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.17868e-11
NC_015312.1\|WP_013675516.1\|3643581_3644694_+\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NC_015312.1\|WP_013675533.1\|3662355_3663063_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	1.37894e-09
NC_015312.1\|WP_013675519.1\|3647896_3648850_+\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	gnl\|CDD\|378404	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit. Members of this family are found in various prokaryotic OpcA and glucose-6-phosphate dehydrogenase proteins. The exact function of the domain is, as yet, unknown.	5.14668e-93
NC_015312.1\|WP_049803432.1\|3653735_3654554_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	9.75254e-138
NC_015312.1\|WP_041761478.1\|3659100_3659958_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.7068e-161
NC_015312.1\|WP_013675528.1\|3655778_3656792_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NC_015312.1\|WP_013675536.1\|3665163_3665646_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.39249e-60
NC_015312.1\|WP_041761469.1\|3646308_3647868_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NC_015312.1\|WP_013675532.1\|3659990_3662219_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_015312.1\|WP_013675529.1\|3656912_3657896_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	6.85501e-130
NC_015312.1\|WP_013675520.1\|3648898_3649681_+\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	5.19087e-76
NC_015312.1\|WP_041761476.1\|3657980_3659069_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	7.6732e-98
NC_015312.1\|WP_013675534.1\|3663077_3663800_-\|haloacid-dehalogenase	gnl\|CDD\|130495	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II. Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.	2.89429e-22
NC_015312.1\|WP_013675517.1\|3644701_3646213_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|236551	PRK09533, PRK09533, bifunctional transaldolase/phosoglucose isomerase; Validated.	6.35874e-32
NC_015312.1\|WP_041759762.1\|3651835_3652669_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.37053e-14
NC_015312.1\|WP_013675527.1\|3654603_3655782_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_015312.1\|WP_041761471.1\|3650594_3651824_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NC_015312.1\|WP_041761474.1\|3652704_3653046_-\|RNA-polymerase-binding-protein-RbpA	gnl\|CDD\|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	6.39432e-56

>NC_015312.1|WP_013675525.1|3653089_3653323_-|preprotein-translocase-subunit-SecG
MKLALDIVLIVSSVVLVLLILLHRGRGGGLSSLFGGGVQSSLSGSSVVEKNLDRLTLFTAAIWLIAIVGTGVLVKIG
>NC_015312.1|WP_041761474.1|3652704_3653046_-|RNA-polymerase-binding-protein-RbpA
MSGGNAIRGTRVGAGPMGESERGETAPRVRVAYFCATGHETRPSFAADAEIPETWDCPRCGLPAGRDHTSPPAAPRNEPYKTHLAYVKERRSDADGAAILDEALSRLRASREL
>NC_015312.1|WP_041759762.1|3651835_3652669_-|class-I-SAM-dependent-methyltransferase
MSRGPRRRRVREAVRAKLIEAVDEVVAQRCDEQTALLRAEVAQLRAELAALVRAEGDRVVDEIHAVERRSRRDLVAAGERAAAASTSAFVESRMGDAVALPDAAATLDRALELAPTGGLALEFGVYSGGTLSRIADARPGGAVYGFDSFTGLPETWRPGFRTGTFDDVAGPPEVAGAQIVVGLFADTLPGFLAEHPGPVDLLHLDADLYSSTATVLECVGPRLRPGSVVVFDEFFNYPGWPDHEARAWREFVEATGCAFAWEAYTVADEQVVVRITG
>NC_015312.1|WP_041761471.1|3650594_3651824_+|formate-dependent-phosphoribosylglycinamide-formyltransferase
MTPGPVRIGTPNSPGATRVLLLGAGELGKEVVIALQRLGVEVIAVDRYDGAPGQQVAHRAHTIDMTDAAALTALVEAERPDLVIPEIEAIATDALAALEAAGTTTVIPTARATRLTMDREGIRRLAAEELGLPTSPYAFADSLDELRAAVEGSADGPGIGYPCVVKPVMSSSGKGQSVLRSAADLDHAWEYAMAGGRVARARVIVEGFVAFDYEITLLTVRASTTDGGTATSFCAPIGHLQRDGDYVESWQPQPMSDAALAEARRIAGAVTANLGGRGVFGVELFVAGDRVLFSEVSPRPHDTGLVTLATQRLSEFELHARAVLGLPVDVTLLSPGASAVVYGGVDATGIAFEGVADALAVPGTDVRLFGKPESFVRRRMGVAVAVGDDVAQARERATTAASLVRPVTA
>NC_015312.1|WP_041759760.1|3649807_3650203_+|hypothetical-protein
MTVLVVDGANVVGSRPDGWWRDRAGAAARLATRLGAASAAGLLDPLGAPSRVVLVVEGAARAAEVEPVAGLSLLRAPADGDAAIVDLVGELVAGGERVLVVTADRGLRSRVTEAGGEVVGPGVLLRALDAL
>NC_015312.1|WP_013675520.1|3648898_3649681_+|6-phosphogluconolactonase
MASEPDIVVHRSPDVLAAAVAARLVTRLVDLQSAGRVPRLGLTGGGIGIALLEQLRTGPARDAVDWSQVEFFWGDERFLPRGHADRNETQAREALLDHVAVDPAKIFAMGADTGTGPAGAEDAAQAYADMLASRAAPEDHGPMPTLDVLLLGMGPEGHTASIFPHSPAVYETERTVVAVHNCPKPPPTRVSLTLPAIRSADQVWVVTTGEPKAAAVAMALTGAGEVAIPVAGVRGRSRTRWLLDRAAASKLPRDLVPPIA
>NC_015312.1|WP_013675519.1|3647896_3648850_+|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA
MIVDLPSSTTSAVNRKLVELREAGGVMALGRVLTLVIVTDDGGSAEQAIEAANAASREHPCRVLVIARGSRQAAARLDAQIRVGGDAGASEVVVLRGYGPLASEDAGAGMVVPLLLPDAPVVAWWPADAPAVPSDDPIGRLAQRRITDALSARNPTKAFEQRRSGHVAGDSDLTWTRLTHWRALLATALDNPPHEPVTGAVVAGEAVSPSTDLLAGWLAVRLGVKVKRSPSTAGGGGMSSVQLARRSGSIELLRPDGRTATLRQPGQPDRMIVLSRRGVPDCLAEELRRLDPDEIYGEALAGIGLVSRGRSPVNLVP
>NC_015312.1|WP_041761469.1|3646308_3647868_+|glucose-6-phosphate-dehydrogenase
MPTGRTAGQLADGWTNPLRDPRDKRLPRIAGPCGLVIFGVTGDLSRKKLMPAIYDLANRGLLPPGFALVGFARRDWAADDFGDVVLKAVREHARTPFRQEVWDKLAEGFRFVQGSFDDDHAFDQLARTLHDLDRVRGTGGNHAFYLSIPPSAFPVVCKQLARSGLSAQDGDQWRRVVIEKPFGHDLGSAIELNEIVNEVFPEDSVFRIDHYLGKETVQNVLALRFANQLFEPIWNSHYVDHVQITMAEDIGLGGRAGYYDGIGAARDVIQNHLLQLLAFTAMEEPVSFSSDELRAEKIKVLNATRLVGPLEETTARGQYTGGWQGGEKVVGLKEEEGYDPESRTETFAAITVEVDTRRWAGVPFYLRTGKRLGRRVTEIAVIFKRAPHLPFDATMTEELGQNALVVRVQPDEGVTMRFGSKVPGSQMEVRDVTMDFGYGTAFTEASPEAYERLILDVLLGEPSLFPVNQEVERSWQILDPVLEAWAAREDGPDPYPAGSWGPDSANRMLARTGRTWRRP
>NC_015312.1|WP_013675517.1|3644701_3646213_+|glucose-6-phosphate-isomerase
MALLDPADGPLAADAALVAARLAGETVASRIGDGDPSVWGRAATDALGWAALPRTSRPLLGQVAGLRERFRVDGARRVVLVTAPGLAHGADLLARAAGAPLTVLDSADPGAVADALAGDMATTVLVVVDPMGDPDGPAAAVARVLADAIREEGVEPAGRTVAVTEPGSPLDGPARAAGATVVTCERDVPARFGTLGAAGLVAAGLAGADLEEILADAAGAVDAVVADAAENPALELAGLLTAGSGPLRIAAGTGPDGLAGWVEHLVGGSTGGLGPLPLVGDPWPGAGGSGRVLSLQRDETFFATRGGVGAQVALWQHAVAVAARVLGADPFAGGIAPALAEGTPAALPCVGVDGDVEIRAAGDWLPDGTTSVADALRALAARAEGTLAVEAWLDPVDDASAAVLRPELARRTGLLTTFGWAPRGHDGLGRHHRDAPGAAFCVVTGESEHDRAVPGGGTLADLVAAQVGADAADLVARGRPVLGLHLRDRLGGLVTVARAVEQL
>NC_015312.1|WP_013675516.1|3643581_3644694_+|transaldolase
MSTHERLAGLSAAGVSIWLDDLSRERLRSGNLRELIEDWNVVGVTTNPTIFAGALAHGEAYDEQVRELAARGASVADAVREITVADVQQACDLFSGTWEATGGVDGRVSLEVDPTLARDTDATVAEALDLWKAVDRPNLLVKIPATEQGLPAITRALSEGVSVNVTLIFSVERYRAVMEAYLSGLEQAAANGHPLASIRSVASFFVSRVDTEIDKRLDAIGTDEAKALRGKAGVANSRLAYAAFQEVFTGARWEALKAQGAHVQRPLWASTGVKNPDYPDTLYVSELVVADTVNTMPEKTLKAFADHGVIEGDKVTGTGPQAQQVFDDLERVGVDLTDVFLVLENEGVEKFDKSWDELAATVQQQLDASR
>NC_015312.1|WP_049803432.1|3653735_3654554_-|triose-phosphate-isomerase
MTVTPSAGTPTSGRKPLIAGNWKMNLTHLEAIAFLQKLAYGLPEKYYAKVEVAVLPPFTAIRSVQTVIDGDGLLMTHGAQDISPHESGAYTGDVSGPMLAKLMCRYVVVGHSERRAYHHEDDAVVNAKVRAAFASGITPILCVGEGLDVREAGEHVGHCTTQLSAALEKVTPEQAATLVVAYEPIWAIGTGRVAGAGDAQEVCAAVRGTLGKLYGDTVAGSARVLYGGSVKSGNVGEIVAEPDVDGALVGGASLDPDEFAKLCAIAAGGPLP
>NC_015312.1|WP_013675527.1|3654603_3655782_-|phosphoglycerate-kinase
MKTLDDLLDEGVEGRTVLVRSDLNVPLDGDRITDDGRIRASVPTISELSGAGAIVVITAHLGRPKGGPDPALSLAPVASRLSELLGAPVKLVPLDAVPNMAAGDVVLVENIRFDPRETSKDDDERAGLADELVAIAGDDGAFVSDGFGVVHRKQASVYDVAQDLPSYAGGLVQAEVEVLRRLTEDPARPYSVVLGGSKVSDKLAVIEALLPRVDSLLVGGGMCFTFLAAQGYGVGASLLESDQIGNARKLLESGKILLPVDVVVADRFAADGQVRTVAVDAIPDGWLGLDVGPDTVAAFGEALSGARTVFWNGPMGVFEMAPFAKGTRGVAQAIVDATAAGAFSVVGGGDSAAAVRALGLPEDGFSHISTGGGASLEYLEGKALPGLSVLDR
>NC_015312.1|WP_013675528.1|3655778_3656792_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVGVNGFGRIGRNFWRAVDAQRAAGTSDIEIVAVNDLTDNATLAHLLKYDSILGRLPYEVSTSGDDIVVDGKPLKALAERDPAQLPWKDLGVDVVVESTGIFTKREGAAKHLDAGAKKVVISAPATGEDITIVKGVNDDQYDGSQTIISNASCTTNCLAPLAKVLDDLLGIEKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAISLVLPHLKGKLDGYALRVPIPTGSATDLTVEVRKEASAEEINAAFRAAAEGPLKGILKYTEDPIVSSDIVTDPHSTIYDAGLTKVIGNQVKVVGWYDNEWGYSNRLADITALVASKL
>NC_015312.1|WP_013675529.1|3656912_3657896_-|DNA-binding-protein-WhiA
MAMTAAVKDELSRLSVTKPSCRRAEVASLLRFAGGLHIVGGRVVIEAEVDTGSVARRLRREIHDLYGHQCEAHVITAGGLRRSARYVIRVVRDGEGLARQTGLLDARGRPVRGLPPPVVSGDVSDAEAAWRGAFLAHGSLTEPGRSSALEVTCPGPEAALALVGAARRLGVTAKAREVRGADRVVVRDGDAISALLTRMGAHSSVLAWEERRMRREVRATANRLANFDDANLRRSARAAVAAAARVSRALEILGDDVPQHLLAAGKLRAEHTQASLEELGQLADPPMTKDAVAGRIRRLLHMADKRAADLGIPDTESAVTPEMLEDA
>NC_015312.1|WP_041761476.1|3657980_3659069_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRAVALGGGHGLHATLSALRLLGDVIDRITAVVTVADDGGSSGRLRRELGSLPPGDLRMALCALAAPVAPENGATTVAAPGEEPGRETGHAAAHDAAAVHDAGDDLWVRVVQHRFGGNGALAGHAVGNLVLAGLMDVTGDAVTALDRMGALLGARGRVLPMSCDPLTIEAQVTGLDDDPAAVRLIRGQVAVASTPGRVRRVWLRPTDPTPCREAVAAVREADVVLLGPGSWFTSVLPHLLVPGLREALLTTAARRVVVLNLAPQPGETAGFSPEQHLDVLSQHAPALRVHAVLADRAAVPVPDRLRRAARTMLVPDGTVHLAPVAADDPAVPRHDPAALAAALRSVLVGTGRAAAGAVERRT
>NC_015312.1|WP_041761478.1|3659100_3659958_-|RNase-adapter-RapZ
MEVALVSGLSGAGRSTAAKVLEDLGWFVVDNLPPELIATMVDLGARARGEITRIAVVMDVRSRAFTDDLGAVIKDLDARGYKPRVLFLEATDAVLVRRFEQVRRSHPMQGDGRLSDGIAAERELLRPLREDADLVVDTSTMSVPLLRATLERTFGDELSPATRVTVLSFGYKYGLPMDSDLVVDVRFLPNPHWIPELRDFTGRDAAVRDYVLSQEGAEEFIDRYLDLLALIGAGYRREGKRYLTVSVGCTGGKHRSVAISEELARRLAGAEHVVVNVSHRDLGRE
>NC_015312.1|WP_013675532.1|3659990_3662219_-|excinuclease-ABC-subunit-UvrC
MPDPATYRPAPGSIPEAPGVYRFSDPRGRVIYVGKAKSLRSRLNSYFADVAGLHPRTRQMVTTAAAVEWTVVRTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLHVYRGPRRKGVRYFGPYAHAWAIRETLDMLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGTVTADEHRTIVDDFCDFLAGRTDRMVRELERRMEDAAGALEFEKAARLRDDIGALRRAMEKQAVVLGDGTDADVVAFAEDDLEAAVQVFHVRGGRVRGQRGWVIDKVEPTDTSQLVGRFVSQFYGEQAALAGSADDAHQPVPREILVPELPPDAEALAEWLSGLRGSRVQLRVPRRGDKRALAETVARNASEAFARHKLRRAGDLTARSAALQEIQDALELESAPLRMECIDVSHVQGTDVVASLVVFEDGLARKSDYRRFEIKGGADGGDVAAIAEVVRRRFRRYLAETAVETAVDPGGGAANGRPAVVADGSAADGHPVGDEEPRTRNAAVDSAEPLDISATVSAPSATVRTGIDPHTGRPRKFAYAPNLLVVDGGPPQVEAAAQVLGELGIDDVAVCGLAKRLEEVWLPADPDPVIMSRTSEGLYLLQRIRDEAHRFAITYHRQRRSKGMVASELDAVPGLGPSRRQALLKQFGSVRKLRAAGVDEIAAVPGFGRRTAAAVVAALHGEAPAGDAQPTTPAGGAPDAPGAAADPGAAVGGVLPSTAATAAHGESS
>NC_015312.1|WP_013675533.1|3662355_3663063_+|DUF2786-domain-containing-protein
MADTLDRIRKLLAKAERAGTEAEARVYTAKAAELSARHGVDAALLAAARPGADPVGCTRVELCEPYSGGKARLLGWTASALRCRWVLHPAGRGRVRAVTVVGHAVDRDRVGLLYESLVVQATRELARCRPPDPGESVAAYRRSWLLGFAARVHERLLAAERSAVARAAAGPAPGGRTAALVLADRGAAVDRAFAAAFPDLGTARRPRRSGSGFGAGVLAGSRADLGRGRLAAEPR
>NC_015312.1|WP_013675534.1|3663077_3663800_-|haloacid-dehalogenase
MAGPTSGASSVPASGRAPAARPRAVLLDVYDTTLRVGVLRERFVDVGRPELECDVFLARAMRDGIAFSMAGADGSFGSYVREALRATTGHTLSEDALDHVMAGFSALPPQPDAEYALMALARAKVSVYAFGYGNERVLSDALDRSGLRTYLRGTISVDDLARLRPAAGAYHHGCRTAHAEPARTALVSVHAWDIHGAARAGLLTGLVCRGEGRVPATMEQPHVRGERLDQVVEALLALPG
>NC_015312.1|WP_013675536.1|3665163_3665646_-|6,7-dimethyl-8-ribityllumazine-synthase
MSGEGRPVDLGDLDGAADLRVGIVAASWHAEITEVLLQRAVAVAEKAGAVPTVVRVSGTMELPVVCQALARTHDAVVALGVVIRGGTPHFEYVCDSVTAGLTRVALDEGVPVGNGVLTCNTTEQAVDRSGMPGSAEDKGAEATIAALHTALVLRGLRTPA

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Crispr_ID: NC_015312_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_3

4041515-4041601

Orphan

Consensus_repeat	Method
CGCGCGCAACCCCGGCGCTCGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_3

>merge|NC_015312|3|4041515-4041601|CRISPRCasFinder
CGCGCGCAACCCCGGCGCTCGGATTCGCGCCGCGGCGGACGGTGAGGTTGCGCCCGGGCTCTTCGCGCGCAACCCCAGCGCTCGGAT

>NC_015312|3|3|4041515-4041601|CRISPRCasFinder
CGCGCGCAACCCCGGCGCTCGGAT	TCGCGCCGCGGCGGACGGTGAGGTTGCGCCCGGGCTCTT
CGCGCGCAACCCCAGCGCTCGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_049803711.1\|4044377_4044980_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_015312.1\|WP_013675866.1\|4035482_4035869_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NC_015312.1\|WP_013675880.1\|4051629_4052949_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_015312.1\|WP_143770544.1\|4049532_4051047_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NC_015312.1\|WP_013675863.1\|4033183_4034401_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NC_015312.1\|WP_143770933.1\|4039613_4041227_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NC_015312.1\|WP_013675864.1\|4034397_4034784_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NC_015312.1\|WP_013675874.1\|4044995_4045850_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NC_015312.1\|WP_013675862.1\|4032736_4033069_-\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013675871.1\|4041751_4042039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235082
NC_015312.1\|WP_013675879.1\|4051145_4051610_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379209
NC_015312.1\|WP_013675872.1\|4042193_4044236_-\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|235057
NC_015312.1\|WP_143770935.1\|4048287_4049409_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NC_015312.1\|WP_173400073.1\|4038205_4039462_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_015312.1\|WP_013675867.1\|4035914_4037114_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|179663
NC_015312.1\|WP_041759862.1\|4045956_4046829_-\|3-keto-5-aminohexanoate-cleavage-protein	unknown	unknown	gnl\|CDD\|377562
NC_015312.1\|WP_013675868.1\|4037170_4037791_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_015312.1\|WP_013675869.1\|4037880_4038138_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013675876.1\|4047044_4048265_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_015312.1\|WP_013675865.1\|4034915_4035437_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226769

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_049803711.1\|4044377_4044980_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	3.59303e-42
NC_015312.1\|WP_013675866.1\|4035482_4035869_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.07267e-09
NC_015312.1\|WP_013675880.1\|4051629_4052949_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.20818e-45
NC_015312.1\|WP_143770544.1\|4049532_4051047_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	3.0498e-45
NC_015312.1\|WP_013675863.1\|4033183_4034401_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	2.15076e-121
NC_015312.1\|WP_143770933.1\|4039613_4041227_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.88462e-112
NC_015312.1\|WP_013675864.1\|4034397_4034784_-\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	7.04617e-26
NC_015312.1\|WP_013675874.1\|4044995_4045850_-\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.15125e-26
NC_015312.1\|WP_041759862.1\|4045956_4046829_-\|3-keto-5-aminohexanoate-cleavage-protein	gnl\|CDD\|377562	pfam05853, BKACE, beta-keto acid cleavage enzyme. BKACE, beta-keto acid cleavage enzyme plays, a role in lysine degradation. In certain instances it catalyzes the conversion of 3-keto-5-aminohexanoate and acetyl-CoA into acetoacetate and 3-aminobutyryl-CoA. The family is found to have at least 14 slightly different potential new enzymatic activities, all of which can therefore be designated as beta-keto acid cleavage enzymes.	2.80917e-60
NC_015312.1\|WP_013675871.1\|4041751_4042039_-\|hypothetical-protein	gnl\|CDD\|235082	PRK02888, PRK02888, nitrous-oxide reductase; Validated.	6.40516e-06
NC_015312.1\|WP_013675872.1\|4042193_4044236_-\|NAD(+)-synthase	gnl\|CDD\|235057	PRK02628, nadE, NAD synthetase; Reviewed.	0
NC_015312.1\|WP_143770935.1\|4048287_4049409_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.57032e-65
NC_015312.1\|WP_173400073.1\|4038205_4039462_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.31692e-144
NC_015312.1\|WP_013675867.1\|4035914_4037114_+\|DNA-polymerase-IV	gnl\|CDD\|179663	PRK03858, PRK03858, DNA polymerase IV; Validated.	0
NC_015312.1\|WP_013675868.1\|4037170_4037791_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.06175e-16
NC_015312.1\|WP_013675879.1\|4051145_4051610_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.0031269
NC_015312.1\|WP_013675876.1\|4047044_4048265_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.98882e-101
NC_015312.1\|WP_013675865.1\|4034915_4035437_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	2.43844e-16

>NC_015312.1|WP_143770933.1|4039613_4041227_-|ABC-transporter-substrate-binding-protein
MRLRSRLSRRGGVLVLALCAALAAACGAADNGGVGGNKPIVAVNPYGANLAAEGVPKRGGTLTIGEDREIVSFDPTVQNANPAAAAVYDSLMKVEPDGTVAPFLAESMTTADGGRTWTLKLRPNVAFSDGTPLDAQAVVVNVQRHIDKVSSPAHQAAAQIASMTTPDPLTVVFGLKTALGDFSTNFGGAFFGGTLGMIVSPAALKQYGDQIGSHPVGAGPFMLVSWVRDAKLDVTRNPHYWQPNMPYLDNIEFRPIPDTDSRSASIQNGDVDMIFGGYNQELVRGLANPNLNVYYGPGNAGEFLYFNLHNAPFDNRDMREAIVRGIDLNALSASQYNNQMVKADSLFDASSPYHTAAASAEWPTFDQAKATQLVDAYRAGGGNPDFVFKTTTTRQAFAEFLQAQMAAIGIHVTVQTYDLAQFSSSVLQGGDFQLTTWVGPFDNPDPGASRLLHSGGNGNYGKYANPQVDQWLDDAAATQDPAQRTKDYQQVELQVNKDLVVDFFSRSYLSTITKKDVKGMDRFLSRDMWFAGTWLDR
>NC_015312.1|WP_173400073.1|4038205_4039462_-|IS256-family-transposase
MPRARIDHQQFAQQLVEAAKADGVELVGPDGLLTGLTKTVLETALEAELSEHLGYDRHDPAGRDGGNSRNGTRTKTVLTEIGPVEIEVPRDRDASFEPQIVRKRQRRLDGIDEIVLSLTARGLTTGEVAAHFAEVYGAKVSKDTISRITDKVLDELGEWQNRPLDAVYPVLFIDALYVKVRDGQVTNRPFYVVIGVTVDGQRDILGIWAGEGGTGGEGAKFWLQVLTEIKNRGVGDVCIAVCDGLKGLPEAITTAWPQAVVQTCVLHLIRNTFRYASRRYWEQLAKDLRPVYTAPTEAAAQARFAEFAETWGGQYPAIIALWRAAWSEFVPFLDYDVEIRKVICSTNAIESLNARYRRAIKARGHFPTEQAALKCLYLVTRSLDPTGKGRTRWAMRWKPALNAFAITFAGRIVPSNGN
>NC_015312.1|WP_013675869.1|4037880_4038138_+|hypothetical-protein
MFKSKHHDNDKHHNHSEHEKHRYEEQYGSHHKSDDWRDTSCNDSWEDKSQHHHWEDKSYEHDKSCHEHRDDSSWDHSGGYGGHNG
>NC_015312.1|WP_013675868.1|4037170_4037791_+|PadR-family-transcriptional-regulator
MPSVPDVRLSPTSYVVLGMIALRGPSTPYDLKRAVGHSVGYFWHFPHAQLYSEPERLTDAGLLTCESETSGRRRKTYSITPEGRAALEAWIAEPSDSHFQIRDPAELKLFFNEVGNPDDVTRLAGQQIARHEERIALYEGMVERFGPDPADNPRLITLELGLEVEYATLRFWRALAAGDLAGLRKRRDLLDGPDVPDGTDTRPDQA
>NC_015312.1|WP_013675867.1|4035914_4037114_+|DNA-polymerase-IV
MFVSRDATILHADLDAFFASVEQRDDPALRGRPVIVGGGVVLACSYEAKAAGVRTAMGGRQALALCPAAVVVRPRMSAYSEASKAVFRVFESTTPLVEGISIDEAFLEVGGLRRIAGAPMDIAARLRRDVAEQVGLPITVGVARTKFLAKVASGVAKPDGLLRVPPEAELEFLHPLPVERLWGVGKVTSAKLHAIGVRTVAEVAGLGEPALVSFLGRAAGRHLHALSHGLDPRRVETGVRRRSIGSQRALGRRERPPEELDAIVAGIVDRLGKRLRGGHRVCRTVVLRLRFGDFTRATRSHTLAGATAHTPTILRAARQLLHAAMPMILDRGITLVGLSLANLDDDGAVQLVLPFERDAGPELDATLDELRDRFGGEAVTRAARLGRDPGIHMPVLDDP
>NC_015312.1|WP_013675866.1|4035482_4035869_+|VOC-family-protein
MFEKTPAFSGFSVDDIPAAKAFYGDVLGVRLSERDGMLVLHLAGDAGSTRDTLVYPKPDHVPASFTILNFRVGDVDAAVDALVAKGVTFQVSDWTDERGVQRRYGPPIAWFTDPAGNVLSVIQDQGTG
>NC_015312.1|WP_013675865.1|4034915_4035437_+|nuclear-transport-factor-2-family-protein
MTTSPATDQADTRADEAAVRAVLAEEAAVRALFAEEAAVRALLAEEAEAMRTRDAELAVARYATDAMIFDLAPPLGRRGHAAAGVRAWLAGFDGPVTIETTELEVTVGGDLAFAHGLRRMSAVPAGAAEGFSFWYRATTCLRRVQGRWRVVHEHTSTPFHMDGSFRAATDLQP
>NC_015312.1|WP_013675864.1|4034397_4034784_-|hypothetical-protein
MKYLIMIMMNPEAGAMWAQMSPERQRQGYEAHDRVREAIAAAGELVTAEALQGPEAARRVRLRGGQVVTTDVPFAEAKEHLAGYYLVDCPSVEKAVEWAAAMPEAEFVDIEVRPVLDLHPLAGAQPGT
>NC_015312.1|WP_013675863.1|4033183_4034401_-|sigma-70-family-RNA-polymerase-sigma-factor
MSAVPSGELLRALTPEVVAALARRYGDFETCEDAVQEALLAAATQWPSDGVPENPKAWLITVAARRRIELWRSDDARRRREETVAALEPPDPAPAPQSDDTLTLMLLCCHPALTRPSQVALTLRAVGGLTTTEIARAFLVPEPTVGQRISRAKQRIAAAGGRFRMPPPAELDDRVAAVCAVLYLVFNEGHTASEGPDLQRVELSGEAVRLARLLRAARPADDEVAGLLALMLLTDARRDARVGPDGGLVPLAEQDRSRWDAGAIDEGLALVAQVLPAGPVGPYQLQAAIAAVHAEAASASDTDWPQILGLYRLLETVAPGPMVALNRVVAVAMVHGPAAGLAGLDELAADAALAGHHRLHAVRAHLLERAGRVAAARREYTAAADLTRSAPERRYLAGRAAALRG
>NC_015312.1|WP_013675862.1|4032736_4033069_-|hypothetical-protein
MDLTTGHAVGMVLGIGAGLVAGLLRGRLLPVTATRTGTAAVLAVAFGIAAASLATGRPAAGLLAAAAGVLGLLVAERLRRGPDAPAPPRVRGRVGSDGGPSLLLLLIGDL
>NC_015312.1|WP_013675871.1|4041751_4042039_-|hypothetical-protein
MTAPTPAPSPPDREPPSATGRARTLVAAAAAALAAVAVTTGVVVGLTAGAPATQPAAAAAATASRPVAPGGHHAGPAAPATSSAAITLCGRSSAG
>NC_015312.1|WP_013675872.1|4042193_4044236_-|NAD(+)-synthase
MDFYSAYRHGFLRVAACTLRTVIADPAANAASVLETARALHDDGVGMALFPELTLSGYSIEDVLLQDTLLDAVERALADIVAGSADLLPVLVVGAPLRYRHRIHNCAVVIHRGRVLGVAPKSYLPTYREFYERRQVAPGDDIAGTLRLAGADVPFGPDLLFAAADVPGFVLHVEICEDMWVPVPPSAEAALAGATVLANLSGSPITVGRADDRALLCRSASSRCLAAYVYAAAGEGESSTDLAWDGQTMIFENGVLLAESPRFPRGPRQAVADVDLDLLRAERLRMGTFDDNRRHHAARLDSFRRIEFRLEPPGHDIGLRREVERFPFVPADPARLEQDCYEAYNIQVSGLEQRLRAIGQPKVVIGVSGGLDSTHALIVAARAMDREDRPRSDILAFTLPGFATGERTKNNATRLAEALGVTFETIDITETARLMLRNLAHPFSSGEPVYDVTFENVQAGLRTDYLFRAANQRNGIVLGTGDLSELALGWSTYGVGDQMSHYNVNGGVPKTLIQHLIRWVVSSKQFDDEVGAVLTDVLDTEITPELVPVDDERPVQSSEATVGPYSLQDFTLFHVLRWGMRPSKIAFLAWHAWHDVEAGDWPAGFPEADRVAFAMSDVRRWLEVFAQRYFGFAQFKRSALPNGPKVSAGGSLSPRGDWRAPSDMSARIWLDEIRREVPPA
>NC_015312.1|WP_049803711.1|4044377_4044980_+|TRIC-cation-channel-family-protein
MLTTADLAATMLFAVEGGAQAAAAGLDLFGVLVVAFATAVGGGILRDLLLGDVPPAALRSVAYPAVIATGATIVVVLYAGVRAVPAPVLVALDAAGLALFCVVGATKALDRRVGGVLAVLLGTITGVGGGVLRDLLLREVPTVLRTDIYALAAALGAFVVVVARRSGMPRAAAMVVGAAACLALRLVSAAFGWHLPQVVA
>NC_015312.1|WP_013675874.1|4044995_4045850_-|CBS-domain-containing-protein
MVLRAREIMTSRVVTVRADAPVTLAEQRLAEFRFSALPVVDERNRLVGMVSVVDLLRHREQNPGDARTPVESVMTRDIVHMSPNAGVGIVAHRMRTYGELRVIPIVDRGVLVGVVTRSDLIRPRPTGGPIRRAVRRFLERRSEENRPSHTYRAPARPPRSLPDDAPVRAAMTTGDLVTITEDRPTEEAAALLTGRRLTSIPVVTAGDRLVGVISEADLLRDPLDGRRTGSPRTVGGAMTRDPVVVGPDDELARARALMAERGFRILPVVQAGRLVGVLSRRDLL
>NC_015312.1|WP_041759862.1|4045956_4046829_-|3-keto-5-aminohexanoate-cleavage-protein
MIVELALNGPTPRSVNRHVPRSPAEITAVALEGIELGASIVHNHNDDPMFTADGVHAVEPYVRAWTPILDRYPDVLLYPTMGAAARGIPVERRWAHVEELARRRMGMTLVDPGSVNLGLTSDGVLDPVAAAEPYANPHADTDHMITRTAALGAAPSISIFEPGYLRTVLTWHRTGRLPAGAIVKLYFGGRLEFGLPPTPTALEAYLELLAPSGLPWSVAVLGGDVVGCGLAELAVRRGGHVRVGLEDHAGPGEPSNADLLRALGELLADMGRVPASIAETRAILGVPATA
>NC_015312.1|WP_013675876.1|4047044_4048265_+|cytochrome-P450
MTRTVGNTDPIPLDDDFFADPDALYRRLRVEAPVTRIVAPPGLVVWLVTRYADVRPALNDARLAKNGRRFQDLIGRHTAPTVRMAEFANSLVEHMLNSDPPDHTRLRKLVNRAFTVRAIAQMRPRITEIATELADSMTAHGPEVDLLDEFAFPLPMTVICELLGVPQDRRDEFRTWSNTLLSAGEPEERSAAAQAMAQFLAELVAQKTAQPGEDMLSAIVAASEDGDRLSHIEVISMAFLLLVAGHETTVNLIGNGMLALLRRPDQLAALRADPSLVPNAVEEFLRFDGPVNLATMRHTSAPVEIGGVTIPEGELVLVSLIGANRDPGRFERPDELDVTRDTSGHVAFGYGIHHCLGAPLARLEGEIAFRTLLDRFPDIELAAEPASLAWRESSLIHGLHRLPVRF
>NC_015312.1|WP_143770935.1|4048287_4049409_-|metallophosphoesterase
MLVPLVVVPLLLFGVPPWTVVLGGQSWPAWVVVAGVVLAVLALAGLPVLMAVGHGRRHVDAAARVGDTLLGVAWLLFTCSVLGLLLELVLLVIGVPDPLRSRVVAGVVVGGWLLLVAYGLTEALRVPRVRTREVALERLGPGLDGMRVVVLADTHFGPLDRTRWSTRVAAVVAGLAPDLLVHAGDIADGDVADRGGQVRPVGELQARLGRFSIVGNHEHFSGAAQWVEHMRGLGWQPLVNEHRLVERGGDRLVVAGIDDPTGTGRELSGGPDLAGALAGADPDLPVLLLAHQPRQVRDAVAAGVDLQISGHTHGGQIWPFHLIVRLEQGALAGLSSHGPRTRLYTSRGSGFWGPPLRVFAPSEITVLVLRATG
>NC_015312.1|WP_143770544.1|4049532_4051047_+|LLM-class-flavin-dependent-oxidoreductase
MPAARTRLSAVAQARAHGRPDPRGHRHTPRVELPDPALVVLVGPAGAGKSAWAAARYRDAEIVSSDALRGRVGSGPADLDATDDAFTVLEAVVAARLRRGLTTVVDTLGLDARRRRAWLAAGRAVGLPCVAAVFDTPAAVCRARNRGRDRPVPAPALTSQLRRMPGVSAEIAGEGWDLVVRDDGGPAPDGPQAPVAEHAAGTPLFAEPGRLSFVLQVSRFPWGDDPASWLTSVAAAAEDAGFAGLALMDHLIQIPQVGRPFEAIPEPLVTLGLLAGATTSLHLGTLVSPVTFRAPGILAKAFATLDTLSGGRAFCGLGAGWWGREHAGFGLSFPPPRDRVDALEHAVATMRALWASGTRPAAGLPETTCYPRAVGPLPIVVGGTGRRMLRLAATVGDACNVPVARVDEVAAAGPQKHVTVLDVPVLGEDREHVATLVERLRGRTDAVTFAGRHHAGTAARHVARYRALAEAGVCTVFVAPPDLAGPDDVARWAPVVAQLGGPPG
>NC_015312.1|WP_013675879.1|4051145_4051610_+|nuclear-transport-factor-2-family-protein
MELDEDFRAALERVRRAVNDFVNGDPEPYKACWHHQDRVSIFGGLGAYEAGWDEVGPRLEWVAAGFVTGYVEEEVLSAGCSGDLGFTVCLERGRQQVAGRDTDAPVVLRVTQVYERVDGVWGLVHRHADPLTDKGGATAILAGGGHAAGPGPAG
>NC_015312.1|WP_013675880.1|4051629_4052949_+|amino-acid-permease
MTASPLARRLTTTDAVVIGLGSMIGAGVFAVFAPAAAVAGPWLLLGLGIAGLVAYCNATASAQLAAQYPTSGGTYAYGRARLGPWWGFLAGWGFVVGKTASCAAMALTFAAYLVPPFWQRPVAVAAVLALAAVNLLGITRTAALTRVLVIVAVAVLGLVVAAGFLAATRHPAPGPGPGVAVGAYGPGVAVGAYGVLQSAGLLFFAFAGYARIATLGEEVRHPRTTIPRAVLLALGLAVALYLVVGSAALLALGPARLASSAAPLADVVRAAGWDRAVPVVAAGGAAAALGALLALIAGLGRTSLAMAREGDLPRPLAAVSARHQVPHRAELAVAGAVVVLVCTVDLRGVIGFSSFGVLVYYLVANLAARTQTGEHRRYGRPLQLAGALGCAVLVVTLPWQAVVGGVAVFAVGIGYRLVRLRLAPPPGEGGDDGSATSGG

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Crispr_ID: NC_015312_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_4

4460828-4460926

Orphan

Consensus_repeat	Method
GTGCCGCAGTGCCCGCAGAACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_4

>merge|NC_015312|4|4460828-4460926|CRISPRCasFinder
GTGCCGCAGTGCCCGCAGAACCGGGTGCCCTGCGACGGTGCGCCGCACCCCCGGCAGGACGGTGGCGCGAACGGGGTGCCGCAGTGACCGCAGAACCGG

>NC_015312|4|4|4460828-4460926|CRISPRCasFinder
GTGCCGCAGTGCCCGCAGAACCGG	GTGCCCTGCGACGGTGCGCCGCACCCCCGGCAGGACGGTGGCGCGAACGGG
GTGCCGCAGTGACCGCAGAACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013676223.1\|4464647_4465268_-\|potassium-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|376890
NC_015312.1\|WP_013676228.1\|4469459_4470521_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549
NC_015312.1\|WP_049803462.1\|4462053_4464624_-\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NC_015312.1\|WP_013676227.1\|4469130_4469301_-\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013676226.1\|4469032_4469134_-\|K(+)-transporting-ATPase-subunit-F	unknown	unknown	gnl\|CDD\|378219
NC_015312.1\|WP_143770970.1\|4461523_4461937_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_015312.1\|WP_013676224.1\|4465269_4467375_-\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NC_015312.1\|WP_013676230.1\|4471542_4472907_+\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_015312.1\|WP_013676210.1\|4446911_4448855_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214500
NC_015312.1\|WP_013676209.1\|4445541_4446792_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
NC_015312.1\|WP_143770969.1\|4450866_4451727_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274928
NC_015312.1\|WP_013676213.1\|4451792_4452383_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015312.1\|WP_013676218.1\|4456485_4459464_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
NC_015312.1\|WP_013676214.1\|4452410_4453760_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350145
NC_015312.1\|WP_013676225.1\|4467371_4469033_-\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|377138
NC_015312.1\|WP_013676216.1\|4454982_4456122_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_015312.1\|WP_013676219.1\|4459568_4460768_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|169028
NC_015312.1\|WP_013676211.1\|4448869_4450711_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214500
NC_015312.1\|WP_013676215.1\|4453876_4454986_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176193
NC_015312.1\|WP_013676229.1\|4470583_4471285_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013676223.1\|4464647_4465268_-\|potassium-transporting-ATPase-subunit-C	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	2.30146e-72
NC_015312.1\|WP_013676228.1\|4469459_4470521_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	8.0968e-125
NC_015312.1\|WP_049803462.1\|4462053_4464624_-\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NC_015312.1\|WP_013676226.1\|4469032_4469134_-\|K(+)-transporting-ATPase-subunit-F	gnl\|CDD\|378219	pfam09604, Potass_KdpF, F subunit of K+-transporting ATPase (Potass_KdpF). This entry describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (IPR004623). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.	0.000978354
NC_015312.1\|WP_143770970.1\|4461523_4461937_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.93502e-13
NC_015312.1\|WP_013676224.1\|4465269_4467375_-\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NC_015312.1\|WP_013676230.1\|4471542_4472907_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	5.74771e-118
NC_015312.1\|WP_013676210.1\|4446911_4448855_+\|GAF-domain-containing-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	1.03566e-15
NC_015312.1\|WP_013676209.1\|4445541_4446792_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	4.05211e-32
NC_015312.1\|WP_143770969.1\|4450866_4451727_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274928	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family. This protein family consists of luciferase-like monooxygenases (LLM), and include KPN_01858 from Klebsiella pneumoniae as a representative member. Most are from species that lack F420 biosynthesis, so the family is likely to bind FMN as its cofactor. This family is closely associated with a binding protein-dependent ABC transporter, suggesting a role in catabolism. [Unknown function, Enzymes of unknown specificity].	8.61071e-46
NC_015312.1\|WP_013676213.1\|4451792_4452383_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.85124e-11
NC_015312.1\|WP_013676218.1\|4456485_4459464_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	2.74314e-43
NC_015312.1\|WP_013676214.1\|4452410_4453760_-\|hypothetical-protein	gnl\|CDD\|350145	cd18824, GH43_CtGH43-like, Glycosyl hydrolase family 43 protein similar to Clostridium thermocellum exo-beta-1,3-galactanase CtGH43 and Ruminococcus champanellensis arabinanase Ara43A. This uncharacterized glycosyl hydrolase family 43 (GH43) subgroup belongs to a subgroup which includes characterized enzymes with exo-beta-1,3-galactanase (EC 3.2.1.145, also known as galactan 1,3-beta-galactosidase) activity such as Clostridium thermocellum (Ct1,3Gal43A or CtGH43) and Phanerochaete chrysosporium 1,3Gal43A (Pc1, 3Gal43A), and arabinanase (EC 3.2.1.99) activity such as Ruminococcus champanellensis Ara43A. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	7.05173e-23
NC_015312.1\|WP_013676225.1\|4467371_4469033_-\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NC_015312.1\|WP_013676216.1\|4454982_4456122_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	3.69895e-135
NC_015312.1\|WP_013676219.1\|4459568_4460768_+\|FAD-dependent-monooxygenase	gnl\|CDD\|169028	PRK07588, PRK07588, FAD-binding domain.	4.382e-89
NC_015312.1\|WP_013676211.1\|4448869_4450711_+\|GAF-domain-containing-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	5.88815e-17
NC_015312.1\|WP_013676215.1\|4453876_4454986_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176193	cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	3.97592e-115
NC_015312.1\|WP_013676229.1\|4470583_4471285_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.01675e-40

>NC_015312.1|WP_013676219.1|4459568_4460768_+|FAD-dependent-monooxygenase
MTNHGLTGTTVLVSGASIAGPALAFWLARHGAAVTVVEKASELRTGGQAVDFKGAVHRAVLDHMGLYEEIERRATGGHDQTVIDADGRAITTIPGDFTGGDVEIRRGDLAAVLYEHTAETCEYVFGDTVTSLTETADGVHVTFREAAPRTFDLVVGADGIHSAVRRLAFGPEADFVRHLGYHYALADVGDLGLADGAVMYNEPGRMCAVGGPKAPAFFVFATDADDRAARLDAARDDALAQQRMLAEAYRGAGWRVGEVVDRLPGSTGFYLDSISQVRIDRWSSGRIVLLGDSARGNTLGGFGTGLAVVGAYVLAGELAAAGGDHRVAFAEYEAVMRRYAKVAKKGNAGPFLAPRTRAGGWLRNAIFRFRPMLALMLRMTDDYATDVDLRDYPRPSGVS
>NC_015312.1|WP_013676218.1|4456485_4459464_+|winged-helix-turn-helix-domain-containing-protein
MQFGILGPLQVRTPEGEEVAVGGPRPRALLTMLLLRAGRVVPVEALVDGQYGDDPPAGAANAVQAQVSRLRRALPPGTIEFTGGGYRVVADPDDVDALRFARVAAEGRRLLRSGRTAEAAAVLRAALALWRGPAVPDLPPGPDPTRLDGLHLDAREDLAEAELALPGGTSVATLAALAAEHPMREHLRGLLMRALHAAGRPAEALEEYEKVRRLLRTELGADPSPELAEVHAAILRAEHPAPRRRRRVPAQLTSFVGRRVELDRLAALGDARLVTILGPGGMGKTRLAAEHAARTGAPVCWVELAPLGPADDGEAVAAAVLAALGVRDSPTGSDGPLDRLVTALAGQEVLLVLDNCEQVVGGAGAVARTVLTACPRVRVLATSREPLGLTGETLLPLGPLPDAVRLFAERAAAVRPGFVVDDGNAATVEAICADLDGLPLAVELAAARLRTFGVDTLARKLSDDDRFRVLSRGDPTADARHRTLAAVVAWSWDLLGAEEQTLARRFAIFAGGAPAEAVEPVCGVGEDVLADLVDRSLVETDGERYRMLETVRLFCLARLEEAGERDAVAAAHARHHLALAREADPQLRGADQLRWLARLSAEDANLTAALRWSATHDRRTAFALVAALAAYWWLSGRHSRPGPVAAELLAAEVPEGMAEEYVAVVAHAVPRAAPEHWARGEAIMRTHGRELRYPFGAALWGMVAGPPDSSDPDPRLLGSDAWSRALDRLSRALLALLDGRPAEAEPELSTAREAFGALGERWGGAQALDWSALIASRRGEWTRAHELWAAALRLHEELGALDECAEVLCHRAASLLRHGELDAAAADVAHARELWAAAGRTPLPDEALLSSAEIALARGQVAAAREALAGAGSGHAVLTARGRVAAAAGEADEARRLHAAALAAAPPLAAARADVVEGVAGAALLDPGPDPERAAFLLGVAVALRGTAVVGDRHVVGTAAAARDLLGPDAFSAAYARGAALPREEALHCEWR
>NC_015312.1|WP_013676216.1|4454982_4456122_+|CoA-transferase
MTSPGRTYAGLRVVDFTAMIAGPFAAMILADQGADVIKIEKPGGDDSRRLAPFAADGISTIFTTFNRNKRSVVLDLTTDAGRETALRLCDGADVVMESYRPLKFDRLGLSWETLSARNPRLVYCSVSAFGRGPLGAELPGYDPVVQAFTGIVDATGHPGGPSARVPASVVDITTGMWAAMGVMSALARRSESGRGERVEVALVDSGFALMCHQMVNLVATGRPPVKTGAVTPMAAPYETFRCADGELIVAAGNDAIFRRMCAALGVPEVADDPRFGSVGERVVNREALHALLEARTSLHTRRDLEKLLGDAKVPVSAVNRLDEALATPVAQERRMLVDPVDAPPGAPALPRLPFLSPDVALRNPPTPGQHTEEVLREIR
>NC_015312.1|WP_013676215.1|4453876_4454986_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTDARAAVLTEYRAPFTVETFPRPEPEPGALVVDIEAATVCGSDVHVWAGDLEGRLPISLPLILGHEMAGRVTAIGAGADVDSLGNPVRIGDRVVWAHTPCGRCRQCTLDKEPTLCPQRYIGYMSDCSRPPHFTGTFAEVGYVVPGARRLVVPDGVESTWAAAGSCAVRTVVRALDVMGRIEFTDTVLVQGAGPVGLFTTALASLHGPRKLVVVGGPADRLAVAQEWGATDVVSVDEHPDPAARVELVRDLTGGGPSVGFEMAGAPGAGAEGIDMMGRNGRYVLMGTLGGPRQEVDVARIVGHGLRIRGSMSGDIGDYAVALDALDRFSDRFDWNRILGSTYGLSELDRAMDAMRAMAEIKPVLDPSRP
>NC_015312.1|WP_013676214.1|4452410_4453760_-|hypothetical-protein
MREGGRRVTTALAGAVVAGAVVVAGLAGVPTPAAAAAPPPTAQPTALPPAPSAAPSTLPLLVPPTSELPLLVPTSTVPATASAPAPAPTSSVVPTTGPSAPSGVTISGLDLHDGTMLQSGGVDLLYGTMYGCGFEWGVSSPWCGFGVSEASTPAGPWSAPTRLFAPTDVSPFTGTTWQAICGDSGAGCFNPRMLHRSGWGDDDGAWILWFNAPDDFARTRANAYYAMECAGPTGPCGGAGRTTTKPSLHDCTDNGDFSLVPDDPRPPMMLCTMADQTLASERLSASGTAGAGGGSHDLAGLTNTEAPGAYRDPSTGTWILTYSDPNCGYCAGAPTGYATAPGLDGPWTAPANTNPDWGAPPSGRRAISATSCGGQSRTVVTLSGQAYQLIDLWLGTRNETRAGIRLEPLVYRGASAPGTPLQAFAPWTCGAVEGGPHGTGHRGSAASPG
>NC_015312.1|WP_013676213.1|4451792_4452383_+|TetR/AcrR-family-transcriptional-regulator
MQRVLTAKGAETRRRILEGAAELLRTNGTAGVSLERICTSTGASKSQLFHYFPDGRSELFAAIARFEADRVIADQQPYIEDLSTPESWRAWRAAVIARYSELGRYCPVTALVVEISRTGPEAEGIVVDMQTRWHALMTRAVARLWSSGGGGDVAPEAAASVVLAAVQGGASMYQSTGEFVHLERALDGVLAYVGVA
>NC_015312.1|WP_143770969.1|4450866_4451727_+|LLM-class-flavin-dependent-oxidoreductase
MRLGYLTHVSGRGAPAETYRDTIAAAVAAEELGFDTFWVAQHHADESAGLLPSPLVLLAAIATATSRIRLGTGVVAAPLEDPLRLAEDAAVVDTLSGGRLELGVGTGTDAAAAAAFGRDHGARHDETLAVLDRVRTVLRGPRLVPAAPGVAQRLWWATGSGVAIDEAAARGIGVLTGRPADVAGSPVAADLARYWSRAAGSPRVAVSRLVPAGEDPAVTVARLRRDPALHWATELVVQTSPPAVRLTGHITTMRAIADVVAPVLTPGRAARARGTATQRRTLTTTA
>NC_015312.1|WP_013676211.1|4448869_4450711_+|GAF-domain-containing-protein
MPIAAEHSTSTGSLTALLRMLADEAPAEELTAVLDGTDRPGPAVAAALADAGRVRALLERTARREREGQALLQTAADLTSLRPGDDVLVAIVDRARRLLACDSSYIALVDEHTGDAYMRVTAGTRTLALRQVRQAMGYGVGGYVIQTGRPLATSDYLNDERIRHDPHVAAAVAADAVVSIAGVPMTSGGAVIGALFAADRHHRTFDQDEIALLASLAAHAAIVIENARLFERVQADSAGLRAANARLDAHREALERAARAHEELMPMALRRAGLDEFATAVAALLDAGVSLVGVDGSVLAEAGAAPPAAGAGAAREVTVQAGHESFGTLRVHRAAPFDDGDARIVERAAQTAALLVLMRRQTDGVARELRAELVADLVGASAADPDVLQRRAARLGVLDPGRAHCVVVVVGGTLPRRTLLAAAADLADDEGGLAGEQGGLAVLVLPDADAGAAARRVAAALSATTGTPVAAGADGPAGEIAALRDLHPGAARSARLLGALGRAGQGVAADELGVLGALLDDVAPERVRALLDRRIGPLTGYDREHGTPLVETVRCYFAHDRNPPATARALGVHVNTVYQRIARIDAVLGDEDWRSARGSLEMQVVLRFLDLLR
>NC_015312.1|WP_013676210.1|4446911_4448855_+|GAF-domain-containing-protein
MADGDPAPRTAERLAARLLHLLATEAPPAAFDLLAAEVEACPPGPARDEMFLALGSAGRVRDLLAHRRRREKAALALVESARDLAAMRDVDQVLDAMVRRARQLLGTDATYLALRDPERGDVYMRITLGTLTKAIESIRQPVGTGIGGRVVATGVPFATADYLADARLSRDPHVTDAVIEDGIVSIAGAPLRLGDEVIGVLFVANRYERAFDDAEMDLLCSLADHASIVIGNAELFERAERTAAELRAVNEELAERQRALERASAAHEQMMPLALRRADLGELVESVASMLGGTVAAVGVDGGLLVTSGDGDLPSPLPAPPHDAHAAQPGGTPTCWTVPVRAGDETFGHLVLVTDEVPSDADVRTFERAAQTAALMLLIEQQVGAAEHQVRGELIDDLLAAREPDWAALTRRARSSGALDLRVAHTVVVAAATGVTRARLLRAANEYVGVRGGLGTEHDGRVVMVLPRQDPDAVARSVASELERLAGGVVTAGVAGPADSAAEIRARHREAQRCLRLLVALGRHGQGACPTDLGMLGVILDGTTQQQVRALLGRTVDPVRRYDDTHHALLLDTLDAWFAAGQNPRAAARTLQVHPNTVYQRLDRIDLVLGHRRWREGEGAVTMQLGLQLHRLTAEIPLEELVPATGT
>NC_015312.1|WP_013676209.1|4445541_4446792_+|LLM-class-flavin-dependent-oxidoreductase
MKFHWFAQQYYTKLPADFGETVHSSWVTPPISVADPQQVGEDYHLYIRLMQQADTLGWDSLLLNEHHQTTLAMTPSPNLIASVLAATTENAAIALCGNSLALYNPPVRVAEEIAMLDCLSGGRIIAGIVFGTPMDTAFSYGVPPIELRERFHEARELITRAWTAQEPFAFNGKYTQLRYVNTWPRPIQDELPVWIPGSGSPETWDVVNALDYCYGYLSFSGKQSAAPIVGGFWDYTASQSANMNPNRMAFTQIICCADSEKEAEEQYADAVKYFYRQNPTGLEFATPPGYNTLPSIRANLERARTQSAEERTKAARGELSFWEYDELGYIIAGTPERVEQRVRELATELRIGQLITCMHVGDLPEQVAMRNNELFGTQVIPKLRDVWADEEDRWTPRVSQERVAAKFGANAGLPAA
>NC_015312.1|WP_143770970.1|4461523_4461937_-|GNAT-family-N-acetyltransferase
MRDVLAGSGVYEHFFPEWEPVQRRAVGQVCTATGHDVAVAVDGGRVAGFVAARADEAERLGEIVMLAVDPEFQRRGIGGALTRYAADGLAARGMAVAMVETGGDVGHAPARRTYERAGFTPMPVVRFFATLPITGNS
>NC_015312.1|WP_049803462.1|4462053_4464624_-|sensor-histidine-kinase-KdpD
MAVGQGVERVGRAGELRIYLGAAPGVGKTFAMLGEARRRCERGTDVVVGLVETHGRPRTAELLEGLEVLPRREVVRGGNVLTELDVEAVLARRPDVVLVDELAHTNAPGSRHAKRWQDVEEILAAGIDVLSTVNVQHLESLNDVVQRITGVRQRETVPDGFVRRAEQIELVDITPEALRRRLAHGNVYAAEKVDAALANYFQPGNLIALRELALLWVADEVDVALQRYRSDKHIRETWETRERVVVALTGGPESETVLRRAARIAKRAGQADLLAVHVLRGDGLAGAPVGAAARLRTLADDVGASFHTVVGDSGASGVTDSLLEFARGVNATQLVLGTSRRSRLARLFDPGIGARVVQESGSIDVHMVTHDAAGSALRLPTLRSNVPGGRRMLGWVLCVLAPVAATALGVALRGIVGLSTDVVLFFLATVVAALVGGLGPALVAAVLGVLMLNFFLTPPLYSLTIGETENVVTLVAMLLVAVLVALVVDRAARRAEQAARARTEAALLASFARTVLTRADPLPRLLEKVREAFGLRCVALLERGDGAAGWARIAVSGPAECGRPEDAEVDVAVEAGLHLVGTGRSLPAHDRRLLEVVGGQALVALRSQRAAADAVAAQRRAEANETRSGLLSAVGHDLRTPLTSIKASAGSLRDPSLPLSDADRAELAATIEESADRLTGLVDNLLDSSRLAAGAVTPLLEPLGYAEVVARALLGLPGAERIDLDVAEDLPDVCADAGLLERVVANLLDNALRHGDGAAVAVRGSAYADRVELRVVDAGPGVPPRQRDRLFTPFQRLGDRGTGTGLGLSVARGLTEVMGGTLTAEDTPGGGLTVVVSLPAVALRSSGSTAPGSTAH
>NC_015312.1|WP_013676223.1|4464647_4465268_-|potassium-transporting-ATPase-subunit-C
MLSTLRRQTGTGLRLLIVFTIVCGIVYPLAVWGVSRIPGLSGSAEGSVVTAADGTVAGSSVIGVDPVPANPAADPYFHTRPAASAQGVLGPADTTTSGGSNKAADSQDLLHEVEQRRAAIAQREGVAPAAVPTDAVTASGSGLDPDISPAYAALQVARVARVTGLPVAQVQGLVAQATSGRALGFLGEPAVDVTTLNLAVQGALHR
>NC_015312.1|WP_013676224.1|4465269_4467375_-|potassium-transporting-ATPase-subunit-KdpB
MTTSSTTSAATTQPDTDGRDAVRAAAGPVQAGAFRPAQLWASLPDALRKLDPRAQLRNPVMFVVWVGSVLVTVDAIVDPTVFGWLIAVWLWFTVLFANLAEAVAEGRGKAQAETLRRTKRDTVARRLTADGGEERVGGTELRIGDRVVVEAGETIPGDGDVVEGIATVDESAITGESAPVVREAGGDRSSVTGGTTVLSDRIVVEITTTPGESFVDRMIALVEGASRQKTPNEIALTILLAALTIIFLLAVVALQPMSAYAGGLQSVVTLVALLVCLIPTTIGALLSAIGIAGMDRLVQRNVLAKSGRAVEAAGDIDTLLLDKTGTITFGNRRATELIPVGDTSLAELAAAARLSSLADQTPEGRSIVELCARDHGLAAGATADEAVAQFVAFTAQTRMSGLDLPGRAVRKGAAAAVLAWAGTRSDQVTRIADAIGDEGGTPLVVAEAAGPEGGSARVLGIVRLSDVVKPGIAARFAELRAMGIRTVMITGDNPRTARAIAAEAGVDDHLAEATPEDKMELIRKEQEGGRLVAMTGDGTNDAPALAQADVGVAMNTGTAAAKEAGNMVDLDSDPTKLISIVEIGKQLLITRGALTTFSVANDLAKYFAILPAMFAALYPSLGLLNIMGLHSPQSAILSAVIFNALVIIALIPLALRGVRYRPTSAAALLRRNLLIYGLGGVVTPFVGIYLIDLLVRLIPGM
>NC_015312.1|WP_013676225.1|4467371_4469033_-|potassium-transporting-ATPase-subunit-KdpA
MSDTLAGLFQVAALLVLLGVCYVPLGDYMARVFTAERHWRIESMLYRLVRVDASSGQRWPTYAAGVLGFSFVSCALLYLLQRLQPVLPASFGRGPVPPATAFNTAVSFVTNTNWQSYVPEQTLGDTVQMAGLTVQNVLSAAVGLAVAVALIRGFVRSGTDRLGNVWVDLTRGTVRILLPLAFVAAVLLLVMGVTMSLHAGVDTTGVDGAAHTLPLAPTASQEAIKQLGTNGGGIFNANSAHPFENPNAVSNLFQIFLMLLIPVCLTRTFGTMVRNPRQGTVLVSVMGVLWAGLLAVAWYAEMHPNGPAALAAGGALEGKEVRFGIPSSVLFGISTTGTSTGAVNSMHDSFTGGAGGATLLNMLLGEVAPGGVGTGLYGILVLAVIAVFLAGLMVGRTPEYLGKKLGRREVTAAAVSILVMPTIVLIGAGLAIALPGTAGALNNGGAHGFSEVLYAYASTANNNGSAFAGITVTGNFFQSTLGVAMLLGRFVPILAVLALAGSLAAQRRVEPGAGTLPTDKPQFAVLVGGTVVLVAALTFFPALALGPIAEALA
>NC_015312.1|WP_013676226.1|4469032_4469134_-|K(+)-transporting-ATPase-subunit-F
MSTADVVTNVIGGLVALALLVHLTVALLRPERF
>NC_015312.1|WP_013676227.1|4469130_4469301_-|hypothetical-protein
MARPAGPADRRLGRPAGGTGGPRPRSEFPVADLLYTLLLVGVFAVLVLCLRGLERL
>NC_015312.1|WP_013676228.1|4469459_4470521_-|isocitrate/isopropylmalate-dehydrogenase-family-protein
MAYDVVVLPGDGIGIEVTDSGVAVLRAVAAAVGLEVDLEFLDAGAGAYQRTGVAIAEPVMAAVGRADAVLFGAMGLPDVRREDGTEITPQLDIRERYDLVAGVRPSTLLPGIDPVLYARDIDFVVVRESTEGLFAGRRDPRSADPDVEHDRMTITRATSETLFDIAFSLAAARREAGHAGRVTLFDKANVLKSQAFLRTVFDEVAARHPDVETERVYVDAGVMMMVREPERFDVVVMENMFGDIVSDLAAGITGGLGLAPSGDIGRDHAVFQPCHGSAPDIAGLDVANPVGMILSVAMMLDWLGDRHDDGRCLKAAARVRAAVGAALSAGVRTRDIGGTASTSEVTAAVVAAL
>NC_015312.1|WP_013676229.1|4470583_4471285_-|GntR-family-transcriptional-regulator
MTSSNERAADRAYRMIRADIMSGELEGGARLGEANLAERYGLSRTPVRESLRRLQSEGLVEVLPHRGARVVDWRSLDIAAIYDMRAVVEGFMVRRAAVTMSDEEIDRLTTLCDKVERQTAAMELGDPELIDLLAGFNREFHGSIARAAGGEIFAAVRASVVIGPLMLRTVHDYTRADQERSNRHHREILAAFRARSPQWAESVMLAHVYSAKSRLLEGRGEVIGPDAASIEAS
>NC_015312.1|WP_013676230.1|4471542_4472907_+|amidase
MQTPDDPGPLRGPDGWDAAHARYQEIDDRVRAVITWIDGSREDAVAAARRTEAGRSRGPLDGVLVGLKDNIDVAGVVTTAGASFLAHNVAPADATVVRRLREAGAVVSAKLNMAELAWGATTQNLTYGACRNPWDLDRIPGGSSGGSGAALAAGYCDLALGTDTGASVRIPAALNGVVGLRPSVGSISIDGVLPAAKTQDTVGPMARRAIDAARLTEVLTGFDPADPYSVASTGAPATSAIGKPLDGLTVGVARRFFFDGLDDGVGERIETFLGWLADQGTVAADVPDFGAPDAHEHWTRIVGSEGAAYHRERLLASPDDFSPDVLGRVSAGLDVSAVDLVRSLVFRAEYRTRLAHVFTDLDVIVTPVVPVDVPPADGPDSRAQTLQLGRITYPWALHDGPTLSLPIGFHPRSGLPVGVALTAPRFGEAVLFQIACAYQDATDWHRARAVVPTR

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Crispr_ID: NC_015312_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_5

4501412-4501671

Orphan

Consensus_repeat	Method
CCGACGGGCGCAACCTGAGCGTCGCTTTCCCGCCCGGCGACGACAGTGAGGTTGCGCCCGGG	PILER-CR

2 spacers

The CRISPR arrays of NC_015312_5

>merge|NC_015312|5|4501412-4501671|PILER-CR
CGGGCGCACCCTGAGCGTCGCTTTCCCGCGCGGCGACGACAGTGAGGTTGCGCGCGGGATTGCGAGCGAGCGCGACCGGCCCGGATGCGGCCGACGAGCGCAACCTGAGCGTCGCTTTCCCGCCCGGCGACGACAGCGAGGTTGCGCCCGGGGTCGGCAGGCAACACCGGACGCGCCCCCGCGACGCGGAAGGACGACCCGCCGGGCGCAACCTGAGCGTCGCTTTCCCGCCCGGAGACGACAGTGAGGTTGCGGCCGGT

>NC_015312|5|1|4501412-4501671|PILER-CR
CGGGCGCACCCTGAGCGTCGCTTTCCCGCGCGGCGACGACAGTGAGGTTGCGCGCGGGATTG	CGAGCGAGCGCGACCGGCCCGGATGCGGCCGA
CGAGCGCAACCTGAGCGTCGCTTTCCCGCCCGGCGACGACAGCGAGGTTGCGCCCGGGGTCG	GCAGGCAACACCGGACGCGCCCCCGCGACGCGGAAGGACGACCCGC
CGGGCGCAACCTGAGCGTCGCTTTCCCGCCCGGAGACGACAGTGAGGTTGCGGCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013676258.1\|4504934_4505204_-\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_173400108.1\|4502484_4503384_+\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|236227
NC_015312.1\|WP_013676245.1\|4490246_4491041_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015312.1\|WP_013676265.1\|4514872_4515955_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_015312.1\|WP_013676259.1\|4505200_4506316_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_015312.1\|WP_049803466.1\|4512689_4514744_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274912
NC_015312.1\|WP_013676262.1\|4508579_4511453_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|274912
NC_015312.1\|WP_013676246.1\|4491037_4491886_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NC_015312.1\|WP_013676250.1\|4496253_4497429_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
NC_015312.1\|WP_013676249.1\|4494619_4496254_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_015312.1\|WP_063821908.1\|4511619_4512480_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_015312.1\|WP_013676247.1\|4491882_4493565_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NC_015312.1\|WP_013676260.1\|4506337_4507207_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015312.1\|WP_013676248.1\|4493591_4494623_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NC_015312.1\|WP_041761887.1\|4507203_4508583_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349930
NC_015312.1\|WP_013676257.1\|4503380_4504415_+\|4-hydroxy-2-oxovalerate-aldolase	unknown	unknown	gnl\|CDD\|181282
NC_015312.1\|WP_013676252.1\|4498124_4499321_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_015312.1\|WP_041761872.1\|4499466_4500381_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200599
NC_015312.1\|WP_013676251.1\|4497459_4498113_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NC_015312.1\|WP_158511334.1\|4500529_4501192_-\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_041761887.1\|4507203_4508583_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349930	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. This family includes Sso-CP2 from Sulfolobus solfataricus.	1.23314e-82
NC_015312.1\|WP_173400108.1\|4502484_4503384_+\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|236227	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.	6.2398e-174
NC_015312.1\|WP_013676245.1\|4490246_4491041_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.28789e-20
NC_015312.1\|WP_013676265.1\|4514872_4515955_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.53931e-21
NC_015312.1\|WP_013676259.1\|4505200_4506316_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.69955e-22
NC_015312.1\|WP_049803466.1\|4512689_4514744_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	1.52321e-159
NC_015312.1\|WP_013676262.1\|4508579_4511453_-\|FAD-binding-protein	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	1.38018e-122
NC_015312.1\|WP_013676246.1\|4491037_4491886_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	6.8048e-68
NC_015312.1\|WP_013676250.1\|4496253_4497429_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	1.44706e-24
NC_015312.1\|WP_013676249.1\|4494619_4496254_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.40585e-161
NC_015312.1\|WP_063821908.1\|4511619_4512480_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.44965e-57
NC_015312.1\|WP_013676247.1\|4491882_4493565_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_015312.1\|WP_013676260.1\|4506337_4507207_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.98911e-07
NC_015312.1\|WP_013676248.1\|4493591_4494623_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	6.85315e-62
NC_015312.1\|WP_013676257.1\|4503380_4504415_+\|4-hydroxy-2-oxovalerate-aldolase	gnl\|CDD\|181282	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated.	0
NC_015312.1\|WP_013676252.1\|4498124_4499321_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.35754e-133
NC_015312.1\|WP_041761872.1\|4499466_4500381_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200599	cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins. Allantoinase (EC 3.5.2.5) can hydrolyze allantoin((2,5-dioxoimidazolidin-4-yl)urea), one of the most important nitrogen carrier for some plants, soil animals, and microorganisms, to allantoate. DAL1 gene from Saccharomyces cerevisiae encodes an allantoinase. However, some organisms possess allantoinase activity but lack DAL1 allantoinase. In those organisms, a defective allantoinase gene, named puuE (purine utilization E), encodes an allantoinase that specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. PuuE allantoinase is related to polysaccharide deacetylase (DCA), one member of the carbohydrate esterase 4 (CE4) superfamily, that removes N-linked or O-linked acetyl groups of cell wall polysaccharides, and lacks sequence similarity with the known DAL1 allantoinase that belongs to the amidohydrolase superfamily. PuuE allantoinase functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCAs. It appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common features of DCAs that are normally metal ion dependent and recognize multimeric substrates. This family also includes a chitin deacetylase 1 (SpCDA1) encoded by the Schizosaccharomyces pombe cda1 gene. Although the general function of chitin deacetylase (CDA) is the synthesis of chitosan from chitin, a polymer of N-acetyl glucosamine, to build up the proper ascospore wall, the actual function of SpCDA1 might involve allantoin hydrolysis. It is likely orthologous to PuuE allantoinase, whereas it is more distantly related to the CDAs found in other fungi, such as Saccharomyces cerevisiae and Mucor rouxii. Those CDAs are similar with rizobial NodB protein and are not included in this family.	1.21088e-126
NC_015312.1\|WP_013676251.1\|4497459_4498113_-\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	3.8309e-57
NC_015312.1\|WP_158511334.1\|4500529_4501192_-\|FCD-domain-containing-protein	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.5636e-44

>NC_015312.1|WP_158511334.1|4500529_4501192_-|FCD-domain-containing-protein
MTEPEIPTHRTKSELALRVLRERIRSGQLEVGYRLQVDELAAELGMSPTPIREALRLLQADRLVHYEPHRGVVVARHSPERLSDVYAMRMALEPLATRLAIERMTDDQRGELQTIHESFLAAGRAGRGKRMAQLNSAWHLAIYEAAGSDMLRDFTARLWDVFPWRTNWAVEQRSPDSMREHSEVMAAVLAGDAQAGADAMLAHIQAGSASEQPELGEPRT
>NC_015312.1|WP_041761872.1|4499466_4500381_-|polysaccharide-deacetylase-family-protein
MPGPRRDLIGYGATPPAVEWPGGAKIAVSIVVNAEEGSEISWAAGDARNEGLGEIPYGMPAEYRDLCVESIYEYGARAGVWRLLRLFEEYRVPTTFYAAAVAFEQNPELAKAVVGGGHEVCSHGWRWEEPWVLSREEEREHMAAAIASFERTCGTRPVGWYCRYGPSVHTRELLVEEGGFLYDSDAYNDDLPYYVSVGDKRQLVVPYTMVYNDVKYAMPPGMASPTDFFDVCRRGFDELLREGRAGRPRMMSIGLHPRWAGQAGRTSALREFIEHAQRESDVWFATREQIARFWLENHPDEGAA
>NC_015312.1|WP_013676252.1|4498124_4499321_-|CoA-transferase
MTDLPLQGLKVVDAASIFAGPVAATLLADFGADVLKVEHPRGDSLRSMGWNVDGESLFWALVSRNKRCITLKLSAPEGADILKKIIADADVFVENFRPGTLERWGLGPDVLHEINPGLVILRTTGFGQTGPYANRPGFGTLAEAMSGFAHINGWPDKPPALPPFALGDCIAGFTGCFAIMFALWWREHGGNGKGQVIDLSIYEPMFWMLGPQTILYDKTGEVVGRSGNHTPYSAPRNAYQTKDGRWLALSATAQSIADRVVRLVGRPDFAEQPWFAGNPGRIAHTAELDEAIGGWIAERTAEEVLAEFETAEGAIAPAYTAADIVKDPQYLARETIVRVPHEGLGDVLMQNVVPVLSDTPGKVRHAGAPKGSSNDEVYREQLGLTDEQLAALEADGII
>NC_015312.1|WP_013676251.1|4497459_4498113_-|isochorismatase-family-protein
MSDNGFEAVGEFYAERGIGAAAGAGERPAVLVVDVSRAFTSSAYGVGADDAPAVPHIAELLGRAREAGAPIVFTTIAYAPGEDAASFAAKVPALRELRTDDPAAVEVHPDLDRRPDELVLVKKFPSAFFGTHLTSYLVQRGIDTVVVTGCSTSGCIRASVIDAVSYGFRVVVPEECVFDRAEEPHRANLFDIGSKYADVLPRQDVEKYLLSHARGDR
>NC_015312.1|WP_013676250.1|4496253_4497429_-|sugar-ABC-transporter-substrate-binding-protein
MLSGTSMKRMATVGAAALMLTVVAACSSGGSSSGDAAAAGGGASCDLTAVNAALDKYSAVPEYKEPGPAFDMSKAAGKTIFNIQESSANPFTQALTTSMTQAAEKVGMKVVDYPNQGDHTQWIQGMNAAIAQKPDAITLTGGTISPTYFQPQAAAAKAAGIPIITVLNEDLTQPQGPEVTARVAQPYDLAARLSADFVIKDTNCAGNVLVLTSKEVIGSPASIDAINDEFKKYCPNCKLTFQNVSVPDWSTQITNIVRSAIQTDPNLNYVVPLYDSMSQFVVPGIQLAGATGKVHISTFNGTPFVLKMMQDADVVRMDVGENPAQVGYAVVDQVGRIISGAGPIASGDEGIQLRVFTKTNVAEAGNPPELGKGYGDSFADSYLKLWGKAAG
>NC_015312.1|WP_013676249.1|4494619_4496254_-|sugar-ABC-transporter-ATP-binding-protein
MAVPAGSGGAPRAGALPVVEARGVSKSFAGVRVLDSVDLDVLPGEIHGLLGENGSGKSTFIKVLAGFHDPDPGSRLRINGEDVALPLPPGAFRDHGMSFVHQDLGLITSLSVLENLRIGSFSRSRNWAIGWRRQRAEARRLFEEFDVDLDPAARVADLDGTQRALLAIVRAVHEMRTLRGSTRTGPGMLILDEPTVFLPETGRRQLFSLMREIAGGGSAVLFVSHDLDEVREITDRATIFRDGRLRATVETATVSDTELVQLIIGRELPDHSGEREEVVPTAATGAMAVEDLSDERVESVSFALGPGEVLGLTGLLGSGFERIPYLLFGAFPAASGTLRKGAEVLSLPGMDPVKAIAHRMALIPADRQRDGSVGSVSVRDNAMLQVIDRYSTWHGLSRARLARDCQDTLHRFDVRPPVPGLAYQSLSGGNQQKVLLAKWLAAEPEVLLLHEPTQGVDIGARAQIYDVVHEAARSGCAVLCASSDYEQLAAICDRVLIFDRGRVARELFGDEITKDRIAHECYTLADRAVPAGPVGPTEGEGEDR
>NC_015312.1|WP_013676248.1|4493591_4494623_-|ABC-transporter-permease
MTRTSNSEPATDVVVEPGRSSSATVARSLAQRFSIVIALVVVVVVFGALRPGTFLTTSTLQGILGSQAVLVVLTCALLIPLTAGDYDLSVAGVLMTSQMLIGVLNAQQGMNIWLVIVICLVTGAVIGLLNGAFVLLFGVDPFIVTLGTGTILSGAVLWLGDSTTISGISSGLTDWVIVNRFLGVPLAFWYGLVITAGLWYFLEYTAAGRRLLFVGRGRAVSRLSGLRVTRIRWGALVASATLAALAGILYAGTTGAADPVSGEAFLLPTFAAAFLGSTAILPGKFNSWGSFIAVYFLVAGTTGLQMLGAQSYVSDLFYGGALVVAVCASRYSRRKEVREAGSL
>NC_015312.1|WP_013676247.1|4491882_4493565_-|dihydroxy-acid-dehydratase
MPFHERPSRALYAGPERAAARSYLRNIGFTPDDLDRPVVGVVHSWTGTMPCNLNHRDLAVHAAAGVRSVGYTPMEVNTIAISDGITMGTPGMRASLVSRELVADSVELVARGHMFDGIVGIASCDKTVPAMAMAMARIDRPSVLLYGGTILTGRFRGREVAVHDVFEAIGAHAAGTFTDADLDEMEAAACPGAGACGGQYTANTMAMVMEVLGLSPARVNGIPAVDADKPEAVAAAAALVDTVATNDLRPSALLTRPAFENAVAAVAASGGSTNAVLHLIALAAEVGVPLTLDDIDRISRRTPLLCDLMPGGRYSAADLHAAGGTMLLVARLVEGGLVDGSTPTVTGRTLGEEAADAVESPRQRVVAPLAEPFAAEGGLVVLRGNLAPDGAVVKVTAHTPRSHTGTARVFDGERAALDAVLGGAVGPGDTVVIRHVGPRGGPGMPEMLQVTSAIMGRGLGETVALVTDGRFSGATRGLMVGHVAPEAAAGGPIGLLRTGDRIVLDADTRTIATDADLTTRTPPPAPGHEFTRGVFAKYAATVGSAAGGAVTTPSSNGAPA
>NC_015312.1|WP_013676246.1|4491037_4491886_-|CoA-ester-lyase
MTDPRSLLFVPSNRPDRFEKASRSGADAVILDLEDSVGVSQKVASRDNLQQAADLAAAAGQSVYVRVNPVDTEWHTGDLAAAARIGARGVIVPKCEDADVVAGIDRDLAAGLELVLILETAAGVLNAVALARPSDRVRRISFGAYDFALDMGVVPEQAHALMTSSRIHVAMAAVAAGVQPIDTAFADVRDPGAMRRQTEEAHGMGFTGKFAIHPDQVPIVNEVLSPSPAEIDTAQRIVAAFDEAERDGIAAITVDDKLVDYPIAQRAQATLERAAQFGLVAS
>NC_015312.1|WP_013676245.1|4490246_4491041_-|alpha/beta-hydrolase
MSTTARRSASGLDLHVHTGDGSGKAPIVALHPWFGCWQFWLPVVELMPERDWVLVDMYSGAGTIPADDGAFDGLAAAITSATEEYTDRPVVLMGNSTGGLLAQVIAIAGRPALDSLVLVGTGATAAGVKAPFRATLGEWLDAGGTAAPASTAAVVRSLVYRDPPAEDMRLYAEAVETADYPFLSAVLRGVLAGDVVDRLPEISVPTLVVRGTEDAARTEEHVATLVAGIPDCRAVEIAEAGHSPMVDTPREFAAAVRELLGDEA
>NC_015312.1|WP_173400108.1|4502484_4503384_+|acetaldehyde-dehydrogenase-(acetylating)
MPKVPVAIVGPGHIGTDLLVKLRRSPVLDVRYVAGIVESEGLARAREAGVAASAGGVDWLLAQDPLPRIVFEATSAKAHLANAPRYEAAGIRAVDLTPAHLGPMVCPAVNGEDHLDAANVSMITCGGQATIPMVAAVSRVTPVPYAEIVASIASRSAGPGTRANIDEFTHTTGGAVAEVGGAARGKAIIVLNPVEPPMIMRDTVFCMIGADADRAAITASVHDMVLRVQEYVPGYTLRAEPQFDEPTDEWGGHARVAVFLEVKGNGDHLPPYAGNLDIMTAAAARTGELMARAELGALA
>NC_015312.1|WP_013676257.1|4503380_4504415_+|4-hydroxy-2-oxovalerate-aldolase
MTKRALRNDVRIIDTTLRDGSHAMAHRFTETQVRDTVRALDGAGVEWIEVSHGDGVGGSSFNYGFSGTDEMTLIAAAREEARQARIAVLLVPGIGTVDDLKRAHDAGAEMVRVATHCTEADVSPQHFAAARDLGMETVGFLMMAHRTDPADLAKQARIMVDAGCECPYVTDSAGALLMHEARARFEALLAEVGDEALVGYHGHQNLSMGVANSVIAYETGVRSIDGSLCALGAGSGNSPTEVLAAVFDRLGVDTGLDAGALLDAAEDVVRPYLQRWPKMDRNAIVQGWAGVYSSFLLHAERAAERYKVPAHEILRRCGELGYVGGQEDMIIDVAIGLAAERAGS
>NC_015312.1|WP_013676258.1|4504934_4505204_-|hypothetical-protein
MIDIDDVVEGSEPAFLGSATVDQLAAMVLTLGMELSVLAARVAELEGRDPATDSQSASSLLDRLFANLRPSSGHARPLVAERLDLAVRP
>NC_015312.1|WP_013676259.1|4505200_4506316_-|class-I-SAM-dependent-methyltransferase
MARIALDTLGDDDRRRIDYLTAMRRLWSTEVFGRLRDEFDTLAAREGAPTTLEEAGELVERCPSYAWFGFLERGAQVLKWRVVNDVVARNWETLGEDLRPPHLARAELDPELELPGWYRDHDIHCQPGGVWGAAPSALVYEIGTQVLHIGRNRGLELHRRFTATFPGETYRRIVDMGSGFGKSTRPFKERYAEADVIGIEFSGPCVRLAATRADDDGLEITFRQGDAAATGLPDGTVDVVTGTMVLHEMPPDVLRATFAEAARILTPGGIVRFLEFSRTGDLFRDAVMEDHAWRQNEPFMPGLMEFDVVRELSAVGLAGARWVPFDERTGELLPEGFPERAEWHLPWAVLEAHKPALAASTTPPAPAEGAA
>NC_015312.1|WP_013676260.1|4506337_4507207_-|alpha/beta-hydrolase
MTAADAGWGVSTVPTARGRVGVRLRPAADHGVVTPLVAILHQSPLSGWTHEPVLDHLGHRGPVAVLDTPGYGLSDPLDPATDDLAVYAATLWDAIEIVRAGRPVVLVGQHTGGHLAMIMAAAHSGVVAAVVFHGVSLYTDDERAERAARYAPDIENAGDGTHLATIWARLAHLYPDVDIALRNRAVCDYLVARPGYASAYRAVFATPVAPMLEAFRTTGIPSAVLIGSADLIATRQDRVARELGSRVVRLPGLTDFAPWEAPADFAAALDELVDELLTQGSGPGGPHEH
>NC_015312.1|WP_041761887.1|4507203_4508583_-|M20/M25/M40-family-metallo-hydrolase
MTPAAPAQERVAAVWEAIDASFDGYLDELEELCRFRSRREEPDGMLATKEWIERRLRALGASIEVVESARAYPYLLARVGTGERSLLNFNHYDVEVEPPGPDEAWTTPPYEPARRDGRMFARGIADDKAALLSRIHVVDAFVKAGVELPVEVRFLIEGKRTLGAPALAEVVDCFPDFVRADGALWENSWSDFDGRPLLKLGEKGILYLELRCRALDRDLSSQNAILLPQAAARVTAAVAALTRSTDGRHVPGFLESVTPWGEIDAATLAAMPFDREYLIGRAGESLRESLTAVDAPAYTVRTSPTIVLSWIHAGPPAGSVALGVPAECSAGIEVRLVPGQTTDGVLAAFRSFLAGEGLDTGLEIEVRRAGEPESTDSSGWFAGVVAAAAELAHGVLPVLEATTVWIGTRALVAAAGVPVVGVGIARPDSGVDGPDENILIEDYRLALRHLAAIIVGMAT
>NC_015312.1|WP_013676262.1|4508579_4511453_-|FAD-binding-protein
MTDRNDAPPPERVFRPLTLGPVTLRNRIFVSAHTTNLGERHEVSDRLVAYHRERAAGGVGLVVTEGLRVHPTSLKRPEALSVWSDDAVAPLRRLTAAVQGEGAAIFAQILHSGREAADDYTRTPSWGPSPIPWSRGAAVPHAMTTDEIDELVDCFAGGVLRAAAAGFDGVEIHLGHGHLLQQFLSPISNGRDDEYGGTPANRARLVERVLTRTRGLVPAHMAFGVRISAEEFVDGGLGVDVMSQYAAQWASRYRLDFVDVSHSAYVGGPSLSTQMADMSHGPAPFAHLGKAVRDRLPDDVATLLACRIDSLDVAEDVLAAGCADATAMTRAHIADPGLNRKHRGGEVVRRCTSCNQLCIGRSSGGLPISCVVNPEVGLEEAWREAYAAADRVVTGGRPRLLVVGGGPAGMEAALTATRWADVTLVEREPALGGALRTARALHGRSGWARLVEDQERTCRECGVELRQGVAFDAGLLTAEPWDGIVLATGAVVGPRWSDDRDPVRCFGSGVPDPAGVRRAAVHDDRGGWEAWGVVAHLVHHGVETHYVTPLQSLAPGVTIYSRLGLLAGLRASDLLHVHLMTTVSGWRDRVLTLRASLPDTETAVADVDALWDAGVATPAAPRRLPVPHRVVGDAYAPRGAGWAVYSGRLGALRILADIRHRDDPVARSTAQRGLDADRRVAHVVPGRTVKIWFQKHTIIGRNPWLDETYPRHATAMLGDRADVTFVGLPGAVYDDQIPADYVRFGQIEVFFSWYFASQAVKAERAGYDAYVIGTSQDPGLAMARSLVSIPVLAYGETAFTLARTHGLRFGVVGFIPELEEALTANIRALGLADSCVGFRYLEGGRDLVTSATRDGRTDALAAAMDEAATTLRRTGAQCIVPGEGLPNEMLWAAGIHEVGGLPVIDCDGLVMLTAEMHARARRLRVWAPDDDSYDTRRAPDEVIDRMTEIFSPGGGRW
>NC_015312.1|WP_063821908.1|4511619_4512480_+|IclR-family-transcriptional-regulator
MQVPEATGGTSSSERVADILLLFSDGPRTIGVTRAARELGLSKAVVHRILQSLTGRGLVAYDAASREYGLGPAAASLGSRALRDSDLRAVALPHLVDLRDRLHETATVSAKVPGGRLFLDQVVGAHEITMSVEVGRRLPLHAGAVGKCILAFSTPDEIDLALSRDLRAVTQATVVDPDRLRAELARIRADGHAASVGEREAGAASVAAPVLGRADVAVGAVSVCGPRFRLTDERIAAVVPDVVAAATLVTDALAGRATPGGPRRPAGPDSATGRSPLDRDGQSLTF
>NC_015312.1|WP_049803466.1|4512689_4514744_+|FAD-dependent-oxidoreductase
MPYGSPEQGERVDAVKAVLSPVTIGGVPLRNRVVVPGHTTNFGHANLPTRRHVDYHRERARGGVGLIVTEAVRVHPTSAGRHISLGSFDDSSIPAFAEVAQAVQAEGAKIFAQIMHAGRQANGDATRTVAWSASPLRWTSGAQVPRAMGRRDLDTVVDAFGAAATRMTRAGLDGLEVHLGHGHLLQQFLSPVTNQRDDEYGGSLGNRMRLSRRVLETVRSATDLPVGIRISADEFLPGGLDVAQMIEIVGLLREEFPLAYVHVSHSAYHGSWSLSTQMADMSFGHAPFRHHAAAFRRALPGLPVIAVCRLDTLPEAAELVADGDADLVALARPHIADPHLVRKVAEGRPDEIRNCLACNQGCIARVEQSLPISCVVNPEVGAEGEWAAHRERAATAPARRVLVVGGGPAGLEAALSARRAGHTVRLVEAADRLGGQLRTAARVGGRERLVLLVDDLERAVRDAGTEVVTGHRVTPAEVLDGGWDDVVVATGSRPARRELPGGPRVVDTWTAVELVEAEEAPTGAVLVLDDDGGWPAASLAERFARRGAEVHLVSPSAPLSPKITTYSKLALVPRLSDLGVHVHLMCTPEAAGPDAVDLVEVVGGTRARVEGVTLVVDAGSGSADDELHRALDALVGNGPGPRLHLAGDANSPRTALEAVYEGRLAGAVHTTVHDPAPFLLALTR
>NC_015312.1|WP_013676265.1|4514872_4515955_+|class-I-SAM-dependent-methyltransferase
MLDIEERLTLDERSSVDFVLSLRKRWSDTIYPALVEEFVATGADPATAGDADTALHDLPLYPWFSHLERVQQKMLWKIAGDAVIARREELLGQLEQAPAGPEGSLRLDPDLVLPDWYTDYDIHVQPGGVFSDDLSAYVYEFGARIVMLRDNDGYKFHQLFVTTALPELPEATRVVDLGCGFGKSTRPLKLRYPTAEVIGIDLAAPNLRLAHAESADAGIEVSYRQADARSTGLDADSCDVVTGTMLLHEMPASVIEETIAEAARIVKPGGTVAFLEFQPTGEALRDVTVVEHAERNNEPFFHDLFGSDLVALCARYGLTDARWTPFDERLEGMRPQGWGHRPEWHFPWAVLTATRPAEEN

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Crispr_ID: NC_015312_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_6

5042629-5042715

Orphan

Consensus_repeat	Method
CGCAACCTCACCGTCCTGCCCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_6

>merge|NC_015312|6|5042629-5042715|CRISPRCasFinder
CGCAACCTCACCGTCCTGCCCGGCCCCGGATACGACGCCCAGGTTGCGCACCAACCACCGGCCGCAACCTCACCGTCCCGCCCGGCC

>NC_015312|6|5|5042629-5042715|CRISPRCasFinder
CGCAACCTCACCGTCCTGCCCGGCC	CCGGATACGACGCCCAGGTTGCGCACCAACCACCGGC
CGCAACCTCACCGTCCCGCCCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_143770590.1\|5034127_5034928_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_015312.1\|WP_083845265.1\|5043329_5045183_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223839
NC_015312.1\|WP_013676767.1\|5045277_5046111_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379120
NC_015312.1\|WP_013676770.1\|5047954_5049151_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100084
NC_015312.1\|WP_013676772.1\|5050463_5050724_+\|DUF2631-domain-containing-protein	unknown	unknown	gnl\|CDD\|371308
NC_015312.1\|WP_143770592.1\|5036920_5038237_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NC_015312.1\|WP_013676762.1\|5040569_5041034_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NC_015312.1\|WP_013676774.1\|5051763_5052402_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NC_015312.1\|WP_013676757.1\|5034924_5036214_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NC_015312.1\|WP_013676773.1\|5050740_5051712_+\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|240135
NC_015312.1\|WP_013676760.1\|5038296_5039673_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NC_015312.1\|WP_143771005.1\|5036144_5036984_+\|DUF1365-family-protein	unknown	unknown	gnl\|CDD\|377778
NC_015312.1\|WP_041759979.1\|5041688_5042546_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NC_015312.1\|WP_013676768.1\|5046209_5047352_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NC_015312.1\|WP_013676769.1\|5047460_5047952_-\|nucleotidase	unknown	unknown	gnl\|CDD\|319805
NC_015312.1\|WP_013676765.1\|5042863_5043265_-\|DUF3054-domain-containing-protein	unknown	unknown	gnl\|CDD\|378616
NC_015312.1\|WP_013676755.1\|5033204_5033981_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_015312.1\|WP_013676761.1\|5039669_5040503_+\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|226275
NC_015312.1\|WP_013676763.1\|5041095_5041677_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NC_015312.1\|WP_165965798.1\|5049154_5050402_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_143770590.1\|5034127_5034928_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.46742e-05
NC_015312.1\|WP_083845265.1\|5043329_5045183_-\|hypothetical-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.81309e-63
NC_015312.1\|WP_013676767.1\|5045277_5046111_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379120	pfam13312, DUF4081, Domain of unknown function (DUF4081). This domain is often found N-terminal to the GNAT acetyltransferase domain, pfam00583 and FR47, pfam08445.	1.51349e-46
NC_015312.1\|WP_013676770.1\|5047954_5049151_-\|site-2-protease-family-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	3.71194e-47
NC_015312.1\|WP_013676772.1\|5050463_5050724_+\|DUF2631-domain-containing-protein	gnl\|CDD\|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	8.18967e-25
NC_015312.1\|WP_143770592.1\|5036920_5038237_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	1.75023e-113
NC_015312.1\|WP_013676762.1\|5040569_5041034_+\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	5.50575e-48
NC_015312.1\|WP_013676774.1\|5051763_5052402_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	3.80118e-19
NC_015312.1\|WP_013676757.1\|5034924_5036214_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	3.41933e-151
NC_015312.1\|WP_013676773.1\|5050740_5051712_+\|ATP-dependent-DNA-ligase	gnl\|CDD\|240135	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.	4.71849e-105
NC_015312.1\|WP_013676760.1\|5038296_5039673_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	3.4223e-102
NC_015312.1\|WP_143771005.1\|5036144_5036984_+\|DUF1365-family-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	1.78986e-78
NC_015312.1\|WP_041759979.1\|5041688_5042546_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	2.38905e-142
NC_015312.1\|WP_013676768.1\|5046209_5047352_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NC_015312.1\|WP_013676769.1\|5047460_5047952_-\|nucleotidase	gnl\|CDD\|319805	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases. This family includes the C-terminal domain of the bifunctional enzyme T4 polynucleotide kinase/phosphatase, PNKP. The PNKP phosphatase domain can catalyze the hydrolytic removal of the 3'-phosphoryl of DNA, RNA and deoxynucleoside 3'-monophosphates. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.43988e-28
NC_015312.1\|WP_013676765.1\|5042863_5043265_-\|DUF3054-domain-containing-protein	gnl\|CDD\|378616	pfam11255, DUF3054, Protein of unknown function (DUF3054). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.03044e-13
NC_015312.1\|WP_013676755.1\|5033204_5033981_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.50771e-40
NC_015312.1\|WP_013676761.1\|5039669_5040503_+\|DUF1295-domain-containing-protein	gnl\|CDD\|226275	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only].	3.91166e-71
NC_015312.1\|WP_013676763.1\|5041095_5041677_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	2.97514e-09
NC_015312.1\|WP_165965798.1\|5049154_5050402_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0

>NC_015312.1|WP_041759979.1|5041688_5042546_-|type-I-methionyl-aminopeptidase
MPARTLLTPGTVSPTRPVPAHIPRPEYVGKDAPSRSTEPWVQTPEVIEAMRVAGRIAAQALALGGEAVKPGVTTDEVDRVVHEFLVDHDAYPSTLGYRRFPKSCCTSLNEVICHGIPDSTVIQDGDIVNIDVTAFIGGVHGDTNATFLAGEVSEEDRLLVERTREATMRAIKAVRPGRELNVVGRVIESYARRFGYGVVRDFTGHGIGRSFHSGLVVLHYDQPDVDTVLEPGMTFTIEPMVTLGTVDYDIWDDGWTVVTKDRQRTAQFEHTVLVTGDGAEILTLL
>NC_015312.1|WP_013676763.1|5041095_5041677_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAKVYKGITARITDWIHEQPMFFVATAPLSDGGMVNVSVKGMRGTFRVLDDHTFAYADLTGSGAETVAHLRENGRICVMFVSFDERPDIVRLHGTGRVVLVGEPGFDEALAPFGEAAERRRLGVRAVVTVDVSRVSDSCGYAVPTMELLGERDLLDSWTDRKDDASMRAYREAKNTHSLDGLPAIPARAAAGD
>NC_015312.1|WP_013676762.1|5040569_5041034_+|peroxiredoxin
MKSGDMVDEFELTDETGATRTLSGLLADGPIVLFFYPMASSGGCTREACHFRDLAAEFAELGATPVGISGDDVSAQHTFASAHSLGYPLLSDPGHTVAKRFDAYRRWLPGGLHTRRRTFVIGTDRRVVAEFSSETNFDAHADEALAALRRVRAA
>NC_015312.1|WP_013676761.1|5039669_5040503_+|DUF1295-domain-containing-protein
MTDVGAFPWSQFLTNLWVTAVAVLVVMLAALAVAALRGGRHDGIDVVWGAGFAVVALVTLVMSAGDGETWRRWLTTALTVVWGLRLAWHIGRRNHGKPEDQRYVALMSRAPGNPYVYAFTRIYLTQGVVMWVVSLPVQLAQYGTGGGLLGTVTAVLGVLSWCVGFFFETVGDAQLARFTADPGNKGTVLDRGLWRYTRHPNYFGDAAVWWGLTLLGLHQLPGLVGLASAAIMTFLLVRGTGAKLLESSIGERRPGYADYVRRTSGFIPRPPREPARS
>NC_015312.1|WP_013676760.1|5038296_5039673_+|class-I-SAM-dependent-methyltransferase
MPRPVAPQLVDLLERVIGAALPIRIRAWDGSEAGAADDPAAPVAVLRHRRGLRRLLWAPGELGLARAFVAGELDVEGDLADGLSRFWALARAHGLSGVTLSASDRIAAAALAARLGAVGPPPRPPAAEARLRGTMHTRRRDRAAIAHHYDLSNEFYAFLLDPRMTYSCGYWTQEPGPGYRLVDAQRDKLDLVCRKLGLAPGMRLLDVGCGWASLLVHAAQHYGVTAVGVTLSARQRDLGAARVAELGLADRIEIRLQDYRGVDDPPFDAIASIEMGEHVGDVNYPTYAAQLHRLLRPHGRLLLQQMSRGAAGRDDNPGGGAFMERYVAPDMSMRPLGSTLNLLEAAGLELADVHSLREHYVTTVRPWLDTLQDRKAEAIRLVGEEQYRVWLLYLAGASSAFAENRMGVHQMLFVRPGADGTSGLPRSRAAVLGPDPALDRLAADVRPGELTATVAPTR
>NC_015312.1|WP_143770592.1|5036920_5038237_+|class-I-SAM-dependent-methyltransferase
MAARPARRPPSVAPVPGGRPVSTEPVHRPSPAARALPRPHEGVWPGLAEVPVAPLRARVAESLFRRAVRTLPVTVVMPDGETLGTGGPRMDIRRPGAFFARLGTSSKIGFGEAYMVGDWTSPTPADLLTPFAARLAQLVPPALQRLGRRWVEARRPDDEVNTLEGARRNIHRHYDLSNDLFALFLDETMSYSAAWFPPGGDDLAAAQRRKIDGILDMAGVTEGMHVLEIGTGWGGLAVRAARRGARVTTLTISAEQASLAERRIAEAGVADRVQVLLRDYREARGSYDAVVSVEMIEAVGERFWPTYFATLDRLLRPGGRVGLQSITMPHDRLMVSRGDHTWIHKYVFPGGLIPSVEAIEANLAAHSSLRIARRRSLGQDYARTLAHWNARFQERRACVAALGFDETFRRMWEFYLAYCEAGFRVGYLDVFQFSLHRR
>NC_015312.1|WP_143771005.1|5036144_5036984_+|DUF1365-family-protein
MGLPRGRRRVGRAGRRRARGDLVTRTARPDAPAATGTVVPAVYDARVRHVRRAPGIASGRSFDHAARTWLVDVDDLPVLPRPLRALARFEARDHLGDPRRTIRENVDGYLATHGIDLRGGRILMLACPRVLGHAVNPLSVFWCHDRGGAPVCAIAEVHNTYGERHCYLLRPDERGRAEADKAFYVSPFLTLDGRYRMRLPVPDERLAIAVTLHQGPGVALAATLSGTRRPPASHVRSLLRHPLATRRTSALIRRHGIALWLRGLPVVPRPSHPSQEGVQ
>NC_015312.1|WP_013676757.1|5034924_5036214_+|FAD-dependent-oxidoreductase
MNHPYDGARPTVAVVGAGVSGLTAAHVLRRAHDVTLFEADDRLGGHAHTHELAGSDGAVRGVDSGFIVHNTRTYPTLLRLFAELGVTTQDADMSMSVRCDGCGLEYAGARRAPGLFPQASNLARPAYLRMLGEVVRFHRHARRLLTTADADADAVTLGSFLAIGGYSRYFVDHFMVPMVAAVWSAGAAVSLRYPARYLFTFLAHHGMLGIGGSPQWRTVTGGSQRYVERIVKNLHVVRTGTAVRALRRTAGGVEVHDAAGASRRFDKVVVATHPDQALALLADPTADETAVLGAFSYSHNETRLHSDVTVLPRRAGARASWNYLKPTCTADDTAGVLVSYDMNRLQRLDIADPYVVTLGGADRIDETRVIAKMSYEHPIYTPESVAAQRRLPELTTAVTAYAGAYHGWGFHEDGAASGVRAAAALGVTW
>NC_015312.1|WP_143770590.1|5034127_5034928_+|alpha/beta-fold-hydrolase
MRLRPRAEHLVPPRRGTRRASPGGLVPDPSDDETLPRLETFGPVPTAPDGVVLVLHGGRSVSRDPARRGLAYLRMLPFARAVGTPRTAVHLLRYRYRGWNGPARDALHDAEWAVAQAGRLHPGAPIVLVGHSMGGRAALGAAGGQGVAAVCGLAPWLGADDPVDQLAGRSVLIAHGDRERTTDPAESYAYAVRAAAVTDRICRFEVHGDGHAMLRRARDWTSLVRRFVLGELGIEPEDPEIANAMQEPPPGGLARALSRTPIGAAR
>NC_015312.1|WP_013676755.1|5033204_5033981_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MADTDRPLTVREKLRLTLRRRRSGSGFWYGLGIELIWPFAMFLPKIVFRGGEHVPRSGGALLALNHVSFADPIFDTAFVVANGRMPRYLAKSELWKVPVVRSVLAGGRHIPVHRATSRATDAYRDAVEALNRGEVVAFYPEGTYTADPDGWPMKAKNGIGRIAVVTGVPVIPVANWGTQEALPPGALPRLFPRRRVRVVAGPPVDLSAFVGKPRTRTNLDAATAAIMTDITKLVADLRGEQAPDAAYDPGPERPAAAS
>NC_015312.1|WP_013676765.1|5042863_5043265_-|DUF3054-domain-containing-protein
MATTIRLPRVFALSAVADVVAVVVFAAIGRASHDESDGIVGILAVAAPFLVGLLVAWATPWVRARPQGFRAGVVVLAATVVVGLGLRAVFLGRLPLTFALVTLAALAVLLLGWRGVSALVAATALRRSARTGR
>NC_015312.1|WP_083845265.1|5043329_5045183_-|hypothetical-protein
MGILGSVTAPRRVPGRLRLVLLAGVLVLSLVGASCALFGPSSEQKAVQAYLDAWTRGDDAAAATLTDDPAAAQTLLAAVRASLAPAGLSASVAQVRSTGDAATASVDVAWDLGQNRRFAYLDEITLRAAPDTDAGWVVHWSPAVVHPRLGAGQRLALVVDTPEPAPVVDRGGTPLLTPTPVVNVLLDRTAAGDLGAVTGALAAALAPLVPGITPQSIAEGAAGVPAGQGYSVAVLRQTDYLTVKNAIHDLPGVRFATQTRLLAQSAGFGSQVLAPVRTEVTPQVSGVAGWSVQVVGGSGATIATLQDQPATSGSTVTLSLDHAVQAAAEDAVETLPQQAALVAIAPSTGDVLAVAQNAPADAAGAIALTGRYPPGSTFKIVTATAALETLGVTATTPQPCPGTTTIDGRLVPNENRFDLGTVPLTKAFANSCNTTFSQLAAQLSADALPAAGLQLGFGADFTVPGLTTVTGAVPPAAERVQRAEDGFGQGDVVATPFGMALVAATVAKGAPVVPQLIRGRPTDVPKAATAPPPQPVLDQLRTMMRAVVTEGTATGLARSGAVFGKTGTAEYSANGANRAHGWFVGYRGDVAFAVLVVDGGSSGPAVGVAQRFLAALG
>NC_015312.1|WP_013676767.1|5045277_5046111_-|GNAT-family-N-acetyltransferase
MLRVAGARLLDDRDRAGVRAALEADPVAACMVAARIEVAGLDPWRLGGELWAVGPRLDGLCFSGANLVPLRGERSALRSFADRARRHGRGCSSLVGRAELVLPLWDDLAPAWAPAREVRPDQPLMVLAGPPAVTPDPLVRPVRPDEIDLYLPAAIAMFTEEVGVDPRAGDGGAGYRARVAELVGAGRAFARFEDGQVVFKAEIGALSSQVGQIQGVWVHPSRRGHGYGTIGTAAVADRLAAMGRISSLYVNGFNHVARSVYGRIGFTQVASFATVLF
>NC_015312.1|WP_013676768.1|5046209_5047352_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MSVSLGMPAAPAPTLAPRRKTRQLQVGPVGVGSEHPISVQSMTTTLTADVNATLQQIAELTAAGCDIVRVACPSQDDADALPAIARKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGNIRKFDDQVKEIAAAARDRGIPIRIGVNAGSLDKRLLQKYGKATPEALVESALWEASLFAEHDFHDVKISVKHNDPVVMVRAYELLAEQCDYPLHLGVTEAGPEFQGTIKSAVAFGALLSQGIGDTIRVSLSAPPVNEVKVGRQILESLNLKPRRLEIVSCPSCGRAQVDVYKLADEVTAGLTGMEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPEHAIVETLIEEAMKIAETMAGEGEPEVVVG
>NC_015312.1|WP_013676769.1|5047460_5047952_-|nucleotidase
MSAQDLPDRPLAVFDIDGVLADVSHRLHHLDTGRWERFFTAADRDPLLDEGARRLRAAMVDHDVVYLTGRPERNRRLTERWLARHGLPTGPLYMREDDDYRPARWVKREVLRDLAQTRTVASVLDDDPAVVRVLVEDGWPVELATWLPHSSTLQDAQERKGRT
>NC_015312.1|WP_013676770.1|5047954_5049151_-|site-2-protease-family-protein
MAFALGVVVFALGIAISIALHEAGHMVTAKAFGMRVRRYFIGFGPKIFSFRRGETEYGMKWIPAGGFCDIAGMTALDEVTEEERPRAFFRKPTWQRVVVLSAGSITHFLIAIVLIYALSLTSGLPNVSDTPVAGQISCAANQTSPSALEPCGPGVATPAADAGLRSGDTIVSVAGTPTPDWAAAVAAIQASGGPTPIVVDRDGQRLTLTMDIPKVQRLDPQTGRPREVGAIGVSQQLVFHYNALSAVPATFSYTGQMFAQVWQGLLMFPEKVPRLIDAIGGGQRDLETPVSVVGASVIGGDLAERGLWQVFVQLLVVLNLFVGVFNLLPLLPLDGGHIAVNLYERVRDWVRSRLGKVPMPPVDYTKLLPLTYVVILIGGAVSLLTLTADIVNPIRPFE
>NC_015312.1|WP_165965798.1|5049154_5050402_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MCGGERGRAMSDRSEHPGAAGTAPRSVLVLGSTGSIGTQALDVVTAARGPGGARFTVAGLAAGGGDVGLLAAQAREHHVRRVAVADPEAAARLRAELPGVEVLDGPGAATELTATTPADVVLNGITGSRGLGPTLAALDAGETLALANKESLVAGGPLVTRAAKPGQIVPVDSEHSALAQCLRGGTADEVARLVLTASGGPFRGRRREELAHVTLDEALKHPTWDMGPVVTINSATLVNKGLEVIEAHLLFDVPYDRIDVVVHPQSIVHSMVTFVDGSTIAQASPPDMRLPIALALGWPARVPGAAAACTWDAAQSWTFEPLDDDAFPGVRLARAAGTTGGCLPAVFNAANEEAVAAFVAGTLSYLGVTEVVERALAAADGWSGDPATVDDVLAAEGWARARARELAVSIGSEGL
>NC_015312.1|WP_013676772.1|5050463_5050724_+|DUF2631-domain-containing-protein
MASSSRELEKRPQVDPLDEPSAEWGWHGGFPNGARVAGVVVAILLPLLMIGHPTNWTEILWMCIPAALILLGVIGGTIRRRNAWRR
>NC_015312.1|WP_013676773.1|5050740_5051712_+|ATP-dependent-DNA-ligase
MAERSSPAVELEVGDRTVRISNPDRVYFPARGETKLDLANYYMAVGEGIVRALRDRPCMLHRFPTGVTGEKVHQKRLPRGAPDWVPTVRVHFPRFDRHADELCVAHVADVVWAVQMSTVEFHPWNSRATDTEKPDEWRIDLDPMPEARFDDVRRVAAVAQEVLDELGATGWPKTSGGSGMHVYVRIEPRWGFSDVRRAAHAFAREVGRRAGDLVDLTWWRKDRDPASIFVDYNQNARDHTIRSAYSVRGVPEAVVSTPIRWDEVADVDPRDFTIATVPGRFAELGDLHAGIDDAVFVLDELLEWADRDARDTPDEEPPDLDEL
>NC_015312.1|WP_013676774.1|5051763_5052402_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MEQDQAWVVIAQQRRALADLLDDLTPQEWEAPSLCERWRVRDVAAHLAMTPHSPGIGRILYEGLRARGDFDGLNHDMAVRYAARPTAELVAGLRADAENRSRPAITTWRNLLFDTIVHVQDVALPLGRGVPMPPDGTVAGLDRVWRMGWPFWARRRLRGLRLVATDADWAVGDGDEVRGPAGALLLLVTGRGAVAQPLLDGPGTARLTTSAG

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Crispr_ID: NC_015312_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_7

5125188-5125274

Orphan

Consensus_repeat	Method
CCGAGCGCAACCCCACGGTCGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_7

>merge|NC_015312|7|5125188-5125274|CRISPRCasFinder
CCGAGCGCAACCCCACGGTCGCCCCGCGCGCCCGGGACAGCAGCGAGGTTGCGCACCCCGGCCCGAGCGCAACCCCACCGTCGCCCC

>NC_015312|7|6|5125188-5125274|CRISPRCasFinder
CCGAGCGCAACCCCACGGTCGCCCC	GCGCGCCCGGGACAGCAGCGAGGTTGCGCACCCCGGC
CCGAGCGCAACCCCACCGTCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013676852.1\|5132746_5133844_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NC_015312.1\|WP_013676853.1\|5133861_5135778_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341270
NC_015312.1\|WP_013676843.1\|5123766_5125146_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|236890
NC_015312.1\|WP_013676840.1\|5118633_5120835_-\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NC_015312.1\|WP_041759985.1\|5125368_5125959_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NC_015312.1\|WP_083845478.1\|5115012_5115462_-\|NADH-quinone-oxidoreductase-subunit-K	unknown	unknown	gnl\|CDD\|236136
NC_015312.1\|WP_013676837.1\|5112861_5113410_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NC_015312.1\|WP_013676845.1\|5126000_5126699_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_015312.1\|WP_041759986.1\|5130812_5131757_-\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NC_015312.1\|WP_013676842.1\|5122603_5123770_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|236893
NC_015312.1\|WP_013676847.1\|5128311_5129490_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|236893
NC_015312.1\|WP_013676836.1\|5112598_5112865_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|181179
NC_015312.1\|WP_013676841.1\|5121104_5122559_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183043
NC_015312.1\|WP_041759983.1\|5113483_5115016_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237165
NC_015312.1\|WP_013676846.1\|5126856_5128308_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183043
NC_015312.1\|WP_041759984.1\|5115479_5116034_-\|cation-transporter	unknown	unknown	gnl\|CDD\|237154
NC_015312.1\|WP_041762221.1\|5116030_5118394_-\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|237154
NC_015312.1\|WP_013676848.1\|5129486_5130776_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|236890
NC_015312.1\|WP_013676850.1\|5131911_5132148_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366431
NC_015312.1\|WP_013676851.1\|5132153_5132729_+\|DUF3515-domain-containing-protein	unknown	unknown	gnl\|CDD\|378794

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013676852.1\|5132746_5133844_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NC_015312.1\|WP_013676853.1\|5133861_5135778_-\|AMP-binding-protein	gnl\|CDD\|341270	cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme). Acetyl-CoA synthetase (ACS, EC 6.2.1.1, acetate#CoA ligase or acetate:CoA ligase (AMP-forming)) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation.	0
NC_015312.1\|WP_013676843.1\|5123766_5125146_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	1.14203e-102
NC_015312.1\|WP_013676840.1\|5118633_5120835_-\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NC_015312.1\|WP_041759985.1\|5125368_5125959_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	2.14266e-12
NC_015312.1\|WP_083845478.1\|5115012_5115462_-\|NADH-quinone-oxidoreductase-subunit-K	gnl\|CDD\|236136	PRK07946, PRK07946, putative monovalent cation/H+ antiporter subunit C; Reviewed.	5.32244e-41
NC_015312.1\|WP_013676837.1\|5112861_5113410_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	4.44887e-26
NC_015312.1\|WP_013676845.1\|5126000_5126699_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.50095e-38
NC_015312.1\|WP_041759986.1\|5130812_5131757_-\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	4.99112e-119
NC_015312.1\|WP_013676842.1\|5122603_5123770_+\|FAD-binding-protein	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	7.20782e-45
NC_015312.1\|WP_013676847.1\|5128311_5129490_+\|FAD-binding-protein	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	4.06604e-50
NC_015312.1\|WP_013676836.1\|5112598_5112865_-\|sodium:proton-antiporter	gnl\|CDD\|181179	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed.	7.10353e-16
NC_015312.1\|WP_013676841.1\|5121104_5122559_+\|FAD-binding-protein	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	6.04426e-175
NC_015312.1\|WP_041759983.1\|5113483_5115016_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|237165	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_015312.1\|WP_013676846.1\|5126856_5128308_+\|FAD-binding-protein	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	6.36366e-172
NC_015312.1\|WP_041759984.1\|5115479_5116034_-\|cation-transporter	gnl\|CDD\|237154	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed.	8.17387e-44
NC_015312.1\|WP_041762221.1\|5116030_5118394_-\|DUF4040-domain-containing-protein	gnl\|CDD\|237154	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NC_015312.1\|WP_013676848.1\|5129486_5130776_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	7.66181e-101
NC_015312.1\|WP_013676850.1\|5131911_5132148_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|366431	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain. The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold.	2.05039e-09
NC_015312.1\|WP_013676851.1\|5132153_5132729_+\|DUF3515-domain-containing-protein	gnl\|CDD\|378794	pfam12028, DUF3515, Protein of unknown function (DUF3515). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.	1.10234e-40

>NC_015312.1|WP_013676843.1|5123766_5125146_+|4Fe-4S-dicluster-domain-containing-protein
MTSTPAGSADTNLPRTGPSAFDEQRPPQRELLDDCVHCGFCLPTCPTYQLWGEEMDSPRGRIYLMDLAEKGDIALEGSFATHIDRCLGCMACVTACPSGVQYDRLLESVRPQVERNVPRDRDDKLFRDAVFALFPYKRRLRAAALPGALYQRLARVPAVRKLVDGGTQRLRGTRFSRLAALESLLPPVTVKDAFATLPAVTPAVGERRARVALLSGCVQDVFFHRVNEATVRVLAAEGADVIVPRDQQCCGALELHAGREPAALARARRTIETFERLLASGVDHVVTNVAGCGSSMKEYGHLLADDPAWASRARTFSDSVRDVHEVLAELLADEPRAPRHPVQARVAYHDACHLGHAQGVRVQPRDVLRSVPGVEVVDIPEAALCCGSAGIYNMVMPDAADELGARKAANVRSVRPDVVVTANPGCLLQMGKHLDGAVPLLHPVQLLDASIRGVPLPRR
>NC_015312.1|WP_013676842.1|5122603_5123770_+|FAD-binding-protein
MTRATPTTVRPTDLAALRAAVLDSAGPLAVAGAGTAAAWAGDLQHVDTVVDVSGLSGIVVHNPGDMTVAVKAGTPLRDLAAELAGHGQQVSFDAARVARGATVGGLVATADAGPGALVHGTLRDLVIGMTIVLADGTVARTGGHVIKNVSGYDLAKLVHGSYGTLAIVAEVVLRLHPVPAASATVVLDCPLDEAVAHAARVLARPLEPAALEWCSAGSGPATSDGRLLARIEGTAAALPARVERLVDTLGPGAAEADAGEWEAHASTVRGRPGQAVLRIGARPSRIGGIVGALPGADGPGAGVTVGLGTGVATVALPADADAVESAHLAVHAAGGTSVLRDRPAGFGGPAWGPPPSAIAMLRSVKRAFDPDGRLGPGRFAPWPLENSR
>NC_015312.1|WP_013676841.1|5121104_5122559_+|FAD-binding-protein
MALDDAARAALARAVGVENVVDDPVGRRAYECDGLTGYRVVPDLVVLPRDAAAVAAAVRACAEHRVPFVARGAGTGLSGGALPVADGVVISLSRLKRVLDVDPVDRRAVVEPGVTNLEITAAAAAHGLYYAPDPSSQQVCTIGGNVAENSGGAHCLKYGFTSNHVLAMEVVLPDGSVVTLGGDSAEQAGPDLRGVFLGSEGTLGIATSITVRLLRVPETVRTLLADFPSVAAAGDVVSDIVAAGIVPAAVEMMDTLAIEAAEEAVHAGYTVGVPAALVVELDGPAEECDVQFEQVKAICDRHGCTRLHIAGSGEERAAIWRGRKAAFAAVGRISPDYFVQDGVVPRTRLTEVLARIADMGEQAGLRVANVFHAGDGNLHPLVLYNAAAGETERAERLSGSIAELCVELGGALSGEHGIGTDKACSMPRMFGEEDLATMGRVRAAFDPDGICNPGKVLPTPRLCGERPGKYRPHPLEESGLIDRL
>NC_015312.1|WP_013676840.1|5118633_5120835_-|malate-synthase-G
MAATPTARDTGRTAGAQDAGLQVDPALDRFVTEELLAGLDDITPARFWSALAELQADFAPRVREVLERRDALQARIDGWHAEHPGPVTGATRDAYARFLTDIGYLEPEAQPRLTVTNVDPEIAEVAGAQLVVPATVPRYALNAANARWGSLYDALYGTDVLPLDHELAPGYDERRGAQVIAEADRLLDELFPLADGSHADVDAYTVADGALVPALADPAGFAGHRGDAAEPTAVLLRRNGLHVELRIDRAHRVGRGHHAGVADVVLESAVTTIVDLEDSVATVDGEDKASAYRTWLGLMTGNLVASFEKGGQTVTRRAEPDRDHTAPDGSTVTLPGRSVMLVRVVGHHMTTDAVRTAAGDQVVEGLLDLLVAATAALHDLRGLGPHRNSRTGSVYVVKPKQHGSAEVALTVEMFAAVERALGLPERTLKVGVMDEEKRTSVNLEACIAAAQDRVIFVNTGFLDRTGDEIHTCFAGGPVVRKGDMRSATWFGAYEDRNVDVALRAGFADVAQIGKGMWAKPAAMREMLEAKIEHPRAGADTAWVPSPTAATLHALHYLRVDVGERQREIAARPLTDRALLLEPPLLGPGSTGRPSADDVRHELETNAQSILGYVVRWVGLGIGCSTVPDLEGVGLMEDRATLRISSQLIANWLAHGIVDEQTVRETFARLAAFVDEQNAREPGYRPMSDDLEASESFQAALELVFTGREEPNGYTERVLTAWRRKAKENAGRQA
>NC_015312.1|WP_041762221.1|5116030_5118394_-|DUF4040-domain-containing-protein
MLALVAAHLVLACALPAVAARSTRAAFGLAAVLPAVTLVWAAAMAPAVLGGAAVEENLAWAPALHLTFDVRLDALALVMIVLVSGVGAVILAYSAFYFGRRSPDASRTSALLLFFAGAMLGLVVADDLLTLYVFWELTSIASFLLVGQSGLHRANRRAAVQALLVTVFGGLSMLLGFVLVGESAGTYRISAIVASPPTGGAVTAGIVLILLGVLTKSAQAPFHPWLPAAMAAPTPVSGYLHAASMVKAGVFLVARLSPAFASSAEWWLPLVVLGLATMLIGGWRALGATDLKRLLAFGTVSQLGFLMVLFAVGGRLAAVAGAALLLAHGLFKATLFLVVGTVDKVTGTREIGALSGLGRAMPGLAAASALAAASMAGIPPLLGFVAKEAAFEAFLLEGGLRGGVVEVGLVAGSVLTVAYSARFLWGAFATKPGVDPVTPAPASPGLTVPLWITSLAGLVLGLVAPVAAVLAEAYGDTLPARTAEEAGYHLALWHGFNLALGLSAVALAGGLLLHTGRDRVAALTRRLHHRVSAQRGYELVVSGLERLAVLVTGRLQVGSLPVYLATVLLMVIALPGIGLVLGWAWPGDVPVVHEWIQIPLGIVVVAAALAMVRARRRFTAVLLVGAVGYGIGGLFIVDGAPDLALAQFLVETLALVAFVFVLRRLPAHFTERRRPRRAIQVRKGVLAAVAGITVGVFGIVLSGARTAPATASEEFVRLAPETGATNIISAILVDFRALDTVGEITVLLVAASGTASLVLATRHDRRRRGKVRASGSGTPAHEKEVSG
>NC_015312.1|WP_041759984.1|5115479_5116034_-|cation-transporter
MSAEDTRVPWPRWDSPTEDWMLPGDCPVTSERTLLLELAARILFPAVLVFSLYLLLVGHYGPGGGFSGGLVAGLAFVLRHIAGGSSEGAEIGARIRVRPPVVVGVGLCVAVVTALVPAAFGAPVLSSTKVSVHVPLLGEFEIVSSLALDVGVYLLIVGVVLDLLRSLGSGIERDALDAESEAAS
>NC_015312.1|WP_083845478.1|5115012_5115462_-|NADH-quinone-oxidoreductase-subunit-K
MAVVVAALYAVGFYLLLQRSLMRVLLGVVVLGHGANLLLQLTGGPPARPPILGGSAEGSAPLADPLPQALALTAVVITFAMTTYLLALGYRSWVLVGHDEVQDDLEDRRIARRRTPTASMGEEADEQGDEVGVDPGSAAASGDPVGDRS
>NC_015312.1|WP_041759983.1|5113483_5115016_-|Na+/H+-antiporter-subunit-D
MSMLPALPVLLPLLGAGATVVVGRWAWAQRVIGVTVLAAVSVVAAVLLVMADRGGPVVAEIGGWAAPVGIVLVADRLSALLLLISTVVTLAVLVYAIDQRIADYGRRTASTTFHPIFLVLSAGVSLAYLTGDLFSLFVAFEIMLAASYVLITRRTDARRIRSGMTYVIISLTSSLLFLTTVALVYAATGTVNLADLAERVAALPTGLQTVLALLVLVTFGIKAAIVPLHFWLPDSYPNAPAPVTALFAGLLTKVGIYALLRTRTLIFPEGHPSVLLLVLASVTMIVGVLGALAQNDLNRILSFLLVSHIGFMIFGLAVTDAAGAGGTALYVVHHITVQATLFLVSGLITRRTGTVSIDAMGGLAKRAPLLAVLFAIPALTLAGVPPTSGFVAKLALLQAGAGDGVATSVVAGIVILASLLTLYAVVRVWVRVFWGEPREPLPDNDPDDDLVVGTARTATPMYVATAALVAVSLTIAAAAGPLSAVTTRAGDDLVARTPYLGAVLGQEGAR
>NC_015312.1|WP_013676837.1|5112861_5113410_-|Na+/H+-antiporter-subunit-E
MSHRVRQVFWLTVVWVLLWGTLRPATIVGGVLVAVLVAWLFPLPPMRDPIPVRPLRLLSLASFVALDLLRSGVQIGWETLRGGGRGPAAAIIAVPLLAHSARVVAVLAGAVALTPGSYVLQIDRTRATFWVYALGVGGDGAVERVRREVLVLQRKVIAALGTADELAASDRGLAAARYRSAP
>NC_015312.1|WP_013676836.1|5112598_5112865_-|sodium:proton-antiporter
MTVVFTLTLAMLAAAALLTTLRLLRGPTTLDRITALDVLVVVIVCGGAVYVAVNRDSSNIPLLAAVALIGFVGSATAARLVERRERHR
>NC_015312.1|WP_041759985.1|5125368_5125959_+|DinB-family-protein
MPATRPDLAAQLLAQLDWHWTNLVRPRLAGLTDDEYLWEPAPNCWNVRRRDPAAQAPQPGSGPWTVDFEFPEPDPPPVTTIGWRLAHVIVGVFGMRVASHFGGPPIGYDDFPYAGTADEALAQLDDVHAGWSAGVGGLDDAALARPVGPAEGMWAEHTMSELVLHINREAIHHAAEVLLLRDLYRSRREGGGRRAR
>NC_015312.1|WP_013676845.1|5126000_5126699_+|GntR-family-transcriptional-regulator
MAVGAAANDPAPRRGGAKLRALEYVKDRILTGDFRGGELISEGEVAAALGMSRTPVREAFLRLEAEGLLRLYPQRGALVVPVSPEEVRAVMEARLVIEHFAARAVCRRDATARAEVVTALGVQLDRQRAAGADLRGFLDADRAFHTVIVEAAGNPILADVYSSLRDRQLRMIGESAVRDPRRTATIVTEHERIAAAVGHGDADALLDGVRAHLSGTVMALGLSPDPTLLTAD
>NC_015312.1|WP_013676846.1|5126856_5128308_+|FAD-binding-protein
MDRVALQAELVAALGADAVLTDPVSLRAYECDGLTGYRVVPACVVLPRDTAQVAAAVRVCARNGVPFVARGAGTGLSGGALPVADGVVISLQRLRAVVSVDPVNRRAVVEPGVTNLDISRAVAAHGLYFAPDPSSQQVCTIGGNVAENSGGAHCLKYGFTVHHIHEIEVVLPDGTVTTLGGPAPHQGGYDLLGAFIGSEGTLGIVTRITVKLLPRPAAVQTLVADFPSVEQAGDTVTAIVAAGIVPAAVEMMDALAIEAVEAAVSAGYSRDTAAALIVELDGPPAEVTAQFAEVERLCHEHGTTKVHVAPTPEARAAVWKGRKAAFAAVGRISPNYFVQDGVVPRTRLAEALTRIGELADEAGLRVANVFHAGDGNLHPLVLYSEARGEHERAEHLSSSIAELCVDLGGSLSGEHGIGTDKACSMPRQYDDADLATMTLLRRAFDPDDVCNPGKLLPTPRLCGERPGPHRPHPLEAAGLIERI
>NC_015312.1|WP_013676847.1|5128311_5129490_+|FAD-binding-protein
MPTTRFTPSDVDELRAVLADTTASHPRLLVEGAGTAATTGGRPDPADAVVDTTGLSGVLRYNPADMTVAVRAGTPLTQVQAELAGQRVAFDPARGRRGATVGGLLATADGGPARQQFGVLRDLVIGATVVLADGTVAHSGGHVIKNVAGYDLAKLFHGSLGTLGVVAEVVLRLHPLPRHVVTVAVPGPAEEATRTGTDLLGRGIEPAALEWTPDSGLLVRLEGTEEGVLARAGAVEAVGGTILSDDAQAAAWAGVDAVADPAAPGTTVLRAGTLPSDGPGFVATLAAAAARAGADLAVSSGVGTGVHTVALTGGDHAAVLAAAHAAAGPAVTVLRHDGLDPDAPLWGPPPAAVALLRAVKQRFDPTGRFGAGRLSPWLAPVRDVPATEGVPA
>NC_015312.1|WP_013676848.1|5129486_5130776_+|4Fe-4S-dicluster-domain-containing-protein
MSTSFDARRPPQREVLDDCVHCGFCLPTCPTYAVTGTETESPRGRIYLMDLAAQGTIGVDEAFGEHIDSCLGCLACVTACPSGVQYDRLIESVRPQVERNVTRSRADRLFRGLVFALFPYPNRLRVAALGGLVYQRSGLRALVRRLGLLDRLPARLRALESLLPPVTVRALLARTPERTRPPGAARLRVGLLAGCAQRVFFGDVNAATVRVLAAEGCDVLVPRDVQCCGALSVHAGREDEGLARARATIEMFERYRLDVVVANVAGCGSTLKEYGALLADDPAWAERAAAFSATVRDVTELLAELTPQAPRHPVAARVAYHDACHLANAQRVREQPRAVLRAIPGLQLQDVAEAELCCGSAGIYNLVQPVTAEELGQRKAANLEAVAPDVVVTANAGCLLQIRRFLDAGIPVLHPVQLVDASIRGCDPV
>NC_015312.1|WP_041759986.1|5130812_5131757_-|thiamine-phosphate-kinase
MNTLRDVGEFGLIRRVTADRVQPGTTLLGPGDDAAVVEARDGRVVACTDVLVEGVHFRLDWSAPDDVGRKAAAANLADVAAMGAVPTALLVGLACPRDTPVETLEGIASGLWAEASSAGAGVVGGDVAAGPAIVLSVTALGSLEGRPPVTRAGAKPGDVVALCGRIGWAAAGLDVLHRGFRSPVAVVGAHRVPEPPYAAGPQAARAGATSMIDVSDGLLADLGHLAAASGVTVDVSTSALVVPPRLVEVASALGVDPLEWLLTGGEDHALAATFPPGAVPEGWTVIGGVTEGDAAVLVDGAPHEGAAGWDHFAG
>NC_015312.1|WP_013676850.1|5131911_5132148_+|Lrp/AsnC-ligand-binding-domain-containing-protein
MVQAFILVQTEVGKAASVASAIAGIPGVVSAEDVTGPYDVIVRAEAEDVDLLGQLVVAQVQGVSGITRTLTCPVVKLG
>NC_015312.1|WP_013676851.1|5132153_5132729_+|DUF3515-domain-containing-protein
MRQAGTDVRTPRSPAVVVAVALPVLLAVAVAVLAIVNRDAGKPPPPTTDTTPLAAAPVDAPDASGPQCTALLAALPATLPGGDGQLATRPLADPAPAGVRAWAAPSRPVVLRCGLPRPAELTPTSALVVVDGVSWLQLPDDVPDPVQSSWVAVDRPTYVAVTTPATAGSGPLQAISDAITATMPATPIAVR
>NC_015312.1|WP_013676852.1|5132746_5133844_-|D-alanine--D-alanine-ligase
MGERRTRVAVVFGGRSSEHTISCVSAGSVLAHLDRDRFDVVPVGITPDGAWVLGTDDPARLRIDGRTLPVVDGTGAALALPGDPTRGGLVRLDRDRAGEVFSGVDVVFPVLHGPFGEDGTIQGLFEMAGLPYVGSGVLASAAGMDKEFTKKLLAAEGLAVGSLVVLRPGTQSLTAAQQERLGLPVFVKPARAGSSVGITRVTSWDRLDEAVAAARVHDPKVLVEAAIVGREVECGVLEYPDGTVRASLPAEIRLVSGSAEFYDFDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGLARVDFFVGDDGAPVVNEVNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTALARGTGLR
>NC_015312.1|WP_013676853.1|5133861_5135778_-|AMP-binding-protein
MSDDSLAQLLDTPLRPLPPGWTVADRVESLAKARALEPDDYWEWVARQQRWTREWDTVRTGGVSDFRYFEGGLINVADNCVDRWTEDPATADRAAIVWEGEPGEVRTVTYAELADEVSRLAAGLLDLGVGEGDVVAVYMPNLVEAFTTIHACNRIGAVYTVLFSGFGEEAVASRLQAARAAVVVVADASYRRGRRVQLLSTLRSALTRCPSVRATVVVDRTGDGVALREGERSYADVLAAGAGGAPAVPLDPNAPSFLIFTSGTESRPKGVVHSVGGFLLGSWANAHWQVGREDGDVYWVAADVGWLTFPIQAVVGGLACGMTVACFEGALDTPTPARFYEICERHAVTKILAAPTLIRMLRKFGDDLAAAHPLPGLKLITAQGEPLDGDTFAWATDTFDVPVINAYGQTETGSTWTYPVYGVDPLKAGSAGTPVPGHTFAIVDDSGEPVPPGVKGNLVLTGPFPTLCRTVWGDHQRYLDTYFAKFPGSYATNDEAVLDHDGHIWVLGRADDVINVAGHRISTMEIEAVVTSDPDVVEAAVVGVPEETKGTVPIAFVTLRSSSDDGVADRIRALVAGEMGGYARPDRVYVTPAMPKTRTGKTMRRLLRDVVVHGGPTGDTSAMEDPAALEAVTEVVRG

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Crispr_ID: NC_015312_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_8

5375679-5375765

Orphan

Consensus_repeat	Method
GTGAGGTTGCGGCCGGCTGATTGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_8

>merge|NC_015312|8|5375679-5375765|CRISPRCasFinder
GTGAGGTTGCGGCCGGCTGATTGCGCGACCTCACCGCTCCGTCCAGCGGCCCGGCCGACAGTGAGGTTGCGGCCGGCTGGTTGCGCG

>NC_015312|8|7|5375679-5375765|CRISPRCasFinder
GTGAGGTTGCGGCCGGCTGATTGCGCG	ACCTCACCGCTCCGTCCAGCGGCCCGGCCGACA
GTGAGGTTGCGGCCGGCTGGTTGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013677063.1\|5369925_5370492_+\|DUF1707-and-DUF2154-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NC_015312.1\|WP_013677073.1\|5380525_5382046_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_015312.1\|WP_013677065.1\|5371574_5373095_-\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214880
NC_015312.1\|WP_013677076.1\|5384911_5385871_+\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
NC_015312.1\|WP_143771027.1\|5383082_5384486_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_015312.1\|WP_041762356.1\|5375804_5376725_-\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235084
NC_015312.1\|WP_013677071.1\|5378960_5379707_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NC_015312.1\|WP_013677069.1\|5376775_5378257_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NC_015312.1\|WP_013677074.1\|5382021_5383035_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NC_015312.1\|WP_013677077.1\|5386045_5387308_+\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	unknown	unknown	gnl\|CDD\|133031
NC_015312.1\|WP_013677064.1\|5370517_5371540_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236135
NC_015312.1\|WP_013677070.1\|5378325_5378937_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_015312.1\|WP_013677066.1\|5373133_5374606_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NC_015312.1\|WP_013677062.1\|5369448_5369880_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377622
NC_015312.1\|WP_041762347.1\|5368122_5369064_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NC_015312.1\|WP_013677067.1\|5374616_5375561_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225915
NC_015312.1\|WP_013677058.1\|5365293_5366421_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NC_015312.1\|WP_013677059.1\|5366455_5367460_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_015312.1\|WP_173400114.1\|5379818_5380529_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_015312.1\|WP_013677060.1\|5367530_5368097_+\|SRPBCC-family-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013677063.1\|5369925_5370492_+\|DUF1707-and-DUF2154-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	4.35452e-11
NC_015312.1\|WP_041762356.1\|5375804_5376725_-\|o-succinylbenzoate-synthase	gnl\|CDD\|235084	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.	7.06973e-139
NC_015312.1\|WP_013677073.1\|5380525_5382046_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.37134e-60
NC_015312.1\|WP_013677065.1\|5371574_5373095_-\|CHAD-domain-containing-protein	gnl\|CDD\|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	4.68638e-39
NC_015312.1\|WP_013677076.1\|5384911_5385871_+\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	4.34474e-57
NC_015312.1\|WP_013677066.1\|5373133_5374606_-\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	1.06451e-138
NC_015312.1\|WP_013677071.1\|5378960_5379707_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	6.95318e-89
NC_015312.1\|WP_013677069.1\|5376775_5378257_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.15465e-99
NC_015312.1\|WP_013677074.1\|5382021_5383035_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	5.23314e-73
NC_015312.1\|WP_013677077.1\|5386045_5387308_+\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	1.82616e-73
NC_015312.1\|WP_013677064.1\|5370517_5371540_-\|PHP-domain-containing-protein	gnl\|CDD\|236135	PRK07945, PRK07945, PHP domain-containing protein.	0
NC_015312.1\|WP_013677070.1\|5378325_5378937_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.23657e-13
NC_015312.1\|WP_013677058.1\|5365293_5366421_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.61752e-73
NC_015312.1\|WP_013677062.1\|5369448_5369880_+\|cupin-domain-containing-protein	gnl\|CDD\|377622	pfam06172, Cupin_5, Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.	2.81821e-53
NC_015312.1\|WP_041762347.1\|5368122_5369064_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	2.25352e-81
NC_015312.1\|WP_013677067.1\|5374616_5375561_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|225915	COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only].	1.32848e-38
NC_015312.1\|WP_143771027.1\|5383082_5384486_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.88448e-55
NC_015312.1\|WP_013677059.1\|5366455_5367460_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.56519e-68
NC_015312.1\|WP_173400114.1\|5379818_5380529_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.70072e-88

>NC_015312.1|WP_013677067.1|5374616_5375561_-|FAD-dependent-oxidoreductase
MSVVVVGAGLSGIACATELVAAGVPVRVLDRADHVGGRMATCTVDGRAVDTGAAYFTVRDPEFAQVVGRWRTAGLARPWTVELTVLGGVRPGRSPGPVRWAAPRGLRSLVEHLARDVPVELGRTVRHVGPGPTVDGRPADTVVLAMPDPQAARILDHATEAYAAVRGRPWRPVLTVVAGFAERTWPQLPAAFVNGHPVVSLVADDGNRRGDAAPVLVAHSTAEVARRHESDPDAGIPEVVEAVGELLDVRGAPVWTRAYRWRSAAPERDRDVPFLLGSDGVALAGDGWGSSRIETAWRSGTLLGRELARRHASP
>NC_015312.1|WP_013677066.1|5373133_5374606_-|FAD-binding-protein
MVHTAEPVSPLDRPFGDDRPARLAALAADPAAQAVLDELHAALPADRLLTDPDTIGPYVHDEAEWAEYGTPAAVVRPRSTDEVAAVVRSCARHRVAVVPRGAGTGLSGGANAVDGCIVLSLERMNEIVEIDPAERLAVVQPGVVNDHLRAAAAQQNLWYPPDPASAPWSTIGGNVATNAGGLCCVKYGVTRDYVLALEVVTAAGEVVRVGRRTAKGVVGYDLAGLMVGSEGTLGVVTEVTVRLRPLRTTPPRTVVGFFDSLADTGAAVAAVTAAGLQPAIFELIDRHSLQAVNEWRNAGLPENAAALLLAQTDLPEPAATAEAEGILAAFEACGAKDAVISTDAVEADALFEARRMVYPALEQRADAVLTEDVCLPRGRLADMLAEVQDIGARHDTFIANVAHAGDGNLHPLIIVEQGDDEARRRAQAAFEEIIDAAIARGGTVSGEHGVGLLKRGGMRREQSPQVLAMQRAIKAALDPLSILNPGKVVG
>NC_015312.1|WP_013677065.1|5371574_5373095_-|CHAD-domain-containing-protein
MGTAADTSATAVRTFRAPAGAGAPGLTGLRGVSVSAEPAVVTETQRYDTDDLRLAAAGIRLELASEPGAAQWRLTLPGEDDVIRLPATPPDVEGADPHEPPGELDELVRGVRRDRPLRPVARVRRVRTTTRLLASGSPRAALDREEVSVATLGDSTTVDTWTEFTLYPPARGGVLAAELERRLADVGAEPAEPAAQDRLDELLAPARPRRVRRGKKGTAGAVLVDHLARQVDTLATQDIRVRRDEDDAVHQMRIAARRLRSALQAYRPLLDRARTDPLVDGLRELGRTLAPARDAEVLRKRISDAIDELDPALVLGPVQAQVARHFARVEAEARAAVLAELDGPGYAAMRTALDDLLADPPLSARARRPAKKELPKVAARSARRLEKAVAHMRADPVDEAIHRVRKDAKRLRYATEVARPAVPGKQVARFAKGLKGMQKALGEHQDSVVARTVLRELGAQAHAGGDNGFTFGLLYGRDQAAATLVEAQLPGLWDTAWKKKARRWLR
>NC_015312.1|WP_013677064.1|5370517_5371540_-|PHP-domain-containing-protein
MSEPRDPVADLRRIAFLLERAHESTYRVRAFRGAASVLRRRSVEELARLAESGELVRLRGVGDVTARCVEESLAGEEPVYLRRLRATEDTPLDEAAMTLREALRGDCHSHTDASDGGSPLAEMVETAIDLGHDYLVITDHSPRLTVANGLSAARLRAQLDQIAELNAGLDGRFRVLTGIEVDILEDGALDQEADLLERLDVVVASVHSKLRMAKPEMTARMLAAVANPLVDVLGHCTGRMVTGRRKRPESEFDAPEVFAACAEHGVAVEINSRPERLDPPKRLLRLAVEAGCEFTIDTDAHAPGQLDWLDNGVTRAVACGVDPARIRNTWTADDLVAARS
>NC_015312.1|WP_013677063.1|5369925_5370492_+|DUF1707-and-DUF2154-domain-containing-protein
MTVAQPPEPTPPESLDPQRRSTQAQLERAVGEGRLTLDEFTDRAALVWKAQNPGDLDAVVADLPPAPVVGSASPARSTLVSVIGDIRRRGRWALRRKTTAVLLIGDVELDLRGAVVTEQGSEPVTVDVWSIIGDTDIVVPEGVEAELVGFTLLGDRRVDLAPVPRVPGTPTVRIRVFSLLGDAKLRSS
>NC_015312.1|WP_013677062.1|5369448_5369880_+|cupin-domain-containing-protein
MSAPALATLLGLAPHPEGGWYRRTWTAPTTTSTPHGPRPSATAILYLLDDVSAWHRVRSTELWCWHSGSPVGLATGGDGPGPGAPVETVLGPPGAAAGTLPQREIPPGVWQTARLLGAEPALVSCVVSPGFDFADFELAPSAS
>NC_015312.1|WP_041762347.1|5368122_5369064_+|carbohydrate-kinase
MVAVAGEALVDIVPAPVDGYHELVPGGSPANTAVGLARLGVPVRMLARLADDPLGRRLRAHLARNGVDLSHVVAAAEPSSMALVEVDEQGVASYDFRVAGTADWQWTAAELAGALDGPVVAVHTGSLATTTPPGAAVLRDLVRRAAARATVSYDPNCRPLLMGDREDVLAGVHELVGLVDVVKVSSEDLEWLLPGMSPADVLDDWVARGAALVAVTLGADGVLAATAGGLRTRLPGRPVHVVDTVGAGDTFSAALLAGLHDAGLLGVDARPALRAIGPDVLHEVLDGAVRAAAITCSRRGADPPTAAELAAAH
>NC_015312.1|WP_013677060.1|5367530_5368097_+|SRPBCC-family-protein
MADVTASATRSISAPAFRIRRMLADYETVRPRILTDHFRDYVLHSGTVGEGTVAGWTLQATSKRVREVVVDVSLPMHDKIVETDRNSTMVTTWKVTPGPPVTCTVTVTSTWQGAGGIGGFFERRFAPKALGEIYDGVLANLERLAAEEPEADAKGAEATGATGSPDTDGAAADAGGESDETVERADQD
>NC_015312.1|WP_013677059.1|5366455_5367460_-|GTP-binding-protein
MRGGRIPVLVLAGFLGAGKTTLLNHLLAHSADVRIGVVVNDFGSIGVDAMLVGGQADGVVPLGNGCLCCAVGEEGVGPLLEKLAGPSSEVDVIVIEASGIAEPGALVQLVLTAGTPRTTFGGLVEVVDAVEFEATRTRHPQIDGHVGLADLVVLNKADRVDPAKLWRVRRLCREVNARAPIVPASHGVVDPGLLYDIHTVPGRQLMLAGGAADGHDGHLHTAYESVEFVSDRPIDPRLLVELLDRRPAGTYRVKGFVDFGVPGHRQRFGLHAVGRYLRFDRTPWPRDVPRRTGLEFIGSGVDADALHTALRACERDEPAGSDDMLAVLRYTFQR
>NC_015312.1|WP_013677058.1|5365293_5366421_-|alpha/beta-hydrolase
MVREWARLRAWRLALRVVFGLPRPLKRLVAGPPVCIDDQQLDLDLQLLNRVGELLSSENEDHLGEAALAEQRRQADFAAEIVAVGAPDDIETRDLVLPGGDGTIAARLYVPPAVPATSGMIVYYHGGGFVLGSLDSTDPLCRLLAAQSQLRLLSVDYRLAPEHPYPAALDDAIAAFDHVATHAADFGADPDLLAVGGDSAGANLALVVAHEQARAGRPVPSFVVALYPATDAERSGGSRELFGSGFGLTAEYLMELERAYLPEGIPDDDARGAILRADDLDVMPPVYLATAGFDPLRDEGEELAERLREAGVPTLARRFSGLVHGYASFTAVSAAARDATLDAASAVRAGLSLAVREGGRDGVPTVVQRITRAVG
>NC_015312.1|WP_041762356.1|5375804_5376725_-|o-succinylbenzoate-synthase
MTTRFRGITVREGMLVEGPAGWGEFCPFPEYDDAEAAAWFAAAHEAAHDGWPEPVRERVPVNCIVPAVGPERAQEMVRASGCATAKVKVADEPGSLAADLERVAAVRDALGPGGAVRVDANARWDVDEAVAAIRALDRAAGGLQYVEQPCPTIEDLAAVRRRVDVRIAADEAIRRADDPLAVDVTAAADVAILKVAPLGGVRRALAVAEACGLPCVVSSALETSVGLAAEIALAAALPQLDFACGLGTVALLRDDVVADPLRPVDGHLPVLRRAPEPVRRTALAADARRTQWWEARLARVSARVTA
>NC_015312.1|WP_013677069.1|5376775_5378257_-|NAD(P)/FAD-dependent-oxidoreductase
MSEGSAVAAGAVATVETVIVGSGFAGLGIAVELDAARRRDFLILEKGDTLGGTWRDNEYPGCACDVESHLYSFSFRQNPEWTRTFARQPEIRAYLEDVADHYRLRDRIRFGAHVTGAEWDGQGWDVRLLDGTTIRARFVVFGTGALHDPAIPDIEGLDRFAGTAFHSARWDHSHDLRGKRVAVIGTGASAIQFVPAIAPDVASLTLFQRTAPWVLPKGDKPIDEAARARYRRFPFLQKLARTGIYWRHEALVAGFLHPRLMGVVGRLGRAYLDRSFAADPELKAKVTPDFTIGCKRILLSNDYYPALRRDNVHVETAGIERVTETGVVTADGVEHPADTIIFGTGFRVADGLSRMTVTGRDGAKLGDAWRGGMEALLGTTVAGFPNMFLLTGPNTGLGHSSMVLMIESQIRYVLDAMDTLDRHHATAIDTVRERQDEYNAAIQAKLEKAVWSQGGCGSWYLDEHGRNRTLWPGTTFTYRRRTRRIDPADHLLL
>NC_015312.1|WP_013677070.1|5378325_5378937_+|TetR/AcrR-family-transcriptional-regulator
METRTPRRRVARAERERQILDAAVSVFSLRGYQNASMDAVAEVVGVTKPVLYSHFGSKEGLLLACVARVRTELLDVTSAAAAAADGPEDMLRRGTLAFFEYLDAQKPSWSLLYSEASVSQAAAAALEEIRAQQTDFIAGMLAAQAPDAAPQRLAGWAHVIVGACERLALWRGSAADGGPRMSPAEATEYLMDLVWTGLAHRPS
>NC_015312.1|WP_013677071.1|5378960_5379707_+|siderophore-interacting-protein
MTTTAPRLLQVRRSARITPRMIRVTLGGDELAGFPGDGPDRRIKMFFPVEGQDRPAVPRASTGGPVWPPGEPRPTIRTYTVRRFDPAAGELDVDFVLHEGHGPAAAWARAAEPGAWVGVSEPGGRWEPDPAARFHLVIGDESALPAVATVLEELAGFAGPVVAFLEVADAGEEQALPPNAEVVWVRRGDAAPGEPLVSAVRAATLPDGDGQAWLAGESGAVRDLRRHLLDDRRLDRRRVYATGYWRAR
>NC_015312.1|WP_173400114.1|5379818_5380529_+|response-regulator-transcription-factor
MQRADGSAVRVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLEVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGMTAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRVWHYDFGGQSNVVELYISYLRKKIDNGRAPMIHTVRGAGYVLKPASGE
>NC_015312.1|WP_013677073.1|5380525_5382046_+|HAMP-domain-containing-histidine-kinase
MTPRAAPRSLRARLVATVLVLLTAAFLVIGLATTIAVRQFMIRQLDDDLRSAGQRFSRFQDQGPPPGPSPDRNDVFLGPAQEPRTLGAHVVAGRVVEALVTDKGGTTLPVATKDYAALEALVPTAQPTSASLSIGTYRLSAFPSPDGGFLVIGLPQARAESVVDGLILIEVIVLGVALAGAGVVGAILVRRELRQLERVAETAETISALRLDRGEVEIVERVPEIDPRTEVGKMGAALNLMLDNVGGALEARQDSEMRLRRFIADASHELRTPLAAIRGYAELTMRSPLSPDAEYSLVRISSQAERMTTLVEDLLLLARLDAGRPLDRAPVDLTRLVLDAVSDAHATGPEHSWRLALPDEPVSTVGDASRLSQVLANLLANARTHTPPGTEVTVGLATDPGDGDAVLTVTDSGPGIPPALLPHIFERFARGERSRSRAAGSTGLGLAIVHAVVAAHNGSVQVDSVPGRTRFTVRLPAGPPADLPPAGPPWPVAIAPPGGQPANSPR
>NC_015312.1|WP_013677074.1|5382021_5383035_-|undecaprenyl-diphosphate-phosphatase
MSTISYLEAVVVGALQGVSELFPVSSLGHSVLVPALVGGHWATDLSVTRPGSPYLAVLVAMHVATALALVVHYRRDWVRIVGGLWESLRRRRITSPIARIGVLLVLGTIPVGIAGLILEAPLRDVLGKPIPAALFLAVNGLVLWLVERGRRAAADDSAAAPTPSDDAAAPQGATVDFSAQPTLPMHAVAPGRAGVATAVSAEDRSDARVSRLGWRDALVVGGAQSLALLPGISRSGITMVAALRRGLRHDDAARFAFLLATPVILAAGLLKMPSLFTAAERPVLGPALVGSLVAGVAAYLSARFLSRWFHTGTLRPFAVYCVVAGLGSLVYLGLFAG
>NC_015312.1|WP_143771027.1|5383082_5384486_-|LCP-family-protein
MSAITLTLTGYAWSAYSRLDGGIATSDVLSGNRTADGATDILLVGIDSRTDSHGNPLPQAELNALTAGPDTGTNDTDTLILVRIPASTSAPVTAISIPRDSYVEIPGYGTHKINSAYARAMASAQSRLSAQGVTGAALAVQEADAGRKELVRTVEQLTGASIDHYAELNLVGFADMTQAVGGVQVCLDAPARDSYSGIDLPAGPQTIAGPQALAFVRQRHGLPRGDLDRIVRQQAFLASLTHQVLSAGTLADPARLTSLIDAVDRYIVLDPGWDLLTFASGLQGRTGGDIQFRTIPTGSVDLRTPSDGDAVQVDPSAVRAFVAGVGAPPPPASSASTGNALADAGATVDVENGTSRSGLGASVAREVASSGLPTGTVGNSAATTHTVVRAGPGATAAAAQVATLLGGVPDVTDDALPTGHVEVVVGQDYRGPTAAAAAQAAAGASASAAPGAPPAPPLTADGVPCVN
>NC_015312.1|WP_013677076.1|5384911_5385871_+|cytochrome-c-oxidase-assembly-protein
MNALAAALPPLTLGRTLTSWRADPGTLLAAVLLLGGYLTARARHAGPAWPRSRTVCFVLGAASIAFVGCSFLGVYADTLFWPRAAQNVVLLMVTPLLLAMGSPVRLVADLLPPGSRARWSRVLHSAPARALTFPLVVTVVLVVPMLVLYLSPLYPLTLRSTVASGLSGTMLVVAGWLYFWTRLRVDPTPRADPYLVTLWITVVEVVGDAVLGLVLWLGPLVGADHYLALHRDWGPDLRLDQVLGAGVLWVGGDVVGLPFIGIVVARMTREDEQRAVEIDAELDAREAAAAAQQDDPEDTAPSRLWWEDDPQLAERFRRR
>NC_015312.1|WP_013677077.1|5386045_5387308_+|bifunctional-glycosyltransferase-family-2/GtrA-family-protein
MSLDTADPAVFPAPVPGPGGHVVLDVVVPVYNEERDLEPSVRRLHAHLRGSFPYPFRITIADNASVDATPRIAAALAEEIPEVAAVRLELKGRGRALRSVWGASDAQVLAYCDVDLSTDLAALLPLVAPLLSGHSDLAIGTRLGRGSRVVRGARREFISRCYNLLLRGTLAAGFSDAQCGFKAIRRDVAARLLPLVEDTGWFFDTELLVLAERAGLRIHEVPVDWVDDPDSRVDIVATAKADLRGIVRVGRALASGRLPVSELRASLGRAPLEVPGVPLGMTGQLARFAAIGVASTLANLLLYVLLRGMMGAIAANILALLLTTFANTAANRRLTFGVRGRAGAGRHQFQGLVVFGLGLGLTTGALALLGSLAPGAGRSTELAVIVLANAVATVLRFVLFRSWIFRARRPAADPVPETSA

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Crispr_ID: NC_015312_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_9

6162310-6162465

Orphan

Consensus_repeat	Method
ACGGTCAAGTTCGCCGACGGCTCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015312_9

>merge|NC_015312|9|6162310-6162465|CRISPRCasFinder
ACGGTGAAGTTCGACGGCGACCCGTCTCTCGCCAACGGCAAGATCGAGCAGACGGTCAAGTTCGCCGACGGCTCGACCGGCACGATCACCTTCGACGGCAACAACGTCCCCGCCAACGGCGAAGTCACCGCCACCGTCAAGTTCGCCGACGGCTCG

>NC_015312|9|8|6162310-6162465|CRISPRCasFinder
ACGGTGAAGTTCGACGGCGACCCG	TCTCTCGCCAACGGCAAGATCGAGCAG
ACGGTCAAGTTCGCCGACGGCTCG	ACCGGCACGATCACCTTCGACGGCAACAACGTCCCCGCCAACGGCGAAGTCACCGCC
ACCGTCAAGTTCGCCGACGGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_041760132.1\|6169333_6169633_+\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NC_015312.1\|WP_013677832.1\|6169647_6169965_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_041760128.1\|6155803_6156262_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677816.1\|6154092_6155016_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677830.1\|6165705_6166113_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677827.1\|6163242_6163659_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677823.1\|6157417_6157723_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677820.1\|6156331_6156517_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677834.1\|6170059_6170224_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677831.1\|6166160_6168647_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NC_015312.1\|WP_013677822.1\|6157016_6157391_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_041760129.1\|6157823_6158234_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677818.1\|6155339_6155786_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NC_015312.1\|WP_013677835.1\|6170287_6170572_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677829.1\|6165358_6165703_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_143770665.1\|6168698_6169337_+\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NC_015312.1\|WP_013677825.1\|6158239_6158635_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677828.1\|6163662_6165327_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677821.1\|6156520_6157015_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013677817.1\|6155015_6155330_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_041760132.1\|6169333_6169633_+\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	0.00161615
NC_015312.1\|WP_143770665.1\|6168698_6169337_+\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	8.88564e-07
NC_015312.1\|WP_013677818.1\|6155339_6155786_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	1.09476e-06
NC_015312.1\|WP_013677831.1\|6166160_6168647_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	0.000336888

>NC_015312.1|WP_013677825.1|6158239_6158635_+|hypothetical-protein
MKWQIPYGDRTWEFDDYRITASEARLQKRITAGLTPTAADTAREEMDPDAWVAALAIARRRAGLPLDEAIAIDDERFELGDILDTTTSVLQARAAEVAAKDTDKADTDDAEPRAVDEAAEVSEGPEASAAV
>NC_015312.1|WP_041760129.1|6157823_6158234_+|hypothetical-protein
MNAELRAAAKPVRRAVQAAVLGASFPDAEPAAGGGGESRGLRAGLARATEIHDLSNGVRFAVDGNKVGIERGHRLAQLTDTETAPRWRHPVRGRRDRKWRTQIGRPWFFVTIRGGRPKFEAGVERGMAKTARRIEG
>NC_015312.1|WP_013677823.1|6157417_6157723_+|hypothetical-protein
MAYCGPRGIPWTEFLSWDKWSRDAAILWARQQAETCTCGTRLEEWDPKAGGHPAAYVATVRSCPGCAALERRDERLRAEIEKGEKPRGSRAVLRVQRPFRP
>NC_015312.1|WP_013677822.1|6157016_6157391_+|hypothetical-protein
MGRRERLRARQLPTESVRLPDPGGGPDEVFELRAIPPDEWEKLLGEHPPTEEQAEKGETYNPTTFRPALLERCVLTPDGEEPLTAQDWADLSASRNLAPGEFIRLYNTAYALNDRSPLVVVGKG
>NC_015312.1|WP_013677821.1|6156520_6157015_+|hypothetical-protein
MTAEPINVGEKYSALDGLTYVYVPTIAAGTLIPTRTEIDDGVDLSTEVIEWEGFEITSDGIELKGLKRFKGEIPGMMSAAESSLTLYADRGNDDVSSILPRDTAGFILRMPVGDVPTKKMSVWPIRVKSLTPVFSTEAATAYKVAMSITAEPNESVTIPAAATP
>NC_015312.1|WP_013677820.1|6156331_6156517_+|hypothetical-protein
MASRIKNIEPATPPPDGWVVLKKGESTQTVHPDAVTYWVDKRKWERVVDAPATAPATDKEG
>NC_015312.1|WP_041760128.1|6155803_6156262_+|hypothetical-protein
MAIGALHTIVRAAATEAQTEDDRIRVDLGNPGKFSERRAIGVGLSAVDAGPIDDRDIRKTLGYDVHAFDIACIALAWSGDENDKLGWMTKAYDLVDVVRAALEDPANRGLGIPAVVQSARIAGSSFSWRTDGQAAKAVVEFPVRINALRLRR
>NC_015312.1|WP_013677818.1|6155339_6155786_+|phage-gp6-like-head-tail-connector-protein
MYATEVLSLEAAKAYLNEDLESTVNDDELTEFIEAAVARVDKHLGLDQIPGAGLAYAAEVTPLQRLAVKTVLRVYWDTQRTSVTDRNGYTAQPWEDDNGPAGTASIRSKLTDLLGQAAAEPSGSGAAPQGAFPPPSCWPDPADRRRGW
>NC_015312.1|WP_013677817.1|6155015_6155330_+|hypothetical-protein
MSEVYEVVGPLAVIKSSDGKLHYYYSGSQVPDGYPEPELERLAGLGLIAAVDVPTPPADDAPKRPANSASKAAWVAYAVELGMDPDEAAELNRDQLAERFPVEA
>NC_015312.1|WP_013677816.1|6154092_6155016_+|hypothetical-protein
MPYTYPPAAPTVSGDVTSIHRLLKEPTLIERRLRTIAEQRFIADALLTGRFTAEGGAIQYEQGESLYTDRTPEAIRPGMNYPMAGLGIGPTQIAEVQKWGQDVPVTDESIKRLKRNPVDRAFLKLVNQMVKQVDGISIAAIVSAVTQTAAAAAVWSSATAKQIFLDVAKAKAAVIDLNEGFEPDTVVVSTTAWTYAMATFADAGYLPREDRSAPVFTGQFPVIEGMRWLATPSTPVANAALLVDSTQLGGMADEQLGGPGYAGSVAGIETKSIRDEDNDGYKLRARRVTVPVVLEPNAGYVITGVTS
>NC_015312.1|WP_013677827.1|6163242_6163659_+|hypothetical-protein
MGYKHAELMAQADTRLGSGTPATWYLGMSLTVSNADGSGFTEPGSGVNYGRVAISNNTTNWPAAVLIANRVLKRNGAKFTFANPTGSWGLLVEWGLFLALTGGLPRITNPLNQPISPKSGNTPVEFDINALELPFGGS
>NC_015312.1|WP_013677828.1|6163662_6165327_+|hypothetical-protein
MPDVRQRAGNAVATGQSGTVKVVLDAPTQPGNTVVVIAAGTRDGWLPWPMVLNASGFSSAVDRVEDELAVVVWYQANAPAMSQVSVSTLTGRAFQVQVLELTGLAQSAVLDKVAVGGDNDDYKAGSSTPRSGSTGNTSQADEFVLGIVANRYSSGQSGFTGGLVRLSDTVTPDRSSEDDYKRCRLTVHAQVTNQVGSWSIGAQLPTKRDWIAAVLTFKGGTIGPARMTSVDQAPVLTTSGGSGDLTVFGPLVSTGQPDVFAATGGTGRMGPFELQLRLGGWDGFTIGEGADVRVNRVEGLSGWEMRVSDGDLSRGDGSSRGIDLQSPRQVVIEMNFDDVDHAALEDVTQQLLRALRPQKTEDWDLLFRLPGMPLRILRCRPIKVGNDITAEQLLRRDLTAALRAADPRIYSARERSIPVPVTPAGQTVVDVASVPNIGNAPAWPLIRITNNDVVPVTRVQVVNPSSGSAFEVATVIPPGSQLTGDMLAYVTQSSGNVVSLDEQPKYGAWVPPREPLSIAPDPYAPNGVNAVWCRTTPEGADVLVALEYRDTWSG
>NC_015312.1|WP_013677829.1|6165358_6165703_+|hypothetical-protein
MSDTSPPLYDPEIHTVEDGDPFVRVELWCLCGLAHRQLDPVSAVVPQIASFRRRHDGPGHGPTDPETALAEREARREAGHRALGIQGAYEPRERDTSDLPTEGHDWAADTAGGE
>NC_015312.1|WP_013677830.1|6165705_6166113_+|hypothetical-protein
MANALYNKGREKFLRGEISWNTDTIKAVLVDAADYTVSLTTHEFLSDIPTGGRVATTAALTSKTTTDGVADAADPTFAGASGDQSEYIVLYKDTGSAATSPLIGLIDTATGLPVLPNTGDIAVVFDNGANKIFKL
>NC_015312.1|WP_013677831.1|6166160_6168647_+|hypothetical-protein
MPPSVRSVSTASHDTGTVTVTKPSGTVAGDRLVAICTRDEGAGTGAWGSNLFTLVNASTISGVGRIQVWQRTAGSSEPASYTYTDSSGNSTGTVHLFALQDVDPTAVVVAAFNNGAAATSVVAPSIPSANYTGVDPLLLCGFYGLINTGARTWTAPSGMTGRGTITPPFQYTSAFAASLGLSGTPATGTRTATMSSPGKPWIACSVVIPSTAAPPQELDPSSIPSAEAWGTPTITPGAASVATTSIASAEAFGTPTVAPGAVPVGASGIPTSEAWGTPALQQTITLAGIGSAEAWGTPTVNVGPTVAPTGIPSAEAWGSPAVIPGVVSVGAAGVESAEAWGTPTVLPLIKPEGIPSAEAWGAPALLPGAVAVYPSGIPSAEAWGAPIVVPGPISAAATGVPSAEAWGTPTLRLHVVPGGIPSAEAWGAPTVLVGSVTIFPSGIPSAEAWGIPALTVTIDPTVMRGILTERTGPRYELVCVARLPASAGPPTFEEVERVPLRTLSWSSALSSAQTLSATCSISSLPEPVLQRLRKPDELATEFWLNRDGRRVFAGPFMTLRPVGGEYVAIDALGIYAYLQYMFLTFDMPFAQVDQHFIAKALVDHWQEHPTIRHGHFGIDTSAVTPSGVLRDRTYVAMEGHQVSRRVQELGAVEGGFDSEIDPTTRRLELWTPQKGVDRSTGSDAIVLDRRNIADPGLAMSAAPGDLASVAIGTSSAAGADTALWSIAINQQLAAAYGAAGVMSSWQDISEQGTLDGHVNAMLAARAGALVAPGPRTRVTADADISAYDVGDTVAFDDFVLGISGAWRIRKRTVDVAESGEETASLEFV
>NC_015312.1|WP_143770665.1|6168698_6169337_+|tail-fiber-protein
MAQKNAADLEDFKQTILARLALRPTGDIEETLRPSAKPGTLLLNGQTVNRADYPALWQWVQDQSLVGSGKPFGTGDGSTTFVLPNYAGKIARGVASGETVGQLTGADSLTLSAAHLPSHKHNVGVTMTSGHAHAIFGSANHGGHGNGGVVLVPEGSFYGVVTGPVQSLGAHDHGESVEGQNKPYIVAETAVGSGSPIDLRQSAFAVNWLIYT
>NC_015312.1|WP_041760132.1|6169333_6169633_+|tail-fiber-protein
MSRGDVIRQLAALRERVLDGPPTGTIEPNRSHRAPGMEVLDGRAVLRAMHPELWRWAVDNDLVRPGLFGAGDGTTTFVLPDFRGRLTSGGTPINWLIHT
>NC_015312.1|WP_013677832.1|6169647_6169965_+|hypothetical-protein
MAIEVTDEMRQAVYEADCEAKGHMFVFDRMFQSTDGHTSVVSGPDPDTLPHVRCQRCPKVWLLIDDPGNDYADAVAKLRGRGAPVGLVRPRRFKGQLRRPEALEA
>NC_015312.1|WP_013677834.1|6170059_6170224_+|hypothetical-protein
MSPGRAIATGAVWALFVLVVVIVVAVAHGSPLVGPDRPYTAPTAAVPTPPEDGR
>NC_015312.1|WP_013677835.1|6170287_6170572_+|hypothetical-protein
MDGLLTSIVGAAPQLGVTGLLLAVVVLLVRREVQTSELHGIEMERQARIHDEEIAERDEEIAALRTRCDRLQERLDDEMERRRAAQDTGRHRLD

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Crispr_ID: NC_015312_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015312_10

6892999-6893108

Orphan

Consensus_repeat	Method
AGCGTCGGACCGGGCGGAGCGAGGTACGGCGTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015312_10

>merge|NC_015312|10|6892999-6893108|CRISPRCasFinder
AGCGTCGGACCGGGCGGAGCGAGGTACGGCGTGAGCGAGCGTGCGAGCGAACCGTCGACACAGCAGCAGTGCGAAGCGTCGGACCGAGCGGAGCGAGGTACGGCGTGAGC

>NC_015312|10|9|6892999-6893108|CRISPRCasFinder
AGCGTCGGACCGGGCGGAGCGAGGTACGGCGTGAGC	GAGCGTGCGAGCGAACCGTCGACACAGCAGCAGTGCGA
AGCGTCGGACCGAGCGGAGCGAGGTACGGCGTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015312.1\|WP_013678473.1\|6882854_6885614_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_015312.1\|WP_013678484.1\|6895009_6896290_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NC_015312.1\|WP_013678486.1\|6897145_6897448_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NC_015312.1\|WP_013678489.1\|6899533_6900217_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_015312.1\|WP_041760191.1\|6888233_6889478_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_015312.1\|WP_013678475.1\|6886601_6887429_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239518
NC_015312.1\|WP_173400123.1\|6896472_6897069_+\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013678481.1\|6891592_6892246_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_015312.1\|WP_013678493.1\|6902633_6903047_-\|DUF3151-domain-containing-protein	unknown	unknown	gnl\|CDD\|378646
NC_015312.1\|WP_013678482.1\|6892242_6892941_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_015312.1\|WP_013678478.1\|6889516_6890191_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_015312.1\|WP_013678491.1\|6900921_6901773_+\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|376611
NC_015312.1\|WP_013678488.1\|6897821_6899534_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237304
NC_015312.1\|WP_173400072.1\|6890742_6891567_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_015312.1\|WP_041760192.1\|6890335_6890590_-\|hypothetical-protein	unknown	unknown	unknown
NC_015312.1\|WP_013678490.1\|6900206_6900920_+\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_015312.1\|WP_013678476.1\|6887425_6888223_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NC_015312.1\|WP_013678487.1\|6897447_6897825_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|376370
NC_015312.1\|WP_013678474.1\|6885639_6886530_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_015312.1\|WP_013678492.1\|6901736_6902411_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251

Protein	Function_ID	Function_description	E-value
NC_015312.1\|WP_013678473.1\|6882854_6885614_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.31014e-11
NC_015312.1\|WP_013678484.1\|6895009_6896290_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NC_015312.1\|WP_013678486.1\|6897145_6897448_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	1.92052e-61
NC_015312.1\|WP_013678489.1\|6899533_6900217_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	6.97334e-26
NC_015312.1\|WP_041760191.1\|6888233_6889478_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.93382e-12
NC_015312.1\|WP_013678475.1\|6886601_6887429_+\|NUDIX-hydrolase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	0.00226112
NC_015312.1\|WP_013678481.1\|6891592_6892246_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.83388e-27
NC_015312.1\|WP_013678493.1\|6902633_6903047_-\|DUF3151-domain-containing-protein	gnl\|CDD\|378646	pfam11349, DUF3151, Protein of unknown function (DUF3151). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.85451e-72
NC_015312.1\|WP_013678482.1\|6892242_6892941_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.28523e-52
NC_015312.1\|WP_013678478.1\|6889516_6890191_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.2104e-52
NC_015312.1\|WP_013678491.1\|6900921_6901773_+\|urease-accessory-protein-UreD	gnl\|CDD\|376611	pfam01774, UreD, UreD urease accessory protein. UreD is a urease accessory protein. Urease pfam00449 hydrolyzes urea into ammonia and carbamic acid. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex and is required for urease nickel metallocenter assembly. See also UreF pfam01730, UreG pfam01495.	1.08931e-24
NC_015312.1\|WP_013678488.1\|6897821_6899534_+\|urease-subunit-alpha	gnl\|CDD\|237304	PRK13206, ureC, urease subunit alpha; Reviewed.	0
NC_015312.1\|WP_173400072.1\|6890742_6891567_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	4.72725e-101
NC_015312.1\|WP_013678490.1\|6900206_6900920_+\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.96514e-106
NC_015312.1\|WP_013678476.1\|6887425_6888223_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.9278e-71
NC_015312.1\|WP_013678487.1\|6897447_6897825_+\|urease-subunit-beta	gnl\|CDD\|376370	pfam00699, Urease_beta, Urease beta subunit. This subunit is known as alpha in Heliobacter.	1.23617e-58
NC_015312.1\|WP_013678474.1\|6885639_6886530_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.32273e-28
NC_015312.1\|WP_013678492.1\|6901736_6902411_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.04268e-51

>NC_015312.1|WP_013678482.1|6892242_6892941_+|CoA-pyrophosphatase
MSEELFPGQAPDWLAPLVERTRDFDPAQIAARRVPPVEGGRRAAVLVLFGEGPDGPDVLLAERSARLRNHAGQVAFPGGGIDPGDSGPVGAALREAEEETGLAASGVVPLSTLSDLFVPPSGFVVTPVLAHWARPVAVRAVDPGETARVARVPLAQLADPANRISVRHPSGGTGPAFLVPGLFVWGFTGGLLSALLHAGGWERPWTPSRTLSLAEALDARGDGSTGREVAGG
>NC_015312.1|WP_013678481.1|6891592_6892246_+|TlpA-family-protein-disulfide-reductase
MNRAALRGRRAEIVTTVVVVVLVALGVVALWPGGSSDGSAGGSGATGTAATSDADVAALQARAALPPCPAPSGAPAAGPLAGVSVPCLGTGGTVDLGAALAGRRALLNVWASWCAPCRAELPALAEYAARPGAVPVIGIDVRDQPGPALTLLADLGIKLPSVADPDGTLAAALSLPPAVPVSYLVDADGTVTPILPPVPFTSADDVAAAVARHGAKP
>NC_015312.1|WP_173400072.1|6890742_6891567_+|endonuclease-III
MSTPARTLPDRRSAARLAARVAAGESSIGRARRVGRILRALAAAYPDAHCELDFTTPLELAVATVLSAQTTDVRVNEVTPALFARYRTALDYAQADRTELEELIRPTGFYRNKTSSLIGLGQAVVDRFDGELPARLEDLVTLPGIGRKTANVVLGNAFGVPGITVDTHFGRLVRRWGWTDEEDPVKVEHAVGALVPKRDWTIVSHQVIFHGRRVCHARKPACGVCTLAVDCPAFGAGPTDPEKAAPLVKGPERDHLLALAGLGPTVPASPDASA
>NC_015312.1|WP_041760192.1|6890335_6890590_-|hypothetical-protein
MTAWLSVLVPLLVMFFALGMERVESRLRDATMPQDELDEMLERPRPEEVRAMFRQGTARALELFRLRNRRPGKRKPASESKIAS
>NC_015312.1|WP_013678478.1|6889516_6890191_-|Crp/Fnr-family-transcriptional-regulator
MDEVLIRAGIFQGVEPHAAEVLAQALESAEFPRGHVIFSEGEPGDRLYIIGSGKVKIGRKSPDGRENLLMVAGPSDMFGELSIFDPGPRTSSATAVTEVRAYTMDRGALREWIGKRPEIAEQLLRVLARRLRRTNNMLADLIFTDVPGRVAKSLLQLARQFGSQESGLLRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWLRLEGKSVLILEPERLARRAR
>NC_015312.1|WP_041760191.1|6888233_6889478_-|MFS-transporter
MNVGGVSVSLSDYRAAVRTPGAAVPVLGSALGRLPIAMYGLAVLLHVQRTTGSFASAGLVSAGILVGMSVGAVAQGRIMDRRGPARVLLVVAALFAGASALLLVLVATGRPLGALVAAAVLAGATMPALPGASRSLWTALLPPGPRRDAGYGYEAISLEVFFILGPAVAAFLVAAPWPGTGALVAASAMVVGTVVFACSRAVRAVRGVPRRTGRSVLGALASPGMRTVALASLGFGVVVGTVEVGVPAVTSAAGSAALGGVLLSAWSVTSVLGGLGYAARPWPRPLHLRLPVLLVGFAVAVAAMTLAAATGSVVATALVMLVAGALITPQTTAHSVAIDVVVAEGAGTEAFGWVVTAATVGIAAGQSGAGVVVEAIGPHAAFLVGGVGGLVVAAVLWLRRASVESAATPEAVPA
>NC_015312.1|WP_013678476.1|6887425_6888223_+|MBL-fold-metallo-hydrolase
MSAHPSYGELRPVTALASVLLAHNPSPMTLEGTNTWVLRAPGEERCVVVDPGEHDEEHLARVAAQGPVELVILTHHHHDHAGGARRFAELTGAPVRALDPSLVLGSEALAHGDVVAAAGVELRILSTPGHTADSISLVLDGPGDPGPAVLTGDTILGRGTTVIAEPDGSLGPYLDSLRLLRELPDGTDVLPGHGPELADAPAAARAYLAHREERLDQVRRALDTLGPDATPRQVVEIVYADVDPVLWKAADSSVKAQLEYLRAAR
>NC_015312.1|WP_013678475.1|6886601_6887429_+|NUDIX-hydrolase
MSAGAERPAEPVVARPASTVLLLRDGPDGRLQVFLQRRVTGMAFGGGMTVFPGGGVDRTDLDDPAPWSGPAPRWWADRLGTEPTVAAGFVRAAVRETFEESGVLLASRPDGTPVDQGVLGEARADVVARTRTFGDVLAEAGLVLRADLLRLWARWITPVVQPRRYDTVFFTALVPDGQEADAHTTEAVEASWWSPSDALAAHRDKEIGLMRPTLAILTDIARHPDAASLHAAGPDGPIRPILPMVVGPGPRVLLPGDPGYDPDVAAGVVRTGGAR
>NC_015312.1|WP_013678474.1|6885639_6886530_-|Gfo/Idh/MocA-family-oxidoreductase
MQRLRMGLVGAGPWASTVHAAAIAAHPVAELAGVWARRSEAAAAVADGTGARVHATFDELVADVDAVAFAVPPAVQGELAPRAVAAGRHVVLEKPLAADLAAAEGLERAVADAGVVSTVVLTLRYDAAVRAWIAALPTGPAGPDTVGVGRWFSGALLGGPFAASAWRVTHGALLDVGPHVIDLLDLALGRVQGVDWAHRYDDGLWAFGLAHQGGARSSVSMSLRVATDPTEFEVAMFGGAGRYLLTSRPEDATVPYSTLLDEFVADVAAGRTDGPCSAARGLHLQRITEQVSALAG
>NC_015312.1|WP_013678473.1|6882854_6885614_+|hypothetical-protein
MAELSTTALTTHELLLALAGRVDDDLLAICRELIAVGHDAPAFELLTAALVAAHTQVPPRVRETLVAAAARLRIDLDADRRLPVAAPENGTPHRFAADSDAPGLGARVAEALAAHRPGGGHSWLTWRTTPAGAAPGPVPHPVLLVEIPGTPGPEDHAADVLAYRLSATLQRIGLSVGVEVFVAGSALPAYHAEALSTARPVPSPAPAAPITDQPPMPPATGRLASVPVVSGASRPMRPLRPVTESAALPTVQQPSTPPPSTPPPNPTNVPPPGNPPSDPAIRFRPPAASGPPPVLPTTVDPAALARPTSAPTGPIETSGARPAVELPTTTFPATEPAPAPRRRRAAEPPDGPPAPAPTNGVGRHGGGDPSATGPRPTGRAAHARPTPEAPTPNGVPSAAAAGSETVGPAPAEAATERPTPPEGTQNSGFAPPAAAAPRHQERPEWIGFAPDGPPAGARPLDPRGRVAPAETGANGHPVQGETSASPRRPPNGAPVPAATDGGVDPLAGPSQLVTGPEEVAPDGPGRTPPGRPEDAPAAEDEPHSRSETDAHDDPALPPGPPDPALAPPRTGPYYGAPARTSPDSGPGGADARTTDRTGDDPLGGNGGSGDEGSWDEGSRPDRVLRVVRPAPVGDGAAAPFVGIPARGNDEDRDRPQERPEDGTAPDDGDPPLLAEMNDPLLGPLRQPLLDPLLEPTGSFRAITGERADVAGPDDTTGDTTGDTARTTRAGAPTPPSGFVASPTAGTGLPRRSSHAAQFARPFATDGETAAVSGDDLFAESAPRPATAAPHDERPVDLDPADPLGVGGIVPTTEGPDGGATHASTDAPAAAATETPFVEPAPRPAPRPARRRAHVSPPAAETSTAPDEEQDDGVVDPMSTLTATERDLLRLLQVELAAREGTGAPSENGAGKADPPDLAG
>NC_015312.1|WP_013678484.1|6895009_6896290_-|adenylosuccinate-synthase
MPAIVLIGAQWGDEGKGKATDILGGQVQWVVRYQGGNNAGHTVVLPDGQDFALHLIPSGILTPGVRNVIGNGVVVDPGVLLEELSGLEGRGVDTGGLMISADAHLIMPYHIAIDKVTERFLGKAKIGTTGRGIGPAYQDKVARVGVRAADVLDEKILRQKVEAALELKNQILVKVYNRRALDVDEVVDTVLGCGERFSHRIADTRLLLNKALEAGETILLEGSQGTLLDVDHGTYPFVTSSNPTAAGAAVGSGIGPNKIDRVIGILKAYTTRVGSGPFPTELHDEWGERLRKVGGEVGVTTGRPRRCGWFDAVIGRYAVRVNGITDYFLTKLDVLSGLETVPICVAYEVDGKRVDDMPMTQTDVHHALPIYEELPGWFEDISACRTFDELPANARAYVRRIEELTGAPVSAIGVGPGRDETITRDV
>NC_015312.1|WP_173400123.1|6896472_6897069_+|hypothetical-protein
MPAALAAVPAVRLPSRPGRTDLDPVLDEQRPGRVVVSGTDAVLAAVLVRLLRRELLGAVEVAFVPTTRRSAAAAAWGLPRDRAAAAALALDGTASPVPLIRDDAGGVLVGRGEVRNLRGEAYCDNTLVVRGSVRRLLAAPGPQGVSSLAGRGVRAATGRALQIGCVGARVVVNGVEHPREVPRWTWYRHTEDWLLVRP
>NC_015312.1|WP_013678486.1|6897145_6897448_+|urease-subunit-gamma
MHLSPQERDKLLVHVAADVARTRRARGLRMNHPEAIALITDHVLEGARDGRTVSELMASGREVLSRADVLDGVGEMIDSVQVEATFPDGTKLVTVHSPIV
>NC_015312.1|WP_013678487.1|6897447_6897825_+|urease-subunit-beta
MAGGGAAAGGWAPGQVIPGDEPVELNPGRERTTLVVTNTGDRPVQVGSHFHFAAVNPGLAFDRAAAWGTRLDVPAGTSVRFEPGVEKEVVLVPLAGARRVSGLRAEYAGALDERTAEPTERNYGA
>NC_015312.1|WP_013678488.1|6897821_6899534_+|urease-subunit-alpha
MTAIDRARYADLFGPTTGDRIRLADTNLLIEVTEDRSRGPASGDEVIFGGGKVIRESMGQSTVTSAEGAPDLVITGAVVLDHWGVVKADVGITDGRITGIGKAGNPDTMDGVDFPIGPSTEIIAGNGKILTAGGIDVHVHFITPGLVDTALAAGLTTLGGGGTGPAEGTKATTVTPGPRNLARMFQALDHLPVNVLLMGKGNTTSTDALWEQLRAGAGGFKLHEDWGTTPAAIDACLRVADASGVQVAIHTDTLNEAGFLESTVEAIAGRSINAFHTEGAGGGHAPDIIEVVGTGNILPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPSVPEDLAFAESRIRPTTIAAEDVLHDIGAISMMSSDSQAMGRIGEVVIRTWQTAHVMKAARGALPGDGQADNLRARRYVAKYTINPAIAHGMGEEIGSVEVGKLADLVLWDPKFFGIRPDLVLKGGFIAWAAMGDANASIPTPQPVLARPMFGAAPAVAAATSLNFVAPAALEARSLESLGLAKPAAPVADTRSVTKAHMLLNDATPSVKVDPDSFEVRIDGDVVEPAPVSELPMAQRYFLF
>NC_015312.1|WP_013678489.1|6899533_6900217_+|urease-accessory-protein-UreF
MPSLATLVLSDARFPGGGHVHSGGLEEAVARALVTGVGDLGTFLHGRLRTAGLVAASFAAAAAVAAGSAEPCWAALDAELDARTPSAAQRDASRAQGRGTLRAARASWPSPVLDALVAAHPRPHHPLLVGAVVGIAGGDPVEAAQCVAYLAVSGPASAAVRLLGLDPIAVNAAIVAMAPTVDEVVALAVAAADRAPADLPAPGAPMLDLLAQSHVRHHREQVRLFAS
>NC_015312.1|WP_013678490.1|6900206_6900920_+|urease-accessory-protein-UreG
MRPEDHVGHGHGHLVTFDPTETEPDHHDTPPTHGRAVRIGIGGPVGSGKTALVAALARSLADRVRLAVVTNDIYTTEDADFLRRNAVLPPDRVEAVQTGCCPHTAIRDDITANLDAVETLEERFGDLDLVLVESGGDNLTAVFSRGLVDRQIFVVDVAGGDKVPRKGGPGVTTADLLVINKIDLAALVGADLGVMTSDAHRMRGELPVIAQSLVHDPGATDVGEWVLAQVGAVRAAA
>NC_015312.1|WP_013678491.1|6900921_6901773_+|urease-accessory-protein-UreD
MRARAVLAVERDTGGRCVVRELRSESPLSLVPRRGVAGALDTGVTVHLVGSATTPLAGDDVELDVRVGPGAALVLTGVAAAVALPGAGRASTLTVRVELDDGACLQYLPEPTVVTSRADHRTLLHATLHPTARLRAREVLVGGRSGEPSGRYAGTTRVVERARPAPGTTSDRVLLHQTQELGDAGLAASSAYLGGRRVLATEVLVWGDDSADGAVGDDWSLTSLRGRGSLATAVGHDAVGAQRALAEAVAAHPGWTSTVLAGAERARPAPPPHAAADESGRRW
>NC_015312.1|WP_013678492.1|6901736_6902411_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MQFLVRWVIRPLALLLWRPRVEGADGVPTTGPVIFASNHRAAVDTAVIPLVTPRPVAFLAKAEYFTGRSLKSRVGARFLSALGYVPVDRGNAKAGLAALDAGRTVLEAGGAFGIYPEGTRSLDGRLHRGHTGVATLALTTGAVVVPVGLVGTEKVQPVGAKVPRIKPVTVRFGTPLDFSRYEGLENSPAIRRAVTDEVMDAIAQLTGQEYVDSYHRRPDSSAAA
>NC_015312.1|WP_013678493.1|6902633_6903047_-|DUF3151-domain-containing-protein
MSLHGNLLGPEPTRLPVDPAAAELRGGTDAKAVAAAHPASMIAWATLAEDALASGEPVTAYAYARTGYHRGLDQLRRNGWKGFGPIPWSHEPNRGFLRALAALLRAAEAIGETDEVERCRTFLADSDPAAPGELGLS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NC_004808	Streptomyces rochei plasmid pSLA2-L DNA, complete sequence	16251-16275	3	0.88
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	181236-181260	3	0.88
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	38249-38273	3	0.88
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP022192	Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence	100356-100380	3	0.88
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	JN106175	Uncultured bacterium plasmid pAKD34, complete sequence	77536-77560	3	0.88
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	462849-462873	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	184970-184994	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	269980-270004	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	432154-432178	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	CP000617	Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence	278337-278361	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	178488-178512	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2480233-2480257	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	310067-310091	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	729701-729725	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	15382-15406	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NC_015178	Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence	25008-25032	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	98839-98863	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	393709-393733	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MH590601	Streptomyces phage Haizum, complete genome	18728-18752	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MF766046	Streptomyces phage Diane, complete genome	19089-19113	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MF766048	Streptomyces phage Tefunt, complete genome	18731-18755	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MF766044	Streptomyces phage Amethyst, complete genome	18706-18730	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MT498036	Gordonia Phage Zitch, complete genome	48598-48622	4	0.84
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MK392364	Streptomyces phage Nishikigoi, complete genome	18728-18752	4	0.84
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	62814-62840	4	0.852
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP020568	Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence	60743-60769	4	0.852
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	158654-158680	4	0.852
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	426191-426217	4	0.852
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	112266-112292	4	0.852
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NZ_CP036456	Streptomonospora sp. M2 plasmid phiM2, complete sequence	28559-28586	5	0.821
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	MH576962	Streptomyces phage Satis, complete genome	7487-7514	5	0.821
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	MK620894	Streptomyces phage Kradal, complete genome	7491-7518	5	0.821
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1299040-1299064	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1504545-1504569	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	465-489	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	303139-303163	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	222942-222966	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	335927-335951	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	314749-314773	5	0.8
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	145072-145096	5	0.8
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	253867-253893	5	0.815
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	240552-240578	5	0.815
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	253056-253082	5	0.815
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NC_014035	Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence	111627-111653	5	0.815
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP041744	Paraburkholderia megapolitana strain LMG 23650 plasmid unnamed1, complete sequence	110586-110612	5	0.815
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	MT664984	Xanthomonas phage Xp12, complete genome	14833-14859	5	0.815
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	51651-51678	6	0.786
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	273201-273228	6	0.786
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	656989-657016	6	0.786
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	98355-98382	6	0.786
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NZ_CP046101	Rhodococcus sp. AQ5-07 plasmid unnamed2, complete sequence	129875-129902	6	0.786
NC_015312_1	1.1\|842935\|28\|NC_015312\|CRISPRCasFinder	842935-842962	28	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	122019-122046	6	0.786
NC_015312_1	1.2\|842986\|25\|NC_015312\|CRISPRCasFinder	842986-843010	25	MN234176	Mycobacterium phage Yuna, complete genome	19037-19061	6	0.76
NC_015312_2	2.1\|3653506\|28\|NC_015312\|CRISPRCasFinder	3653506-3653533	28	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	45742-45769	6	0.786
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	291200-291226	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP033038	Agrobacterium fabrum strain 12D13 plasmid pAt12D13c, complete sequence	41520-41546	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	482347-482373	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	495337-495363	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	759336-759362	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	482627-482653	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	523426-523452	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	421789-421815	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	495337-495363	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	MT310888	Microbacterium phage Phogo, complete genome	3001-3027	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	MK308638	Microbacterium phage ArMaWen, complete genome	3001-3027	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NC_048778	Microbacterium phage Alex44, complete genome	3001-3027	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	MT657334	Microbacterium phage Stormbreaker, complete genome	3001-3027	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	MT310887	Microbacterium phage Unphazed, complete genome	3001-3027	6	0.778
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	279825-279851	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	214502-214528	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	408286-408312	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	717690-717716	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	645393-645419	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	210049-210075	7	0.741
NC_015312_9	9.1\|6162334\|27\|NC_015312\|CRISPRCasFinder	6162334-6162360	27	NZ_CP013605	Rhizobium sp. N731 plasmid pRspN731d, complete sequence	210043-210069	7	0.741
NC_015312_5	5.1\|4501474\|32\|NC_015312\|PILER-CR	4501474-4501505	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	794334-794365	8	0.75
NC_015312_5	5.1\|4501474\|32\|NC_015312\|PILER-CR	4501474-4501505	32	NZ_CP009963	Collimonas arenae strain Cal35 plasmid unnamed, complete sequence	6471-6502	8	0.75
NC_015312_5	5.1\|4501474\|32\|NC_015312\|PILER-CR	4501474-4501505	32	NC_022063	Mycobacterium phage Phelemich, complete genome	29759-29790	9	0.719
NC_015312_5	5.1\|4501474\|32\|NC_015312\|PILER-CR	4501474-4501505	32	KF024727	Mycobacterium phage Reprobate, complete genome	29764-29795	9	0.719
NC_015312_5	5.1\|4501474\|32\|NC_015312\|PILER-CR	4501474-4501505	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2321592-2321623	11	0.656

1. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 3, identity: 0.88

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
ccgtcgcgccgggcgtcgtcgagcc	Protospacer
..**** ******************

2. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 3, identity: 0.88

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tggtcgagcccggcgtcgtcgagcg	Protospacer
* ******** *************

3. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 3, identity: 0.88

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtctcgagccgggcggcgtcgagcc	Protospacer
 * ************ *********

4. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tggtcgagcccggcatcgtcgagcc	Protospacer
* ******** ***.**********

5. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to JN106175 (Uncultured bacterium plasmid pAKD34, complete sequence) position: , mismatch: 3, identity: 0.88

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tggtcgagcagggcggcgtcgagcc	Protospacer
* ******* ***** *********

6. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgagccggtcgtcgtcgagta	Protospacer
 *********** **********.

7. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cggacgagccgggcgtcgtcgtgcc	Protospacer
. * ***************** ***

8. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgagccgggcgtcatcgaagc	Protospacer
 ****************.****. *

9. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
atggcgagccgggcgtcgtcgacca	Protospacer
 ** ****************** *

10. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to CP000617 (Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tcgtcgacccgggcgtcgtcgagag	Protospacer
*.***** ***************

11. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
acgtcgagcagggcgtcgacgagcc	Protospacer
 .******* ******** ******

12. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gggtcgagccggccgttgtcgagcc	Protospacer
  ********** ***.********

13. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgagcccggcgtcgtcgaccg	Protospacer
 ********* *********** *

14. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
ctgtcgacccgggcgtcgccgagca	Protospacer
.****** **********.*****

15. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP021214 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgagccgggcatcgtcgtgcg	Protospacer
 *************.****** **

16. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NC_015178 (Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgaggcgggcgtcgtcgaagc	Protospacer
 ******* *************. *

17. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tcttcgagccgcgcgtcgtcgagcg	Protospacer
*. ******** ************

18. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gtgtcgagccgggcgtcatcgaagc	Protospacer
 ****************.****. *

19. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MH590601 (Streptomyces phage Haizum, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gggtcgagccgatcgtcgtcgagcc	Protospacer
  *********. ************

20. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MF766046 (Streptomyces phage Diane, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gggtcgagccgatcgtcgtcgagcc	Protospacer
  *********. ************

21. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MF766048 (Streptomyces phage Tefunt, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gagtcgagccgatcgtcgtcgagcc	Protospacer
  *********. ************

22. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MF766044 (Streptomyces phage Amethyst, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gcgtcgagccgatcgtcgtcgagcc	Protospacer
 .*********. ************

23. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MT498036 (Gordonia Phage Zitch, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cggtcgagcgcggcgtcgtcgagcc	Protospacer
. *******  **************

24. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MK392364 (Streptomyces phage Nishikigoi, complete genome) position: , mismatch: 4, identity: 0.84

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gagtcgagccgatcgtcgtcgagcc	Protospacer
  *********. ************

25. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 4, identity: 0.852

tctctcgccaacggcaagatcgagcag	CRISPR spacer
gctctcgccaacggcatgatcgagaac	Protospacer
 *************** ******* *

26. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

tctctcgccaacggcaagatcgagcag	CRISPR spacer
ccgctcgccaacggcacgatcgaccag	Protospacer
.* ************* ****** ***

27. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 4, identity: 0.852

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cccctcgtcgacggcaagatcgagcag	Protospacer
.*.****.*.*****************

28. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.852

tctctcgccaacggcaagatcgagcag	CRISPR spacer
gccctcggcatcggcaagatcgagcag	Protospacer
 *.**** ** ****************

29. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 4, identity: 0.852

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tcgttcaccaacggcaagatcgggcag	Protospacer
** .**.***************.****

30. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NZ_CP036456 (Streptomonospora sp. M2 plasmid phiM2, complete sequence) position: , mismatch: 5, identity: 0.821

acaccggacccgtcggcgcggcaggctc--	CRISPR spacer
acaccggacccttcggcgcgg--atctcgg	Protospacer
*********** *********  . ***

31. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 5, identity: 0.821

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
agacctgacccggcggcgcggcaggggc	Protospacer
* *** ****** ************  *

32. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 5, identity: 0.821

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
agacctgacccggcggcgcggcaggggc	Protospacer
* *** ****** ************  *

33. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
gcatcgagccgggcggcgtcgagca	Protospacer
 ..************ ********

34. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
ggatcgagccgggcctcgtcgagcg	Protospacer
  .*********** *********

35. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
tgttcgagccgggcgtcgtcgacgg	Protospacer
*  *******************

36. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cggtcgagccgggcggcgtcgagaa	Protospacer
. ************* *******

37. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cgcgcgagctgggcgtcgtcgagcc	Protospacer
.   *****.***************

38. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
ttgtcgagccggtcgtcgtcgccga	Protospacer
************ ********

39. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cggtcgagccgggcggcgtcgagat	Protospacer
. ************* ******* .

40. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.8

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
atgtcgagccgggcgtcggcgatga	Protospacer
 ***************** ***

41. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgccaacggcaagatcgagata	Protospacer
* .*********************  .

42. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgccaacggcaagatcgagata	Protospacer
* .*********************  .

43. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgccaacggcaagatcgagata	Protospacer
* .*********************  .

44. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NC_014035 (Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
ttcatcgccaatggcaagatcgagctg	Protospacer
*.. *******.************* *

45. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP041744 (Paraburkholderia megapolitana strain LMG 23650 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
catctcgccgacggcacgatcgagccg	Protospacer
. *******.****** ******** *

46. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to MT664984 (Xanthomonas phage Xp12, complete genome) position: , mismatch: 5, identity: 0.815

tctctcgccaacggcaagatcgagcag	CRISPR spacer
ttcgtctccaacggcaagatcgagaag	Protospacer
*.. ** ***************** **

47. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
gcaccggacccgtccgggcggcaggtca	Protospacer
.************* * ********..

48. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
tggccgagcccgtcggcgcggcaggccc	Protospacer
  .***..******************.*

49. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
aagcaggacccgtcggcccggcaggcgg	Protospacer
* .* ************ ********

50. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
ccgccggacccggcggcgcgacaggccg	Protospacer
 *.********* *******.*****.

51. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NZ_CP046101 (Rhodococcus sp. AQ5-07 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
actccggactcgtcggcgcggcatcgtt	Protospacer
** ******.*************   *.

52. spacer 1.1|842935|28|NC_015312|CRISPRCasFinder matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.786

acaccggacccgtcggcgcggcaggctc	CRISPR spacer
tggccgagcccgtcggcgcggcaggccc	Protospacer
  .***..******************.*

53. spacer 1.2|842986|25|NC_015312|CRISPRCasFinder matches to MN234176 (Mycobacterium phage Yuna, complete genome) position: , mismatch: 6, identity: 0.76

ttgtcgagccgggcgtcgtcgagcc	CRISPR spacer
cgcccgagccgggcgtcgtcgagga	Protospacer
.  .*******************

54. spacer 2.1|3653506|28|NC_015312|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 6, identity: 0.786

agtcggacaccgggcgcagtcggacacc	CRISPR spacer
gggaggacaccggccgcagtcagacacg	Protospacer
.*  ********* *******.*****

55. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatcgcgccaacggcaagatcgagttc	Protospacer
  ** *******************.

56. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP033038 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13c, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
gtcaacgccaacggcaaggtcgagcag	Protospacer
 ..  *************.********

57. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

58. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

59. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
gtgctgaacaacggcaagatcgagcag	Protospacer
 . ** . *******************

60. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

61. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

62. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

63. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
tgcctcgcccacggcaagatcgagata	Protospacer
* .****** **************  .

64. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to MT310888 (Microbacterium phage Phogo, complete genome) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatctcgccaaggacaagatcgagctt	Protospacer
  ********* *.***********

65. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to MK308638 (Microbacterium phage ArMaWen, complete genome) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatctcgccaaggacaagatcgagctt	Protospacer
  ********* *.***********

66. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NC_048778 (Microbacterium phage Alex44, complete genome) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatctcgccaaggacaagatcgagctt	Protospacer
  ********* *.***********

67. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to MT657334 (Microbacterium phage Stormbreaker, complete genome) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatctcgccaaggacaagatcgagctt	Protospacer
  ********* *.***********

68. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to MT310887 (Microbacterium phage Unphazed, complete genome) position: , mismatch: 6, identity: 0.778

tctctcgccaacggcaagatcgagcag	CRISPR spacer
aatctcgccaaggacaagatcgagctt	Protospacer
  ********* *.***********

69. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

70. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

71. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

72. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

73. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgccgacggcaagatcgagata	Protospacer
. .******.**************  .

74. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013515 (Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

75. spacer 9.1|6162334|27|NC_015312|CRISPRCasFinder matches to NZ_CP013605 (Rhizobium sp. N731 plasmid pRspN731d, complete sequence) position: , mismatch: 7, identity: 0.741

tctctcgccaacggcaagatcgagcag	CRISPR spacer
cgcctcgcccacggcaagatcgagata	Protospacer
. .****** **************  .

76. spacer 5.1|4501474|32|NC_015312|PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.75

attgcgagcgagcgcgaccggcccggatgcgg	CRISPR spacer
ggcgcgagcgagcgcgaccggcgcggccacga	Protospacer
. .******************* *** ..**.

77. spacer 5.1|4501474|32|NC_015312|PILER-CR matches to NZ_CP009963 (Collimonas arenae strain Cal35 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

attgcgagcgagcgcgaccggcccggatgcgg	CRISPR spacer
cgcggcatcgagcgcaaccggcacggatgcgg	Protospacer
  .*  * *******.****** *********

78. spacer 5.1|4501474|32|NC_015312|PILER-CR matches to NC_022063 (Mycobacterium phage Phelemich, complete genome) position: , mismatch: 9, identity: 0.719

attgcgagcgagcgcgaccggcccggatgcgg	CRISPR spacer
gaggccgacgggcgcgaccggcccggctgcgc	Protospacer
.  ** ..**.*************** ****

79. spacer 5.1|4501474|32|NC_015312|PILER-CR matches to KF024727 (Mycobacterium phage Reprobate, complete genome) position: , mismatch: 9, identity: 0.719

attgcgagcgagcgcgaccggcccggatgcgg	CRISPR spacer
gaggccgacgggcgcgaccggcccggctgcgc	Protospacer
.  ** ..**.*************** ****

80. spacer 5.1|4501474|32|NC_015312|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

attgcgagcgagcgcgaccggcccggatgcgg	CRISPR spacer
gccttgagcgagcgcgaccggccatgattatc	Protospacer
... .******************  ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12527 : 73442

Staphylococcus_phage(30.0%)

transposase,integrase

attL 7792:7812|attR 82618:82638

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7792:7812	attL	NA	NA	NA	NA
WP_063821878.1\|12527_13814_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	6.3e-13	29.3
WP_013672238.1\|14976_15759_+	hypothetical protein	NA	NA	NA	NA
WP_013672240.1\|16047_16314_+	hypothetical protein	NA	NA	NA	NA
WP_013672241.1\|16334_17228_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_158511275.1\|17324_17561_+	hypothetical protein	NA	NA	NA	NA
WP_013672242.1\|17716_19462_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_049803572.1\|19512_20271_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.1e-28	35.6
WP_173400073.1\|20288_21545_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	7.7e-24	29.4
WP_158511276.1\|22457_22604_-	hypothetical protein	NA	NA	NA	NA
WP_013672246.1\|22894_23455_-	cysteine hydrolase	NA	NA	NA	NA
WP_013672247.1\|23457_24651_-	hypothetical protein	NA	NA	NA	NA
WP_083845041.1\|24732_25083_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041760217.1\|25302_25554_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049803265.1\|25550_25784_+	hypothetical protein	NA	NA	NA	NA
WP_158511277.1\|25780_26491_+	WhiB family transcriptional regulator	NA	NA	NA	NA
WP_013672251.1\|26617_27409_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.4e-28	32.1
WP_013672252.1\|27405_28992_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_143770721.1\|29116_29545_+	hypothetical protein	NA	NA	NA	NA
WP_013672254.1\|29541_29904_+	hypothetical protein	NA	NA	NA	NA
WP_013672255.1\|29900_31760_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013672256.1\|31851_32511_+	hypothetical protein	NA	NA	NA	NA
WP_013672257.1\|32507_32909_+	DUF2742 domain-containing protein	NA	NA	NA	NA
WP_013672258.1\|32905_33823_+	hypothetical protein	NA	NA	NA	NA
WP_013672259.1\|34055_38453_+	relaxase domain-containing protein	V5UQN3	Mycobacterium_phage	2.4e-19	25.0
WP_013672260.1\|38991_40461_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.3e-48	31.7
WP_041759128.1\|40457_41255_-	hypothetical protein	NA	NA	NA	NA
WP_013672262.1\|41441_41780_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013672263.1\|41884_43894_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.9e-33	28.5
WP_143770300.1\|44366_45707_+	CBS domain-containing protein	NA	NA	NA	NA
WP_013672265.1\|45777_47082_+	divalent metal cation transporter	NA	NA	NA	NA
WP_013672266.1\|47851_48400_-	hypothetical protein	NA	NA	NA	NA
WP_013672267.1\|49080_50421_+	DUF1727 domain-containing protein	NA	NA	NA	NA
WP_083845383.1\|50456_51206_+	hypothetical protein	NA	NA	NA	NA
WP_041759132.1\|51368_51734_-	hypothetical protein	NA	NA	NA	NA
WP_013672270.1\|52456_52735_+	hypothetical protein	NA	NA	NA	NA
WP_083845042.1\|52685_53549_-	rod shape-determining protein	NA	NA	NA	NA
WP_086002792.1\|53681_54872_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_143770725.1\|55088_56279_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_173400073.1\|56480_57737_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	7.7e-24	29.4
WP_143770727.1\|57936_59388_-	LCP family protein	NA	NA	NA	NA
WP_013672274.1\|59564_59984_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_083845043.1\|59996_60254_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_013672275.1\|60330_61167_-	ZIP family metal transporter	NA	NA	NA	NA
WP_143770729.1\|61787_65753_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	4.0e-26	24.3
WP_173400075.1\|66342_67650_+	putative lipid II flippase FtsW	NA	NA	NA	NA
WP_013672278.1\|67659_68691_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_143770731.1\|70694_71753_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.2e-31	32.5
WP_013672282.1\|72239_73442_+\|transposase	IS110 family transposase	NA	NA	NA	NA
82618:82638	attR	NA	NA	NA	NA

DBSCAN-SWA_2

6141275 : 6174520

Gordonia_phage(42.86%)

transposase,tail,head,integrase,protease

attL 6153354:6153370|attR 6177422:6177438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143770660.1\|6141275_6141548_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_013677800.1\|6141646_6141925_+	hypothetical protein	NA	NA	NA	NA
WP_013677802.1\|6142147_6142933_+	hypothetical protein	NA	NA	NA	NA
WP_158511345.1\|6143058_6143229_+	hypothetical protein	NA	NA	NA	NA
WP_013677804.1\|6143192_6145211_+	DUF3631 domain-containing protein	A0A127AW94	Bacillus_phage	1.9e-08	21.8
WP_013677805.1\|6145207_6145465_+	hypothetical protein	NA	NA	NA	NA
WP_013677806.1\|6145566_6145971_+	hypothetical protein	NA	NA	NA	NA
WP_013677807.1\|6145967_6146162_+	hypothetical protein	NA	NA	NA	NA
WP_041760124.1\|6146418_6146703_+	hypothetical protein	NA	NA	NA	NA
WP_013677808.1\|6146835_6147840_+	hypothetical protein	NA	NA	NA	NA
WP_013677809.1\|6147839_6148406_+	hypothetical protein	NA	NA	NA	NA
WP_013677810.1\|6148405_6148720_+	hypothetical protein	A0A142KA59	Gordonia_phage	1.3e-09	40.8
WP_049803788.1\|6149285_6149621_+	hypothetical protein	A0A2D1GPT4	Mycobacterium_phage	4.7e-05	38.4
WP_143770662.1\|6149571_6151134_+	hypothetical protein	M1PFG2	Streptococcus_phage	2.4e-22	24.3
WP_013677813.1\|6151153_6152407_+	hypothetical protein	A0A142K8P5	Gordonia_phage	3.2e-139	63.7
WP_013677814.1\|6152403_6153705_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A2K9VH82	Gordonia_phage	7.9e-80	44.0
6153354:6153370	attL	NA	NA	NA	NA
WP_013677815.1\|6153708_6154080_+	DUF2190 family protein	A0A142K8P7	Gordonia_phage	1.2e-22	50.8
WP_013677816.1\|6154092_6155016_+	hypothetical protein	A0A1C9EHT7	Gordonia_phage	8.9e-94	55.7
WP_013677817.1\|6155015_6155330_+	hypothetical protein	A0A1J0MC79	Streptomyces_phage	9.0e-06	61.4
WP_013677818.1\|6155339_6155786_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_041760128.1\|6155803_6156262_+	hypothetical protein	NA	NA	NA	NA
WP_013677820.1\|6156331_6156517_+	hypothetical protein	NA	NA	NA	NA
WP_013677821.1\|6156520_6157015_+	hypothetical protein	NA	NA	NA	NA
WP_013677822.1\|6157016_6157391_+	hypothetical protein	NA	NA	NA	NA
WP_013677823.1\|6157417_6157723_+	hypothetical protein	NA	NA	NA	NA
WP_041760129.1\|6157823_6158234_+	hypothetical protein	NA	NA	NA	NA
WP_013677825.1\|6158239_6158635_+	hypothetical protein	NA	NA	NA	NA
WP_013677826.1\|6158754_6163197_+	hypothetical protein	I4AZE0	Saccharomonospora_phage	3.4e-26	29.3
WP_013677827.1\|6163242_6163659_+	hypothetical protein	NA	NA	NA	NA
WP_013677828.1\|6163662_6165327_+	hypothetical protein	NA	NA	NA	NA
WP_013677829.1\|6165358_6165703_+	hypothetical protein	NA	NA	NA	NA
WP_013677830.1\|6165705_6166113_+	hypothetical protein	G1BNF9	Mycobacterium_phage	3.7e-44	68.1
WP_013677831.1\|6166160_6168647_+	hypothetical protein	A0A2H5BLE2	Streptomyces_phage	2.5e-10	28.5
WP_143770665.1\|6168698_6169337_+\|tail	tail fiber protein	A0A068Q5X6	Ralstonia_phage	3.3e-07	38.5
WP_041760132.1\|6169333_6169633_+\|tail	tail fiber protein	NA	NA	NA	NA
WP_013677832.1\|6169647_6169965_+	hypothetical protein	NA	NA	NA	NA
WP_013677834.1\|6170059_6170224_+	hypothetical protein	NA	NA	NA	NA
WP_013677835.1\|6170287_6170572_+	hypothetical protein	NA	NA	NA	NA
WP_041760133.1\|6170598_6171255_+	hypothetical protein	NA	NA	NA	NA
WP_013677837.1\|6171251_6171518_+	hypothetical protein	NA	NA	NA	NA
WP_013677838.1\|6171504_6172299_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_013677839.1\|6172301_6172556_+	hypothetical protein	NA	NA	NA	NA
WP_013677840.1\|6172634_6172934_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_013677842.1\|6173164_6173362_-	hypothetical protein	NA	NA	NA	NA
WP_143771075.1\|6173486_6173729_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013677844.1\|6173734_6174520_-\|integrase	site-specific integrase	A0A1C9EI13	Gordonia_phage	8.5e-21	32.3
6177422:6177438	attR	NA	NA	NA	NA

DBSCAN-SWA_3

6398930 : 6437201

Enterobacteria_phage(25.0%)

transposase,integrase

attL 6411115:6411132|attR 6444580:6444597

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013678050.1\|6398930_6400163_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_158511347.1\|6400408_6400549_+	hypothetical protein	NA	NA	NA	NA
WP_013672251.1\|6400642_6401434_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.4e-28	32.1
WP_013676029.1\|6404133_6404451_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_173400107.1\|6404447_6405518_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_143770731.1\|6406112_6407171_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.2e-31	32.5
WP_049803540.1\|6407233_6407497_+	hypothetical protein	NA	NA	NA	NA
WP_013672518.1\|6407912_6409157_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.0e-106	53.2
WP_013678051.1\|6409831_6411250_-	amidase	NA	NA	NA	NA
6411115:6411132	attL	NA	NA	NA	NA
WP_013678052.1\|6411489_6412344_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_013678053.1\|6412370_6412853_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_143770675.1\|6412849_6413842_-	cytidyltransferase	NA	NA	NA	NA
WP_013678056.1\|6413864_6415163_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013678057.1\|6415175_6416240_-	Zn-dependent alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	2.3e-08	24.0
WP_013678058.1\|6416254_6417277_-	toluene hydroxylase	NA	NA	NA	NA
WP_013678059.1\|6417279_6417582_-	MmoB/DmpM family protein	NA	NA	NA	NA
WP_013678060.1\|6417578_6417977_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_013678061.1\|6417987_6418233_-	Toluene-4-monooxygenase system B	NA	NA	NA	NA
WP_013678062.1\|6418268_6419786_-	YHS domain-containing protein	NA	NA	NA	NA
WP_013678063.1\|6419936_6420224_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_013678064.1\|6420229_6421351_-	chloromuconate cycloisomerase	NA	NA	NA	NA
WP_013678065.1\|6421394_6422249_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_013678066.1\|6422277_6423873_-	Pyoverdin chromophore biosynthetic protein pvcC	NA	NA	NA	NA
WP_013678067.1\|6423914_6424487_-	flavin reductase family protein	NA	NA	NA	NA
WP_013678068.1\|6424596_6425415_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143770679.1\|6425513_6425777_-	hypothetical protein	NA	NA	NA	NA
WP_013678069.1\|6425773_6426274_-	transcriptional regulator	NA	NA	NA	NA
WP_041760152.1\|6427189_6427681_+	hypothetical protein	NA	NA	NA	NA
WP_086002828.1\|6427953_6428970_+	MinD/ParA family protein	NA	NA	NA	NA
WP_013678072.1\|6428971_6430096_+	heparin lyase I family protein	NA	NA	NA	NA
WP_013678073.1\|6430097_6431351_+	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_143770681.1\|6431611_6433270_+	hypothetical protein	NA	NA	NA	NA
WP_013678075.1\|6433770_6434721_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013678076.1\|6434717_6437201_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
6444580:6444597	attR	NA	NA	NA	NA

DBSCAN-SWA_4

6712952 : 6746561

Staphylococcus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143770793.1\|6712952_6714113_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.8e-28	34.4
WP_013678329.1\|6714368_6715568_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_041762980.1\|6715753_6716422_+	DNA alkylation repair protein	NA	NA	NA	NA
WP_013678331.1\|6716720_6717158_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_041760175.1\|6717567_6717789_+	hypothetical protein	NA	NA	NA	NA
WP_013678333.1\|6717972_6718620_-	response regulator transcription factor	NA	NA	NA	NA
WP_013678334.1\|6718607_6719492_-	sensor histidine kinase	NA	NA	NA	NA
WP_041760176.1\|6719628_6720468_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_143771128.1\|6720515_6721094_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	2.1e-21	34.7
WP_086002792.1\|6721264_6722455_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_013673969.1\|6722705_6723749_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_049803555.1\|6724208_6724436_+	hypothetical protein	NA	NA	NA	NA
WP_013678337.1\|6724594_6725413_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_013678338.1\|6725419_6725758_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_013678339.1\|6725801_6726860_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013678340.1\|6727072_6727600_+	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_013678341.1\|6727734_6728706_+	hydrogenase	NA	NA	NA	NA
WP_013678342.1\|6728775_6730383_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_173400122.1\|6730388_6731219_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_143770694.1\|6731224_6731545_+	hypothetical protein	NA	NA	NA	NA
WP_013678345.1\|6731555_6732815_+	hypothetical protein	NA	NA	NA	NA
WP_013678346.1\|6732818_6733172_+	hypothetical protein	NA	NA	NA	NA
WP_013678347.1\|6733182_6734103_+	NifU family protein	NA	NA	NA	NA
WP_143770696.1\|6734018_6735302_+	hypothetical protein	NA	NA	NA	NA
WP_013678349.1\|6735298_6737638_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_013678350.1\|6737639_6737900_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_013678351.1\|6737896_6738622_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_013678352.1\|6738621_6739296_+	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	4.2e-08	28.7
WP_013678353.1\|6739292_6740402_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_013678354.1\|6740413_6740686_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_013678355.1\|6740723_6741854_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_013678356.1\|6741850_6742597_+	hypothetical protein	NA	NA	NA	NA
WP_143770698.1\|6742614_6743460_+	hypothetical protein	NA	NA	NA	NA
WP_013678359.1\|6744364_6745225_-	6-chlorohydroxyquinol-1,2-dioxygenase	NA	NA	NA	NA
WP_013678360.1\|6745237_6745537_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_041760176.1\|6745721_6746561_+\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015312

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection