CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014920	Haemophilus influenzae F3031, complete genome	1 crisprs	DEDDh,cas3,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014920_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014920_1

1545185-1545276

Orphan

Consensus_repeat	Method
AAATATCTTACGATTGTTTGTTGGTGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014920_1

>merge|NC_014920|1|1545185-1545276|CRISPRCasFinder
AAATATCTTACGATTGTTTGTTGGTGGGCTTTAGCCCACCCTACAACTACTGAAGCCCACCAAAATATCTCACGATTGTTTGTTGGTGGGCT

>NC_014920|1|1|1545185-1545276|CRISPRCasFinder
AAATATCTTACGATTGTTTGTTGGTGGGCT	TTAGCCCACCCTACAACTACTGAAGCCCACCA
AAATATCTCACGATTGTTTGTTGGTGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014920.1\|WP_005692776.1\|1539361_1539820_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
NC_014920.1\|WP_041174972.1\|1548708_1550625_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NC_014920.1\|WP_013526325.1\|1542431_1543364_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NC_014920.1\|WP_013526334.1\|1555902_1557918_+\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|130146
NC_014920.1\|WP_005651072.1\|1541417_1542422_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|167263
NC_014920.1\|WP_005694574.1\|1537244_1537898_-\|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl\|CDD\|225612
NC_014920.1\|WP_013526330.1\|1553110_1553875_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_014920.1\|WP_013526323.1\|1530527_1530947_-\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|225764
NC_014920.1\|WP_005692782.1\|1540202_1541021_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182878
NC_014920.1\|WP_005650845.1\|1550634_1551171_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|223625
NC_014920.1\|WP_013526332.1\|1555217_1555688_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_014920.1\|WP_013526322.1\|1529177_1530464_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NC_014920.1\|WP_013526327.1\|1551186_1551738_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|182603
NC_014920.1\|WP_005692779.1\|1539816_1540203_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184564
NC_014920.1\|WP_013526331.1\|1553937_1555221_+\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NC_014920.1\|WP_013526328.1\|1551741_1552560_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|161904
NC_014920.1\|WP_013526329.1\|1552556_1553114_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_014920.1\|WP_005665578.1\|1543468_1544998_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NC_014920.1\|WP_005654959.1\|1538217_1539282_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NC_014920.1\|WP_013526333.1\|1555684_1555897_+\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|227932

Protein	Function_ID	Function_description	E-value
NC_014920.1\|WP_005692776.1\|1539361_1539820_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	1.65201e-54
NC_014920.1\|WP_041174972.1\|1548708_1550625_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NC_014920.1\|WP_013526325.1\|1542431_1543364_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NC_014920.1\|WP_013526334.1\|1555902_1557918_+\|DNA-helicase-Rep	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_014920.1\|WP_005651072.1\|1541417_1542422_+\|ornithine-carbamoyltransferase	gnl\|CDD\|167263	PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional.	0
NC_014920.1\|WP_005694574.1\|1537244_1537898_-\|TfoX/Sxy-family-DNA-transformation-protein	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	3.28707e-30
NC_014920.1\|WP_013526330.1\|1553110_1553875_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.79966e-92
NC_014920.1\|WP_013526323.1\|1530527_1530947_-\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|225764	COG3223, COG3223, Predicted membrane protein [Function unknown].	1.17511e-43
NC_014920.1\|WP_005692782.1\|1540202_1541021_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182878	PRK10976, PRK10976, putative hydrolase; Provisional.	1.98786e-91
NC_014920.1\|WP_005650845.1\|1550634_1551171_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	2.75088e-31
NC_014920.1\|WP_013526332.1\|1555217_1555688_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.70626e-85
NC_014920.1\|WP_013526322.1\|1529177_1530464_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	7.26598e-176
NC_014920.1\|WP_013526327.1\|1551186_1551738_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	4.69334e-86
NC_014920.1\|WP_005692779.1\|1539816_1540203_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184564	PRK14196, PRK14196, fluoride efflux transporter CrcB.	7.76272e-35
NC_014920.1\|WP_013526331.1\|1553937_1555221_+\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NC_014920.1\|WP_013526328.1\|1551741_1552560_+\|shikimate-dehydrogenase	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	5.00931e-135
NC_014920.1\|WP_013526329.1\|1552556_1553114_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	1.12064e-117
NC_014920.1\|WP_005665578.1\|1543468_1544998_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NC_014920.1\|WP_005654959.1\|1538217_1539282_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NC_014920.1\|WP_013526333.1\|1555684_1555897_+\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|227932	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only].	2.21175e-25

>NC_014920.1|WP_005665578.1|1543468_1544998_+|YfcC-family-protein
MDASKKKKTFNFPSAFTILFAILILAVGLTWVIPSGSYSKLTYNSTDNVFVVKAYGVDDKTYPATTDTLDNLNIKIKLSNFTEGVIKKPIAIPGTYQRVEQHHKGIEDITKSMVEGTIEAVDVMVFIFVLGGMIGVINRTGSFNAGLMALVKKTKGNEFFIVFCVSVLMVLGGTTCGIEEEAVAFYPILVPVFLALGYDAIVCVGAIFLAASMGTAFSTINPFSVVIASNAAGIQFTEGIGFRALGLVLGATCVIAYLYWYCKKIKADPSFSYTYDDREEFRQRYMKNFDPNTTIPFSARRKLILTLFCISFPIMIWGVMIGGWWFPQMAASFLAITIIIMFISGLSEKDVVESFTEGASELVGVSLIIGLARGVNLVLEQGMISDTILDYMSNVVSGMPGSVFILGQLVVFIFLGLIVPSSSGLAVLSMPIMAPLADSVGIPRDIVVSAYNWGQYAMLFLAPTGLVLVTLQMLHIPFDRWVKFVMPMIGCLLLIGSILLVVQVSLYSV
>NC_014920.1|WP_013526325.1|1542431_1543364_+|carbamate-kinase
MRIVIALGGNALLRRGEPMTAENQRQNVRIACEQIDKIWPNNELVIAHGNGPQVGLLALQGAAYTDVPTYPLDVLGAETAGMIGYMIQQELGNLVPFEVPFATLLSQVEVDINDPAFKNPTKPIGPVYTKEEAERLAKEKNWSIAQDGDKYRRVVPSPLPKRIFEIRPVKWLLEKGSIVICAGGGGIPTYYDEHHNLQGVEAVIDKDLCSALLAENLDADLFIIATDVSATFVDWGKPNQKAISVASPEAISELGFASGSMGPKVQAAINFAKQTGKDAVIGSLSDIVDIVKGKAGTRITKKAEGISYYA
>NC_014920.1|WP_005651072.1|1541417_1542422_+|ornithine-carbamoyltransferase
MAFNMKNRHLLSLVHHTEREIKYLLDLSRDLKRAKYAGTEQQKLKGKNIALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDGIEYRGFKQSIVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIEHCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICGPKALLPEANLVEMCEKFAKESGARITVTEDIDKAVKGVDFIHTDVWVSMGEPLETWGERIKLLLPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPELANGIEVTEEVFESPMNIAFEQAENRMHTIKAVMVASLA
>NC_014920.1|WP_005692782.1|1540202_1541021_-|Cof-type-HAD-IIB-family-hydrolase
MNLPFRAMVSDLDGTLLTPEHLVGDLTIDTLRALEQKGVDIILATGRNHTDVSSILGKIGAERAVMITSNGARVRDLQGNLLYSNSLPEELVLELYKTPFDTSKVCMNSYQDEGWFTNKDIPAMRQFHKESGFDYNVVDFSKHHGRGTEKVFFIGKTPEDLVEVETYLRDKFGDVTTIVYSALACLEVMNKNVSKGDALKHLLESREYELKDCIAFGDGMNDVEMLSWAGKGCIMKDADIRLKMACPELEVIGSNKEESVARYLRTLFGLDY
>NC_014920.1|WP_005692779.1|1539816_1540203_-|fluoride-efflux-transporter-CrcB
MQALLFISCGAILGASLRWAIGLLFNPLFSSFAFGTLIANLLGCLIIGVLLGLFWQFPQISSEWRLFLITGFLGSLTTFSSFSSEVVELFFNDKWLNGFCVLMMHLFGCLAMTVLGIWIYKICSQLLS
>NC_014920.1|WP_005692776.1|1539361_1539820_+|recombination-regulator-RecX
MSSLAFNYIVNLLSHREYSEFELRNKMQEKNFSEEEIDDALSRCQAKNWQSDRRFSENYLNSRAQKGYGVGRIRQELRQLKGVSSDIIDEVLMESEIDWYEMAENLLRKKFPNYNEQQTPKMKQKIWQYMLSHGFRSDEFADLIGQNQSEWD
>NC_014920.1|WP_005654959.1|1538217_1539282_+|recombinase-RecA
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDELEARLRAELVANPEQALMADIEQSENNTESESDFE
>NC_014920.1|WP_005694574.1|1537244_1537898_-|TfoX/Sxy-family-DNA-transformation-protein
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVLSQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVELKKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE
>NC_014920.1|WP_013526323.1|1530527_1530947_-|phosphate-starvation-inducible-protein-PsiE
MEESPELEKLPRIITDVLKIVLCTALIVLAIVLIIALVKITYTLPMMVLNTSSVVPYDVAEQAVMFFLYFGFIGLIVQYFKSGYHFPLRYFIYAGITAMLRLIIVNHESSVDTILFAGAILIMVIALCLVLYSNKLKNI
>NC_014920.1|WP_013526322.1|1529177_1530464_+|heme-biosynthesis-protein-HemY
MFRVLFLMLTLLVGLVAGPYISGQQGYVRIETANRIIEMSITTLVIFFIISLAIIYAFEWGIARFFRLSRSSYQWFSNRKRVKAQKQTLEGLVKMDEGDYAKAEKLIGKNAKHSAEPVLNLIKAAEAAQQRGDEFSANRYLIEATELAGSDNLLVEIARTRILLQQNKLPAARSSVDSLLEMARRNKEVLKLAVEIYLRSKAYQALDKILDNVANSGLFNDEEFKDLRSKTENGLLDEKMNEEGIDGLLTWWNQQPRHRRNNIELKISLIQRLIDCNDHESATELTFEILKKLGDNTAISLPLCTQITRLQPEDNSKLLKLIEKRAKRVDEKQKCCINRALGYLYVRNNEFIKAADVFKNVIACPEQLEQNDLMMASYVFEQAGDKALAEQVRQESLKSVMAIQDVIPESAEEKTEENSTALLESKSE
>NC_014920.1|WP_041174972.1|1548708_1550625_+|ABC-transporter-ATP-binding-protein
MIIFSNLSLKRGQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVNYPANWRVSWVNQETPALDISAIDYVIQGDREYCRLQQELNEANERNDGHAIAHIHGQLETLDAWTIQSRAASLLHGLGFSQEETIQPVKAFSGGWRMRLNLAQALLCPSDLLLLDEPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFEVQRATKLAQQTAMYRQQQQKISHLQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYVDNPFTFEFRPPQSLPNPLVMIEQASAGYGSGESAVEILSKIKLNLVPSSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAKGVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHDKKVEEFKGDLEDYQKWLSEQNSTSENKVSEKVGDNENSVQNRKEQKRREAELRQQTAPLRKKITQLEEKMNKFSSELANIENQLADAELYNAENKEKLTALLAQQVDVKKALDDVETEWMIAQEELEEMLQA
>NC_014920.1|WP_005650845.1|1550634_1551171_+|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCSNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLIPRRGRQGKIFYGCDNFPKCKFSLPAKPYAVPCPTCHFPLSLLKSENGEKQIFQCANKTCRHIFEQ
>NC_014920.1|WP_013526327.1|1551186_1551738_+|Sua5/YciO/YrdC/YwlC-family-protein
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELSGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLDEMVGRAHNPSEIRDLRTNQLFRQG
>NC_014920.1|WP_013526328.1|1551741_1552560_+|shikimate-dehydrogenase
MDLYAVWGNPIVQSKSPLIQSQLAAQTHQTIEYIAKLGDLDAFEQQLLAFFDQGAKGCNITSPFKERAYQLADEYSQRAKLAEACNTLKKLDDGKLYADNTDGIGLVTDLERLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKAKELAERFQPYGNIQAVSMDSIPLQTYDVVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVIPDFVAVYEQLKKAML
>NC_014920.1|WP_013526329.1|1552556_1553114_+|DNA-3-methyladenine-glycosylase-I
MIIRCPWVGEQPIYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAFHQFDPKKIAKMTALDIDACMQNAGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFVNYKPIVNDVPDLRSVPAKTEASKALSKALKKRGFVFVGETTCYAFMQSMGLVDDHLNDCPCKTR
>NC_014920.1|WP_013526330.1|1553110_1553875_-|glycosyltransferase-family-2-protein
MPTISVAMIVKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEISLSYGAKFYENSNWQGFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIHHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFMKMYLLKAGFLDGKQGFLLAVLSAHSTFVKYADLWERDQHKH
>NC_014920.1|WP_013526331.1|1553937_1555221_+|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase
MWRFFYTSLLLICQPLILCFIGLLSVKSPRYRQRLAERYGFYGNAPCPPPQGIFIHAASVGEVIAATPLVRQLQQDYPHLSITFTTFTPTGSERVKATFGDSVFHYYLPLDLPFSIHRFINFVQPKLCIVMETELWPNLIHQLFLRNIPFVIANARLSARSAHRYGKIKARLQTMWSQISLIAAQDNISGKRYATLGYPKEKLNITGNIKYDLNTNDELLRKIDSLRTLWKQDRPIWIAASTHNGEDEIILKSHRALLAKYPNLLLLLVPRHPERFNVVADLLKKEKFQFIRRSTNELPNENTQVILGDSMGELMLMYGVSDIAFVGGSLVKHGGHNPLEPLAFKMPVITGKHTFNFPEIFRMLVEVQGVLEVNSTADALERAVEALLNSKEARERLGNAGYEVLMENRGALQRLLDLLKPYLERNV
>NC_014920.1|WP_013526332.1|1555217_1555688_+|pantetheine-phosphate-adenylyltransferase
MTSVIYPGTFDPITNGHLDIIERSAVIFPRVLVSVANSPSKKPLFSLDERVELVRQSVVHLSNVEVFGFSDLLANVIKQHNISAIIRGVRTTTDFEYELQLAALNRLLTKGVDSLFFPPVEKWAFVSSSIVREIYLHGGDVAELVPVSVFNALKAR
>NC_014920.1|WP_013526333.1|1555684_1555897_+|YceK/YidQ-family-lipoprotein
MIKTFIFLTALIVLSGCGSVVKLIDPTEKYTAYAGVAYDLEMAQQWGLPILDLPLSFLLDTVLLPYTWAQ
>NC_014920.1|WP_013526334.1|1555902_1557918_+|DNA-helicase-Rep
MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERVAHSIGKEQSKGLLVSTFHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALARDAKYQTFAKCYERYATQIRTYNALDFDDLIMLPTLLFKQNEEVRSRWQAKIRYLLVDEYQDTNTSQYELIKLLVGERACFTVVGDDDQSIYSWRGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHCANILIDNNEHVFDKKLFSTIGKGEKLLVIEAKNEEHEAERIVAELIAHRFSRKTKYKDYAILYRGNHQSRLLEKVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKTYDSLQKFGRWIVELNDEIQRSEPERAVRSMLSAIHYEEYLYEYATNPKAAEMQSKNVATLFDWVADMLKGDETNEPMNLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSIDEDNVEEERRLAYVGITRAQKELTFSLCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQEKTQNQLDRLRAILKGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

63945 : 117875

Haemophilus_virus(57.5%)

head,tail,plate,portal,tRNA,holin,capsid,integrase

attL 103249:103266|attR 125253:125270

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525421.1\|63945_64422_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005649777.1\|64429_65728_+	N-acetylmuramoyl-L-alanine amidase	A0A142F1B8	Bacillus_phage	3.6e-08	39.8
WP_041174876.1\|65728_67618_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	9.4e-66	29.3
WP_005693854.1\|67625_68561_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_013525423.1\|68566_71512_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_013525424.1\|71596_73273_-	DNA repair protein RecN	NA	NA	NA	NA
WP_013525425.1\|73384_74275_-	NAD(+) kinase	NA	NA	NA	NA
WP_138571554.1\|74374_74971_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_005687534.1\|74983_75328_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013525427.1\|75320_75761_-	nucleotidyltransferase substrate binding protein	NA	NA	NA	NA
WP_013525428.1\|76041_78165_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	6.9e-259	62.2
WP_011271817.1\|78283_79144_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_011271818.1\|79304_80684_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	8.7e-53	29.7
WP_013525429.1\|80786_81296_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_013525430.1\|81350_82139_+	TatD family hydrolase	NA	NA	NA	NA
WP_041174877.1\|82200_82458_+	hypothetical protein	NA	NA	NA	NA
WP_013525431.1\|82468_82741_+	hypothetical protein	NA	NA	NA	NA
WP_013525432.1\|82790_83114_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.2e-15	41.4
WP_013525433.1\|83233_84229_-	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	6.4e-66	39.6
WP_013525434.1\|84241_85351_-	methionine biosynthesis PLP-dependent protein	NA	NA	NA	NA
WP_013525435.1\|86541_88143_-	hypothetical protein	Q94MX6	Haemophilus_virus	4.0e-283	98.7
WP_013525436.1\|88143_88704_-	hypothetical protein	Q94MX7	Haemophilus_virus	3.6e-82	97.3
WP_041174878.1\|88690_89458_-	hypothetical protein	Q94MX8	Haemophilus_virus	7.3e-134	98.8
WP_013525438.1\|89476_89746_-	hypothetical protein	Q776W9	Haemophilus_phage	5.3e-31	74.4
WP_013525439.1\|89724_90339_-	hypothetical protein	Q7Y5S1	Haemophilus_phage	2.1e-19	45.6
WP_013525440.1\|90417_90696_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	2.6e-17	46.7
WP_013525441.1\|90706_91024_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	4.1e-06	37.7
WP_013525442.1\|91069_93751_-\|tail	phage tail protein	Q94MY0	Haemophilus_virus	0.0e+00	63.9
WP_013525443.1\|93777_94302_-	hypothetical protein	Q94MY1	Haemophilus_virus	3.5e-95	97.7
WP_013525444.1\|94311_95481_-\|plate	baseplate J/gp47 family protein	Q94MY2	Haemophilus_virus	1.1e-205	92.7
WP_013525445.1\|95473_95809_-	DUF2590 family protein	Q94MY3	Haemophilus_virus	2.8e-50	94.6
WP_013525446.1\|95812_98089_-\|tail	phage tail tape measure protein	Q94MY4	Haemophilus_virus	3.5e-309	76.1
WP_013525447.1\|98275_98584_-	hypothetical protein	Q775G2	Haemophilus_virus	3.5e-47	98.0
WP_013525448.1\|98764_99112_-	hypothetical protein	Q94MY5	Haemophilus_virus	3.0e-47	89.6
WP_013525449.1\|99096_99657_-	lysozyme	Q94MY6	Haemophilus_virus	2.5e-91	92.7
WP_041174879.1\|99649_99886_-\|holin	holin	Q94MY7	Haemophilus_virus	5.3e-35	97.4
WP_013525450.1\|99972_100425_-	DUF2597 family protein	Q94MY8	Haemophilus_virus	1.2e-72	95.8
WP_013525451.1\|100428_101559_-	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	2.1e-214	97.3
WP_013525452.1\|101820_102546_-	phage virion morphogenesis protein	Q1I0Z5	Pasteurella_virus	1.8e-17	32.1
WP_013525453.1\|102542_103025_-\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	5.5e-55	63.5
WP_013525454.1\|103012_103465_-\|head	head completion/stabilization protein	Q94MZ2	Haemophilus_virus	3.4e-75	96.7
103249:103266	attL	NA	NA	NA	NA
WP_013525456.1\|104316_105327_-\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	1.4e-180	94.9
WP_013525457.1\|105330_106218_-\|capsid	GPO family capsid scaffolding protein	Q94MZ5	Haemophilus_virus	4.0e-91	68.0
WP_013525459.1\|108215_109250_+\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	6.9e-196	98.6
WP_013525460.1\|109331_109592_+	ogr/Delta-like zinc finger family protein	Q1I103	Pasteurella_virus	4.3e-22	52.4
WP_013525461.1\|109622_110030_-	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	4.7e-47	66.7
WP_041174880.1\|110093_110273_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	2.2e-17	72.9
WP_013525462.1\|110352_110871_-	phage N-6-adenine-methyltransferase	Q94MZ8	Haemophilus_virus	1.0e-94	97.0
WP_013525463.1\|110880_111186_-	hypothetical protein	Q94MZ9	Haemophilus_virus	5.8e-34	78.8
WP_013525464.1\|111197_113537_-	replication endonuclease	Q94N00	Haemophilus_virus	0.0e+00	94.1
WP_013525465.1\|113597_113933_-	hypothetical protein	P79676	Haemophilus_phage	1.6e-56	94.6
WP_013525466.1\|113951_114455_-	hypothetical protein	P79675	Haemophilus_phage	5.7e-79	91.6
WP_041174881.1\|114587_114827_-	hypothetical protein	NA	NA	NA	NA
WP_041174882.1\|114823_115015_-	hypothetical protein	NA	NA	NA	NA
WP_013525467.1\|115137_115512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158305131.1\|115642_115816_+	hypothetical protein	NA	NA	NA	NA
WP_041174883.1\|115856_116099_+	hypothetical protein	A0A0A7NPW2	Enterobacteria_phage	6.0e-18	59.5
WP_041174884.1\|116098_116302_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_041174885.1\|116338_116566_+	hypothetical protein	NA	NA	NA	NA
WP_041174886.1\|116565_116859_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013525469.1\|116861_117875_+\|integrase	site-specific integrase	P79671	Haemophilus_phage	2.2e-186	96.1
125253:125270	attR	NA	NA	NA	NA

DBSCAN-SWA_2

259012 : 267905

Streptococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525538.1\|259012_259828_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.4e-18	29.2
WP_013525539.1\|259827_260994_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_013525540.1\|261024_261918_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.9e-32	30.1
WP_005659998.1\|262090_262378_+	DUF5339 domain-containing protein	NA	NA	NA	NA
WP_013525541.1\|262429_263437_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.8e-08	26.3
WP_013525542.1\|263444_264059_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_005659992.1\|264121_264694_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	7.1e-09	27.2
WP_005649034.1\|264740_265481_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005686755.1\|265640_266117_-	dihydroneopterin triphosphate diphosphatase	A0A248SJK4	Salicola_phage	6.7e-05	30.4
WP_013525543.1\|266138_267905_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	5.6e-12	23.4

DBSCAN-SWA_3

318595 : 356625

Pseudomonas_phage(15.15%)

tail,plate,tRNA,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525575.1\|318595_320455_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.4e-109	42.5
WP_013525576.1\|320473_321160_-	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_005662651.1\|321210_321735_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_005688927.1\|321747_322071_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.3e-23	45.8
WP_005654861.1\|322128_322509_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.4e-53	80.6
WP_013525577.1\|322568_323783_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	5.1e-33	36.0
WP_013525578.1\|323850_324303_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_005691741.1\|324355_325081_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_013525579.1\|325728_326187_-	hypothetical protein	F6MIM0	Haemophilus_phage	4.9e-45	55.8
WP_013525580.1\|326183_326786_-	hypothetical protein	Q94MX9	Haemophilus_virus	5.0e-98	94.5
WP_013525581.1\|326797_329167_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	9.9e-214	60.1
WP_012054979.1\|329176_329791_-	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.0e-21	37.4
WP_013525582.1\|329799_331236_-\|plate	baseplate J/gp47 family protein	A0A0N9SH53	Pseudomonas_phage	1.4e-45	28.2
WP_005643324.1\|331228_331594_-	hypothetical protein	A0A1J0MEY0	Pectobacterium_phage	1.4e-10	35.4
WP_013525583.1\|331590_332262_-\|plate	phage baseplate protein	A0A0M5M1K7	Salmonella_phage	2.6e-18	32.6
WP_013525584.1\|332258_333221_-	hypothetical protein	E5AGC0	Erwinia_phage	5.9e-32	29.9
WP_013525585.1\|333217_333532_-	hypothetical protein	NA	NA	NA	NA
WP_013525586.1\|333528_334110_-	hypothetical protein	I3PGV3	Xanthomonas_phage	1.5e-06	28.4
WP_013525587.1\|334271_334994_+	hypothetical protein	A6XMM0	Bacillus_virus	5.8e-24	46.4
WP_013525588.1\|335068_337486_-	tape measure protein	H9EB42	Vibrio_phage	1.6e-33	28.0
WP_005643340.1\|337482_337635_-	hypothetical protein	NA	NA	NA	NA
WP_013525589.1\|337670_338153_-	hypothetical protein	NA	NA	NA	NA
WP_005643344.1\|338152_338578_-	DUF3277 family protein	A0A0A1IUI2	Pseudomonas_phage	2.6e-16	36.9
WP_013525590.1\|338623_339697_-	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	4.8e-59	41.0
WP_013525591.1\|339683_340193_-	hypothetical protein	NA	NA	NA	NA
WP_013525592.1\|340194_340554_-	hypothetical protein	NA	NA	NA	NA
WP_013525593.1\|340553_341012_-	hypothetical protein	A0A2I7R754	Vibrio_phage	4.1e-15	34.5
WP_013525594.1\|341004_341355_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_005692571.1\|341358_341547_-	hypothetical protein	NA	NA	NA	NA
WP_013525595.1\|341549_342551_-	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	2.9e-50	36.2
WP_013525596.1\|342558_342978_-	DUF2190 family protein	NA	NA	NA	NA
WP_005692574.1\|342990_344064_-	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	1.2e-54	40.2
WP_041174890.1\|344189_345407_-\|capsid	minor capsid protein	A0A2D2W1Z9	Sinorhizobium_phage	2.6e-24	38.0
WP_013525598.1\|345387_346704_-	DUF1073 domain-containing protein	A0A2K9V3H1	Faecalibacterium_phage	1.8e-47	32.0
WP_013525599.1\|346705_348055_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	5.5e-145	58.2
WP_005651145.1\|348035_348404_-	LuxR family transcriptional regulator	A0A0R6PHW5	Moraxella_phage	3.4e-12	39.3
WP_005692583.1\|348461_348683_+	hypothetical protein	NA	NA	NA	NA
WP_012054986.1\|348679_350035_-	ParB N-terminal domain-containing protein	A0A0E3U266	Fusobacterium_phage	1.8e-98	44.8
WP_013525600.1\|350046_350277_-	hypothetical protein	NA	NA	NA	NA
WP_013527467.1\|350251_350641_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_013525602.1\|350637_351042_-	M15 family metallopeptidase	W0LI70	Edwardsiella_phage	3.9e-46	68.7
WP_013525603.1\|351028_351355_-	hypothetical protein	NA	NA	NA	NA
WP_171034551.1\|351365_351527_-	hypothetical protein	NA	NA	NA	NA
WP_013525604.1\|351777_352746_-	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	2.4e-17	30.4
WP_006995067.1\|352879_353086_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	8.7e-10	48.3
WP_005651123.1\|353129_353582_+	hypothetical protein	NA	NA	NA	NA
WP_013525605.1\|353627_353861_+	helix-turn-helix domain-containing protein	A0A0M3LR73	Mannheimia_phage	2.3e-14	60.3
WP_013525606.1\|353862_354645_+	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	4.3e-41	45.1
WP_013525607.1\|354629_355271_+	replication P	NA	NA	NA	NA
WP_005633909.1\|355267_355492_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_005651114.1\|355528_355945_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.1e-62	84.7
WP_013525608.1\|356037_356625_+	recombination protein NinG	A0A2I7RAC0	Vibrio_phage	1.7e-37	48.5

DBSCAN-SWA_4

359958 : 451995

103

Haemophilus_phage(17.39%)

transposase,tail,plate,tRNA,integrase,terminase

attL 369931:369957|attR 446931:446957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525612.1\|359958_360990_+	HNH endonuclease	D0UIK6	Aggregatibacter_phage	5.2e-42	82.8
WP_013525613.1\|361080_361818_+	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	5.2e-113	77.5
WP_013525614.1\|361831_362179_+	hypothetical protein	NA	NA	NA	NA
WP_041174891.1\|362175_362469_+	hypothetical protein	NA	NA	NA	NA
WP_013525615.1\|362481_363432_+	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	1.0e-108	68.3
WP_013525616.1\|363406_364057_+	hypothetical protein	A0A0M3LP90	Mannheimia_phage	1.2e-84	71.6
WP_013525617.1\|364056_364491_+	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	7.5e-19	36.2
WP_013525618.1\|364552_365629_+	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	7.3e-07	61.9
WP_158305132.1\|365753_365897_+	hypothetical protein	NA	NA	NA	NA
WP_013525619.1\|365907_366477_+	hypothetical protein	NA	NA	NA	NA
WP_013525620.1\|366473_366710_+	hypothetical protein	NA	NA	NA	NA
WP_013525621.1\|366706_367066_+	hypothetical protein	NA	NA	NA	NA
WP_012054998.1\|367073_368348_+	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	7.7e-96	46.9
WP_005651292.1\|368395_368812_+	hypothetical protein	E5E463	Acinetobacter_phage	1.3e-07	65.2
WP_013525622.1\|368883_369417_+	hypothetical protein	NA	NA	NA	NA
WP_005668271.1\|369681_369951_+	hypothetical protein	NA	NA	NA	NA
369931:369957	attL	NA	NA	NA	NA
WP_013525623.1\|369954_370392_+	hypothetical protein	A0A2K9V3W6	Faecalibacterium_phage	2.0e-24	37.6
WP_005641600.1\|370733_371759_+\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	7.4e-57	35.4
WP_005658075.1\|372411_372969_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_013525624.1\|373243_374434_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_013525625.1\|374818_376180_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_005653606.1\|376292_376799_+	DUF2301 domain-containing membrane protein	NA	NA	NA	NA
WP_013525626.1\|376848_377856_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_005658066.1\|378033_378804_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	NA	NA	NA	NA
WP_013525627.1\|378803_379913_-	murein transglycosylase A	NA	NA	NA	NA
WP_013525628.1\|380306_382442_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_005654899.1\|388647_389577_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005665596.1\|389586_390321_+	azaleucine resistance protein AzlC	NA	NA	NA	NA
WP_013525629.1\|390317_390647_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_005632089.1\|390749_390983_+	YgjV family protein	NA	NA	NA	NA
WP_013525630.1\|391058_392642_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.6e-29	26.1
WP_005649928.1\|392820_393609_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013525631.1\|393690_395670_+	exoribonuclease II	NA	NA	NA	NA
WP_041174892.1\|395647_396520_+	YadA-like family protein	NA	NA	NA	NA
WP_013525632.1\|396752_397394_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_013525633.1\|397390_398320_+	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA
WP_005688057.1\|398306_399044_+	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_005688055.1\|399087_400281_+	divalent metal cation transporter	NA	NA	NA	NA
WP_005688053.1\|400351_401686_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	8.4e-53	79.4
WP_005688052.1\|401841_402714_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.1e-50	36.0
WP_013525634.1\|402879_405228_-	penicillin-binding protein 1B	NA	NA	NA	NA
WP_010869281.1\|405234_405588_-	YacL family protein	NA	NA	NA	NA
WP_005670302.1\|405589_405934_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.7e-26	48.6
WP_005649958.1\|406069_406876_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_013525636.1\|406969_409561_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_013525637.1\|409635_410703_+	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_013525638.1\|411008_411557_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-29	40.4
WP_013525639.1\|411627_412668_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_013525640.1\|412826_413084_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_013525641.1\|413163_414891_+	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	9.6e-17	32.6
WP_005654343.1\|414950_415451_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_006995782.1\|415634_415802_+	hypothetical protein	NA	NA	NA	NA
WP_006995783.1\|415951_416317_+	YgiW/YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_013525642.1\|416380_417043_+	response regulator	NA	NA	NA	NA
WP_013525643.1\|417039_418395_+	two-component system sensor histidine kinase QseC	NA	NA	NA	NA
WP_041174894.1\|419242_419506_+	hypothetical protein	F6MIM3	Haemophilus_phage	7.2e-33	76.7
WP_013525645.1\|419545_420391_-	hypothetical protein	F6MIM2	Haemophilus_phage	4.0e-117	71.7
WP_041174895.1\|420447_420567_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013525646.1\|420742_421243_-	hypothetical protein	F6MIM0	Haemophilus_phage	8.5e-51	60.4
WP_013525647.1\|421239_421842_-	hypothetical protein	Q94MX9	Haemophilus_virus	2.6e-94	91.0
WP_013525648.1\|421853_423563_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	2.2e-154	65.9
WP_005658855.1\|423594_424164_-\|tail	phage tail protein	A4JWL7	Burkholderia_virus	4.5e-40	45.3
WP_013525649.1\|424156_425263_-\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	2.3e-56	36.2
WP_013525650.1\|425262_425628_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_005658861.1\|425682_426291_-\|plate	phage baseplate assembly protein V	A0A291LA20	Bordetella_phage	2.2e-08	42.1
WP_013525651.1\|426277_427342_-	hypothetical protein	NA	NA	NA	NA
WP_016533315.1\|427334_427565_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	7.2e-13	47.8
WP_013525652.1\|427545_428478_-\|tail	phage tail protein	NA	NA	NA	NA
WP_013525653.1\|428477_431069_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.7e-41	29.6
WP_041174896.1\|431114_431429_+	hypothetical protein	NA	NA	NA	NA
WP_080567384.1\|431413_431560_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_005640664.1\|431543_431828_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_013525654.1\|431921_432440_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-37	45.6
WP_005661612.1\|432450_433836_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	5.2e-98	44.3
WP_005658884.1\|433845_434343_-	hypothetical protein	NA	NA	NA	NA
WP_005658887.1\|434354_434789_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	4.4e-19	36.4
WP_013525655.1\|434788_435106_-	hypothetical protein	NA	NA	NA	NA
WP_013525656.1\|435171_436098_-	hypothetical protein	A4JWK0	Burkholderia_virus	1.0e-73	47.9
WP_013525657.1\|436116_437220_-	hypothetical protein	A4JWJ9	Burkholderia_virus	1.2e-65	39.2
WP_005661604.1\|437462_437963_-	phage virion morphogenesis protein	G8GWE3	Rhodobacter_phage	3.8e-14	31.5
WP_041174897.1\|438165_438354_-	hypothetical protein	NA	NA	NA	NA
WP_013525658.1\|438540_439818_-	mu gp30-like protein	J9STS2	Pseudomonas_phage	2.8e-53	47.6
WP_013525659.1\|439818_441234_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	1.3e-112	45.0
WP_005658905.1\|441235_442558_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	1.8e-148	64.2
WP_005658907.1\|442541_443090_-	DUF3486 family protein	Q6QIC2	Burkholderia_phage	5.9e-29	40.3
WP_005658909.1\|443099_443402_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	3.1e-24	52.0
WP_005658911.1\|443398_443707_-	hypothetical protein	Q6QIC4	Burkholderia_phage	6.3e-12	39.4
WP_013525660.1\|443703_444087_-	DUF2681 domain-containing protein	F6MIK2	Haemophilus_phage	5.4e-05	52.1
WP_041174898.1\|444083_444314_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	4.4e-18	69.3
WP_005658921.1\|444401_444545_-	hypothetical protein	NA	NA	NA	NA
WP_013525661.1\|444553_445090_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	7.2e-72	68.0
WP_005658925.1\|445176_445596_-	hypothetical protein	NA	NA	NA	NA
WP_005658927.1\|445669_446044_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	1.9e-23	46.2
WP_005658929.1\|446047_446536_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	4.8e-14	31.7
WP_041174899.1\|446645_446933_-	hypothetical protein	NA	NA	NA	NA
WP_041174900.1\|446936_447167_-	DUF551 domain-containing protein	NA	NA	NA	NA
446931:446957	attR	NA	NA	NA	NA
WP_013525663.1\|447167_447542_-	hypothetical protein	F6MIJ4	Haemophilus_phage	5.3e-29	51.2
WP_041174901.1\|447614_447833_-	hypothetical protein	NA	NA	NA	NA
WP_171034535.1\|447829_447988_-	hypothetical protein	NA	NA	NA	NA
WP_041174902.1\|447997_448195_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_013525664.1\|448299_448818_-	host-nuclease inhibitor Gam family protein	F6MIJ0	Haemophilus_phage	5.4e-48	58.1
WP_041174903.1\|448839_449043_-	hypothetical protein	NA	NA	NA	NA
WP_013525667.1\|449985_451995_-\|transposase	Mu transposase C-terminal domain-containing protein	M4M9R2	Vibrio_phage	1.8e-99	35.7

DBSCAN-SWA_5

855519 : 899494

Haemophilus_phage(46.94%)

tail,plate,holin,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525886.1\|855519_856398_+\|holin	choline transport protein LicB	NA	NA	NA	NA
WP_013525887.1\|856394_857096_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_013525909.1\|857095_857893_+	LicD family protein	A0A1V0SD50	Indivirus	1.1e-07	37.4
WP_013525910.1\|858266_858683_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	4.8e-47	68.6
WP_013525911.1\|858806_859514_-	hypothetical protein	A0A0M3LSH7	Mannheimia_phage	9.9e-61	55.2
WP_011961987.1\|859525_859759_-	DUF935 family protein	B7SDN1	Haemophilus_phage	2.1e-20	68.9
WP_006996123.1\|859758_860229_+	hypothetical protein	Q94N00	Haemophilus_virus	6.6e-21	39.0
WP_006996122.1\|860283_860442_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	3.4e-14	81.4
WP_013525915.1\|861950_862442_-	hypothetical protein	F6MIM0	Haemophilus_phage	3.8e-51	60.4
WP_013525647.1\|862438_863041_-	hypothetical protein	Q94MX9	Haemophilus_virus	2.6e-94	91.0
WP_013525916.1\|863052_865296_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	7.9e-221	65.8
WP_005684190.1\|865305_865881_-	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	3.5e-88	79.1
WP_013525917.1\|865880_867023_-\|plate	baseplate J/gp47 family protein	Q7Y5S4	Haemophilus_phage	1.6e-185	87.1
WP_013525918.1\|867065_867584_-	phage antirepressor N-terminal domain-containing protein	A0A0M4REH5	Salmonella_phage	9.8e-34	52.0
WP_013525919.1\|867768_868122_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	4.8e-56	87.8
WP_013525920.1\|868118_868763_-	hypothetical protein	D0UIH7	Aggregatibacter_phage	1.2e-94	79.9
WP_013525921.1\|868759_869632_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	2.7e-140	86.6
WP_041174930.1\|869646_869826_-	hypothetical protein	D0UIH9	Aggregatibacter_phage	1.9e-21	94.9
WP_013525922.1\|869908_870217_-	hypothetical protein	D0UII0	Aggregatibacter_phage	1.9e-45	80.4
WP_013525923.1\|870222_870999_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.0e-83	66.1
WP_013525924.1\|871004_873095_-	hypothetical protein	Q7Y5T2	Haemophilus_phage	6.2e-212	69.2
WP_006996369.1\|873245_873656_-	hypothetical protein	Q776V6	Haemophilus_phage	5.9e-50	70.8
WP_006996370.1\|873655_874087_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.9e-71	93.0
WP_006996371.1\|874096_874255_-	hypothetical protein	NA	NA	NA	NA
WP_013525926.1\|874331_875840_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	3.5e-249	86.9
WP_013525927.1\|875844_876207_-	hypothetical protein	Q7Y5T6	Haemophilus_phage	6.6e-45	73.9
WP_013525928.1\|876271_876643_-	hypothetical protein	Q776V7	Haemophilus_phage	1.8e-45	71.5
WP_006996375.1\|876639_877086_-	hypothetical protein	Q7Y5T8	Haemophilus_phage	6.7e-55	72.3
WP_013525929.1\|877086_877449_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	4.4e-33	66.4
WP_006996377.1\|877458_878373_-	DUF2184 domain-containing protein	Q7Y5U0	Haemophilus_phage	1.7e-150	89.5
WP_006996378.1\|878382_878823_-	hypothetical protein	D0UIJ1	Aggregatibacter_phage	2.3e-47	71.1
WP_041174931.1\|878835_879936_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	4.4e-140	87.0
WP_006996380.1\|879997_880354_-	DUF2513 domain-containing protein	A0A1W6JNL0	Staphylococcus_phage	7.8e-06	31.7
WP_013525931.1\|880632_882066_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	1.7e-88	77.2
WP_013525932.1\|882094_883426_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	1.5e-211	84.2
WP_006996384.1\|883427_884771_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	3.1e-124	53.7
WP_005693952.1\|884757_885273_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	5.6e-21	40.9
WP_006996386.1\|885570_885918_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	4.4e-22	56.1
WP_013525933.1\|885919_886201_-	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-29	72.2
WP_041174932.1\|886112_886436_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	7.8e-21	54.2
WP_013525934.1\|886428_887031_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.7e-56	53.4
WP_013525935.1\|886999_887356_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_005643389.1\|887551_887725_-	hypothetical protein	D0UIH9	Aggregatibacter_phage	8.9e-08	53.7
WP_005666916.1\|888130_888268_-	hypothetical protein	NA	NA	NA	NA
WP_013525936.1\|888342_889242_-	hypothetical protein	D0UIK6	Aggregatibacter_phage	1.5e-77	53.7
WP_041174933.1\|889879_890062_+	hypothetical protein	NA	NA	NA	NA
WP_041174934.1\|890106_890556_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.8e-23	38.3
WP_041174935.1\|890587_890770_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_005650528.1\|890869_891241_-	hypothetical protein	NA	NA	NA	NA
WP_013525938.1\|891237_891780_-	recombination protein NinG	D0UIK8	Aggregatibacter_phage	2.6e-61	67.2
WP_013525939.1\|891872_892289_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	4.7e-63	84.7
WP_041174936.1\|892325_892550_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_013525940.1\|892546_893188_-	replication P	NA	NA	NA	NA
WP_013525941.1\|893926_894595_-	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	2.4e-56	53.0
WP_005656655.1\|894642_894939_-	hypothetical protein	Q7Y5W3	Haemophilus_phage	2.0e-31	70.4
WP_041175006.1\|894959_895172_-	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	8.1e-11	51.5
WP_013525942.1\|895313_896006_+	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	9.2e-19	31.2
WP_013525943.1\|896137_897082_+	hypothetical protein	NA	NA	NA	NA
WP_041174937.1\|898453_898546_+	hypothetical protein	NA	NA	NA	NA
WP_013525944.1\|898855_899494_+	KilA-N domain-containing protein	D0UIK6	Aggregatibacter_phage	1.1e-42	73.7

DBSCAN-SWA_6

904470 : 911373

Aggregatibacter_phage(42.86%)

integrase

attL 905442:905457|attR 922420:922435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525950.1\|904470_905154_+	KilA-N domain-containing protein	D0UIK6	Aggregatibacter_phage	2.5e-45	81.9
WP_013525951.1\|905362_906007_+	hypothetical protein	A0A0M3LP90	Mannheimia_phage	1.5e-84	71.4
905442:905457	attL	NA	NA	NA	NA
WP_013525952.1\|906006_906441_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.3e-18	35.1
WP_005652248.1\|906500_906680_-	hypothetical protein	Q19US2	Mannheimia_phage	1.8e-11	62.1
WP_041174939.1\|907000_907237_+	hypothetical protein	NA	NA	NA	NA
WP_013525953.1\|907233_907584_+	hypothetical protein	NA	NA	NA	NA
WP_005684834.1\|907727_908168_+	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	1.9e-49	65.8
WP_013525954.1\|908154_908508_+	hypothetical protein	NA	NA	NA	NA
WP_013525955.1\|908838_909690_+	ORF6C domain-containing protein	D0UIK6	Aggregatibacter_phage	1.1e-53	42.1
WP_032826372.1\|909928_910129_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_013525956.1\|910125_911373_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.1e-73	36.9
922420:922435	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1021124 : 1029638

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013526026.1\|1021124_1021808_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.9e-54	50.2
WP_013526027.1\|1021800_1022226_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.5e-19	42.0
WP_005686506.1\|1022226_1022862_+	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	2.9e-11	35.2
WP_041175009.1\|1023476_1025657_+	DNA helicase II	A7KV33	Bacillus_phage	8.7e-116	37.6
WP_005694256.1\|1025746_1026748_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013526030.1\|1026762_1027650_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013526031.1\|1027659_1028652_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
WP_005663823.1\|1028654_1029638_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-17	27.3

DBSCAN-SWA_8

1249276 : 1264996

Haemophilus_phage(58.82%)

capsid,head,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013526153.1\|1249276_1249708_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	1.2e-37	61.6
WP_013526154.1\|1249717_1250053_-	hypothetical protein	B7SDP3	Haemophilus_phage	4.4e-19	55.4
WP_013526155.1\|1250088_1251009_-\|head	Mu-like prophage major head subunit gpT family protein	A0A0M3LQ11	Mannheimia_phage	1.0e-110	62.9
WP_086935082.1\|1251008_1251998_-\|protease	phage protease	A0A0M3LPA7	Mannheimia_phage	5.8e-67	45.6
WP_013526157.1\|1251885_1252239_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	3.1e-23	67.9
WP_013526158.1\|1252381_1253698_-\|capsid	minor capsid protein	A0A0M3LSH7	Mannheimia_phage	2.0e-168	67.7
WP_013526159.1\|1255382_1257032_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	1.1e-248	79.7
WP_013526160.1\|1257181_1257682_-	DUF1804 family protein	F6MIK6	Haemophilus_phage	4.1e-45	51.8
WP_005661915.1\|1257683_1257950_-	hypothetical protein	NA	NA	NA	NA
WP_005684166.1\|1257949_1258207_-	hypothetical protein	NA	NA	NA	NA
WP_013526161.1\|1258330_1258588_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_041174960.1\|1258587_1258878_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	3.3e-15	61.4
WP_013526163.1\|1259031_1259535_-	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	4.9e-54	63.1
WP_013526164.1\|1259615_1260044_-	hypothetical protein	F6MIJ8	Haemophilus_phage	2.5e-27	42.3
WP_013526165.1\|1260155_1260572_-	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	3.8e-52	75.2
WP_041174961.1\|1260626_1260803_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	5.9e-23	87.9
WP_005641522.1\|1260928_1261147_-	hypothetical protein	NA	NA	NA	NA
WP_013526166.1\|1261157_1261799_-	antA/AntB antirepressor family protein	Q7Y5W2	Haemophilus_phage	3.7e-22	41.8
WP_006996626.1\|1262335_1262539_-	KilA-N domain-containing protein	NA	NA	NA	NA
WP_013526167.1\|1262565_1262964_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	5.3e-19	43.7
WP_006996624.1\|1263204_1263453_-	hypothetical protein	NA	NA	NA	NA
WP_006996623.1\|1263457_1263631_-	hypothetical protein	NA	NA	NA	NA
WP_171034544.1\|1263627_1263792_-	hypothetical protein	NA	NA	NA	NA
WP_006996621.1\|1263802_1264000_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_013526168.1\|1264186_1264804_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	6.8e-66	58.8
WP_005647090.1\|1264804_1264996_-	HTH domain-containing protein	F6MII8	Haemophilus_phage	9.5e-11	57.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage