CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014922	Haemophilus influenzae F3047, complete genome	1 crisprs	DinG,DEDDh,cas3,cas14j	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014922_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014922_1

1737674-1737763

Orphan

Consensus_repeat	Method
ACGCCACGTTTTTAATTAGTTGTAGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014922_1

>merge|NC_014922|1|1737674-1737763|CRISPRCasFinder
ACGCCACGTTTTTAATTAGTTGTAGGGTGGGCATAAGCCCACGTGTTTGTCATATACCTCCACGCCACGTTTTTAATTGGTTGTAGGGTG

>NC_014922|1|1|1737674-1737763|CRISPRCasFinder
ACGCCACGTTTTTAATTAGTTGTAGGGTG	GGCATAAGCCCACGTGTTTGTCATATACCTCC
ACGCCACGTTTTTAATTGGTTGTAGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014922.1\|WP_013527767.1\|1742513_1743212_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NC_014922.1\|WP_013527759.1\|1729573_1730521_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_014922.1\|WP_041175201.1\|1743681_1744347_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_014922.1\|WP_013527765.1\|1739210_1739876_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_014922.1\|WP_013527757.1\|1727998_1728619_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|129639
NC_014922.1\|WP_012055490.1\|1734151_1734766_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NC_014922.1\|WP_013527770.1\|1745123_1746212_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|223105
NC_014922.1\|WP_013527761.1\|1731988_1732705_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NC_014922.1\|WP_013527763.1\|1734837_1737447_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_014922.1\|WP_013527766.1\|1739893_1742407_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_014922.1\|WP_013527756.1\|1726676_1727927_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NC_014922.1\|WP_013527773.1\|1748319_1748952_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_014922.1\|WP_013527760.1\|1730603_1731791_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_014922.1\|WP_013527769.1\|1744559_1745054_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NC_014922.1\|WP_013527755.1\|1726058_1726670_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|225645
NC_014922.1\|WP_013527772.1\|1747700_1748318_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NC_014922.1\|WP_013527762.1\|1732713_1734108_-\|sodium-coupled-multidrug-efflux-MATE-transporter-HmrM	unknown	unknown	gnl\|CDD\|234981
NC_014922.1\|WP_041175231.1\|1728630_1729572_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NC_014922.1\|WP_013527771.1\|1746351_1747542_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_014922.1\|WP_013527764.1\|1737867_1739187_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069

Protein	Function_ID	Function_description	E-value
NC_014922.1\|WP_013527767.1\|1742513_1743212_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.6919e-75
NC_014922.1\|WP_013527759.1\|1729573_1730521_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_014922.1\|WP_041175201.1\|1743681_1744347_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.44216e-16
NC_014922.1\|WP_013527765.1\|1739210_1739876_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.19572e-22
NC_014922.1\|WP_013527757.1\|1727998_1728619_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|129639	TIGR00548, Outer-membrane_lipoprotein_lolB_precursor., outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM. [Protein fate, Protein and peptide secretion and trafficking].	4.35627e-101
NC_014922.1\|WP_012055490.1\|1734151_1734766_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.9084e-113
NC_014922.1\|WP_013527770.1\|1745123_1746212_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|223105	COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism].	4.66126e-166
NC_014922.1\|WP_013527761.1\|1731988_1732705_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.77496e-130
NC_014922.1\|WP_013527763.1\|1734837_1737447_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_014922.1\|WP_013527766.1\|1739893_1742407_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_014922.1\|WP_013527756.1\|1726676_1727927_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NC_014922.1\|WP_013527773.1\|1748319_1748952_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.47968e-14
NC_014922.1\|WP_013527760.1\|1730603_1731791_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_014922.1\|WP_013527769.1\|1744559_1745054_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	7.05516e-89
NC_014922.1\|WP_013527755.1\|1726058_1726670_+\|SH3-domain-containing-protein	gnl\|CDD\|225645	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms].	1.18287e-84
NC_014922.1\|WP_013527772.1\|1747700_1748318_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	2.09413e-71
NC_014922.1\|WP_013527762.1\|1732713_1734108_-\|sodium-coupled-multidrug-efflux-MATE-transporter-HmrM	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NC_014922.1\|WP_041175231.1\|1728630_1729572_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.24874e-178
NC_014922.1\|WP_013527771.1\|1746351_1747542_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_014922.1\|WP_013527764.1\|1737867_1739187_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.51439e-07

>NC_014922.1|WP_013527763.1|1734837_1737447_-|aminopeptidase-N
MLAKAKYRKDYKQPDFTVTDIYLDFQLDPKHTVVTATSKFQRLNDEATSLRLDGHSFQFSSIKFNGEPFFAYQQDGESLTLDLKDKSAEEFELEIVTFLVPAENTSLQGLYQSGEGICTQCEAEGFRQITYMLDRPDVLARYTTKITADKSKYPFLLSNGNRIASGELEDGRHWVEWNDPFPKPSYLFALVAGDFDLLQDKFVTKSGREVALELYVDRGNLNRATWAMESLKKAMKWDEDRFNLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKFVLANPQTATDDDYLAIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDTGSRAVNRINNVKFLRTVQFAEDASPMSHPIRPEKVIEMNNFYTVTVYEKGAEVIRMLHTLLGEQGFQKGMQLYIAENDGKAATCEDFVSAMERANNLDLNQFRRWYSQSGTPELLISDAYDEKTHTYRLTVSQSTPPTADQMEKVNLHIPLKVALYDANGTKQMLQHNGELLSDVLNVTEKDQVFEFHGIYGRPIPALLCDFSAPVKLDYDYKTEQLLGLLKFADNQFIRWDAAQMLFTQELRRNVVRFQQGEPLEISPEILTALSYVLNHYEKDIELATLILTLPKEMEFAEGFKTIDPDGISAARAFMQAQIAESLKDDFLRVYTHIRLDDYQVTQQDIALRAMRNLCLTYLAYTNLGNNLVQKHYNNANNMTDTLAALSVATKAALPCRDALLADFEQKWQHDGLVMDKWFALQATRPDENVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALEHLSIVENLSKDLFEKIEKALQ
>NC_014922.1|WP_012055490.1|1734151_1734766_+|riboflavin-synthase
MFTGIVQGTAPIHSIKEKANFRTQVVKLLPEMRKDLEIGASIANNGVCLTVTEINGDLVSFDLMQETLKITNLGTVKVGDYVNIERAMQMGTEIGGHLLSGHIYCTAKISDIIASENNRQIWFELPSADVMKYILTKGFVAVDGISLTIGEVKGTQFCVNLIPETLQRTLMGQRKVGDIVNIEIDPQTQAIVDTVENYLQSKNF
>NC_014922.1|WP_013527762.1|1732713_1734108_-|sodium-coupled-multidrug-efflux-MATE-transporter-HmrM
MNFRLLSQYHADIKNLIKISLPILLAQIAQNSMGLADTIMAGRVSSTDMAAISIGASIWMPLMLFGQGLLLALPPTISYLNGSGQRHRIAHQVRQGIWLVLGVSIPLGLLIYFCEIPLQYMQMESKMSDLARDYLHAMLWGLPAYLMLINFRCLNDGIAKTKPAMVITFLGLLINIPLNYIFIYGKFDIPAFGAVGCGIATAIVNWAMCLMMMFYSYTNAQERSLKVFSQLIEMPNPKTLKKLLRLGLPIAIALCCEVALFALTSLMLSPLGSTVVASHQITLNTSSFIFMFPMSIGMATTILVGQALGTGSPQKAKKMSYAALLLGLTVTIITTLITIFFRYEIASIFVTDEIVIAMAANLLLFAALYQFSDTVQMVVSGILRGYKDTKVILYITLFSYWVIGVPLGYTLGRTNWLVPHIDAKGFWIAFVVSLTFAAILLSLRMKKMQAMSDKAILQRLEKLK
>NC_014922.1|WP_013527761.1|1731988_1732705_-|DNA/RNA-nuclease-SfsA
MQLPALQSAKLIRRYKRFLADIELPTGDVMTMHCANTGAMTGCGEKGDTIWYSHSDSQTRKYPHSWELTQLANGQLCCINTHRSNQLVFEALQNKQIKELAMYDEIYPEVKYGEENSRIDFLLKGKGLPDCYVEVKSITLVKGNLGMFPDAVTTRGQKHVRELLAMKKQGHRAVVLFAGLHNGFDRFKIAEYIDPEYDRLLKEAMEQGVESYAYAGKFEISNEIPTALSLTESVPYIK
>NC_014922.1|WP_013527760.1|1730603_1731791_-|tyrosine--tRNA-ligase
MTDIHTVLAELKRGTDEILSEADLIEKLKENRPLKVKLGADPTAPDIHLGHTVVLNKLRQFQQLGHEVYFLIGDFTGMVGDPSGKNATRPPLSREDVLRNAETYKEQIYKILDPQKTKIVFNSEWLSKLGTEGMIRLTSNYTVARMLERDDFKKRFGNNQPIAIHEFIYPLLQGYDSVALDADVELGGTDQKFNLLVGRELQKSAGKKPQVAITLPLLVGLDGEKKMSKSLGNYIGVTEAPSDMFGKVMSISDELMWDWYNLLSFRPLSEIAQLKSEVEKGKNPRDVKILLAKELIARFHNEEAANAAEQEFINRFQKGAMPDEMPEFTFSGEIGLATLLKEAGLVPSTSEAIRSAQQGGVKINGEKVNNVKDNAPKGTNVYQVGKRKFARVTVE
>NC_014922.1|WP_013527759.1|1729573_1730521_+|ribose-phosphate-pyrophosphokinase
MPDIKLFAGNATPELAKRISERLYISLGDATVARFSDGEIQVQINENVRGADVFIIQSTCVPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADLLSIVGIDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIHDILKKSDLKNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPRANVAQVMHIIGDVADRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGAAAKNLASDAIDEVVVTDTIPLSEEMKAIGKVRVLTLSSMLAEAIRRISNEESISAMFN
>NC_014922.1|WP_041175231.1|1728630_1729572_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKSHQFSTALCQNTTQSNGQPLRFPSPAKLNLFLYINGKLPNGYHELQTLFQFLDFGDWLDISIREQDNQIVLTPEIPNLKTEDNLIYRATKLLQEKANIQLGANIHLDKILPMGGGVGGGSSNAATALLALNYLWQANLSIDDLAKLGLTLGADVPIFVHGQAAFAEGVGEKITYCEPVEKWFVVLKPDDSISTAVIFQDPNLPRNTPKKSLEQLLSEPYKNDCEKVVINHYSNVEKALNWLLQYAPARLTGTGACVFAEFDNEAEAQAVFRQKPKEFFGFVAKGLNVSPLHAMLKQLSSTHTHRQSKPEVL
>NC_014922.1|WP_013527757.1|1727998_1728619_+|outer-membrane-lipoprotein-LolB
MKTFKFLTALFTTAILTACTLDMERPTNVQYIDKTDAIWQQHLQKIQKIQSYQAKGQIGYISPTERFSSRFEWQYQNPKSYTLKLYSLISKSTLLIQMHQSGMTISDNNGNQQSAANVKQLLQEIIGMDIPLEHLAYWLKGQPAMNADYQVGTNHLLGAFTYHVDGSQWTADYLTYHSNNSMPENILLKNDSTKQTLKIRVDEWIY
>NC_014922.1|WP_013527756.1|1726676_1727927_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKTKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEVIDPYGGKQDLENRILRHISPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELEHLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFIHTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLCKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQRFQEFLQVCLADTRGRTGFKNKDYPQIDYINQLLHSANEVDVQQVIADGFEKQAIKNELTKRRILAVKQTKTNYPKN
>NC_014922.1|WP_013527755.1|1726058_1726670_+|SH3-domain-containing-protein
MKKIYKALISSLLLSTSINVAYAETQYVTENLSTFLRRGAGEQFKIAGSIQAGEAVNVLDRQGKYTLIRDNKNREAWILNSDLSSTPSSKEENPKLKAQVQELTLKLSRLDGNWQQRTVEMQRQTKQAEQQSADLLEQNSQLKRELEMTKNKNRDLEAILDAGKREIAIQWFIYGGSVLGVGLLFGLLIPYVLPKRRRRDGWA
>NC_014922.1|WP_013527764.1|1737867_1739187_-|type-1-fimbrial-protein
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTANAVSSGRSPITRTYTFSGDTQMKVTSSQPAYIVFSKARDNPNSGHFQSSEVNAQPNSLAPFNEWIYTQSLTEIGYSFAGFSCSSHPCPQMQLPLLLYPDNAYLNPTSQKDDDGGIIFALRNKPNVGISFQVGVRTNNIQEWVSVTSNSNATFLKVLRAYFNSQDKTLFDLRAKFHLLTDFSSLGNDEVINSMNVRIGEIKLDTWRSEPKSFFSTKYVVQDVGKISIFFQIPKIILKKQQRQCILNSTYHNIPVSLKSVKKREFETNTEIEGGKFKLRVNCGNTTYNTANGKWLFPLVKLTFTGENGTSNNGTNDLLRTVTGSGQAEGVSLKIKRENGTHTVKYGADSANMGNAGQFELHKQPTSVGGDQSAEETFKVYYVKDPARGSLTEGKVNAAATFTMSYQ
>NC_014922.1|WP_013527765.1|1739210_1739876_-|type-1-fimbrial-protein
MQKTPKKLTALFHQKSTATCSGANYSGTNYSGSKCFRFHRLALLACVALLDCIVALPAYAYDGRVTFQGEILGDGTCKIETDSQNRTVTLPTVGKANLRLAGQTAAPVPFSITLKECNKVDAGNSALLFNGATAGQPYLPNTASSGKANNVGIQIVKADGAGTPVKVDGSQSDNVKASGTGEEKNDTVIQPRFDYFAHYYATGAATAGDVEATATFQVQYK
>NC_014922.1|WP_013527766.1|1739893_1742407_-|fimbrial-biogenesis-outer-membrane-usher-protein
MKTKNFPLNKIAFACTLLLANPVAWAEDQFDASLWGGGSVLGIDFARFNVKNAVLPGRYEAQIYVNNEEKGESDIIFADNPATGRAELCFTPKLQEMLDLMDEAIVKSPNAEDDTCVFASDAIPQGTFEYQSSEMKLKLELPQALTIRRPRGYIAPSRWQTGTNAAFANYDINYYRSDNPEVKSKSLYVGLRSGVNFGNWALRHNGSFSRFENQSSSGFTDKGKNHYERGDTYLQRDFALLRGNVTVGDFFSTARIGENFGMRGLRIASDDRMLAPSQRGFAPVVRGVANTNAKVSIKQNGYTIYQITVPAGPFVINDLYASGYSGDLTVEIQESDGKVRSFIVPFSNLAPLMRVGHVRYQLAGGRYRIDSRTFDERVLQGVLQYGLTNHLTLNSSLLYTRHYRAGLFGFGLNTPIGAFSADATWSHAEFPLKNVSKNGYSLHSSYSINFNESGTNIALAAYRYSSQDFYTLSDTIGLNRTFRQFSGAYLPEIYRPKNQFQVSLSQSLGNWGNLYLSGQTYNYWEKRGTNTQYQIAYSNSFHILNYSVNLSQSIDKETGKRDNSIYLSLSLPLGDNHSADSGYSRSGNDINQRLGVNGSFGERHQWSYGINASRNNQGYRSYDANLAHNNSIGSYRASYSRDSLKNRSTSLGASGAVVAHKHGITLSQPVGESFAIIHAKDAAGAKVESGANVSLDYFGNAVMPYTSPYEINYIGINPSDAEANVEFEATERQIIPRANSISLVDFRTGKNTMVLFNLTLPNGEPVPMASTAQDSKGAFVGDVVQGGVLFANKLTQPKGELIVKWGERESEQCRFQYQVDLDNAQIQSHDIQCKTAK
>NC_014922.1|WP_013527767.1|1742513_1743212_-|fimbria/pilus-periplasmic-chaperone
MFKKTLLFFTALCAFSANANVIITGTRVIYPAGQKNVIVKLENNDDSAALVQAWIDNGNPNADPKYTKTPFVITPPVTRVEAKSGQSLRITFTGSEPLPDDRESLFYFNLLDIPPKPDAEFLAKHGSFMQIAIRSRLKLFYRPAKLSLDPFDAMKKVVFKATPKGVLVDNQTPYYMNYIGLLHQNKPAKNVKMVAPFSQAVFEAKGVRSGDKLKWVLVNDYGADQEGDAIAQ
>NC_014922.1|WP_041175201.1|1743681_1744347_+|type-1-fimbrial-protein
MEQFIMKKTLLGSLILLAFAGNVQAAANADTKGTVTFFGKVVENTCQVKTDHKNLSVVLNDVGKNSLKDKGNTAMPTPFTITLQNCNPTAANGSANKANKVGLYFYSWENADKENNFTLKNKISTSNDFATMVNIQLMESNGTKEIKVVGKETEDFVHKNATGAGVALTQTHPDNDHISGSTQLTSVTGELPLHFIAQYYSLGSTTAGKVQSSVDFQIAYE
>NC_014922.1|WP_013527769.1|1744559_1745054_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSKTAQIAVVMGSKSDWATMQEATQILDELNVPYHVEVVSAHRTPDKLFEFAENAQKNGYKVIIAGAGGAAHLPGMIAAKTLVPVLGVPVKSSMLSGVDSLYSIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAGWDLELLSRLQSFRESQTHAVLDNPDPRT
>NC_014922.1|WP_013527770.1|1745123_1746212_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MQNSTLYPTVYVLGNGQLGRMLHYAGAPLDIYVEPLAFNAPVFDLPENAIITAEIERWEKTPLTELLGNHKNFVNQHVFGLLADRFTQKSLLDELNLSTSPWCLLKDKTQWNDVFQTVGEKVVVKRRTGGYDGRGQWIISDENKADITDDLFSEVIAEKFIPFDYEVSIVGARFKNGEKRFYPVTHNLQQNGILRYSVVDIAFPQQSAQQKQAEAMLGKIMDKLGYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRTLLDLPTPELQTFAPSVMINLIGTNHNPKWLNTPFAQLHWYGKEVRTGRKVGHINLSHPNKAVIIQQLEKLRTELPEDYQSGLNWVIEKLK
>NC_014922.1|WP_013527771.1|1746351_1747542_+|aspartate/tyrosine/aromatic-aminotransferase
MFEHIKAAPADPILGLGEAFKSETRENKINLGIGVYKDAQGTTPIMRAVKEAEKRLFDKEKTKNYLTIDGIADYNEQTKALLFGKDSEIIKSNRARTVQSLGGTGALRIAAEFIKRQTKAQNVWISTPTWPNHNAIFNAVGMTIREYRYYDAERKALDWEHLLEDLSQASEGDVVLLHGCCHNPTGIDPTPEQWQELAALSAKNGWLPLFDFAYQGLANGLDEDAYGLRAFAANHKELLVASSFSKNFGLYNERVGAFTLVAENAEIASTALTQVKSIIRTLYSNPASHGGATVATVLNDTQLRQEWENELTEMRERIKKMRHLFVQLLKEYGAEQDFSFIMEQNGMFSFSGLTGEQVDRLKEEFAIYAVRSGRINVAGITEDNIRYLCESIVKVL
>NC_014922.1|WP_013527772.1|1747700_1748318_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MLAINNLYIERNGRAIIQDLSFTLEGQKRLFVQGEIGSGKTTLLLALLGFVPVTKGEIKLFGKVCRKEKDFVPFRGTIGICFQNADDQLFGPTVLDDIAFGPLNQNVPREQAYHIAEQQLERLGITGLKDRMVHTLSGGEKNFTALAGVLAMQPKILLLDEPTNGLDRKNTEKLTALLRELSLPILISSHHHGFINELATEIISL
>NC_014922.1|WP_013527773.1|1748319_1748952_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKIHRLFQPHFRLIYLFIWGLIISGLSDLTWLIPFNLLAVSLFFISLQFSQKSFLPYLKRWFALIIFIALMWATLSWQIGENGIELNFQGIELAEKLSLRTHLLLISLWLFLWNINDGVLVQAIGKLPLPEKLIQLFVLTVRYIALLGELRQKMDIAMRARGFRPGLNRRTLYVAAQSVALLLIHALLKAETVQMALKCRGFQFGKKREK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

415205 : 491635

Mannheimia_phage(51.35%)

terminase,capsid,tail,protease,plate,tRNA,head,integrase,portal

attL 456320:456379|attR 491636:491697

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006995391.1\|415205_416924_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_006995390.1\|417008_418868_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.9e-87	37.1
WP_005655473.1\|418869_419175_-	iron donor protein CyaY	NA	NA	NA	NA
WP_006995389.1\|419435_420683_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_005652269.1\|420888_421515_+	response regulator	NA	NA	NA	NA
WP_013527339.1\|421605_422016_-	DUF2489 domain-containing protein	NA	NA	NA	NA
WP_006995388.1\|422019_422580_-	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_006995387.1\|422693_422972_-	hypothetical protein	NA	NA	NA	NA
WP_006995386.1\|423004_423178_-	hypothetical protein	NA	NA	NA	NA
WP_006996628.1\|429183_429738_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_013527340.1\|429913_430951_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	1.2e-33	39.5
WP_006995384.1\|430940_431630_+	ABC transporter permease	NA	NA	NA	NA
WP_005654466.1\|431668_432490_+	MetQ/NlpA family lipoprotein	NA	NA	NA	NA
WP_005672324.1\|432791_433559_-	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_006995381.1\|433588_434167_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013527341.1\|434193_434853_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_013527342.1\|434855_437627_-	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-20	40.0
WP_005661551.1\|437821_438571_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.4e-17	29.5
WP_006995378.1\|438800_440570_+	L-fucose isomerase	NA	NA	NA	NA
WP_013527343.1\|440642_442055_+	L-fuculokinase	NA	NA	NA	NA
WP_005648572.1\|442068_442503_+	L-fucose mutarotase	NA	NA	NA	NA
WP_006995376.1\|442522_443173_+	L-fuculose-phosphate aldolase	NA	NA	NA	NA
WP_005668621.1\|443211_444498_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_005654480.1\|445025_445874_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.1e-33	39.7
WP_006995374.1\|446011_447397_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_006995373.1\|447535_448351_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_005694542.1\|448360_449164_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_006995372.1\|449180_450188_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_006995371.1\|450261_452793_-	class I adenylate cyclase	NA	NA	NA	NA
WP_006995370.1\|453097_454309_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_006995369.1\|454319_455606_+	heme biosynthesis protein HemY	NA	NA	NA	NA
456320:456379	attL	NA	NA	NA	NA
WP_005641196.1\|456880_457891_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	3.5e-120	62.1
WP_041175147.1\|457900_459676_-\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	1.9e-217	65.4
WP_006995363.1\|460103_460748_+	phage repressor protein	D0UIM5	Aggregatibacter_phage	5.3e-29	35.0
WP_006995362.1\|460925_461741_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	1.2e-62	60.7
WP_006995361.1\|461762_462812_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	4.4e-89	51.6
WP_013527346.1\|462823_463474_+\|terminase	terminase	Q19US0	Mannheimia_phage	9.1e-45	45.5
WP_006995358.1\|463766_464273_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	1.3e-33	51.0
WP_005668467.1\|464272_464482_+\|tail	tail protein X	E5G6M9	Salmonella_phage	4.5e-06	40.6
WP_006995357.1\|464483_464705_+	hypothetical protein	NA	NA	NA	NA
WP_005653059.1\|464697_465216_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
WP_006995356.1\|465200_465551_+	hypothetical protein	NA	NA	NA	NA
WP_006995354.1\|465725_465941_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	5.3e-10	46.6
WP_006995353.1\|465937_466408_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	5.6e-28	46.0
WP_013527347.1\|466407_466866_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	2.3e-26	50.4
WP_006995351.1\|466843_467116_-	hypothetical protein	NA	NA	NA	NA
WP_013527348.1\|467185_469921_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.8e-86	36.1
WP_006995349.1\|469997_470165_+	hypothetical protein	NA	NA	NA	NA
WP_006995348.1\|470142_470595_+	hypothetical protein	NA	NA	NA	NA
WP_005668437.1\|470686_471286_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	7.1e-44	66.0
WP_005633786.1\|471287_471626_+	GPW/gp25 family protein	Q19UQ6	Mannheimia_phage	3.4e-19	56.6
WP_006995347.1\|471622_472537_+\|plate	baseplate J/gp47 family protein	Q19UQ5	Mannheimia_phage	1.5e-93	59.2
WP_006995346.1\|472526_473063_+\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	4.5e-50	53.5
WP_013527351.1\|475319_475922_+	hypothetical protein	Q94MX9	Haemophilus_virus	1.2e-94	91.5
WP_013525646.1\|475918_476419_+	hypothetical protein	F6MIM0	Haemophilus_phage	8.5e-51	60.4
WP_041175148.1\|476594_476714_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013527352.1\|476770_477616_+	hypothetical protein	F6MIM2	Haemophilus_phage	5.0e-120	73.2
WP_006995341.1\|478060_479245_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1S6KZY7	Salmonella_phage	6.0e-103	48.7
WP_006995340.1\|479248_479755_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	7.1e-53	59.5
WP_005655095.1\|479823_480123_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.4e-10	40.7
WP_006995339.1\|480122_480269_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
WP_006995337.1\|480436_480598_+	hypothetical protein	NA	NA	NA	NA
WP_006995336.1\|480597_481035_+\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	1.0e-39	56.7
WP_013527353.1\|481034_482228_+	phage late control D family protein	R9QBT3	Mannheimia_phage	1.5e-101	51.0
WP_005668419.1\|482253_482493_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_006995333.1\|482503_483673_-	hypothetical protein	NA	NA	NA	NA
WP_006995332.1\|483682_484372_-	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	1.0e-30	34.9
WP_013527354.1\|484491_484740_+	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	1.4e-06	49.1
WP_005655063.1\|485504_485747_+	hypothetical protein	Q19UN6	Mannheimia_phage	1.2e-21	68.1
WP_041175149.1\|485837_486101_+	hypothetical protein	NA	NA	NA	NA
WP_005689773.1\|486118_486499_+	hypothetical protein	NA	NA	NA	NA
WP_005668404.1\|486502_486745_+	hypothetical protein	NA	NA	NA	NA
WP_005655052.1\|486870_487179_+	hypothetical protein	NA	NA	NA	NA
WP_013527356.1\|487188_489330_+	replication endonuclease	Q94N00	Haemophilus_virus	1.5e-165	42.5
WP_005668397.1\|489393_489585_+	hypothetical protein	NA	NA	NA	NA
WP_005668395.1\|489595_489805_+	hypothetical protein	NA	NA	NA	NA
WP_013527357.1\|489818_490340_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	1.6e-28	41.8
WP_013527358.1\|490579_491635_+\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	2.2e-56	36.2
491636:491697	attR	NA	NA	NA	NA

DBSCAN-SWA_2

832217 : 841097

Mannheimia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005651292.1\|832217_832634_-	hypothetical protein	E5E463	Acinetobacter_phage	1.3e-07	65.2
WP_013525621.1\|833962_834322_-	hypothetical protein	NA	NA	NA	NA
WP_013525620.1\|834318_834555_-	hypothetical protein	NA	NA	NA	NA
WP_013525619.1\|834551_835121_-	hypothetical protein	NA	NA	NA	NA
WP_158305132.1\|835131_835275_-	hypothetical protein	NA	NA	NA	NA
WP_013527462.1\|835399_836503_-	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	7.5e-07	61.9
WP_005668705.1\|836564_836999_-	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	7.5e-19	36.2
WP_013525616.1\|836998_837649_-	hypothetical protein	A0A0M3LP90	Mannheimia_phage	1.2e-84	71.6
WP_013525615.1\|837623_838574_-	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	1.0e-108	68.3
WP_041174891.1\|838586_838880_-	hypothetical protein	NA	NA	NA	NA
WP_013525614.1\|838876_839224_-	hypothetical protein	NA	NA	NA	NA
WP_013527463.1\|839237_839975_-	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	3.1e-113	77.5
WP_013525612.1\|840065_841097_-	HNH endonuclease	D0UIK6	Aggregatibacter_phage	5.2e-42	82.8

DBSCAN-SWA_3

844429 : 882458

Pseudomonas_phage(15.15%)

terminase,capsid,tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013525608.1\|844429_845017_-	recombination protein NinG	A0A2I7RAC0	Vibrio_phage	1.7e-37	48.5
WP_005651114.1\|845109_845526_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.1e-62	84.7
WP_005633909.1\|845562_845787_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_013527465.1\|845783_846425_-	replication P	NA	NA	NA	NA
WP_013525606.1\|846409_847192_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	4.3e-41	45.1
WP_013525605.1\|847193_847427_-	helix-turn-helix domain-containing protein	A0A0M3LR73	Mannheimia_phage	2.3e-14	60.3
WP_005651123.1\|847472_847925_-	hypothetical protein	NA	NA	NA	NA
WP_006995067.1\|847968_848175_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	8.7e-10	48.3
WP_013527466.1\|848308_849277_+	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	9.2e-17	30.5
WP_171034551.1\|849527_849689_+	hypothetical protein	NA	NA	NA	NA
WP_013525603.1\|849699_850026_+	hypothetical protein	NA	NA	NA	NA
WP_013525602.1\|850012_850417_+	M15 family metallopeptidase	W0LI70	Edwardsiella_phage	3.9e-46	68.7
WP_013527467.1\|850413_850803_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_013525600.1\|850777_851008_+	hypothetical protein	NA	NA	NA	NA
WP_012054986.1\|851019_852375_+	ParB N-terminal domain-containing protein	A0A0E3U266	Fusobacterium_phage	1.8e-98	44.8
WP_005692583.1\|852371_852593_-	hypothetical protein	NA	NA	NA	NA
WP_005651145.1\|852650_853019_+	LuxR family transcriptional regulator	A0A0R6PHW5	Moraxella_phage	3.4e-12	39.3
WP_013525599.1\|852999_854349_+\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	5.5e-145	58.2
WP_013525598.1\|854350_855667_+	DUF1073 domain-containing protein	A0A2K9V3H1	Faecalibacterium_phage	1.8e-47	32.0
WP_041174890.1\|855647_856865_+\|capsid	minor capsid protein	A0A2D2W1Z9	Sinorhizobium_phage	2.6e-24	38.0
WP_005692574.1\|856990_858064_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	1.2e-54	40.2
WP_013525596.1\|858076_858496_+	DUF2190 family protein	NA	NA	NA	NA
WP_013525595.1\|858503_859505_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	2.9e-50	36.2
WP_005692571.1\|859507_859696_+	hypothetical protein	NA	NA	NA	NA
WP_013525594.1\|859699_860050_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_013525593.1\|860042_860501_+	hypothetical protein	A0A2I7R754	Vibrio_phage	4.1e-15	34.5
WP_013525592.1\|860500_860860_+	hypothetical protein	NA	NA	NA	NA
WP_013527469.1\|860861_861371_+	hypothetical protein	NA	NA	NA	NA
WP_013525590.1\|861357_862431_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	4.8e-59	41.0
WP_005643344.1\|862476_862902_+	DUF3277 family protein	A0A0A1IUI2	Pseudomonas_phage	2.6e-16	36.9
WP_013525589.1\|862901_863384_+	hypothetical protein	NA	NA	NA	NA
WP_005643340.1\|863419_863572_+	hypothetical protein	NA	NA	NA	NA
WP_013525588.1\|863568_865986_+	tape measure protein	H9EB42	Vibrio_phage	1.6e-33	28.0
WP_013527470.1\|866060_866783_-	hypothetical protein	A6XMM0	Bacillus_virus	5.8e-24	46.4
WP_005688900.1\|866944_867526_+	hypothetical protein	I3PGV3	Xanthomonas_phage	5.7e-06	27.7
WP_005643334.1\|867522_867837_+	hypothetical protein	NA	NA	NA	NA
WP_005692555.1\|867833_868796_+	hypothetical protein	E5AGC0	Erwinia_phage	5.9e-32	29.9
WP_005692552.1\|868792_869464_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	9.8e-18	33.5
WP_005651178.1\|869460_869826_+	hypothetical protein	A0A1J0MEY0	Pectobacterium_phage	1.8e-10	34.5
WP_005651180.1\|869818_871255_+\|plate	baseplate J/gp47 family protein	A0A0N9SH53	Pseudomonas_phage	4.8e-46	28.4
WP_012054979.1\|871263_871878_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.0e-21	37.4
WP_013527471.1\|871887_874257_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	6.4e-213	59.8
WP_013525580.1\|874268_874871_+	hypothetical protein	Q94MX9	Haemophilus_virus	5.0e-98	94.5
WP_013525579.1\|874867_875326_+	hypothetical protein	F6MIM0	Haemophilus_phage	4.9e-45	55.8
WP_005691741.1\|875973_876699_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_005662648.1\|876751_877204_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_005656383.1\|877271_878486_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
WP_013527472.1\|878545_878929_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.4e-53	80.6
WP_013527473.1\|878982_879306_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.4e-24	46.7
WP_013527474.1\|879318_879843_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_005649159.1\|879893_880580_+	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_013527475.1\|880598_882458_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.0e-109	42.3

DBSCAN-SWA_4

1379296 : 1411835

Mannheimia_phage(40.91%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005652248.1\|1379296_1379476_+	hypothetical protein	Q19US2	Mannheimia_phage	1.8e-11	62.1
WP_013527619.1\|1379535_1379970_-	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	1.3e-18	36.2
WP_041175171.1\|1379969_1380620_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	3.8e-83	70.2
WP_011272494.1\|1380594_1381515_-	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	4.8e-116	71.5
WP_041175172.1\|1381527_1381821_-	hypothetical protein	NA	NA	NA	NA
WP_013527621.1\|1381817_1382162_-	hypothetical protein	NA	NA	NA	NA
WP_013527622.1\|1382212_1383238_-	HNH endonuclease	A0A0M3LQ72	Mannheimia_phage	1.7e-24	47.0
WP_005688811.1\|1383227_1383479_-	hypothetical protein	NA	NA	NA	NA
WP_005687157.1\|1383660_1383927_+	hypothetical protein	NA	NA	NA	NA
WP_083304313.1\|1383912_1384206_-	hypothetical protein	NA	NA	NA	NA
WP_041175173.1\|1384478_1384700_-	hypothetical protein	NA	NA	NA	NA
WP_085024748.1\|1384714_1384885_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_013527624.1\|1385238_1385658_-	hypothetical protein	NA	NA	NA	NA
WP_013527625.1\|1385647_1386121_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_013527626.1\|1386132_1386387_-	type II toxin-antitoxin system HicA family toxin	K7PH44	Enterobacterial_phage	1.4e-09	41.7
WP_013527627.1\|1386544_1387204_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	1.3e-38	43.0
WP_041175174.1\|1387308_1387491_+	Cro/Cl family transcriptional regulator	A5VW97	Enterobacteria_phage	4.1e-11	60.0
WP_013527628.1\|1387545_1387986_+	hypothetical protein	NA	NA	NA	NA
WP_013527629.1\|1388034_1388709_+	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	3.4e-79	67.9
WP_013527630.1\|1388705_1389452_+	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	2.3e-68	66.0
WP_013527631.1\|1389448_1390096_+	replication P	D0UIL4	Aggregatibacter_phage	7.0e-37	47.6
WP_013527632.1\|1390092_1390674_+	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	2.2e-50	56.0
WP_013527633.1\|1390670_1391594_+	N-6 DNA methylase	A0A0M3LQ47	Mannheimia_phage	1.0e-97	58.2
WP_013527634.1\|1391594_1392020_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	2.8e-58	75.9
WP_041175226.1\|1392592_1392883_+	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	7.6e-44	88.0
WP_013527636.1\|1392879_1393245_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	1.7e-40	61.7
WP_013527637.1\|1393237_1393963_+	hypothetical protein	NA	NA	NA	NA
WP_013527638.1\|1394047_1394743_+	hypothetical protein	NA	NA	NA	NA
WP_041175175.1\|1395106_1395976_+	antirepressor	D0UIK6	Aggregatibacter_phage	7.0e-109	68.3
WP_005643389.1\|1396156_1396330_+	hypothetical protein	D0UIH9	Aggregatibacter_phage	8.9e-08	53.7
WP_005650535.1\|1396523_1396880_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_013527639.1\|1396848_1397451_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	2.3e-58	55.4
WP_041175176.1\|1397443_1397767_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_080474426.1\|1397672_1397954_+	hypothetical protein	NA	NA	NA	NA
WP_013527640.1\|1398041_1398794_+	hypothetical protein	A0A2R2Z334	Escherichia_phage	4.8e-13	25.4
WP_041175177.1\|1398783_1400331_+	hypothetical protein	A0A1B1IVN4	uncultured_Mediterranean_phage	1.3e-97	42.9
WP_114892208.1\|1400453_1402529_+	hypothetical protein	NA	NA	NA	NA
WP_013527643.1\|1402586_1411835_+	hypothetical protein	A0A222YY44	Escherichia_phage	5.7e-31	29.8

DBSCAN-SWA_5

1616944 : 1682542

Haemophilus_phage(40.74%)

terminase,plate,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013527718.1\|1616944_1617823_+\|holin	choline transport protein LicB	NA	NA	NA	NA
WP_012054405.1\|1617819_1618521_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_013527719.1\|1618520_1619318_+	LicD family protein	A0A1V0SD50	Indivirus	9.3e-07	35.5
WP_013527720.1\|1619355_1621203_-	signal peptide peptidase SppA	NA	NA	NA	NA
WP_013527721.1\|1621300_1621855_+	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_013527722.1\|1621901_1622456_-	molecular chaperone	NA	NA	NA	NA
WP_013527723.1\|1622448_1623063_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_013527724.1\|1623183_1624428_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_005656849.1\|1624712_1625153_+	LexA family transcriptional regulator	NA	NA	NA	NA
WP_165590136.1\|1625222_1626290_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	4.5e-81	46.0
WP_013527725.1\|1626528_1627779_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_013527726.1\|1627778_1628462_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	7.4e-37	40.1
WP_013527727.1\|1628543_1629185_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_013527728.1\|1629194_1629977_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_006996100.1\|1629964_1630612_-	DUF452 family protein	NA	NA	NA	NA
WP_005688496.1\|1630621_1631764_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_013527729.1\|1631772_1633062_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	7.7e-19	29.6
WP_013527730.1\|1633076_1634243_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_013527731.1\|1634242_1635190_-	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	5.8e-24	28.1
WP_013527732.1\|1635249_1636104_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.7e-46	39.9
WP_006996106.1\|1636118_1636922_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_006996107.1\|1636921_1637800_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013527733.1\|1637799_1638240_-	RDD family protein	NA	NA	NA	NA
WP_032826329.1\|1638292_1639375_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.3e-08	42.2
WP_013527734.1\|1639653_1640421_-	sel1 repeat family protein	NA	NA	NA	NA
WP_006996114.1\|1640619_1641156_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_032826285.1\|1641222_1641351_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013527735.1\|1641655_1642636_+	phosphotransferase family protein	NA	NA	NA	NA
WP_013527718.1\|1642635_1643514_+\|holin	choline transport protein LicB	NA	NA	NA	NA
WP_012054405.1\|1643510_1644212_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_013527736.1\|1644211_1645009_+\|holin	phosphorylcholine transferase LicD	A0A1V0SD50	Indivirus	1.0e-05	46.7
WP_013527737.1\|1645383_1645800_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	1.9e-51	71.0
WP_013527738.1\|1645942_1646659_-	hypothetical protein	A0A0M3LSH7	Mannheimia_phage	6.9e-70	57.7
WP_011961987.1\|1646670_1646904_-	DUF935 family protein	B7SDN1	Haemophilus_phage	2.1e-20	68.9
WP_006996123.1\|1646903_1647374_+	hypothetical protein	Q94N00	Haemophilus_virus	6.6e-21	39.0
WP_006996122.1\|1647428_1647587_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	3.4e-14	81.4
WP_013527740.1\|1649094_1649586_-	hypothetical protein	F6MIM0	Haemophilus_phage	9.9e-52	62.3
WP_005661624.1\|1649582_1650185_-	hypothetical protein	Q94MX9	Haemophilus_virus	2.6e-94	91.0
WP_013527741.1\|1650196_1652440_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	2.3e-220	65.5
WP_006996360.1\|1652449_1653025_-	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	2.4e-89	80.1
WP_006996361.1\|1653024_1654167_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	6.7e-184	86.3
WP_006996362.1\|1654262_1654616_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	2.5e-57	89.6
WP_006996363.1\|1654612_1655257_-	hypothetical protein	Q7Y5S7	Haemophilus_phage	1.8e-85	85.0
WP_006996364.1\|1655253_1656138_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.9e-141	89.5
WP_013527742.1\|1656392_1656701_-	hypothetical protein	Q7Y5S9	Haemophilus_phage	7.8e-47	82.4
WP_006996366.1\|1656706_1657489_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.0e-82	65.5
WP_006996369.1\|1659733_1660144_-	hypothetical protein	Q776V6	Haemophilus_phage	5.9e-50	70.8
WP_006996370.1\|1660143_1660575_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.9e-71	93.0
WP_006996371.1\|1660584_1660743_-	hypothetical protein	NA	NA	NA	NA
WP_006996372.1\|1660819_1662328_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	4.6e-249	86.9
WP_013525927.1\|1662332_1662695_-	hypothetical protein	Q7Y5T6	Haemophilus_phage	6.6e-45	73.9
WP_006996374.1\|1662759_1663131_-	hypothetical protein	Q776V7	Haemophilus_phage	6.8e-45	70.7
WP_006996375.1\|1663127_1663574_-	hypothetical protein	Q7Y5T8	Haemophilus_phage	6.7e-55	72.3
WP_006996376.1\|1663574_1663937_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.5e-33	67.3
WP_006996377.1\|1663946_1664861_-	DUF2184 domain-containing protein	Q7Y5U0	Haemophilus_phage	1.7e-150	89.5
WP_006996378.1\|1664870_1665311_-	hypothetical protein	D0UIJ1	Aggregatibacter_phage	2.3e-47	71.1
WP_006996379.1\|1665323_1666424_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	4.4e-140	87.0
WP_006996380.1\|1666489_1666846_-	DUF2513 domain-containing protein	A0A1W6JNL0	Staphylococcus_phage	7.8e-06	31.7
WP_006996384.1\|1669919_1671263_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	3.1e-124	53.7
WP_005693952.1\|1671249_1671765_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	5.6e-21	40.9
WP_006996385.1\|1671841_1672093_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	6.4e-15	50.6
WP_006996386.1\|1672076_1672424_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	4.4e-22	56.1
WP_013527746.1\|1672425_1672707_-	hypothetical protein	Q776X1	Haemophilus_phage	2.5e-31	74.4
WP_006996388.1\|1672618_1672942_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	4.5e-21	56.5
WP_006996389.1\|1672934_1673537_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	5.6e-57	53.9
WP_005650535.1\|1673505_1673862_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_006996390.1\|1674077_1674947_-	phage repressor protein/antirepressor Ant	D0UIK6	Aggregatibacter_phage	4.6e-108	66.9
WP_005687174.1\|1675544_1675727_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	1.2e-05	45.5
WP_006996391.1\|1675771_1676221_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.8e-23	38.3
WP_005653907.1\|1676252_1676435_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_006996392.1\|1676535_1676904_-	hypothetical protein	Q7Y5V5	Haemophilus_phage	6.1e-38	63.4
WP_006996393.1\|1676905_1677454_-	recombination protein NinG	D0UIK8	Aggregatibacter_phage	1.8e-57	62.6
WP_005656663.1\|1677542_1677962_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.1e-57	76.1
WP_005633909.1\|1677998_1678223_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_013527748.1\|1678219_1678855_-	replication P	NA	NA	NA	NA
WP_013527749.1\|1678839_1679556_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	2.4e-62	62.0
WP_006996396.1\|1679552_1680221_-	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	2.0e-55	52.1
WP_006996397.1\|1680268_1680565_-	hypothetical protein	Q7Y5W3	Haemophilus_phage	3.8e-30	69.4
WP_005687166.1\|1680585_1680792_-	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.9e-17	67.7
WP_006996398.1\|1680922_1681579_+	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.6e-65	57.9
WP_005692469.1\|1681696_1682542_+	DNA damage-inducible protein DnaD	F5A3D6	Riemerella_phage	9.4e-50	41.9

DBSCAN-SWA_6

1686007 : 1692711

Aggregatibacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041175197.1\|1686007_1686859_+	ORF6C domain-containing protein	D0UIK6	Aggregatibacter_phage	1.2e-55	42.5
WP_041175198.1\|1687063_1687708_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	1.5e-84	71.4
WP_013525952.1\|1687707_1688142_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.3e-18	35.1
WP_005652248.1\|1688201_1688381_-	hypothetical protein	Q19US2	Mannheimia_phage	1.8e-11	62.1
WP_041174939.1\|1688701_1688938_+	hypothetical protein	NA	NA	NA	NA
WP_041175199.1\|1688934_1689285_+	hypothetical protein	NA	NA	NA	NA
WP_005684834.1\|1689428_1689869_+	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	1.9e-49	65.8
WP_006996405.1\|1689855_1690209_+	hypothetical protein	NA	NA	NA	NA
WP_006996406.1\|1690412_1690586_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_013527750.1\|1691856_1692711_+	ORF6C domain-containing protein	D0UIK6	Aggregatibacter_phage	2.6e-55	42.4

DBSCAN-SWA_7

1803717 : 1812231

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006996495.1\|1803717_1804401_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.6e-54	50.2
WP_005663812.1\|1804393_1804819_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.3e-20	42.7
WP_086935178.1\|1804819_1805455_+	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	3.8e-11	35.2
WP_041175009.1\|1806069_1808250_+	DNA helicase II	A7KV33	Bacillus_phage	8.7e-116	37.6
WP_006996497.1\|1808339_1809341_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013527806.1\|1809355_1810243_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013527807.1\|1810252_1811245_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.6e-16	30.2
WP_013527808.1\|1811247_1812231_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-17	27.3

DBSCAN-SWA_8

1953338 : 1971643

Haemophilus_phage(66.67%)

terminase,capsid,protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013527853.1\|1953338_1953770_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	7.1e-38	61.6
WP_013527854.1\|1953779_1954085_-	hypothetical protein	B7SDP3	Haemophilus_phage	1.1e-19	51.0
WP_013527855.1\|1954147_1955071_-\|head	Mu-like prophage major head subunit gpT family protein	B7SDP1	Haemophilus_phage	7.4e-133	74.3
WP_086935179.1\|1955070_1955877_-\|protease	phage protease	B7SDN9	Haemophilus_phage	1.1e-44	43.1
WP_013526157.1\|1955764_1956118_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	3.1e-23	67.9
WP_013527857.1\|1956260_1957577_-\|capsid	minor capsid protein	A0A0M3LSH7	Mannheimia_phage	1.6e-168	67.7
WP_013527858.1\|1957560_1959183_-	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	2.9e-201	68.0
WP_013527859.1\|1959262_1960903_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	9.1e-251	78.5
WP_173341730.1\|1960892_1961036_-	hypothetical protein	NA	NA	NA	NA
WP_013527860.1\|1961032_1961536_-	DUF1804 family protein	F6MIK6	Haemophilus_phage	4.1e-45	51.8
WP_006995441.1\|1961537_1961804_-	hypothetical protein	NA	NA	NA	NA
WP_005684166.1\|1961803_1962061_-	hypothetical protein	NA	NA	NA	NA
WP_013527861.1\|1962184_1962442_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_041174960.1\|1962441_1962732_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	3.3e-15	61.4
WP_171034543.1\|1962728_1962896_-	hypothetical protein	NA	NA	NA	NA
WP_013527862.1\|1962885_1963389_-	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	5.8e-55	64.4
WP_006995448.1\|1963470_1963899_-	hypothetical protein	F6MIJ8	Haemophilus_phage	3.3e-27	42.3
WP_005641522.1\|1964004_1964223_-	hypothetical protein	NA	NA	NA	NA
WP_013527863.1\|1964233_1964875_-	antA/AntB antirepressor family protein	A0A059T6E7	Listeria_phage	2.5e-10	43.2
WP_006996626.1\|1965347_1965551_-	KilA-N domain-containing protein	NA	NA	NA	NA
WP_006996625.1\|1965577_1965976_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	3.4e-18	42.9
WP_006996624.1\|1966216_1966465_-	hypothetical protein	NA	NA	NA	NA
WP_006996623.1\|1966469_1966643_-	hypothetical protein	NA	NA	NA	NA
WP_006996622.1\|1966639_1966804_-	hypothetical protein	NA	NA	NA	NA
WP_006996621.1\|1966814_1967012_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_013526168.1\|1967198_1967816_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	6.8e-66	58.8
WP_005647090.1\|1967816_1968008_-	HTH domain-containing protein	F6MII8	Haemophilus_phage	9.5e-11	57.6
WP_013527864.1\|1968016_1968313_-	hypothetical protein	NA	NA	NA	NA
WP_013527865.1\|1968324_1969206_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	6.7e-91	60.4
WP_006996357.1\|1969257_1969674_-	hypothetical protein	NA	NA	NA	NA
WP_013527866.1\|1969666_1971643_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A0M3LPN5	Mannheimia_phage	3.4e-191	53.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage