CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_015182	Acidiphilium multivorum AIU301 plasmid pACMV8, complete sequence	0 crisprs	NA	0
NC_015179	Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence	0 crisprs	NA	0
NC_015178	Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence	0 crisprs	PrimPol,csa3	4
NC_015186	Acidiphilium multivorum AIU301, complete genome	0 crisprs	csa3,cas3,DEDDh	9
NC_015180	Acidiphilium multivorum AIU301 plasmid pACMV5, complete sequence	0 crisprs	NA	0
NC_015181	Acidiphilium multivorum AIU301 plasmid pACMV6, complete sequence	0 crisprs	NA	0
NC_015188	Acidiphilium multivorum AIU301 plasmid pACMV4, complete sequence	0 crisprs	NA	1
NC_015187	Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence	0 crisprs	NA	0
NC_015189	Acidiphilium multivorum AIU301 plasmid pACMV7, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13653 : 22377

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013641281.1\|13653_16497_+	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	1.5e-11	28.2
WP_013641282.1\|16493_17099_+	hypothetical protein	NA	NA	NA	NA
WP_013641283.1\|17272_18154_+	ABC transporter permease	NA	NA	NA	NA
WP_013641284.1\|18158_18986_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-08	25.7
WP_081479299.1\|18994_20041_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	3.0e-90	49.1
WP_013641286.1\|20037_20919_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.5e-82	55.0
WP_013641287.1\|20915_21470_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-35	48.1
WP_013641288.1\|21471_22377_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.5e-21	34.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015178

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3008 : 44351

Bacillus_phage(28.57%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013634862.1\|3008_4136_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013634863.1\|4609_5725_+	hypothetical protein	NA	NA	NA	NA
WP_013634864.1\|5830_7021_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_154653560.1\|7876_9202_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013634867.1\|9681_10242_+	heme NO-binding domain-containing protein	NA	NA	NA	NA
WP_013634868.1\|10247_12110_+	EAL domain-containing protein	G3MA91	Bacillus_virus	3.2e-10	31.7
WP_007424934.1\|13413_13650_-	hypothetical protein	NA	NA	NA	NA
WP_007424933.1\|13655_13934_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_007421341.1\|14935_15952_+\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_013634871.1\|16115_16937_+	response regulator transcription factor	NA	NA	NA	NA
WP_007424852.1\|16998_17520_-	hypothetical protein	NA	NA	NA	NA
WP_138919265.1\|17516_17990_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_013634873.1\|18175_19816_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-41	28.7
WP_138919264.1\|19812_20325_-	hypothetical protein	NA	NA	NA	NA
WP_007424855.1\|20509_20923_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007424858.1\|22783_25222_+	DEAD/DEAH box helicase family protein	A0A2K9R7J3	Dishui_lake_phycodnavirus	2.0e-28	28.6
WP_013634877.1\|25401_25737_+	hypothetical protein	NA	NA	NA	NA
WP_013634878.1\|25736_25982_+	HipA N-terminal domain-containing protein	NA	NA	NA	NA
WP_013634879.1\|25972_27106_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_154653554.1\|27226_28234_+	HipA domain-containing protein	NA	NA	NA	NA
WP_007424861.1\|28299_28539_-	hypothetical protein	NA	NA	NA	NA
WP_081479275.1\|28595_28976_+	NAD-binding protein	NA	NA	NA	NA
WP_013634882.1\|29621_30344_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_013634884.1\|31193_32234_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013634886.1\|33936_34614_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-33	36.4
WP_013634887.1\|34642_35986_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	4.2e-28	29.4
WP_148361021.1\|36187_37459_+	TolC family protein	NA	NA	NA	NA
WP_013634889.1\|37458_38385_+	hypothetical protein	NA	NA	NA	NA
WP_013634890.1\|38394_41496_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.2e-37	22.0
WP_081479277.1\|41573_42962_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_013634892.1\|43079_44351_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.2e-101	50.5

DBSCAN-SWA_2

75084 : 122325

Acidithiobacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013634915.1\|75084_76113_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_013634916.1\|76399_77107_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013634917.1\|77232_77514_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	46.2
WP_148360965.1\|77534_77726_+	hypothetical protein	NA	NA	NA	NA
WP_013634919.1\|77763_78270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013634920.1\|78266_78557_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_081479279.1\|78782_79019_+	recombinase family protein	NA	NA	NA	NA
WP_013634879.1\|78951_80085_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_013634921.1\|80077_80569_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.2e-35	52.9
WP_013634879.1\|82047_83181_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_013634922.1\|83255_83393_+	hypothetical protein	NA	NA	NA	NA
WP_013634924.1\|83661_83937_+\|transposase	transposase	NA	NA	NA	NA
WP_013634925.1\|83902_85036_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_041665618.1\|85075_86209_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013634927.1\|86242_87301_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013634928.1\|87305_88118_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_013634929.1\|88117_89014_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_013634930.1\|89017_90889_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.5e-19	23.8
WP_013634931.1\|90990_91998_+	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_013634932.1\|91994_93431_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_085947348.1\|93437_94259_+	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA	NA	NA	NA
WP_013634934.1\|94258_95230_+	hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.7e-18	28.1
WP_148361060.1\|96013_96817_+	SIS domain-containing protein	NA	NA	NA	NA
WP_013634938.1\|97250_98162_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_013634939.1\|98158_98971_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.7e-11	27.3
WP_160321861.1\|99033_99177_-	hypothetical protein	NA	NA	NA	NA
WP_013634941.1\|99498_100572_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013634942.1\|100701_101610_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013634943.1\|101611_102622_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013634944.1\|102630_103419_+	TIM barrel protein	NA	NA	NA	NA
WP_013640659.1\|103582_104545_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013634946.1\|104625_105693_+	ABC transporter permease	NA	NA	NA	NA
WP_007421524.1\|105694_106498_+	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-11	27.9
WP_013634947.1\|106566_108477_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_013634948.1\|108473_110312_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	E4WLQ6	Ostreococcus_tauri_virus	1.5e-20	23.1
WP_007421521.1\|110343_111138_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_013634949.1\|111372_113052_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013634950.1\|113270_113492_-	hypothetical protein	NA	NA	NA	NA
WP_013634951.1\|113494_115102_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.4e-108	41.6
WP_013634952.1\|115360_116377_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-07	29.6
WP_013634953.1\|116520_116868_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.1e-28	54.2
WP_013634954.1\|116864_117290_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	6.0e-05	37.0
WP_013634956.1\|118523_119279_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	48.1
WP_158320272.1\|119290_119761_-	hypothetical protein	K4I413	Acidithiobacillus_phage	3.0e-29	44.0
WP_013634958.1\|119819_121055_-\|transposase	IS110 family transposase	A0A1B1P7S0	Bacillus_phage	2.1e-05	46.2
WP_158320273.1\|121281_122325_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	8.2e-96	52.7

DBSCAN-SWA_3

133576 : 192491

Cronobacter_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013634972.1\|133576_134923_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_013634973.1\|135209_136223_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013634972.1\|136727_138074_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_039887465.1\|138661_138916_-	hypothetical protein	NA	NA	NA	NA
WP_013634976.1\|139116_139830_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_013634977.1\|139810_140176_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_013634978.1\|140179_140512_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_041665626.1\|140501_142895_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_013634980.1\|142904_143663_+	type IV secretion system protein	NA	NA	NA	NA
WP_013634981.1\|143892_144780_+	type IV secretion system protein	NA	NA	NA	NA
WP_138919288.1\|144818_144962_+	type IV secretion system protein VirB7	NA	NA	NA	NA
WP_013634982.1\|144958_145660_+	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_011930793.1\|145656_146547_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_011930794.1\|146536_147673_+	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_013634983.1\|147669_147960_+	hypothetical protein	NA	NA	NA	NA
WP_013634984.1\|148010_149744_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_011930570.1\|150017_151058_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011930796.1\|151296_152364_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_011930797.1\|152363_154184_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_011930798.1\|154311_154794_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011930799.1\|154859_155912_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011930800.1\|155908_157078_+	amidohydrolase	NA	NA	NA	NA
WP_011930801.1\|157074_158388_+	Zn-dependent hydrolase	NA	NA	NA	NA
WP_011930802.1\|158484_159741_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.1e-83	44.3
WP_011930803.1\|159746_160136_-	hypothetical protein	NA	NA	NA	NA
WP_011930804.1\|160180_160891_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	1.6e-34	38.4
WP_013634985.1\|161123_161723_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_007421341.1\|161750_162767_-\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_007421341.1\|163082_164099_-\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_013634986.1\|164491_165166_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_011930806.1\|165393_167589_-	ATP-dependent RecD-like DNA helicase	A0A218KCE8	Bacillus_phage	3.1e-52	29.2
WP_013634987.1\|167922_173028_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_011930808.1\|173021_173360_-	hypothetical protein	NA	NA	NA	NA
WP_049796646.1\|173623_174178_+	hypothetical protein	NA	NA	NA	NA
WP_013634989.1\|174187_175078_+	hypothetical protein	NA	NA	NA	NA
WP_013634990.1\|175293_175779_+	hypothetical protein	NA	NA	NA	NA
WP_013634991.1\|175783_176188_+	hypothetical protein	NA	NA	NA	NA
WP_013634992.1\|176777_177353_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_013634994.1\|178165_179215_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013634996.1\|179883_181110_+	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_013634997.1\|181124_183569_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013634998.1\|183568_183919_+	nitrite reductase small subunit NirD	NA	NA	NA	NA
WP_013634999.1\|183915_186501_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_013635000.1\|186478_187264_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013635001.1\|187232_187817_-	siroheme synthase	NA	NA	NA	NA
WP_013635002.1\|188246_188534_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	4.0e-13	41.6
WP_041665735.1\|188545_188815_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	1.0e-13	39.3
WP_013634879.1\|188889_190023_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_013635004.1\|190228_190798_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.1e-22	38.7
WP_013635006.1\|191123_192491_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	5.8e-41	42.4

DBSCAN-SWA_4

203539 : 261462

Thermus_phage(13.33%)

integrase,transposase

attL 223689:223748|attR 257140:257262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013635019.1\|203539_204475_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.5e-27	33.9
WP_081479286.1\|205740_206343_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_148361049.1\|206731_207112_+	hypothetical protein	NA	NA	NA	NA
WP_007421341.1\|207264_208281_-\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_013635023.1\|208441_209131_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_013635024.1\|209589_209970_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	2.3e-08	54.7
WP_013635025.1\|209966_210197_-	hypothetical protein	NA	NA	NA	NA
WP_013635026.1\|210423_211812_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013635027.1\|211811_213182_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_148361037.1\|213297_214029_+	hypothetical protein	NA	NA	NA	NA
WP_082088294.1\|214625_216122_+	recombinase family protein	NA	NA	NA	NA
WP_041665639.1\|216312_216999_+	hypothetical protein	NA	NA	NA	NA
WP_013635032.1\|217552_218206_-	carbohydrate porin	NA	NA	NA	NA
WP_013635035.1\|219766_220576_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-38	37.7
WP_081479289.1\|220572_222126_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013635038.1\|222711_222921_-	hypothetical protein	NA	NA	NA	NA
223689:223748	attL	NA	NA	NA	NA
WP_011930445.1\|223811_225023_+\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	3.8e-12	31.7
WP_011930444.1\|225019_225961_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	7.1e-06	24.8
WP_011930443.1\|225957_226950_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	9.1e-12	29.2
WP_154653557.1\|227042_227189_-	hypothetical protein	NA	NA	NA	NA
WP_013635040.1\|227201_227483_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_013635041.1\|227469_227733_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_013635042.1\|228271_229159_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013635043.1\|229288_230968_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_048858261.1\|231322_232114_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_013635045.1\|232110_233316_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_013635046.1\|233340_233649_+	hypothetical protein	NA	NA	NA	NA
WP_154653558.1\|235808_236414_-	cytosine permease	NA	NA	NA	NA
WP_007421341.1\|236477_237494_+\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_172637355.1\|237448_238399_-	cytosine permease	NA	NA	NA	NA
WP_013635051.1\|238446_238764_-	NIPSNAP family protein	NA	NA	NA	NA
WP_013635052.1\|238773_240246_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_081479291.1\|240242_240986_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_013635054.1\|241083_242118_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_148361008.1\|242741_243680_-	flavin reductase	NA	NA	NA	NA
WP_049796648.1\|243676_244564_-	alpha/beta fold hydrolase	A0A0A7RWQ4	Mycobacterium_phage	1.4e-08	35.9
WP_013635058.1\|244493_245081_-	amino acid synthesis family protein	NA	NA	NA	NA
WP_013635059.1\|245227_245938_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013635060.1\|246244_247597_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	4.4e-41	43.2
WP_013635061.1\|247627_248311_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.4e-35	39.9
WP_081479285.1\|248396_248537_+\|integrase	integrase catalytic subunit	NA	NA	NA	NA
WP_013635064.1\|249088_249643_-	hypothetical protein	NA	NA	NA	NA
WP_013635065.1\|249678_249939_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_013635066.1\|250103_250586_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_148361029.1\|250739_251384_+	hypothetical protein	NA	NA	NA	NA
WP_041665651.1\|251433_251640_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_007424918.1\|252137_252428_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013635068.1\|252430_252604_-	hypothetical protein	NA	NA	NA	NA
WP_013635069.1\|252741_252960_-	hypothetical protein	NA	NA	NA	NA
WP_013635070.1\|253395_253935_-	hypothetical protein	A0A1B1IRD0	uncultured_Mediterranean_phage	7.1e-11	42.5
WP_011930443.1\|253937_254930_-\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	9.1e-12	29.2
WP_011930444.1\|254926_255868_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	7.1e-06	24.8
WP_011930445.1\|255864_257076_-\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	3.8e-12	31.7
WP_154653559.1\|257135_257861_-	DUF1738 domain-containing protein	A0A1B1IWW8	uncultured_Mediterranean_phage	5.3e-09	28.2
257140:257262	attR	NA	NA	NA	NA
WP_013635072.1\|257817_258006_-	hypothetical protein	NA	NA	NA	NA
WP_013635073.1\|258220_258424_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_013635074.1\|258495_261462_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.6e-213	41.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_015186

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43269 : 67810

uncultured_Caudovirales_phage(33.33%)

integrase,transposase

attL 31651:31667|attR 70207:70223

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
31651:31667	attL	NA	NA	NA	NA
WP_013639139.1\|43269_44481_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.1e-14	24.6
WP_158320266.1\|45124_45925_+	YqcI/YcgG family protein	NA	NA	NA	NA
WP_013639141.1\|45926_46574_+	LysE family translocator	NA	NA	NA	NA
WP_013639142.1\|46575_47943_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	4.4e-41	43.2
WP_013639144.1\|49296_50796_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013639145.1\|50792_51620_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.6e-41	38.5
WP_011930570.1\|52331_53372_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013639147.1\|54083_56573_+	hypothetical protein	NA	NA	NA	NA
WP_148361010.1\|56834_58181_+	MFS transporter	NA	NA	NA	NA
WP_052944955.1\|58349_59009_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081479211.1\|59034_60312_-	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_082088290.1\|61288_62446_+	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_148361011.1\|62498_63710_-	hypothetical protein	NA	NA	NA	NA
WP_011930570.1\|64762_65803_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013639153.1\|66076_67810_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
70207:70223	attR	NA	NA	NA	NA

DBSCAN-SWA_2

299394 : 360333

Streptococcus_phage(18.18%)

integrase,transposase

attL 343637:343655|attR 368497:368515

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013635054.1\|299394_300429_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_148361012.1\|300968_301199_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_007422159.1\|301842_302157_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_011941373.1\|302172_302442_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_007422157.1\|302504_303503_+	GTPase ObgE	NA	NA	NA	NA
WP_013639268.1\|303499_304651_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.0e-51	37.6
WP_013639269.1\|304666_305773_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_138919160.1\|305894_306428_-	Cupredoxin	NA	NA	NA	NA
WP_011941376.1\|306507_307296_-	arginyltransferase	NA	NA	NA	NA
WP_011941377.1\|307292_307787_-	RDD family protein	NA	NA	NA	NA
WP_007422151.1\|307945_308878_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.6e-42	33.2
WP_007422150.1\|308905_309526_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_007422149.1\|309525_310110_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_011941378.1\|310156_311320_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_013639271.1\|311391_312561_-	amidase	NA	NA	NA	NA
WP_007422146.1\|312667_313618_+	hypothetical protein	NA	NA	NA	NA
WP_007422145.1\|313614_314469_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013639272.1\|314478_314784_-	hypothetical protein	NA	NA	NA	NA
WP_007422143.1\|314820_316908_-	elongation factor G	E4ZFJ7	Streptococcus_phage	6.3e-63	27.9
WP_013639273.1\|317119_317410_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_148360930.1\|317456_318686_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.2e-42	37.1
WP_007422140.1\|318855_319614_+	signal peptidase I	NA	NA	NA	NA
WP_013639275.1\|319610_320276_+	ribonuclease III	A0A1C9C5A7	Heterosigma_akashiwo_virus	1.5e-18	36.6
WP_013639276.1\|320272_321160_+	GTPase Era	NA	NA	NA	NA
WP_011941385.1\|321198_322317_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_013639277.1\|322327_323539_-	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA
WP_013639278.1\|323641_325345_-	dicarboxylate--CoA ligase PimA	A0A2H4PQM9	Staphylococcus_phage	1.6e-27	29.0
WP_013639279.1\|325341_327438_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_013639280.1\|327536_328535_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013639281.1\|328534_329908_-	glycosyltransferase family protein	D6PFH9	uncultured_phage	3.7e-11	25.3
WP_013639282.1\|329904_331785_-	sulfotransferase family protein	NA	NA	NA	NA
WP_011941392.1\|331916_332873_+	membrane protein	NA	NA	NA	NA
WP_013639283.1\|332904_333861_+	nitronate monooxygenase	NA	NA	NA	NA
WP_013639284.1\|333868_334534_-	glutathione S-transferase	NA	NA	NA	NA
WP_011941394.1\|334530_335358_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_013639285.1\|335406_336303_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_011941396.1\|336299_337325_+	glycosyltransferase	NA	NA	NA	NA
WP_013639286.1\|337324_339070_+	asparagine synthase (glutamine-hydrolyzing)	R4TIC1	Phaeocystis_globosa_virus	1.4e-23	25.7
WP_013639287.1\|339066_340395_+	dihydroorotase	NA	NA	NA	NA
WP_011941399.1\|341048_341639_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_007421756.1\|341635_341950_-	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	7.8e-10	42.7
WP_013639288.1\|342031_342994_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_013639289.1\|342999_344073_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
343637:343655	attL	NA	NA	NA	NA
WP_011941402.1\|344229_344433_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_048857876.1\|344588_345155_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_007421753.1\|345192_345690_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_013639291.1\|345694_347284_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_013639292.1\|347345_348824_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011941406.1\|349071_350295_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	3.0e-105	51.0
WP_011941407.1\|350291_350930_+	hypothetical protein	NA	NA	NA	NA
WP_011941408.1\|351191_351524_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013639293.1\|351520_353578_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013639294.1\|353582_354665_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_148360949.1\|354746_355040_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_013639296.1\|355041_355533_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011941414.1\|356228_356771_+\|transposase	transposase	NA	NA	NA	NA
WP_081479217.1\|356826_358557_-	hypothetical protein	NA	NA	NA	NA
WP_013639301.1\|359109_360333_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.6e-42	46.3
368497:368515	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1064404 : 1137148

Moraxella_phage(18.18%)

integrase,protease,tRNA,transposase

attL 1062846:1062862|attR 1144086:1144102

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1062846:1062862	attL	NA	NA	NA	NA
WP_007421380.1\|1064404_1065100_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_013639694.1\|1065096_1066023_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_148360933.1\|1066033_1066900_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_013639696.1\|1066925_1068716_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_007422648.1\|1068725_1069868_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_013639697.1\|1069947_1070289_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_007422650.1\|1070296_1071067_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_013639698.1\|1071167_1072772_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041665238.1\|1072839_1074645_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.8e-32	25.1
WP_007422393.1\|1074604_1075075_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_013639700.1\|1075064_1076003_-	alpha/beta hydrolase	M1PGN2	Moumouvirus	1.7e-36	31.9
WP_013639701.1\|1076025_1076703_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-26	36.1
WP_007422396.1\|1076695_1077943_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_007422397.1\|1077942_1079256_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_013639702.1\|1079289_1080384_-	acyltransferase	NA	NA	NA	NA
WP_013639703.1\|1080635_1082282_-	ribonuclease J	NA	NA	NA	NA
WP_007422400.1\|1082316_1083117_-	type III pantothenate kinase	NA	NA	NA	NA
WP_007422401.1\|1083138_1083867_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_011941877.1\|1083863_1085300_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_013639704.1\|1085308_1086826_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_013639705.1\|1086839_1088768_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_011941875.1\|1088774_1089086_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_013639706.1\|1089082_1089733_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_035186180.1\|1089739_1090228_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_013639707.1\|1090243_1091260_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_013639708.1\|1091265_1093326_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_007422410.1\|1093393_1094689_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_007422411.1\|1094690_1095302_-	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_011941872.1\|1095305_1096526_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_007422413.1\|1096522_1097164_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_007422414.1\|1097156_1097717_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_007422415.1\|1097792_1098158_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_172637322.1\|1098894_1099167_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	4.7e-19	58.9
WP_007422417.1\|1099351_1101793_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.6e-204	49.0
WP_011941871.1\|1101928_1103185_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-131	58.0
WP_007422419.1\|1103329_1103959_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.8e-59	58.5
WP_013639709.1\|1104116_1105439_-	trigger factor	NA	NA	NA	NA
WP_013639710.1\|1105705_1107682_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_013639711.1\|1107846_1110663_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_013639712.1\|1110664_1113313_-	DNA mismatch repair protein MutS	F2QAG1	Chrysochromulina_ericina_virus	1.3e-20	32.5
WP_013639713.1\|1113447_1114791_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA
WP_011941866.1\|1114793_1118039_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_007422523.1\|1118120_1118594_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_007422524.1\|1118598_1119795_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_013639714.1\|1119811_1121017_-	aminopeptidase	NA	NA	NA	NA
WP_007422526.1\|1121013_1121817_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013639715.1\|1121813_1122587_-	TatD family hydrolase	NA	NA	NA	NA
WP_007422527.1\|1122683_1124201_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_013639716.1\|1124200_1125379_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_007424440.1\|1125451_1126825_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	6.5e-24	30.6
WP_013639718.1\|1126829_1127795_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_007424438.1\|1127791_1128286_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_011941859.1\|1128288_1128954_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_007424436.1\|1129026_1130589_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_013639720.1\|1130896_1132111_+\|integrase	site-specific integrase	G9L697	Escherichia_phage	6.6e-121	54.2
WP_148360952.1\|1132107_1132635_-	hypothetical protein	NA	NA	NA	NA
WP_085947335.1\|1132727_1133674_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.1e-09	23.9
WP_011930570.1\|1134100_1135141_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013639724.1\|1135414_1137148_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
1144086:1144102	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1460447 : 1507322

Catovirus(22.22%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013639901.1\|1460447_1462073_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.5e-59	33.0
WP_007424736.1\|1462098_1463514_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_007424737.1\|1463529_1464069_-	DUF4442 domain-containing protein	NA	NA	NA	NA
WP_013639902.1\|1464061_1465780_-	AMP-binding protein	A0A1V0SBX8	Catovirus	6.0e-19	23.5
WP_013639903.1\|1465791_1467078_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_041665253.1\|1467089_1467932_-	dehydratase	NA	NA	NA	NA
WP_041664651.1\|1468023_1469424_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
WP_013639906.1\|1469423_1472000_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_013639907.1\|1472032_1473103_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	3.0e-08	33.3
WP_013639908.1\|1473106_1474309_-	alkane 1-monooxygenase	A0A1V0SBK9	Catovirus	1.8e-25	31.8
WP_172637325.1\|1474661_1475975_-	hypothetical protein	NA	NA	NA	NA
WP_007421748.1\|1476324_1477011_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_013639911.1\|1477003_1477651_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_013639912.1\|1477654_1478809_-	PrpF family protein	NA	NA	NA	NA
WP_007421744.1\|1478813_1479521_-	FCD domain-containing protein	NA	NA	NA	NA
WP_013639913.1\|1479617_1480985_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_007421743.1\|1481045_1482446_+	MFS transporter	NA	NA	NA	NA
WP_013639914.1\|1482477_1483539_+	isocitrate/isopropylmalate dehydrogenase family protein	NA	NA	NA	NA
WP_013639915.1\|1483563_1485348_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_013639916.1\|1485363_1486638_-	ribose 5-phosphate isomerase A	NA	NA	NA	NA
WP_013639917.1\|1486652_1487390_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_013639918.1\|1487389_1488208_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013639919.1\|1488204_1489809_-	glucose-6-phosphate dehydrogenase	C7BV85	Synechococcus_phage	1.3e-79	35.2
WP_011942122.1\|1489805_1490810_-	decarboxylating 6-phosphogluconate dehydrogenase	H6WFR9	Cyanophage	2.5e-78	46.4
WP_013639920.1\|1490929_1493761_-	bifunctional transaldolase/phosoglucose isomerase	NA	NA	NA	NA
WP_011942124.1\|1494026_1495832_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.0e-21	25.8
WP_013639921.1\|1495837_1497193_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_013639922.1\|1497487_1497832_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.6e-18	49.0
WP_041664652.1\|1497833_1498475_-	hypothetical protein	NA	NA	NA	NA
WP_172637313.1\|1498627_1498903_-\|transposase	transposase	NA	NA	NA	NA
WP_013639925.1\|1498980_1499409_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	1.7e-07	29.2
WP_011930570.1\|1499677_1500718_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011942129.1\|1501059_1501491_-	DoxX family protein	NA	NA	NA	NA
WP_013639927.1\|1501619_1502567_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011930570.1\|1504274_1505315_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013634984.1\|1505588_1507322_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2136787 : 2155623

Saccharomonospora_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013640286.1\|2136787_2137366_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013640289.1\|2138359_2139403_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013639729.1\|2139727_2140555_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007424944.1\|2140729_2141491_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_013640290.1\|2141501_2142500_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_007424946.1\|2142510_2143293_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_013640291.1\|2143321_2144065_-	flagellar basal-body rod protein FlgF	NA	NA	NA	NA
WP_013640292.1\|2144290_2144830_+	hypothetical protein	NA	NA	NA	NA
WP_172637326.1\|2144753_2146055_+	DNA polymerase Y family protein	NA	NA	NA	NA
WP_013640294.1\|2146054_2149168_+	error-prone DNA polymerase	Q8W6C3	Saccharomonospora_phage	1.9e-76	27.3
WP_013640295.1\|2149240_2149753_+	flagellar basal body-associated FliL family protein	NA	NA	NA	NA
WP_172637327.1\|2149803_2150328_+	hypothetical protein	NA	NA	NA	NA
WP_138919228.1\|2150317_2151052_+	hypothetical protein	NA	NA	NA	NA
WP_148360983.1\|2151048_2151438_+	hypothetical protein	NA	NA	NA	NA
WP_007421341.1\|2151421_2152438_-\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_148361028.1\|2153072_2154485_+	hypothetical protein	NA	NA	NA	NA
WP_013640300.1\|2155166_2155352_+\|transposase	transposase	NA	NA	NA	NA
WP_013640301.1\|2155416_2155623_+\|transposase	transposase	S5WIU1	Leptospira_phage	1.5e-09	48.2

DBSCAN-SWA_6

2163616 : 2230209

Klosneuvirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013640308.1\|2163616_2164564_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_007424761.1\|2165627_2166074_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_007424760.1\|2166188_2167148_+	arginase	A0A1V0SJM8	Klosneuvirus	2.0e-19	31.2
WP_007424759.1\|2167150_2168221_+	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	1.5e-92	50.3
WP_048858054.1\|2168317_2169286_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_007424757.1\|2169303_2169753_+	DUF962 domain-containing protein	NA	NA	NA	NA
WP_041664858.1\|2169883_2171728_+	polyhydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_013640313.1\|2172494_2173703_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.4e-94	46.8
WP_013635006.1\|2175578_2176946_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	5.8e-41	42.4
WP_041664860.1\|2177393_2178305_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013640318.1\|2178408_2179161_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013640319.1\|2179362_2180310_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_013640320.1\|2180344_2181223_-	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_007424997.1\|2181342_2182242_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_085947346.1\|2182310_2182775_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_148360979.1\|2182905_2183151_-	hypothetical protein	NA	NA	NA	NA
WP_013640323.1\|2183348_2183876_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007421404.1\|2183880_2184105_+\|transposase	transposase	NA	NA	NA	NA
WP_083818639.1\|2184113_2184296_+\|transposase	transposase	NA	NA	NA	NA
WP_013640324.1\|2184647_2185436_-	hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	5.9e-14	33.7
WP_007421407.1\|2185474_2186497_-	amidohydrolase	NA	NA	NA	NA
WP_007421408.1\|2186523_2187828_-	MFS transporter	NA	NA	NA	NA
WP_007421409.1\|2187854_2188535_-	RraA family protein	NA	NA	NA	NA
WP_007421410.1\|2188631_2189540_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013640326.1\|2190568_2191435_+	amidohydrolase family protein	NA	NA	NA	NA
WP_013640327.1\|2191419_2195064_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_148360931.1\|2195294_2195735_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_013640329.1\|2195770_2197036_+	MFS transporter	NA	NA	NA	NA
WP_013640088.1\|2197930_2198806_-	ATP-binding protein	NA	NA	NA	NA
WP_081432838.1\|2198802_2200332_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_152982804.1\|2201230_2201644_+	hypothetical protein	NA	NA	NA	NA
WP_013640333.1\|2201667_2202498_-	hypothetical protein	NA	NA	NA	NA
WP_013640335.1\|2203743_2204640_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_013640336.1\|2204829_2206395_+	amino acid permease	NA	NA	NA	NA
WP_013640337.1\|2206426_2207194_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.0e-10	30.4
WP_007421341.1\|2207875_2208892_+\|transposase	IS1595-like element ISAcr1 family transposase	NA	NA	NA	NA
WP_013640340.1\|2209641_2210100_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_013640341.1\|2210194_2210506_+	cupin domain-containing protein	NA	NA	NA	NA
WP_013640342.1\|2210697_2211576_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013640343.1\|2211753_2212677_+	EamA family transporter	NA	NA	NA	NA
WP_013640344.1\|2213267_2214635_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_013640345.1\|2214606_2215848_+	methylitaconate delta2-delta3-isomerase	NA	NA	NA	NA
WP_007421431.1\|2215851_2216610_+	phosphosulfolactate synthase	NA	NA	NA	NA
WP_007421432.1\|2216620_2217559_+	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_013640346.1\|2217536_2219210_+	FAD-dependent tricarballylate dehydrogenase TcuA	A0A2P0ZL82	Lactobacillus_phage	1.5e-19	25.9
WP_013634879.1\|2219142_2220276_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_041664916.1\|2220359_2221358_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041664922.1\|2221361_2222198_+	ABC transporter permease	NA	NA	NA	NA
WP_007421436.1\|2222197_2223025_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_041664929.1\|2223063_2223888_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-32	37.3
WP_013640353.1\|2226210_2226942_-	hypothetical protein	NA	NA	NA	NA
WP_013640354.1\|2226954_2228487_-	hypothetical protein	NA	NA	NA	NA
WP_013634879.1\|2229075_2230209_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2239253 : 2283132

Leptospira_phage(16.67%)

integrase,transposase

attL 2229069:2229128|attR 2269810:2271038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2229069:2229128	attL	NA	NA	NA	NA
WP_013640363.1\|2239253_2240333_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_013640365.1\|2242429_2242651_+	hypothetical protein	NA	NA	NA	NA
WP_013640366.1\|2242643_2242898_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041665314.1\|2243324_2244926_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013640368.1\|2244925_2246050_+\|integrase	integrase	NA	NA	NA	NA
WP_013640369.1\|2246250_2246574_+	hypothetical protein	NA	NA	NA	NA
WP_013640371.1\|2247114_2248131_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011930570.1\|2248984_2250025_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013634984.1\|2250298_2252032_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_154653540.1\|2252638_2253343_-	hypothetical protein	NA	NA	NA	NA
WP_154653541.1\|2253348_2254329_-	hypothetical protein	NA	NA	NA	NA
WP_012039989.1\|2254687_2255593_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	5.2e-30	32.6
WP_013639834.1\|2255597_2256791_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_013640374.1\|2257415_2259320_+	AAA family ATPase	NA	NA	NA	NA
WP_172637328.1\|2259762_2260230_+\|transposase	transposase	NA	NA	NA	NA
WP_013640376.1\|2260226_2260574_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-25	52.3
WP_013640379.1\|2262288_2263143_+	hypothetical protein	NA	NA	NA	NA
WP_013640380.1\|2263410_2263662_+	hypothetical protein	NA	NA	NA	NA
WP_013640381.1\|2264160_2264478_-	hypothetical protein	NA	NA	NA	NA
WP_041664952.1\|2264508_2264748_-	hypothetical protein	NA	NA	NA	NA
WP_041664953.1\|2265095_2266796_+	recombinase family protein	R9TP69	Rhizobium_phage	8.7e-79	36.8
WP_013640384.1\|2267356_2268130_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_013640385.1\|2268195_2269035_+	sterol desaturase family protein	A0A1V0CNR7	Kaumoebavirus	7.5e-07	29.5
WP_013640386.1\|2269334_2269826_+	hypothetical protein	NA	NA	NA	NA
WP_013634879.1\|2269816_2270950_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_081479241.1\|2270878_2271136_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
2269810:2271038	attR	NA	NA	NA	NA
WP_013640387.1\|2271443_2272121_-	hypothetical protein	NA	NA	NA	NA
WP_013640392.1\|2274915_2275239_+	hypothetical protein	NA	NA	NA	NA
WP_154653542.1\|2275642_2277115_+	hypothetical protein	NA	NA	NA	NA
WP_013640394.1\|2277116_2277827_+	hypothetical protein	NA	NA	NA	NA
WP_013640395.1\|2277956_2279156_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.2e-93	46.8
WP_085947338.1\|2279273_2280040_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.3e-25	44.7
WP_011930570.1\|2280313_2281354_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013634994.1\|2282082_2283132_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2790834 : 2844666

Staphylococcus_phage(25.0%)

integrase,transposase

attL 2837426:2837443|attR 2854542:2854559

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148360995.1\|2790834_2791389_-\|transposase	transposase	NA	NA	NA	NA
WP_081479250.1\|2792199_2792769_-	bacteriochlorophyll 4-vinyl reductase	NA	NA	NA	NA
WP_013640649.1\|2792798_2794361_-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	NA	NA	NA	NA
WP_081479251.1\|2794623_2794920_-\|transposase	transposase	NA	NA	NA	NA
WP_013640651.1\|2795135_2795297_-	hypothetical protein	NA	NA	NA	NA
WP_041665081.1\|2795914_2796127_+	hypothetical protein	NA	NA	NA	NA
WP_013640652.1\|2796185_2796941_-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA	NA	NA	NA
WP_013640653.1\|2797017_2797698_+	pyroglutamyl-peptidase I	NA	NA	NA	NA
WP_041665360.1\|2797994_2798831_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_013640655.1\|2798855_2800790_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.2e-87	40.0
WP_012039939.1\|2800874_2803148_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_013640656.1\|2803405_2804092_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_012039941.1\|2804096_2805563_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_013640657.1\|2806005_2806812_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	2.7e-62	48.5
WP_007421521.1\|2808087_2808882_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_013634948.1\|2808913_2810752_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_013634947.1\|2810748_2812659_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_007421524.1\|2812727_2813531_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-11	27.9
WP_013634946.1\|2813532_2814600_-	ABC transporter permease	NA	NA	NA	NA
WP_013640659.1\|2814680_2815643_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013634944.1\|2815806_2816595_-	TIM barrel protein	NA	NA	NA	NA
WP_013634943.1\|2816603_2817614_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013634942.1\|2817615_2818524_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013634941.1\|2818653_2819727_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_160321861.1\|2820048_2820192_+	hypothetical protein	NA	NA	NA	NA
WP_013634939.1\|2820254_2821067_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_007421628.1\|2821063_2821975_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_007421627.1\|2822088_2823033_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013640660.1\|2823356_2824148_+	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA	NA	NA	NA
WP_007421625.1\|2824149_2825136_+	hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	7.9e-16	28.7
WP_013640661.1\|2825206_2826199_+	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_007421623.1\|2826203_2827325_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013640662.1\|2827669_2830096_-	DUF2309 domain-containing protein	NA	NA	NA	NA
WP_013640663.1\|2830115_2831675_-	oxidoreductase	NA	NA	NA	NA
WP_035188059.1\|2831782_2832658_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013640665.1\|2832830_2833847_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012039978.1\|2834844_2835465_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_013640667.1\|2835461_2835890_+	hypothetical protein	NA	NA	NA	NA
WP_013640668.1\|2835886_2836423_+	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_013640669.1\|2836512_2836701_+	hypothetical protein	NA	NA	NA	NA
WP_148361044.1\|2836840_2838385_+	DUF1800 family protein	NA	NA	NA	NA
2837426:2837443	attL	NA	NA	NA	NA
WP_041665363.1\|2838390_2839608_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_013640673.1\|2839667_2841287_+	deoxyribodipyrimidine photo-lyase/cryptochrome family protein	NA	NA	NA	NA
WP_049796633.1\|2841414_2841741_+	hypothetical protein	NA	NA	NA	NA
WP_013640675.1\|2841940_2843542_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013640676.1\|2843541_2844666_+\|integrase	integrase	NA	NA	NA	NA
2854542:2854559	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3090254 : 3125376

uncultured_virus(62.5%)

tail,tRNA,portal,transposase,plate,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013640853.1\|3090254_3091490_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_013640854.1\|3091486_3092320_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_007423315.1\|3092362_3093832_-	APC family permease	NA	NA	NA	NA
WP_012040101.1\|3093828_3094551_-	endonuclease III	NA	NA	NA	NA
WP_012040102.1\|3094603_3095149_+	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_013640855.1\|3095221_3096370_+	MFS transporter	NA	NA	NA	NA
WP_007423234.1\|3096466_3098116_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.6e-173	61.2
WP_007423235.1\|3098160_3098475_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.8e-22	58.5
WP_172637333.1\|3098737_3099019_+	Usg family protein	NA	NA	NA	NA
WP_007423237.1\|3099138_3099969_+	hypothetical protein	NA	NA	NA	NA
WP_012040106.1\|3100093_3101479_+\|terminase	phage terminase large subunit	A0A1X9SGU8	Bradyrhizobium_phage	2.7e-70	39.3
WP_013640857.1\|3101483_3102896_+\|portal	phage portal protein	NA	NA	NA	NA
WP_007423132.1\|3102892_3103318_+	hypothetical protein	NA	NA	NA	NA
WP_007423131.1\|3103417_3104740_+	DUF4043 family protein	NA	NA	NA	NA
WP_007423130.1\|3104753_3105062_+	hypothetical protein	NA	NA	NA	NA
WP_012040108.1\|3105063_3105471_+	hypothetical protein	NA	NA	NA	NA
WP_013640858.1\|3105478_3106123_+	hypothetical protein	NA	NA	NA	NA
WP_013640859.1\|3106122_3106968_+	hypothetical protein	NA	NA	NA	NA
WP_013640860.1\|3106978_3107116_+	hypothetical protein	NA	NA	NA	NA
WP_007421564.1\|3107119_3108676_+\|tail	tail protein	B3GAJ6	uncultured_virus	3.7e-100	46.4
WP_007421565.1\|3108684_3109113_+	hypothetical protein	NA	NA	NA	NA
WP_007421566.1\|3109109_3109415_+	hypothetical protein	NA	NA	NA	NA
WP_148360941.1\|3109701_3110352_+	hypothetical protein	NA	NA	NA	NA
WP_013640862.1\|3110368_3111055_+	hypothetical protein	NA	NA	NA	NA
WP_007422926.1\|3111051_3111246_+	hypothetical protein	NA	NA	NA	NA
WP_013640863.1\|3111217_3112219_+	hypothetical protein	NA	NA	NA	NA
WP_007422924.1\|3112215_3112764_+\|plate	phage baseplate assembly protein V	B3GAJ7	uncultured_virus	3.1e-14	38.7
WP_012040115.1\|3112763_3113132_+	hypothetical protein	NA	NA	NA	NA
WP_013640864.1\|3113150_3114275_+\|plate	baseplate J/gp47 family protein	B3GAJ9	uncultured_virus	1.7e-51	43.6
WP_007422920.1\|3114278_3114953_+	hypothetical protein	NA	NA	NA	NA
WP_013640865.1\|3115045_3116299_+	hypothetical protein	NA	NA	NA	NA
WP_013640866.1\|3116313_3116805_+	hypothetical protein	NA	NA	NA	NA
WP_013640867.1\|3116814_3119358_+	right-handed parallel beta-helix repeat-containing protein	A0A2I7S0A8	Vibrio_phage	2.7e-07	28.8
WP_013640868.1\|3119385_3121278_+	hypothetical protein	NA	NA	NA	NA
WP_013640869.1\|3121280_3123419_+	hypothetical protein	NA	NA	NA	NA
WP_007422432.1\|3123424_3123778_+	hypothetical protein	NA	NA	NA	NA
WP_085947342.1\|3123794_3123974_+	hypothetical protein	NA	NA	NA	NA
WP_013635006.1\|3124008_3125376_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	5.8e-41	42.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015178

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_015186

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection